Parcourir par Auteur Cirad

Genomic evidence of genuine wild versus admixed olive populations evolving in the same natural environments in western Mediterranean Basin. Zunino Lison, Cubry Philippe, Sarah Gautier, Mournet Pierre, El Bakkali Ahmed, Aqbouch Laila, Sidibé-Bocs Stéphanie, Costes Evelyne, Khadari Bouchaib. 2024. PloS One, 19 (1):e0295043, 18 p.

Genome-wide admixture mapping identifies wild ancestry-of-origin segments in cultivated Robusta coffee. Vi Tram, Vigouroux Yves, Cubry Philippe, Marraccini Pierre, Phan Viet Ha, Khong Ngan Giang, Poncet Valérie. 2023. Genome Biology and Evolution, 15 (5):evad065, 12 p.

A quantitative theory for genomic offset statistics. Gain Clément, Rhone Bénédicte, Cubry Philippe, Salazar Israfel, Forbes Florence, Vigouroux Yves, Jay Flora, François Olivier. 2023. Molecular Biology and Evolution, 40 (6):msad140, 10 p.

Adaptive potential of Coffea canephora from Uganda in response to climate change. Oliveira de Aquino Sinara, Kiwuka Catherine, Tournebize Rémi, Gain Clément, Marraccini Pierre, Mariac Cédric, Bethume Kévin, Couderc Marie, Cubry Philippe, Andrade Alan Carvalho, Lepelley Maud, Darracq Olivier, Crouzillat Dominique, Anten Niels P.R., Musoli Pascal, Vigouroux Yves, De Kochko Alexandre, Manel Stéphanie, François Olivier, Poncet Valérie. 2022. Molecular Ecology, 31 (6) : 1800-1819.

Genomic footprints of selection in early-and late-flowering pearl millet landraces. Faye Adana, Barnaud Adeline, Kane Ndjido Ardo, Cubry Philippe, Mariac Cédric, Burgarella Concetta, Rhone Bénédicte, Faye Aliou, Olodo Katina Floride, Cisse Aby, Couderc Marie, Dequincey Anaïs, Zekraoui Leïla, Moussa Djibo, Tidjani Moussa, Vigouroux Yves, Berthouly-Salazar Cécile. 2022. Frontiers in Plant Science, 13:880631, 13 p.

Fonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate. Abrouk Michael, Ibrahim Ahmed Hanin, Cubry Philippe, Simoníková Denisa, Cauet Stéphane, Pailles Yveline, Bettgenhaeuser Jan, Gapa Liubov, Scarcelli Nora, Couderc Marie, Zekraoui Leïla, Kathiresan Nagarajan, Cizkova Jana, Hribova Eva, Dolozel Jaroslav, Arribat Sandrine, Berges Hélène, Wieringa Jan J., Gueye Mathieu, Kane Ndjido Ardo, Leclerc Christian, Causse Sandrine, Vancoppenolle Sylvie, Billot Claire, Wicker Thomas, Vigouroux Yves, Barnaud Adeline, Krattinger Simon G.. 2020. Nature Communications, 11:4488, 13 p.

New insights on spatial genetic structure and diversity of Coffea canephora (Rubiaceae) in Upper Guinea based on old herbaria. Labouisse Jean-Pierre, Cubry Philippe, Austerlitz Frédéric, Rivallan Ronan, Nguyen Hong Anh. 2020. Plant Ecology and Evolution, 153 (1) : 82-100.

Pearl millet genomic vulnerability to climate change in West Africa highlights the need for regional collaboration. Rhone Bénédicte, Defrance Dimitri, Berthouly-Salazar Cécile, Mariac Cédric, Cubry Philippe, Couderc Marie, Dequincey Anaïs, Assoumane Aichatou, Kane Ndjido Ardo, Sultan Benjamin, Barnaud Adeline, Vigouroux Yves. 2020. Nature Communications, 11:5274, 9 p.

Yam genomics supports West Africa as a major cradle of crop domestication. Scarcelli Nora, Cubry Philippe, Akakpo Roland, Thuillet Anne-Céline, Obidiegwu Jude, Baco Mohamed N., Otoo Emmanuel, Sonké Bonaventure, Dansi Alexandre, Djedatin Gustave, Mariac Cédric, Couderc Marie, Causse Sandrine, Alix Karine, Chaïr Hâna, François Olivier, Vigouroux Yves. 2019. Science Advances, 5 (5):eaaw1947, 7 p.

QTL detection for growth and latex production in a full-sib rubber tree population cultivated under suboptimal climate conditions. Rosa João Ricardo Bachega Feijó, Mantello Camilia Campos, Garcia Dominique, de Souza Lívia Moura, Da Silva Carla Cristina, Gazaffi Rodrigo, da Silva Cícero Casimiro, Toledo-Silva Guilherme, Cubry Philippe, Garcia Antonio Augusto Franco, de Souza Anete Pereira, Le Guen Vincent. 2018. BMC Plant Biology, 18:223, 16 p.

A western Sahara centre of domestication inferred from pearl millet genomes. Burgarella Concetta, Cubry Philippe, Kane Ndjido Ardo, Varshney Rajeev K., Mariac Cédric, Liu Xin, Shi Chengcheng, Thudi Mahendar, Couderc Marie, Xu Xun, Chitikineni Annapurna, Scarcelli Nora, Barnaud Adeline, Rhoné Bénédicte, Dupuy Christian, François Olivier, Berthouly-Salazar Cécile, Vigouroux Yves. 2018. Nature Ecology and Evolution, 2 (9) : 1377-1380.

Developing core collections to optimize the management and the exploitation of diversity of the coffee Coffea canephora. Leroy Thierry, De Bellis Fabien, Legnaté Hyacinthe, Musoli Pascal, Kalongji Adrien, Loor Solorzano Rey Gaston, Cubry Philippe. 2014. Genetica, 142 (3) : 185-199.

Development and characterization of a new set of 164 polymorphic EST-SSR markers for diversity and breeding studies in rubber tree (Hevea brasiliensis Müll. Arg.). Cubry Philippe, Pujade-Renaud Valérie, Garcia Dominique, Espeout Sandra, Le Guen Vincent, Granet Françoise, Seguin Marc. 2014. Plant Breeding, 133 (3) : 419-426.

Global analysis of Coffea canephora Pierre ex Froehner (Rubiaceae) from the Guineo-Congolese region reveals impacts from climatic refuges and migration effects. Cubry Philippe, De Bellis Fabien, Pot David, Musoli Pascal, Leroy Thierry. 2013. Genetic Resources and Crop Evolution, 60 (2) : 483-501.

An initial assessment of linkage disequilibrium (LD) in coffee trees: LD patterns in groups of Coffea canephora Pierre using microsatellite analysis. Cubry Philippe, De Bellis Fabien, Avia Komlan, Bouchet Sophie, Pot David, Dufour Magali, Legnaté Hyacinthe, Leroy Thierry. 2013. BMC Genomics, 14 (10), 15 p.

Amélioration génétique du caféier Coffea canephora Pierre : connaissances acquises, stratégies et perspectives. Montagnon Christophe, Cubry Philippe, Leroy Thierry. 2012. Cahiers Agricultures, 21 (2-3) : 143-153.

Foundation characteristics of edible Musa triploids revealed from allelic distribution of SSR markers. Hippolyte Isabelle, Jenny Christophe, Gardes Laëtitia, Bakry Frédéric, Rivallan Ronan, Pomies Virginie, Cubry Philippe, Tomekpé Kodjo, Risterucci Ange-Marie, Roux Nicolas, Rouard Mathieu, Arnaud Elizabeth, Kolesnikova-Allen Maria, Perrier Xavier. 2012. Annals of Botany, 109 (5) : 937-951.

Impact of past climatic and recent anthropogenic factors on wild yam genetic diversity. Chaïr Hâna, Duroy Pierre-Olivier, Cubry Philippe, Sinsin Brice Augustin, Pham Jean Louis. 2011. Molecular Ecology, 20 (8) : 1612-1623.

Improving the quality of African robustas: QTLs for yield- and quality-related traits in Coffea canephora. Leroy Thierry, De Bellis Fabien, Legnaté Hyacinthe, Kananura Edmund, Gonzales Gustavo, Pereira Luiz Filipe P., Andrade Alan Carvalho, Charmetant Pierre, Montagnon Christophe, Cubry Philippe, Marraccini Pierre, Pot David, De Kochko Alexandre. 2011. Tree Genetics and Genomes, 7 (4) : 781-798.

Genetic differentiation of wild and cultivated populations : Diversity of Coffea canephora Pierre in Uganda. Musoli Chungason Pascal, Cubry Philippe, Aluka P., Billot Claire, Dufour Magali, De Bellis Fabien, Pot David, Bieysse Daniel, Charrier André, Leroy Thierry. 2009. Genome (Ottawa), 52 : 634-646.

Diversity in coffee assessed with SSR markers: Structure of the genus Coffea and perspectives for breeding. Cubry Philippe, Musoli Chungason Pascal, Legnaté Hyacinthe, Pot David, De Bellis Fabien, Poncet Valérie, Anthony François, Dufour Magali, Leroy Thierry. 2008. Genome (Ottawa), 51 (1) : 50-63.

Sequencing-based molecular markers for wild and cultivated coffee diversity exploration and crop improvement. Vi Tram, Marraccini Pierre, De Kochko Alexandre, Cubry Philippe, Khong Ngan Giang, Poncet Valérie. 2022. In : Coffee science: biotechnological advances, economics, and health benefits. Ramakrishna Akula (ed.), Giridhar Parvatam (ed.), Jeszka-Skowron Magdalena (ed.) (eds.). Boca Raton : CRC Press, 213-220. ISBN 978-0-367-48843-7

Genomic characterization of 10 Vietnamese elite clones of Robusta (Coffea canephora). Vi Bao Tram, Cubry Philippe, Marraccini Pierre, Dinh Thi Tieu Oanh, Phan Viet Ha, Khong Ngan Giang, Poncet Valérie. 2021. In : 28th Conference of Association for the Science and Information on Coffee - Books of abstracts. ASIC. Montpellier : ASIC, Résumé, p. 163. Conference of Association for the Science and Information on Coffee (ASIC 2021). 28, Montpellier, France, 28 Juin 2021/1 Juillet 2021.

African yam domestication in light of the NGS revolution. Scarcelli Nora, Cubry Philippe, Akakpo Roland, Thuillet Anne-Céline, Obidiegwu Jude, Baco Mohamed N., Otoo Emmanuel, Sonké Bonaventure, Dansi Alexandre, Djedatin Gustave, Mariac Cédric, Couderc Marie, Causse Sandrine, Alix Karine, Chaïr Hâna, François Olivier, Vigouroux Yves. 2019. In : Dedicated to the origins of agriculture and the domestication, evolution and utilization of genetic resources. Abstracts book. IRD, Bioversity International, Agropolis International, CIRAD, Montpellier SupAgro, Université de Montpellier, INRA. Montpellier : IRD, Résumé, p. 42. Jack R. Harlan International Symposium. 3, Montpellier, France, 3 Juin 2019/7 Juin 2019.

Genotipagem por enriquecimento e captura direcionada de genes candidatos em Coffea canephora. De Aquino Sinara Oliveira, Tournebize Rémi, Marraccini Pierre, Mariac Cédric, Couderc Marie, Bethune Kevin, Cubry Philippe, Andrade Alan Carvalho, Darracq Olivier, Lepelley Maud, Crouzillat Dominique, Kiwuka Catherine, Anten Niels P.R., Manel Stéphanie, François Olivier, Vigouroux Yves, De Kochko Alexandre, Poncet Valérie. 2019. In : X Simpósio de Pesquisa dos Cafés do Brasil. Consórcio Pesquisa Café. Vitória : EMBRAPA, 6 p. (Anais do Simpósio de Pesquisa dos Cafés do Brasil, 10) Simpósio de Pesquisa dos Cafés do Brasil. 10, Vitória, Brésil, 8 Octobre 2019/11 Octobre 2019.

Potencial adaptativo de Coffea canephora para projeções das alterações climáticas. De Aquino Sinara Oliveira, Tournebize Rémi, Marraccini Pierre, Mariac Cédric, Couderc Florence, Bethune Kevin, Cubry Philippe, Andrade Alan Carvalho, Darracq Olivier, Lepelley Maud, Crouzillat Dominique, Kiwuka Catherine, Anten Niels P.R., Manel Stéphanie, François Olivier, Vigouroux Yves, De Kochko Alexandre, Poncet Valérie. 2019. In : X Simpósio de Pesquisa dos Cafés do Brasil. Consórcio Pesquisa Café. Vitória : EMBRAPA, 6 p. (Anais do Simpósio de Pesquisa dos Cafés do Brasil, 10) Simpósio de Pesquisa dos Cafés do Brasil. 10, Vitória, Brésil, 8 Octobre 2019/11 Octobre 2019.

Coffea spp. and Coffea canephora diversity evaluated with microsatellites and SNPs. Lessons from comparative analysis. Leroy Thierry, Cubry Philippe, Durand Noël, Dufour Magali, De Bellis Fabien, Jourdan Isabelle, Vieira Luiz Gonzaga Esteves, Musoli Chungason Pascal, Aluka P., Legnaté Hyacinthe, Marraccini Pierre, Pot David. 2007. In : 21st International Conference on Coffee Science, Montpellier (France), 11th - 15th September 2006 = 21ème Colloque scientifique international sur le café ; 21. Internationales Wissenshaftliches Kolloquium über Kaffee ; 21e Coloquio Cientifico Internacional sobre el Café. ASIC. Montpellier : ASIC, 827-834. ISBN 2-900212-20-0 Colloque Scientifique International sur le Café. 21, Montpellier, France, 11 Septembre 2006/15 Septembre 2006.

Fighting against coffee wilt disease : Uganda wild C. canephora genetic diversity and its usefulness. Musoli Chungason Pascal, Aluka P., Cubry Philippe, Dufour Magali, De Bellis Fabien, Nakendo Saleh, Nabaggala Agnès, Ogwang J., Kyetere Denis T., Leroy Thierry, Bieysse Daniel, Charrier André. 2007. In : 21st International Conference on Coffee Science, Montpellier (France), 11th - 15th September 2006 = 21ème Colloque scientifique international sur le café ; 21. Internationales Wissenshaftliches Kolloquium über Kaffee ; 21e Coloquio Cientifico Internacional sobre el Café. ASIC. Montpellier : ASIC, 835-843. ISBN 2-900212-20-0 Colloque Scientifique International sur le Café. 21, Montpellier, France, 11 Septembre 2006/15 Septembre 2006.

Genetic diversity in Coffea genus using microsatellites Loci. Cubry Philippe, Pot David, De Bellis Fabien, Musoli Chungason Pascal, Aluka P., Legnaté Hyacinthe, Dufour Magali, Leroy Thierry. 2007. In : 21st International Conference on Coffee Science, Montpellier (France), 11th - 15th September 2006 = 21ème Colloque scientifique international sur le café ; 21. Internationales Wissenshaftliches Kolloquium über Kaffee ; 21e Coloquio Cientifico Internacional sobre el Café. ASIC. Montpellier : ASIC, 916-921. ISBN 2-900212-20-0 Colloque Scientifique International sur le Café. 21, Montpellier, France, 11 Septembre 2006/15 Septembre 2006.

Genetic diversity within Coffea canephora germplasm maintained in RCI using SSR markers, results and future prospects. Cubry Philippe, Musoli Chungason Pascal, Legnaté Hyacinthe, Aluka P., Dufour Magali, Pot David, De Bellis Fabien, Leroy Thierry. 2007. In : 21st International Conference on Coffee Science, Montpellier (France), 11th - 15th September 2006 = 21ème Colloque scientifique international sur le café ; 21. Internationales Wissenshaftliches Kolloquium über Kaffee ; 21e Coloquio Cientifico Internacional sobre el Café. ASIC. Montpellier : ASIC, 912-915. ISBN 2-900212-20-0 Colloque Scientifique International sur le Café. 21, Montpellier, France, 11 Septembre 2006/15 Septembre 2006.

Genetic diversity, NIRS, fruit biochemical analyses and cup testing in cultivated Coffea canephora Pierre from different districts in Uganda. Aluka P., Musoli Chungason Pascal, Cubry Philippe, Davrieux Fabrice, Ribeyre Fabienne, Guyot Bernard, De Bellis Fabien, Pinard Fabrice, Kyetere Denis T., Ogwang J., Dufour Magali, Leroy Thierry. 2007. In : 21st International Conference on Coffee Science, Montpellier (France), 11th - 15th September 2006 = 21ème Colloque scientifique international sur le café ; 21. Internationales Wissenshaftliches Kolloquium über Kaffee ; 21e Coloquio Cientifico Internacional sobre el Café. ASIC. Montpellier : ASIC, 302-305. ISBN 2-900212-20-0 Colloque Scientifique International sur le Café. 21, Montpellier, France, 11 Septembre 2006/15 Septembre 2006.

Nucleotide diversity of genes involved in sucrose metabolism. Towards the identification of candidates genes controlling sucrose variability in Coffea sp. Pot David, Bouchet Sophie, Marraccini Pierre, De Bellis Fabien, Cubry Philippe, Jourdan Isabelle, Perreira Luiz Filipe Protasio, Vieira Luiz Gonzaga Esteves, Ferreira Lucia Pires, Musoli Chungason Pascal, Legnaté Hyacinthe, Leroy Thierry. 2007. In : 21st International Conference on Coffee Science, Montpellier (France), 11th - 15th September 2006 = 21ème Colloque scientifique international sur le café ; 21. Internationales Wissenshaftliches Kolloquium über Kaffee ; 21e Coloquio Cientifico Internacional sobre el Café. ASIC. Montpellier : ASIC, 679-686. ISBN 2-900212-20-0 Colloque Scientifique International sur le Café. 21, Montpellier, France, 11 Septembre 2006/15 Septembre 2006.

GENESALB (2008-2010): Genetic analysis of resistance to South American leaf blight (SALB, Microcyclus ulei) in rubber tree (Hevea spp.) : [P059]. Seguin Marc, Argout Xavier, Berger Angélique, Bouchata Karima, Déon Marine, Doare Fabien, Garcia Dominique, Goujon Eric, Le Guen Vincent, Pujade-Renaud Valérie, Weber Christelle, Granet Françoise, Cavaloc Eric, Cubry Philippe, Espeout Sandra, Fonseca Fernando, Mattos Carlos Raimunto Reis, Scomparin Cassio. 2010. In : Séminaire Génoplante, Pont-Royal en Provence, France, 29-31 mars 2010. s.l. : s.n., Résumé, 3 p. Séminaire Génoplante, Pont-Royal Provence, France, 29 Mars 2010/31 Mars 2010.

Which genetic diversity was brought to Vietnamese Robusta coffee (Coffea canephora)? Vi Tram, Cubry Philippe, Marraccini Pierre, Dinh Thi Tieu Oanh, Phan Viet Ha, Zhang Dapeng, Stoffelen Piet, Vigouroux Yves, Poncet Valérie, Khong Ngan Giang. 2023. In : Book of abstracts of the 29th conference ASIC 2023. ASIC, VAAS. Hanoï : ASIC, p. 159. ASIC Conference on Coffee Science. 29, Hanoï, Viet Nam, 11 Septembre 2023/14 Septembre 2023.

GENESALB (2007-2010): GENEtic analysis of resistance to South American Leaf Blight (SALB) in rubber tree (Hevea spp.). Seguin Marc, Granet Françoise, Cavaloc Eric, Scomparin Cassio, Mattos Carlos Raimunto Reis, Fonseca Fernando, Cubry Philippe, Espeout Sandra, Rivallan Ronan, Berger Angélique, Déon Marine, Argout Xavier, Le Guen Vincent, Goujon Eric, Pujade-Renaud Valérie, Doare Fabien, Garcia Dominique. 2012. In : Plant Genomics Seminar, Pont Royal en Provence, France, 3-5 April 2012. GISbV, ANR. s.l. : s.n., Résumé, 2 p. Plant Genomics Seminar, Pont Royal en Provence, France, 3 Avril 2012/5 Avril 2012.

Genetic structure of Coffea canephora Pierre species assessed by microsatellites markers. Cubry Philippe, Pot David, De Bellis Fabien, Legnaté Hyacinthe, Leroy Thierry. 2008. In : Abstracts of Plant and Animal Genomes XVIth Conference, San Diego, CA (USA), January 12-16, 2008. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 16, San Diego, États-Unis, 12 Janvier 2008/16 Janvier 2008.

Structuration de la diversité génétique et analyse des patrons de déséquilibre de liaison de l'espèce Coffea canephora Pierre ex. Froehner. Cubry Philippe. 2008. Montpellier : UM2, 242 p. Thèse d'université : Evolution, écologie, ressources génétiques, paléontologie : Université Montpellier 2

Analyse de la diversité et évaluation du déséquilibre de liaison chez quelques populations naturelles et cultivées de caféiers Coffea canephora. Cubry Philippe. 2005. Montpellier : ENSAM, 42 p. Mémoire DEA : Ressources génétiques et interactions biologiques : Ecole nationale supérieure agronomique de Montpellier