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Number of items: 31.

Journal article

Genome ancestry mosaics reveal multiple and cryptic contributors to cultivated banana. Martin Guillaume, Cardi Céline, Sarah Gautier, Ricci Sebastien, Jenny Christophe, Fondi Emmanuel, Perrier Xavier, Glaszmann Jean-Christophe, D'Hont Angélique, Yahiaoui Nabila. 2020. Plant Journal, 102 (5) : pp. 1008-1025.
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Evolutionary transcriptomics reveals the origins of olives and the genomic changes associated with their domestication. Gros-Balthazard Muriel, Besnard Guillaume, Sarah Gautier, Holtz Yan, Leclercq Julie, Santoni Sylvain, Wegmann Daniel, Glemin Sylvain, Khadari Bouchaib. 2019. Plant Journal, 100 (1) : pp. 143-157.
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Transcriptome data from three endemic Myrtaceae species from New Caledonia displaying contrasting responses to myrtle rust (Austropuccinia psidii). Soewarto Julia, Hamelin Chantal, Bocs Stéphanie, Mournet Pierre, Vignes Hélène, Berger Angélique, Armero Villanueva Alix Augusto, Martin Guillaume, Dereeper Alexis, Sarah Gautier, Carriconde Fabian, Maggia Laurent. 2019. Data in Brief, 22 : pp. 794-811.
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Domestication rewired gene expression and nucleotide diversity patterns in tomato. Sauvage Christopher, Rau Andrea, Aichholz Charlotte, Chadoeuf Joël, Sarah Gautier, Ruiz Manuel, Santoni Sylvain, Causse Mathilde, David Jacques, Glemin Sylvain. 2017. Plant Journal, 91 (4) : pp. 631-645.
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Evolutionary forces affecting synonymous variations in plant genomes. Clément Yves, Sarah Gautier, Holtz Yan, Homa Félix, Pointet Stéphanie, Contreras Sandy, Nabholz Benoit, Sabot François, Sauné Laure, Ardisson Morgane, Bacilieri Roberto, Besnard Guillaume, Berger Angélique, Cardi Céline, De Bellis Fabien, Fouet Olivier, Jourda Cyril, Khadari Bouchaib, Lanaud Claire, Leroy Thierry, Pot David, Sauvage Christopher, Scarcelli Nora, Tregear James, Vigouroux Yves, Yahiaoui Nabila, Ruiz Manuel, Santoni Sylvain, Labouisse Jean-Pierre, Pham Jean Louis, David Jacques, Glemin Sylvain. 2017. PLoS Genetics, 13 (5):e1006799, 28 p.
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A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives. Sarah Gautier, Homa Félix, Pointet Stéphanie, Contreras Sandy, Sabot François, Nabholz Benoit, Santoni Sylvain, Sauné Laure, Ardisson Morgane, Chantret Nathalie, Sauvage Christopher, Tregear James, Jourda Cyril, Pot David, Vigouroux Yves, Chaïr Hâna, Scarcelli Nora, Billot Claire, Yahiaoui Nabila, Bacilieri Roberto, Khadari Bouchaib, Boccara Michel, Barnaud Adeline, Péros Jean-Pierre, Labouisse Jean-Pierre, Pham Jean Louis, David Jacques, Glemin Sylvain, Ruiz Manuel. 2017. Molecular Ecology Resources, 17 (3) : pp. 565-580.
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Gigwa—Genotype investigator for genome-wide analyses. Sempere Guilhem, Philippe Florian, Dereeper Alexis, Ruiz Manuel, Sarah Gautier, Larmande Pierre. 2016. GigaScience, 5 (25), 9 p.
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La diversité génétique des plantes cultivées à l'heure de l'informatique génétique à haut débit: génomique comparative de la domestication. David Jacques, Glemin Sylvain, Sarah Gautier, Nabholz Benoit, Sabot François, Holtz Yan, Homa Félix, Pointet Stéphanie, Contreras Sandy, Sauné Laure, Ardisson Morgane, Bacilieri Roberto, Khadari Bouchaib, Lanaud Claire, Pot David, Sauvage Christopher, Scarcelli Nora, Tregear James, Vigouroux Yves, Yahiaoui Nabila, Ruiz Manuel, Santoni Sylvain, Labouisse Jean-Pierre, Pham Jean Louis. 2016. Le Sélectionneur Français (67) : pp. 3-13.
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Phiv-Rootcell: A supervised image analysis tool for rice root anatomical parameter quantification. Lartaud Marc, Perin Christophe, Courtois Brigitte, Thomas Emilie, Henry Sophia, Bettembourg Mathilde, Divol Malgoire Fanchon, Lanau Nadège, Artus Florence, Bureau Charlotte, Verdeil Jean-Luc, Sarah Gautier, Guiderdoni Emmanuel, Dievart Anne. 2015. Frontiers in Plant Science, 5 (790), 7 p.
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SNiPlay3: A web-based application for exploration and large scale analyses of genomic variations. Dereeper Alexis, Homa Félix, Andres Gwendoline, Sempere Guilhem, Sarah Gautier, Hueber Yann, Dufayard Jean François, Ruiz Manuel. 2015. Nucleic Acids Research, 43 (W1) : W295-W300.
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Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima). Nabholz Benoit, Sarah Gautier, Sabot François, Ruiz Manuel, Adam Hélène, Nidelet Sabine, Ghesquière Alain, Santoni Sylvain, David Jacques, Glemin Sylvain. 2014. Molecular Ecology, 23 (9) : pp. 2210-2227.
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The small RNA profile in latex from Hevea brasiliensis trees is affected by tapping panel dryness. Gebelin Virginie, Leclercq Julie, Kuswanhadi, Argout Xavier, Chaidamsari Tetty, Hu Songnian, Tang Chaorong, Sarah Gautier, Yang Meng, Montoro Pascal. 2013. Tree Physiology, 33 (10) : pp. 1084-1098.
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Guest paper

The South Green Bioinformatics platform, a comprehensive resource for crop genomics. Ruiz Manuel, Dereeper Alexis, Droc Gaëtan, Sarah Gautier, Tranchant-Dubreuil Christine, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, De Lamotte Frédéric, Larmande Pierre, Sabot François, Sempere Guilhem, Summo Marilyne, Pitollat Bertrand, This Dominique, Bocs Stéphanie, Hueber Yann, El Hassouni Nordine, Martin Guillaume, Gkanogiannis Anestis, Ravel Sébastien, Monat Cécile, Tando Ndomassi, Rouard Mathieu. 2017. In : Proceedings X-Meeting 2017. s.l. : s.n., 1 p. International Conference of the AB3. 13, São Pedro, Brésil, 4 October 2017/6 October 2017.
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Paper with proceedings

South Green, une plateforme de bioinformatique tournée vers l'agriculture dans les pays du sud. Ravel Sébastien, Bocs Stéphanie, Brousseau Louise, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, Larmande Pierre, Mahé Frédéric, Martin Guillaume, Orjuela-Bouniol Julie, Pitollat Bertrand, Rouard Mathieu, Ruiz Manuel, Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, Tando Ndomassi, Tranchant-Dubreuil Christine. 2018. In : JOBIM 2018 Abstracts. SFBI, GdR BiM, IFB, AMU, INSERM, CNRS. Marseille : SFBI, pp. 418-420. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2018), Marseille, 3 July 2018/6 July 2018.
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TOGGLE-3: A Framework to Build Quickly Pipelines and to Perform Large-Scale NGS Analysis. [P0469]. Tranchant-Dubreuil Christine, Ravel Sébastien, Monat Cécile, Helou Laura, Diallo Abdoulaye, Sarah Gautier, Orjuela-Bouniol Julie, Sabot François. 2017. In : Proceedings Plant and Animal Genome XXV Conference. San Diego : PAG, 1 p. Plant and Animal Genome Conference. 25, San Diego, États-Unis, 14 January 2017/18 January 2017.
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South Green bioinformatics platform: Update 2015. Armero A., Baurens Franc-Christophe, Bocs Stéphanie, Breil A., De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Garsmeur Olivier, Guignon Valentin, Hamelin Chantal, Hueber Yann, Kougbeadjo Ayite, Larivière Delphine, Larmande Pierre, Lorenzo Jonathan, Martin Guillaume, Monat Cécile, Ndomassi T., Ortega Abboud Enrique, Pitollat Bertrand, Ravel Sébastien, Ranwez Vincent, Rouard Mathieu, Ruiz E., Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, This Dominique, Tranchant-Dubreuil Christine, Vallier Félix. 2015. In : Plant Genomics Congress. Global Engage. Londres : Global Engage, p. 51. Plant Genomics Congress. 3, Londres, Royaume-Uni, 11 May 2015/12 May 2015.
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Analysis of the clone PB 260 transcriptome and evaluation of the number of genes in Hevea brasiliensis. Montoro Pascal, Argout Xavier, Sarah Gautier, Kuswanhadi, Chaidamsari Tetty, Rio Maryannick, Leclercq Julie, Ruiz Manuel. 2010. In : Climate change, low carbon economy and sustainable natural rubber industry : IRRDB International Rubber Conference, Sanya, China, 18-19 October 2010. Chen Qiubo (ed.). IRRDB. Pékin : China agriculture press, pp. 375-377. IRRDB International Rubber Conference, Sanya, Chine, 18 October 2010/19 October 2010.
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Poster

South Green bioinformatic resources for tropical and Mediterranean crops. Rouard Mathieu, Bocs Stéphanie, Breton Catherine, Comte Aurore, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, Larmande Pierre, Lopez David, Mahe Frédéric, Martin Guillaume, Orjuela-Bouniol Julie, Pitollat Bertrand, Ravel Sébastien, Ruiz Manuel, Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, Tando Ndomassi, Tranchant-Dubreuil Christine. 2020. . SFBI, IFB, GDR-BIM. Montpellier : SFBI, 1 p. Journées ouvertes de biologie, informatique et mathématique (JOBIM 2020). 20, Montpellier, France, 30 June 2020/3 July 2020.
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Resources to manage Rice Big Genomics Data. Agret Clément, Gottin Celine, Dereeper Alexis, Tranchant-Dubreuil Christine, Chateau Annie, Diévart Anne, Sarah Gautier, Mancheron Alban, Ruiz Manuel, Droc Gaëtan. 2019. . Taipei : ISFRG, 1 p. International Symposium of Rice Functional Genomics. 17, Taipei, Taïwan / (République de Chine (Taïwan)), 4 November 2019/6 November 2019.
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Insight into the hybrid mosaic structure of cultivated banana genomes. Martin Guillaume, Cardi Céline, Sarah Gautier, Jourda Cyril, Ricci Sebastien, Jenny Christophe, Perrier Xavier, D'Hont Angélique, Glaszmann Jean-Christophe, Yahiaoui Nabila. 2017. In : Plant Genome Evolution 2017. Sitges : s.n., 1 p. Plant Genome Evolution 2017, Sitges, Espagne, 1 October 2017/3 October 2017.
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Genotype investigator for Genome Wide Analysis (GIGwA) [P1111]. Larmande Pierre, Sempere Guilhem, Philippe Florian, Dereeper Alexis, Ruiz Manuel, Sarah Gautier. 2015. In : Plant and Animal Genomes Conference XXIII Conference, San diego, United States, San Diego, United States, January 10-14, 2015. s.l. : s.n., Résumé Plant and Animal Genome Conference. 23, San Diego, États-Unis, 10 January 2015/14 January 2015.
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SINGER, the System wide Information NEtwork on Genetic Resources of CGIAR. Sood Rajesh, Viparthi Kiran, Sarah Gautier, Skofic Milko, Arnaud Elizabeth. 2009. In : Proceedings of TDWG 2009 Annual Conference, Montpellier, France, 9-13 november 2009. ed. by Anna L. Weitzman. Montpellier : Biodiversity Information Standards (TDWG), Résumé, 1 p. TDWG 2009 Annual Conference, Montpellier, France, 9 November 2009/13 November 2009.
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HaploPhyle : graphical haplotype network in the light of external data. Sarah Gautier, Ruiz Manuel, Perrier Xavier, Billot Claire. 2008. In : Journées ouvertes biologie informatique mathématique (JOBIM), Lille, France, 30 juin au 2 juillet 2008. s.l. : s.n., 1 p. Journées ouvertes biologie informatique mathématique, Lille, France, 30 June 2008/2 July 2008.
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Paper without proceedings

South Green resources to manage Rice Big Genomics Data [W682]. Agret Clément, Gottin Celine, Dereeper Alexis, Tranchant-Dubreuil Christine, Chateau Annie, Diévart Anne, Sarah Gautier, Mancheron Alban, Sempere Guilhem, Ruiz Manuel, Droc Gaëtan. 2020. In : Abstracts workshops of the PAG XXVIII. San Diego : PAG, Résumé, p. 302. Plant and Animal Genome. 28, San Diego, États-Unis, 11 January 2020/15 January 2020.
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Genome ancestry mosaics reveal multiple and cryptic contributors to cultivated banana. Martin Guillaume, Cardi Céline, Sarah Gautier, Ricci Sébastien, Jenny Christophe, Fondi Emmanuel, Perrier Xavier, Glaszmann Jean-Christophe, D'Hont Angélique, Yahiaoui Nabila. 2019. . Bordeaux : INRA, Résumé, 1 p. Colloque annuel DynaGeV : Dynamique des génomes végétaux. 5, Bordeaux, France, 14 November 2019/15 November 2019.
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Development of indexing compressed structure for analyzing a collection of similar genomes: application to rice. Agret Clément, Sarah Gautier, Chateau Annie, Mancheron Alban, Ruiz Manuel. 2017. . Lille : CNRS, Résumé, pp. 12-13. Journées Seqbio 2017, Lille, France, 6 November 2017/7 November 2017.
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Insight into the mosaic structure of cultivated banana genomes. Martin Guillaume, Cardi Céline, Sarah Gautier, Jourda Cyril, Ricci Sebastien, Jenny Christophe, Perrier Xavier, D'Hont Angélique, Glaszmann Jean-Christophe, Yahiaoui Nabila. 2016. . Paris : INRA, Résumé, 1 p. Workshop DynaGeV : Dynamique des Génomes Végétaux, Paris, France, 7 July 2016/8 July 2016.
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Modelling the population history using population genomics : the tomato domestication as a case of study. Sauvage Christopher, Aichholz Charlotte, Sarah Gautier, Ruiz Manuel, Causse Mathilde, David Jacques, Glemin Sylvain. 2015. In : The 12th Solanacae Conference SOL2015 book of abstracts. INRA. Villenave-d'Ornon : INRA, p. 97. Solanacae Conference (SOL2015). 12, Bordeaux, France, 25 October 2015/29 October 2015.
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The south green bioinformatics platform : [P988]. Rouard Mathieu, Dereeper Alexis, Droc Gaëtan, Sarah Gautier, Dufayard Jean-François, Guignon Valentin, Hamelin Chantal, Homa Félix, De Lamotte Frédéric, Larmande Pierre, Larivière Delphine, Sabot François, Sempere Guilhem, Summo Marilyne, Pitollat Bertrand, Pointet Stéphanie, This Dominique, Bocs Stéphanie, Ruiz Manuel. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 January 2014/15 January 2014.
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Exploring the Oil Palm Transcriptome: Mechanisms Underlying Reproductive Development. W491. Tranbarger Timothy John, Roongsattham Peerapat, Jantasuriyarat Chatchawan, Dussert Stéphane, Joët Thierry, Champion Anthony, Argout Xavier, Sarah Gautier, Cros David, Omoré Alphonse, Nouy Bruno, Tragoonrung Somvong, Tregear James, Morcillo Fabienne. 2012. In : Plant and Animal Genome XX conference, San Diego, USA, January 14-18 2012,. s.l. : s.n., Résumé, 1 p. Plant and Animal Genome conference. 20, San Diego, États-Unis, 14 January 2012/18 January 2012.
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Role of Galaxy in a bioinformatic plant breeding platform. Maillol Vincent, Bacilieri Roberto, Bocs Stéphanie, Boursiquot Jean-Michel, Carrier Gregory, Dereeper Alexis, Droc Gaëtan, Fleury Cécile, Larmande Pierre, Le Cunff Loïc, Péros Jean-Pierre, Pitollat Bertrand, Ruiz Manuel, Sarah Gautier, Sempere Guilhem, Summo Marilyne, This Patrice, Dufayard Jean-François. 2012. In : Galaxy Community Conference GCC2012, Chicago, Etats-Unis, July 25-27 2012. s.l. : s.n., Résumé, 1 p. Galaxy Community Conference, Chicago, États-Unis, 25 July 2012/27 July 2012.
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This list was generated on Sun Nov 22 10:10:28 2020 CET.