Résultats pour Auteur : "De Kochko, Alexandre"

Adaptive potential of Coffea canephora from Uganda in response to climate change. Oliveira de Aquino Sinara, Kiwuka Catherine, Tournebize Rémi, Gain Clément, Marraccini Pierre, Mariac Cédric, Bethume Kévin, Couderc Marie, Cubry Philippe, Andrade Alan Carvalho, Lepelley Maud, Darracq Olivier, Crouzillat Dominique, Anten Niels P.R., Musoli Pascal, Vigouroux Yves, De Kochko Alexandre, Manel Stéphanie, François Olivier, Poncet Valérie. 2022. Molecular Ecology, 31 (6) : 1800-1819.

Genetic diversity of native and cultivated Ugandan Robusta coffee (Coffea canephora Pierre ex A. Froehner): Climate influences, breeding potential and diversity conservation. Kiwuka Catherine, Goudsmit Eva, Tournebize Rémi, Oliveira de Aquino Sinara, Douma Jacob C., Bellanger Laurence, Crouzillat Dominique, Stoffelen Piet, Sumirat Ucu, Legnaté Hyacinthe, Marraccini Pierre, De Kochko Alexandre, Carvalho Andrade Alan, Wasswa Mulumba John, Musoli Pascal, Anten Niels P.R., Poncet Valérie. 2021. PloS One, 16 (2):e0245965, 19 p.

Amborella - Bearing Witness to the Past? Poncet Valérie, Birnbaum Philippe, Burtet‐Sarramegna Valérie, De Kochko Alexandre, Fogliani Bruno, Gâteblé Gildas, Isnard Sandrine, Jaffré Tanguy, Job Dominique, Munoz François, Munzinger Jérôme, Scutt Charles P., Tournebize Rémi, Trueba Santiago, Pillon Yohan. 2019. Annual Plant Reviews Online, 2 (3) : 867-908.

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Denoeud France, Carretero-Paulet Lorenzo, Dereeper Alexis, Droc Gaëtan, Guyot Romain, Pietrella Marco, Chunfang Zheng, Alberti Adriana, Anthony François, Aprea Giuseppe, Aury Jean-Marc, Bento Pascal, Bernard Maria, Bocs Stéphanie, Campa Claudine, Cenci Alberto, Combes Marie-Christine, Crouzillat Dominique, Da Silva Corinne, Daddiego Loretta, De Bellis Fabien, Dussert Stéphane, Garsmeur Olivier, Gayraud Thomas, Guignon Valentin, Jahn Katharina, Jamilloux Véronique, Joët Thierry, Labadie Karine, Tianying Lan, Leclercq Julie, Lepelley Maud, Leroy Thierry, Lei-Ting Li, Librado Pablo, Lopez Loredana, Muñoz Adriana, Noël Benjamin, Pallavicini Alberto, Perrotta Gaetano, Poncet Valérie, Pot David, Priyono, Rigoreau Michel, Rouard Mathieu, Rozas Julio, Tranchant-Dubreuil Christine, VanBuren Robert, Qiong Zhang, Andrade Alan A., Argout Xavier, Bertrand Benoît, De Kochko Alexandre, Graziosi Giorgio, Henry Robert, Jayarama, Ming Ray, Nagai Chifumi, Rounsley Steve, Sankoff David, Giuliano Giovanni, Albert Victor A., Wincker Patrick, Lashermes Philippe. 2014. Science, 345 (6201) : 1181-1184.

BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution. Dereeper Alexis, Guyot Romain, Tranchant-Dubreuil Christine, Anthony François, Argout Xavier, De Bellis Fabien, Combes Marie-Christine, Gavory Fréderick, De Kochko Alexandre, Kudrna Dave, Leroy Thierry, Poulain Julie, Rondeau Myriam, Song Xiang, Wing Rod A., Lashermes Philippe. 2013. Plant Molecular Biology, 83 (3) : 177-189.

Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades. Guyot Romain, Lefebvre-Pautigny Florent, Tranchant-Dubreuil Christine, Rigoreau Michel, Hamon Perla, Leroy Thierry, Hamon Serge, Poncet Julie, Crouzillat Dominique, De Kochko Alexandre. 2012. BMC Genomics, 13 (103), 14 p.

Improving the quality of African robustas: QTLs for yield- and quality-related traits in Coffea canephora. Leroy Thierry, De Bellis Fabien, Legnaté Hyacinthe, Kananura Edmund, Gonzales Gustavo, Pereira Luiz Filipe P., Andrade Alan Carvalho, Charmetant Pierre, Montagnon Christophe, Cubry Philippe, Marraccini Pierre, Pot David, De Kochko Alexandre. 2011. Tree Genetics and Genomes, 7 (4) : 781-798.

The 'PUCE CAFE' project: The first 15K coffee microarray, a new tool for discovering candidate genes correlated to agronomic and quality traits. Privat Isabelle, Bardil Amélie, Bombarely Gomez Aureliano, Severac Dany, Dantec Christelle, Fuentes Ivanna, Mueller Lukas, Joët Thierry, Pot David, Foucrier Séverine, Dussert Stéphane, Leroy Thierry, Journot Laurent, De Kochko Alexandre, Campa Claudine, Combes Marie-Christine, Lashermes Philippe, Bertrand Benoît. 2011. BMC Genomics, 12 (5), 14 p.

Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae). Hamon Perla, Duroy Pierre-Olivier, Dubreuil-Tranchant Christine, Mafra d'Almeida Costa Paulo, Duret Caroline, Razafinarivo Norosa J., Couturon Emmanuel, Hamon Serge, De Kochko Alexandre, Poncet Valérie, Guyot Romain. 2011. Molecular Genetics and Genomics, 287 (1) : 447-460.

An efficient and rapid protocol for plant nuclear DNA preparation suitable for next generation sequencing methods. Carrier Gregory, Santoni Sylvain, Rodier-Goud Marguerite, Canaguier Aurélie, De Kochko Alexandre, Dubreuil-Tranchant Christine, This Patrice, Boursiquot Jean-Michel, Le Cunff Loïc. 2011. American Journal of Botany, 98 (1), e13-e15

Influence of environmental factors, wet processing and their interactions on the biochemical composition of green Arabica coffee beans. Joët Thierry, Laffargue Andréina, Descroix Frédéric, Doulbeau Sylvie, Bertrand Benoît, De Kochko Alexandre, Dussert Stéphane. 2010. Food Chemistry, 118 (3) : 693-701.

Metabolic pathways in tropical dicotyledonous albuminous seeds : Coffea arabica as a case study. Joët Thierry, Laffargue Andréina, Salmona Jordi, Doulbeau Sylvie, Descroix Frédéric, Bertrand Benoît, De Kochko Alexandre, Dussert Stéphane. 2009. New Phytologist, 182 : 146-162.

MoccaDB. An integrative database for functional, comparative and diversity studies in the Rubiaceae family. Plechakova Olga, Tranchant-Dubreuil Christine, Bénédet Fabrice, Couderc Marie, Tinaut Alexandra, Viader Véronique, De Block Petra, Hamon Perla, Campa Claudine, De Kochko Alexandre, Hamon Serge, Poncet Valérie. 2009. BMC Plant Biology, 9 (123), 11 p.

Deciphering transcriptional networks that govern Coffea arabica seed development using combined cDNA array and real-time RT-PCR approaches. Salmona Jordi, Dussert Stéphane, Descroix Frédéric, De Kochko Alexandre, Bertrand Benoît, Joët Thierry. 2008. Plant Molecular Biology, 66 (1-2) : 105-124.

Development of genomic microsatellite markers in Coffea canephora and their transferability to other coffee species. Poncet Valérie, Dufour Magali, Hamon Perla, Hamon Serge, De Kochko Alexandre, Leroy Thierry. 2007. Genome (Ottawa), 50 (12) : 1156-1161.

Molecular characterization of an ethylene receptor gene (CcETR1) in coffee trees, its relationship with fruit development and caffeine content. Bustamante-Porras José, Campa Claudine, Poncet Valérie, Noirot Michel, Leroy Thierry, Hamon Serge, De Kochko Alexandre. 2007. Molecular Genetics and Genomics, 277 : 701-712.

Sequencing-based molecular markers for wild and cultivated coffee diversity exploration and crop improvement. Vi Tram, Marraccini Pierre, De Kochko Alexandre, Cubry Philippe, Khong Ngan Giang, Poncet Valérie. 2022. In : Coffee science: biotechnological advances, economics, and health benefits. Ramakrishna Akula (ed.), Giridhar Parvatam (ed.), Jeszka-Skowron Magdalena (ed.) (eds.). Boca Raton : CRC Press, 213-220. ISBN 978-0-367-48843-7

Patterns of adaptive genetic variation across Coffea canephora. Poncet Valérie, Tournebize Rémi, Aquino Sinara O., Marraccini Pierre, Mariac Cédric, Bethune Kevin, Andrade Alan Carvalho, Kiwuka Catherine, Crouzillat Dominique, Anten Niels P.R., Manel Stéphanie, De Kochko Alexandre. 2019. In : 27th Biennial ASIC Conference, Portland, 16-20 September 2018. Book of abstracts 2019. ASIC, SCA. Portland : ASIC, Résumé, 1 p. Biennial ASIC Conference. 27, Portland, États-Unis, 16 Septembre 2018/20 Septembre 2018.

Creating new coffee varieties to cope with climate changes: current knowledge and future challenges. Marraccini Pierre, De Aquino Oliveira Sinara, Torres Luana F., Alves G.C.S., Breitler Jean-Christophe, Campa Claudine, Leran Sophie, Villain Luc, Georget Frederic, De Kochko Alexandre, Poncet Valérie, Andrade Alan Carvalho, Etienne Hervé, Bertrand Benoît. 2018. In : Abstracts of 12th IPMB2018. Agropolis Fondation, MUSE, l'INRA, le CNRS, Montpellier SupAgro, l'Université de Montpellier, l'IRD, CIRAD, la SFBV, le Labex Tulip, la SPS, Molecular Plant, The Plant Cell, Communications Biology, la Région Occitanie - Pyrénées/Méditerranée. Montpellier : IPMB, 2 p. Congress of the International Plant Molecular Biology ( IPMB2018). 12, Montpellier, France, 5 Août 2018/10 Août 2018.

Genotipagem por enriquecimento e captura direcionada de genes candidatos em Coffea canephora. De Aquino Sinara Oliveira, Tournebize Rémi, Marraccini Pierre, Mariac Cédric, Couderc Marie, Bethune Kevin, Cubry Philippe, Andrade Alan Carvalho, Darracq Olivier, Lepelley Maud, Crouzillat Dominique, Kiwuka Catherine, Anten Niels P.R., Manel Stéphanie, François Olivier, Vigouroux Yves, De Kochko Alexandre, Poncet Valérie. 2019. In : X Simpósio de Pesquisa dos Cafés do Brasil. Consórcio Pesquisa Café. Vitória : EMBRAPA, 6 p. (Anais do Simpósio de Pesquisa dos Cafés do Brasil, 10) Simpósio de Pesquisa dos Cafés do Brasil. 10, Vitória, Brésil, 8 Octobre 2019/11 Octobre 2019.

Potencial adaptativo de Coffea canephora para projeções das alterações climáticas. De Aquino Sinara Oliveira, Tournebize Rémi, Marraccini Pierre, Mariac Cédric, Couderc Florence, Bethune Kevin, Cubry Philippe, Andrade Alan Carvalho, Darracq Olivier, Lepelley Maud, Crouzillat Dominique, Kiwuka Catherine, Anten Niels P.R., Manel Stéphanie, François Olivier, Vigouroux Yves, De Kochko Alexandre, Poncet Valérie. 2019. In : X Simpósio de Pesquisa dos Cafés do Brasil. Consórcio Pesquisa Café. Vitória : EMBRAPA, 6 p. (Anais do Simpósio de Pesquisa dos Cafés do Brasil, 10) Simpósio de Pesquisa dos Cafés do Brasil. 10, Vitória, Brésil, 8 Octobre 2019/11 Octobre 2019.

Towards the identification of candidate gene nucleic polymorpibsms to predict the adaptedness of ugandense C. canephora populations to climate change. De Aquino Sinara Oliveira, Tournebize Rémi, Marraccini Pierre, Mariac Cédric, Bethune Kevin, Andrade Alan Carvalho, Kiwuka Catherine, Crouzillat Dominique, Anten Niels P.R., De Kochko Alexandre, Poncet Valérie. 2019. In : 27th Biennial ASIC Conference, Portland, 16-20 September 2018. Book of abstracts 2019. ASIC, SCA. Portland : ASIC, Résumé, 1 p. Biennial ASIC Conference. 27, Portland, États-Unis, 16 Septembre 2018/20 Septembre 2018.

Towards a better understanding of the Coffea arabica genome structure. Mueller Lukas, Strickler Susan R., Domingues Douglas S., Pereira Luiz Filipe P., Andrade Alan A., Marraccini Pierre, Ming Ray, Wai Jennifer, Albert Victor A., Giuliano Giovanni, Fiore Alessia, Pietrella Marco, Aprea Giuseppe, Descombes Patrick, Moine Deborah, Guyot Romain, Poncet Valérie, Hamon Perla, Hamon Serge, Tranchant Christine, Couturon Emmanuel, De Kochko Alexandre, Lepelley Maud, Bellanger Laurence, Merot l'Anthoene Virginie, Vandecasteele Céline, Rigoreau Michel, Crouzillat Dominique, Paschoal Rossi Alexandre, Sankoff David, Zheng Chunfang, Kuhn Gerrit, Korlach Jonas, Chin Jason. 2015. In : Proceedings of the 25th International Conference on Coffee Science. ASIC. Paris : ASIC, 42-45. ISBN 978-2-900212-24-0 International Conference on Coffee Science. 25, Armenia, Colombie, 8 Septembre 2014/13 Septembre 2014.

Ancestral synteny is shared between distantly related plant species from the asterid and rosid clades. Guyot Romain, Lefebvre-Pautigny Florent, Tranchant Christine, Rigoreau Michel, Poncet Valérie, Hamon Perla, Leroy Thierry, Hamon Serge, Crouzillat Dominique, De Kochko Alexandre. 2013. In : Proceedings of the 24th International Conference on Coffee Science, San José, Costa Rica, 12th-16th November 2012 = Actes du 24ème Colloque scientifique international sur le café, San José, Costa Rica, 12-16 novembre 2012. ASIC. Paris : ASIC, 527-532. ISBN 978-2-900212-23-3 International Conference on Coffee Science. 24, San José, Costa Rica, 12 Novembre 2012/16 Novembre 2012.

MoccaDB. An integrative database for functional, comparative and diversity studies in the Rubiaceae family. Poncet Valérie, Plechakova Olga, Bénédet Fabrice, Guyot Romain, Couderc Marie, De Block Petra, Hamon Perla, Campa Claudine, De Kochko Alexandre, Hamon Serge, Tranchant-Dubreuil Christine. 2011. In : Proceedings of the 23rd International Conference on Coffee Science; Bali, Indonesia, October 3-8, 2010 = Actes du 23ème Colloque scientifique international sur le café, Bali, Indonésie, 3-8 octobre 2010. ASIC. Paris : ASIC, 389-396. ISBN 978-2-900212-22-6 International Conference on Coffee Science. 23, Bali, Indonésie, 3 Octobre 2010/8 Octobre 2010.

From traditional genetics towards genomics : a new approach for an old problem. Noirot Michel, De Kochko Alexandre, Leroy Thierry, Campa Claudine, Hamon Perla, Dufour Magali, Dussert Stéphane, Jouarn J., Chrestin Hervé. 2001. In : Dix-neuvième colloque scientifique international sur le café. Actes = 19th International scientific colloquium on coffee. Proceedings ; 19. Internationales wissenschaftliches Kolloquium über Kaffee ; 19° Coloquio cientifico internacional sobre el cafe. ASIC. Paris : ASIC, 1 Cd-Rom ISBN 2-900212-18-9 Colloque scientifique international sur le café. 19, Trieste, Italie, 14 Mai 2001/18 Mai 2001.

Towards identification and characterization of candidate genes involved in coffee cup quality. Campa Claudine, Chrestin Hervé, De Kochko Alexandre, Bertrand C., Leroy Thierry, Noirot Michel. 2001. In : Dix-neuvième colloque scientifique international sur le café. Actes = 19th International scientific colloquium on coffee. Proceedings ; 19. Internationales wissenschaftliches Kolloquium über Kaffee ; 19° Coloquio cientifico internacional sobre el cafe. ASIC. Paris : ASIC, 1 Cd-Rom ISBN 2-900212-18-9 Colloque scientifique international sur le café. 19, Trieste, Italie, 14 Mai 2001/18 Mai 2001.

Comparative population genomics of crops and their wild relatives. Glemin Sylvain, Chantret Nathalie, De Kochko Alexandre, Santoni Sylvain, Risterucci Ange-Marie, Morcillo Fabienne, Ruiz Manuel, Pham Jean Louis, David Jacques. 2010. In : Annual Meeting of the Society for Molecular Biology and Evolution, Lyon, France, 04-08 july 2010. s.l. : s.n., 1 p. Annual Meeting of the Society for Molecular Biology and Evolution, Lyon, France, 4 Juillet 2010/8 Juillet 2010.

Development of solid-phase extraction and methylation procedures to analyse free fatty acids in lipid-rich plant materials. Laffargue Andréina, Morcillo Fabienne, De Kochko Alexandre, Dussert Stéphane. 2008. In : 18ème Symposium International sur les Lipides des Plantes (ISPL), 20-25 juillet 2008, Bordeaux, France. s.l. : s.n., 1 p. Symposium International sur les Lipides des Plantes (ISPL). 18, Bordeaux, France, 20 Juillet 2008/25 Juillet 2008.

Patterns of adaptive genetic variation across Coffea canephora. Poncet Valérie, Tournebize Rémi, Aquino Sinara O., Marraccini Pierre, Mariac Cédric, Bethune Kevin, Andrade Alan A., Kiwuka Catherine, Crouzillat Dominique, Anten Niels P.R., Manel Stéphanie, De Kochko Alexandre. 2018. . Montpellier : ESEB, Résumé, 1 p. Joint Congress on Evolutionary Biology, Montpellier, France, 19 Août 2018/22 Août 2018.

Targeted capture of dreb subfamily genes as candidates genes for drought tolerance polymorphism in natural population of coffea canephora. [P1185]. Aquino Sinara O., Marraccini Pierre, Mariac Cédric, Couderc Marie, Bethune Kevin, Andrade Alan Carvalho, Darracq Olivier, Lepelley Maud, Vigouroux Yves, Kiwuka Catherine, Anten Niels P.R., De Kochko Alexandre, Poncet Valérie. 2018. In : Proceedings Plant and Animal Genome XXVI Conference. PAG. San Diego : PAG, Résumé, 1 p. Plant and Animal Genomes Conference. 26, San Diego, États-Unis, 13 Janvier 2018/17 Janvier 2018.

Dihaploid Coffea arabica genome sequencing and assembly [W180]. De Kochko Alexandre, Crouzillat Dominique, Rigoreau Michel, Lepelley Maud, Bellanger Laurence, Merot l'Anthoene Virginie, Vandecasteele Céline, Guyot Romain, Poncet Valérie, Tranchant-Dubreuil Christine, Hamon Perla, Hamon Serge, Couturon Emmanuel, Descombes Patrick, Moine Deborah, Mueller Lukas, Strickler Susan R., Andrade Alan A., Protasio Pereira Luiz Filipe, Marraccini Pierre, Giuliano Giovanni, Fiore Alessia, Pietrella Marco, Aprea Giuseppe, Ming Ray, Wai Jennifer, Domingues Douglas S., Paschoal Alexandre, Kuhn Gerrit, Korlach Jonas, Chin Jason, Sankoff David, Zheng Chunfang, Albert Victor A.. 2015. In : Plant and Animal Genomes Conference XXIII Conference, San diego, United States, San Diego, United States, January 10-14, 2015. s.l. : s.n., Résumé Plant and Animal Genome Conference. 23, San Diego, États-Unis, 10 Janvier 2015/14 Janvier 2015.

Coffea canephora genome sequencing, a tool for comparative genomics and efficient crop improvement (W511). De Kochko Alexandre, Albert Victor A., Andrade Alan Carvalho, Argout Xavier, Bertrand Benoît, Giuliano Giovanni, Graziosi Giorgio, Henry Robert, Jayarama Jayarama, Lashermes Philippe, Ming Ray, Nagai Chifumi, Rounsley Steve, Sankoff David, Wincker Patrick. 2011. In : Abstracts of Plant and Animal Genomes XIXth Conference, San Diego, CA (USA), January 15-19, 2011. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 19, San Diego, États-Unis, 15 Janvier 2011/19 Janvier 2011.

Sequencing the coffee genome (W152). Wincker Patrick, Albert Victor A., Andrade Alan A., Argout Xavier, Bertrand Benoît, De Kochko Alexandre, Giuliano Giovanni, Graziosi Giorgio, Henry Robert, Jayarama Jayarama, Lashermes Philippe, Ming Ray, Nagai Chifumi, Rounsley Steve, Sankoff David. 2011. In : Abstracts of Plant and Animal Genomes XIXth Conference, San Diego, CA (USA), January 15-19, 2011. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 19, San Diego, États-Unis, 15 Janvier 2011/19 Janvier 2011.

Identification of repeated sequences in Coffea genomes. Celarier Marie-Flore, Noirot Michel, Noyer Jean-Louis, De Kochko Alexandre. 2001. . s.l. : s.n., Résumé Plant and Animal Genomes Conference. 9, San Diego, États-Unis, 13 Janvier 2001/17 Janvier 2001.

Mission de prospection. Prospection des riz africains en République populaire révolutionnaire de Guinée. 17 novembre-21 décembre 1982. De Kochko Alexandre, Koffi G.. 1983. Paris : ORSTOM, 2 vol. (16, 103 p.)

Prospection des riz africains en République populaire révolutionnaire de Guinée. 17 novembre-22 décembre 1982. De Kochko Alexandre, Koffi G.. 1983. Paris : ORSTOM, 116 p.