Résultats pour Auteur : "Varsani, Arvind"

Virome release of an invasive exotic plant species in southern France. Moubset Oumaima, Filloux Denis, Fontes Hugo, Julian Charlotte, Fernandez Emmanuel, Galzi Serge, Blondin Laurence, Ben Chehida Sélim, Lett Jean-Michel, Mesleard François, Kraberger Simona, Custer Joy M., Salywon Andrew M., Makings Elizabeth, Marais Armelle, Chiroleu Frédéric, Lefeuvre Pierre, Martin Darren Patrick, Candresse Thierry, Varsani Arvind, Ravigné Virginie, Roumagnac Philippe. 2024. Virus Evolution, 10 (1):veae025, 16 p.

African army ants at the forefront of virome surveillance in a remote tropical forest. Fritz Matthieu, Reggiardo Bérénice, Filloux Denis, Claude Lisa, Fernandez Emmanuel, Mahe Frédéric, Kraberger Simona, Custer Joy M., Becquart Pierre, Mebaley Telsta Ndong, Kombila Linda Bohou, Lenguiya Léadisaelle H., Boundenga Larson, Mombo Illich M., Maganga Gaël Darren, Niama Fabien R., Koumba Jean-Sylvain, Ogliastro Mylène, Yvon Michel, Martin Darren Patrick, Blanc Stéphane, Varsani Arvind, Leroy Eric M., Roumagnac Philippe. 2023. Peer Community Journal, 3:e24, 21 p.

Metagenomics reveals the structure of Mastrevirus-host interaction network within an agro-ecosystem. Claverie Sohini, Hoareau Marie Murielle, Ben Chehida Sélim, Filloux Denis, Varsani Arvind, Roumagnac Philippe, Martin Darren Patrick, Lett Jean-Michel, Lefeuvre Pierre. 2023. Virus Evolution, 9 (2):vead043, 15 p.

Establishment of five new genera in the family Geminiviridae: Citlodavirus, Maldovirus, Mulcrilevirus, Opunvirus, and Topilevirus. Roumagnac Philippe, Lett Jean-Michel, Fiallo-Olivé Elvira, Navas-Castillo Jesús, Zerbini F. Murilo, Martin Darren Patrick, Varsani Arvind. 2022. Archives of Virology, 167 : 695-710.

Virion-associated nucleic acid-based metagenomics: A decade of advances in molecular characterization of plant viruses. Moubset Oumaima, François Sarah, Maclot François, Palanga Essowé, Julian Charlotte, Claude Lisa, Fernandez Emmanuel, Rott Philippe, Daugrois Jean-Heinrich, Antoine-Lorquin Aymeric, Bernardo Pauline, Blouin Arnaud G., Temple Coline, Kraberger Simona, Fontenele Rafaela S, Harkins Gordon William, Ma Yuxin, Marais Armelle, Candresse Thierry, Ben Chehida Sélim, Lefeuvre Pierre, Lett Jean-Michel, Varsani Arvind, Massart Sébastien, Ogliastro Mylène, Martin Darren Patrick, Filloux Denis, Roumagnac Philippe. 2022. Phytopathology, 112 (11) : 2253-2272.

How virulent are emerging maize-infecting mastreviruses? Oyeniran Kehinde A., Hartnady Penelope, Claverie Sohini, Lefeuvre Pierre, Monjane Adérito Luis, Donaldson Lara, Lett Jean-Michel, Varsani Arvind, Martin Darren Patrick. 2021. Archives of Virology, 166 (3) : 955-959.

ICTV Virus Taxonomy Profile: Geminiviridae 2021. Fiallo-Olivé Elvira, Lett Jean-Michel, Martin Darren Patrick, Roumagnac Philippe, Varsani Arvind, Zerbini F. Murilo, Navas-Castillo Jesús. 2021. Journal of General Virology, 102 (12), 2 p.

Identification of the begomoviruses squash leaf curl virus and watermelon chlorotic stunt virus in various plant samples in North America. Fontenele Rafaela S, Bhaskara Amulya, Cobb Ilaria N., Majure Lucas C., Salywon Andrew M., Avalos-Calleros Jesús, Argüello‐Astorga Gerardo R., Schmidlin Kara, Roumagnac Philippe, Ribeiro Simone G., Kraberger Simona, Martin Darren Patrick, Lefeuvre Pierre, Varsani Arvind. 2021. Viruses, 13 (5):810, 17 p.

New world cactaceae plants harbor diverse geminiviruses. Fontenele Rafaela S, Salywon Andrew M., Majure Lucas C., Cobb Ilaria N., Bhaskara Amulya, Avalos‐Callero Jesús A., Argüello‐Astorga Gerardo R., Schmidlin Kara, Khalifeh Anthony, Smith Kendal, Schreck Joshua, Lund Michael, Köhler Matias, Wojciechowski Martin, Hodgson Wendy C., Puente‐Martinez Raul, Van Doorslaer Koenraad, Kumari Safaa G., Oyeniran Kehinde A., Vernière Christian, Filloux Denis, Roumagnac Philippe, Lefeuvre Pierre, Ribeiro Simone G., Kraberger Simona, Martin Darren Patrick, Varsani Arvind. 2021. Viruses, 13 (4):694, 27 p.

Novel circular DNA virus identified in Opuntia discolor (Cactaceae) that codes for proteins with similarity to those of geminiviruses. Fontenele Rafaela S, Köhler Matias, Majure Lucas C., Avalos‐Callero Jesús A., Argüello‐Astorga Gerardo R., Font Fabián, Vidal Andreza H., Roumagnac Philippe, Kraberger Simona, Martin Darren Patrick, Lefeuvre Pierre, Varsani Arvind. 2021. Journal of General Virology, 102 (11), 7 p.

Taxonomy update for the family Alphasatellitidae: New subfamily, genera, and species. Varsani Arvind, Martin Darren Patrick, Randles John W., Vetten H. Josef, Thomas John, Fiallo-Olivé Elvira, Navas-Castillo Jesús, Lett Jean-Michel, Zerbini F. Murilo, Roumagnac Philippe, Gronenborn Bruno. 2021. Archives of Virology, 166 : 3503-3511.

Diverse genomoviruses representing twenty-nine species identified associated with plants. Fontenele Rafaela S, Roumagnac Philippe, Richet Cécile, Kraberger Simona, Stainton Daisy, Aleamotu‘a Maketalena, Filloux Denis, Bernardo Pauline, Harkins Gordon William, McCarthy James, Charles Lachlan S., Lamas Natalia S., Abreu Emanuel F. M., Abreu Rayane A., Batista Graciete B., Lacerda Ana L. M., Salywon Andrew M., Wojciechowski Martin, Majure Lucas C., Martin Darren Patrick, Ribeiro Simone G., Lefeuvre Pierre, Varsani Arvind. 2020. Archives of Virology, 165 (12) : 2891-2901.

RDP5: A computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets. Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe, Botha Gerrit, Maslamoney Suresh, Schwab Tiana, Kelz Zena, Kumar Venkatesh, Murrell Ben. 2020. Virus Evolution, 7 (1):veaa087, 3 p.

Sorghum mastrevirus-associated alphasatellites: New geminialphasatellites associated with an African streak mastrevirus infecting wild Poaceae plants on Reunion Island. Claverie Sohini, Varsani Arvind, Hoareau Murielle, Filloux Denis, Roumagnac Philippe, Martin Darren Patrick, Lefeuvre Pierre, Lett Jean-Michel. 2020. Archives of Virology, 165 (8) : 1925-1928.

Symptom evolution following the emergence of maize streak virus. Monjane Adérito Luis, Dellicour Simon, Hartnady Penelope, Oyeniran Kehinde A., Owor Betty E., Bezeidenhout Marion, Linderme Daphné, Syed Rizwan Ali, Donaldson Lara, Murray Shane, Rybicki Edward P., Kvarnheden Anders, Yazdkhasti Elhman, Lefeuvre Pierre, Froissart Rémy, Roumagnac Philippe, Shepherd Dionne Natalie, Harkins Gordon William, Suchard Marc, Lemey Philippe, Varsani Arvind, Martin Darren Patrick. 2020. eLife, 9:e51984, 19 p.

A novel divergent geminivirus identified in asymptomatic new world cactaceae plants. Fontenele Rafaela S, Salywon Andrew M., Majure Lucas C., Cobb Ilaria N., Bhaskara Amulya, Avalos-Calleros Jesús, Argüello-Astorga Gerardo, Schmidlin Kara, Khalifeh Anthony, Smith Kendal, Schreck Joshua, Lund Michael, Köhler Matias, Wojciechowski Martin, Hodgson Wendy C., Puente-Martinez Raul, Van Doorslaer Koenraad, Kumari Safaa G., Vernière Christian, Filloux Denis, Roumagnac Philippe, Lefeuvre Pierre, Ribeiro Simone G., Kraberger Simona, Martin Darren Patrick, Varsani Arvind. 2020. Viruses, 12 (4):398, 26 p.

Evolution and ecology of plant viruses. Lefeuvre Pierre, Martin Darren Patrick, Elena Santiago F., Shepherd Dionne Natalie, Roumagnac Philippe, Varsani Arvind. 2019. Nature Reviews. Microbiology, 13 p.

Exploring the diversity of Poaceae infecting mastreviruses on Reunion Island using a viral metagenomicsbased approach. Claverie Sohini, Ouattara Alassane, Hoareau Murielle, Filloux Denis, Varsani Arvind, Roumagnac Philippe, Martin Darren Patrick, Lett Jean-Michel, Lefeuvre Pierre. 2019. Scientific Reports, 9:12716, 11 p.

Novel circular DNA viruses associated with Apiaceae and Poaceae from South Africa and New Zealand. Richet Cécile, Kraberger Simona, Filloux Denis, Bernardo Pauline, Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe, Varsani Arvind. 2019. Archives of Virology, 164 (1) : 237-242.

Alphasatellitidae: A new family with two subfamilies for the classication of geminivirus- and nanovirus-associated alphasatellites. Briddon Rob W., Martin Darren Patrick, Roumagnac Philippe, Navas-Castillo Jesús, Fiallo-Olivé Elvira, Moriones Enrique, Lett Jean-Michel, Zerbini F. Murilo, Varsani Arvind. 2018. Archives of Virology, 163 (9) : 2587-2600.

Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale. Bernardo Pauline, Charles-Dominique Tristan, Barakat Mohamed, Ortet Philippe, Fernandez Emmanuel, Filloux Denis, Hartnady Penelope, Rebelo Tony A., Cousins Stephen, Mesleard François, Cohez Damien, Yaverkovski Nicole, Varsani Arvind, Harkins Gordon William, Peterschmitt Michel, Malmstrom Carolyn, Martin Darren Patrick, Roumagnac Philippe. 2018. ISME Journal, 12 : 174-184.

Nanovirus‐alphasatellite complex identi ed in Vicia cracca in the Rhône delta region of France. Gallet Romain, Kraberger Simona, Filloux Denis, Galzi Serge, Fontes Hugo, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2018. Archives of Virology, 163 (3) : 695-700.

Notes on recombination and reassortment in multipartite/segmented viruses. Varsani Arvind, Lefeuvre Pierre, Roumagnac Philippe, Martin Darren Patrick. 2018. Current Opinion in Virology, 33 : 156-166.

The westward journey of alfalfa leaf curl virus. Davoodi Zohreh, Bejerman Nicolás, Richet Cécile, Filloux Denis, Kumari Safaa G., Chatzivassiliou Elisavet K., Galzi Serge, Julian Charlotte, Samarfard Samira, Trucco Verónica, Giolitti Fabián, Fiallo-Olivé Elvira, Navas-Castillo Jesús, Asaad Nader, Rahman Moukahel Abdul, Hijazi Jomana, Mghandef Samia, Heydarnejad Jahangir, Massumi Hossein, Varsani Arvind, Dietzgen Ralf G., Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe. 2018. Viruses, 10 (10):542, 16 p.

Capulavirus and Grablovirus: Two new genera in the family Geminiviridae. Varsani Arvind, Roumagnac Philippe, Fuchs Marc, Navas-Castillo Jesús, Moriones Enrique, Idris Ali, Briddon Rob W., Rivera-Bustamante Rafael, Zerbini F. Murilo, Martin Darren Patrick. 2017. Archives of Virology, 162 (6) : 1819-1831.

Genome sequences of a capulavirus infecting Plantago lanceolata in the Aland archipelago of Finland. Susi Hanna, Laine Anna-Liisa, Filloux Denis, Kraberger Simona, Farkas Kata, Bernardo Pauline, Frilander Mikko J., Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2017. Archives of Virology, 162 (7) : 2041-2045.

ICTV virus taxonomy profile: Geminiviridae. Zerbini F. Murilo, Briddon Rob W., Idris Ali, Martin Darren Patrick, Moriones Enrique, Navas-Castillo Jesús, Rivera-Bustamante Rafael, Roumagnac Philippe, Varsani Arvind. 2017. Journal of General Virology, 98 : 131-133.

Molecular diversity, geographic distribution and host range of monocot-infecting mastreviruses in Africa and surrounding islands. Kraberger Simona, Saumtally A. Salem, Pande Daniel, Khoodoo Michel H.R., Dhayan Sonadall, Dookun-Saumtally Asha, Shepherd Dionne Natalie, Hartnady Penelope, Atkinson Richard, Lakay Francisco, Hanson Britt, Redhi Devasha, Monjane Adérito Luis, Windram Oliver P., Walters Matthew, Oluwafemi Sunday, Lett Jean-Michel, Lefeuvre Pierre, Martin Darren Patrick, Varsani Arvind. 2017. Virus Research, 238 : 171-178.

New strains of chickpea chlorotic dwarf virus discovered on diseased papaya and tomato plants in Burkina Faso. Ouattara Alassane, Tiendrebeogo Fidèle, Lefeuvre Pierre, Hoareau Murielle, Claverie Sohini, Traoré Edgar Valentin, Barro Nicolas, Traoré Oumar, Varsani Arvind, Lett Jean-Michel. 2017. Archives of Virology, 162 (6) : 1791-1794.

Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and Réunion. Boukari Wardatou, Alcala-Briseño Ricardo I., Kraberger Simona, Fernandez Emmanuel, Filloux Denis, Daugrois Jean-Heinrich, Comstock Jack C., Lett Jean-Michel, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe, Polston Jane E., Rott Philippe. 2017. Virology Journal, 14:146, 8 p.

Divergent evolutionary and epidemiological dynamics of cassava mosaic geminiviruses in Madagascar. De Bruyn Alexandre, Harimalala Mireille Aurélie, Zinga Innocent, Mabvakure Batsirai, Hoareau Murielle, Ravigné Virginie, Walters Matthew, Reynaud Bernard, Varsani Arvind, Harkins Gordon William, Martin Darren Patrick, Lett Jean-Michel, Lefeuvre Pierre. 2016. BMC Evolutionary Biology, 16 (182), 21 p.

Diverse circular replication-associated protein encoding viruses circulating in invertebrates within a lake ecosystem. Dayaram Anisha, Galatowitsch Mark L., Argüello-Astorga Gerardo, van Bysterveldt Katherine, Kraberger Simona, Stainton Daisy, Harding Jon S., Roumagnac Philippe, Martin Darren Patrick, Lefeuvre Pierre, Varsani Arvind. 2016. Infection, Genetics and Evolution, 39 : 304-316.

Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa. Bernardo Pauline, Muhire Brejnev, François Sarah, Deshoux Maëlle, Hartnady Penelope, Farkas Kata, Kraberger Simona, Filloux Denis, Fernandez Emmanuel, Galzi Serge, Ferdinand Romain, Granier Martine, Marais Armelle, Monge Blasco Pablo, Candresse Thierry, Escriu Fernando, Varsani Arvind, Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe. 2016. Virology, 493 : 142-153.

Ongoing geographical spread of Tomato yellow leaf curl virus. Mabvakure Batsirai, Martin Darren Patrick, Kraberger Simona, Cloete Leendert, van Brunschot Sharon, Geering Andrew D., Thomas John, Bananej Kaveh, Lett Jean-Michel, Lefeuvre Pierre, Varsani Arvind, Harkins Gordon William. 2016. Virology, 498 : 257-264.

Alfalfa leaf curl virus: an aphid-transmitted geminivirus. Roumagnac Philippe, Granier Martine, Bernardo Pauline, Deshoux Maëlle, Ferdinand Romain, Galzi Serge, Fernandez Emmanuel, Julian Charlotte, Abt Isabelle, Filloux Denis, Mesleard François, Varsani Arvind, Blanc Stéphane, Martin Darren Patrick, Peterschmitt Michel. 2015. Journal of Virology, 89 (18) : 9683-9688.

Identification of novel Bromus- and Trifolium-associated circular DNA viruses. Kraberger Simona, Farkas Kata, Bernardo Pauline, Booker Cameron, Argüello-Astorga Gerardo, Mesleard François, Martin Darren Patrick, Roumagnac Philippe, Varsani Arvind. 2015. Archives of Virology, 160 (5) : 1303-1311.

Appearances can be deceptive: Revealing a hidden viral infection with deep sequencing in a plant quarantine Context. Candresse Thierry, Filloux Denis, Muhire Brejnev, Julian Charlotte, Galzi Serge, Fort Guillaume, Bernardo Pauline, Daugrois Jean-Heinrich, Fernandez Emmanuel, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2014. PloS One, 9 (7):e102945, 13 p.

Evidence of pervasive biologically functional secondary structures within the genomes of eukaryotic single-stranded DNA viruses. Muhizi Muhire Brejnev, Golden Michael, Murrell Ben, Lefeuvre Pierre, Lett Jean-Michel, Gray Alistair J.A., Poon Art Y.F., Kwanele Ngandu Nobubelo, Semegni Jean-Yves, Tanov Emil Pavlov, Monjane Adérito Luis, Harkins Gordon William, Varsani Arvind, Shepherd Dionne Natalie, Martin Darren Patrick. 2014. Journal of Virology, 88 (4) : 1972-1989.

Adaptive evolution by recombination is not associated with increased mutation rates in Maize streak virus. Monjane Adérito Luis, Pande Daniel, Lakay Francisco, Shepherd Dionne Natalie, Van der Walt Eric, Lefeuvre Pierre, Lett Jean-Michel, Varsani Arvind, Rybicki Edward P., Martin Darren Patrick. 2012. BMC Evolutionary Biology, 12 (252), 13 p.

Occurrence of the Israel strain of Tomato yellow leaf curl virus in New Caledonia and Loyalty Islands. Péréfarres Frédéric, De Bruyn Alexandre, Kraberger Simona, Hoareau Murielle, Barjon F., Lefeuvre Pierre, Pellegrin Frédéric, Caplong Philippe, Varsani Arvind, Lett Jean-Michel. 2012. New Disease Reports, 25 (6) : 6.

A novel maize-infecting mastrevirus from La Réunion Island. Pande Daniel, Kraberger Simona, Lefeuvre Pierre, Lett Jean-Michel, Shepherd Dionne Natalie, Varsani Arvind, Martin Darren Patrick. 2012. Archives of Virology, 157 (8) : 1617-1621.

Complete genome sequence of a dahlia common mosaic virus isolate from New Zealand. Hadfield James, Linderme Daphné, Shepherd Dionne Natalie, Bezuidenhout Marion, Lefeuvre Pierre, Martin Darren Patrick, Varsani Arvind. 2011. Archives of Virology, 156 (12) : 2297-2301.

Complex recombination patterns arising during geminivirus coinfections preserve and demarcate biologically important intra-genome interaction networks. Martin Darren Patrick, Lefeuvre Pierre, Varsani Arvind, Hoareau Murielle, Semegni Jean-Yves, Dijoux Betty, Vincent Claire, Reynaud Bernard, Lett Jean-Michel. 2011. PLoS Pathogens, 7 (9):e1002203, 14 p.

Eragrostis minor streak virus: an Asian streak virus in Africa. Martin Darren Patrick, Linderme Daphné, Lefeuvre Pierre, Shepherd Dionne Natalie, Varsani Arvind. 2011. Archives of Virology, 156 (7) : 1299-1303.

Recombination in Eukaryotic single stranded DNA viruses. Martin Darren Patrick, Biagini Philippe, Lefeuvre Pierre, Golden Michael, Roumagnac Philippe, Varsani Arvind. 2011. Viruses, 3 (9) : 1699-1738.

Reconstructing the history of maize streak virus strain a dispersal to reveal diversification hot spots and its origin in Southern Africa. Monjane Adérito Luis, Harkins Gordon William, Martin Darren Patrick, Lemey Philippe, Lefeuvre Pierre, Shepherd Dionne Natalie, Oluwafemi Sunday, Simuyandi Michelo, Zinga Innocent, Komba Ephrem Kosh, Lakoutene Didier P., Mandakombo Noella, Mboukoulida Joseph, Semballa Silla, Tagne Appolinaire, Tiendrebeogo Fidèle, Erdmann Julia B., Van Antwerpen Tania, Owor Betty E., Flett Bradley, Ramusi Moses, Windram Oliver P., Lett Jean-Michel, Briddon Rob W., Markham Peter G., Rybicki Edward P., Varsani Arvind. 2011. Journal of Virology, 85 (18) : 9623-9636.

The spread of Tomato Yellow leaf Curl Virus from the Middle East to the world. Lefeuvre Pierre, Martin Darren Patrick, Harkins Gordon William, Lemey Philippe, Gray Alistair J.A., Meredith Sandra, Lakay Francisco, Monjane Adérito Luis, Lett Jean-Michel, Varsani Arvind. 2010. PLoS Pathogens, 6 (10):e1001164, 12 p.

Comparative analysis of Panicum streak virus and Maize streak virus diversity, recombination patterns and phylogeography. Varsani Arvind, Monjane Adérito Luis, Donaldson Lara, Oluwafemi Sunday, Zinga Innocent, Komba Ephrem Kosh, Plakoutene Didier, Mandakombo Noella, Mboukoulida Joseph, Semballa Silla, Briddon Rob W., Markham Peter G., Lett Jean-Michel, Lefeuvre Pierre, Rybicki Edward P., Martin Darren Patrick. 2009. Virology Journal, 6 (194), 14 p.

Complete genomic sequences of Tomato yellow leaf curl Mali virus isolates infecting tomato and pepper from the north Province of Cameroun. Lett Jean-Michel, Lefeuvre Pierre, Couston Laurent, Hoareau Murielle, Thierry Magalie, Reynaud Bernard, Martin Darren Patrick, Varsani Arvind. 2009. Archives of Virology, 154 (3) : 535-540.

Dating the origins of the maize-adapted strain of maize streak virus, MSV-A. Harkins Gordon William, Martin Darren Patrick, Duffy Siobain, Monjane Adérito Luis, Shepherd Dionne Natalie, Windram Oliver P., Owor Betty E., Donaldson Lara, Van Antwerpen Tania, Sayed Rizwan A., Flett Bradley, Ramusi Moses, Rybicki Edward P., Peterschmitt Michel, Varsani Arvind. 2009. Journal of General Virology, 90 (12) : 3066-3074.

Widely conserved recombination patterns among single-stranded DNA viruses. Lefeuvre Pierre, Lett Jean-Michel, Varsani Arvind, Martin Darren Patrick. 2009. Journal of Virology, 83 (6) : 2697-2707.

Novel sugarcane streak and sugarcane streak Reunion mastreviruses from southern Africa and La Réunion. Shepherd Dionne Natalie, Varsani Arvind, Windram Oliver P., Lefeuvre Pierre, Monjane Adérito Luis, Owor Betty E., Martin Darren Patrick. 2008. Archives of Virology, 153 (3) : 605-609.

Panicum streak virus diversity is similar to that observed for maize streak virus. Varsani Arvind, Oluwafemi Sunday, Windram Oliver P., Shepherd Dionne Natalie, Monjane Adérito Luis, Owor Betty E., Rybicki Edward P., Lefeuvre Pierre, Martin Darren Patrick. 2008. Archives of Virology, 153 (3) : 601-604.

Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen. Varsani Arvind, Shepherd Dionne Natalie, Monjane Adérito Luis, Owor Betty E., Erdmann Julia B., Rybicki Edward P., Peterschmitt Michel, Briddon Rob W., Markham Peter G., Oluwafemi Sunday, Windram Oliver P., Lefeuvre Pierre, Lett Jean-Michel, Martin Darren Patrick. 2008. Journal of General Virology, 89 (9) : 2063-2074.

A protocol for the rapid isolation of full geminivirus genomes from dried plant tissue. Shepherd Dionne Natalie, Martin Darren Patrick, Lefeuvre Pierre, Monjane Adérito Luis, Owor Betty E., Rybicki Edward P., Varsani Arvind. 2008. Journal of Virological Methods, 149 (1) : 97-102.

Begomovirus melting pot in the south-west Indian Ocean islands: Molecular diversity and evolution through recombination. Lefeuvre Pierre, Martin Darren Patrick, Hoareau Murielle, Naze Florence, Delatte Hélène, Thierry Magalie, Varsani Arvind, Becker Nathalie, Reynaud Bernard, Lett Jean-Michel. 2007. Journal of General Virology, 88 (12) : 3458-3468.

From spatial metagenomics to molecular characterization of plant viruses: A geminivirus case study. Claverie Sohini, Bernardo Pauline, Kraberger Simona, Hartnady Penelope, Lefeuvre Pierre, Lett Jean-Michel, Galzi Serge, Filloux Denis, Harkins Gordon William, Varsani Arvind, Martin Darren Patrick, Roumagnac Philippe. 2018. In : Environmental virology and virus ecology. Malmstrom Carolyn M. (ed.). Burlington : Academic Press, 55-83. (Advances in Virus Research, 101) ISBN 978-0-12-814415-2

Once upon a time, the VANA story based on the review "virion-associated nucleic acid-based metagenomics : a decade of advances in molecular characterization of plant viruses". Moubset Oumaima, François Sarah, Maclot François, Palanga Essowé, Julian Charlotte, Claude Lisa, Fernandez Emmanuel, Rott Philippe, Daugrois Jean-Heinrich, Antoine-Lorquin Aymeric, Bernardo Pauline, Blouin Arnaud G., Temple Coline, Kraberger Simona, Fontenele Rafaela S, Harkins Gordon William, Ma Yuxin, Marais Armelle, Candresse Thierry, Ben Chehida Sélim, Lefeuvre Pierre, Lett Jean-Michel, Varsani Arvind, Massart Sébastien, Ogliastro Mylène, Martin Darren Patrick, Filloux Denis, Roumagnac Philippe. 2023. In : 19e Rencontres de virologie végétale (RVV2023). Résumés. SFV, SFP, RIVOC, IRD, INRAE, CNRS, CIRAD, Agropolis. Aussois : SFV, Résumé, p. 91. Rencontres de virologie végétale (RVV2023). 19, Aussois, France, 15 Janvier 2023/19 Janvier 2023.

Cassava mosaic disease in Madagascar: complex epidemiology and evolutionary dynamics of cassava mosaic geminiviruses. Harimalala Mireille Aurélie, De Bruyn Alexandre, Chiroleu Frédéric, Hoareau Murielle, Zinga Innocent, Ranomenjanahary Sahondramalala, Ravigné Virginie, Reynaud Bernard, Varsani Arvind, Harkins Gordon William, Martin Darren Patrick, Lefeuvre Pierre, Lett Jean-Michel. 2016. In : Building bridges between disciplines for sustainable management of plant virus diseases. INRA, Université d'Avignon. Avignon : INRA, Résumé, 107. International Plant Virus Epidemiology Symposium. 13, Avignon, France, 6 Juin 2016/10 Juin 2016.

Geo-metagenomics: deciphering the spatial biodiversity of plant viruses associated with the unique fynbos ecosystem of Southern Africa and its neighbouring agro-ecosystem. Bernardo Pauline, Ortet Philippe, Barakat Mohamed, Rebelo Anthony, Cousins Stephen, Fernandez Emmanuel, Peterschmitt Michel, Filloux Denis, Varsani Arvind, Martin Darren Patrick, Roumagnac Philippe. 2013. In : EMBO Workshop Green Viruses, from Gene to Landscape, 7-11 September 2013, Hyères-les-Palmiers, France : programme and abstracts book. CNRS, UMR BGPI. s.l. : s.n., Résumé, 43. EMBO Workshop Green Viruses, from Gene to Landscape, Hyères-les-Palmier, France, 7 Septembre 2013/11 Septembre 2013.

Viral dynamics: notes from plant-infecting ssDNA viruses. Martin Darren Patrick, Harkins Gordon William, Monjane Adérito Luis, Lefeuvre Pierre, Lett Jean-Michel, Van der Walt Eric, Shepherd Dionne Natalie, Rybicki Edward P., Thomas John, Stainton Daisy, Kraberger Simona, Varsani Arvind. 2013. In : Building bridges between disciplines for sustainable management of plant virus diseases. Lava Kumar P. (ed), Lopez Katherine (ed.), Njuguma Catherine (ed.). ICTVE, IITA. Ibadan : IITA, Résumé, p. 72. ISBN 978-978-8444-08-4 International Plant Virus Epidemiology Symposium. 12, Arusha, Tanzanie, 28 Janvier 2013/1 Février 2013.

Global geographical distribution of capulaviruses. [P.42]. Galzi Serge, Filloux Denis, Richet Cécile, Julian Charlotte, Ferdinand Romain, Davoodi Zohreh, Bejerman Nicolás, Kumari Safaa G., Chatzivassiliou Elisavet K., Fiallo-Olivé Elvira, Navas-Castillo Jesús, Susi Hanna, Laine Anna-Liisa, Varsani Arvind, Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, 101. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 Janvier 2019/31 Janvier 2019.

Metagenomics-based discovery and molecular characterization of a novel sugarcane mastrevirus. [P13]. Fernandez Emmanuel, Boukari Wardatou, Alcala-Briseño Ricardo I., Kraberger Simona, Filloux Denis, Lett Jean-Michel, Lefeuvre Pierre, Comstock Jack C., Daugrois Jean-Heinrich, Varsani Arvind, Polston Jane E., Rott Philippe, Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, 74. Rencontres de virologie végétale, Aussois, France, 15 Janvier 2017/19 Janvier 2017.

Spatial metagenomics illuminate the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale. Roumagnac Philippe, Bernardo Pauline, Charles-Dominique Tristan, Fernandez Emmanuel, Filloux Denis, Ortet Philippe, Barakat Mohamed, Rebelo Tony A., Cousins Stephen, Mesleard François, Cohez Damien, Yaverkovski Nicole, Varsani Arvind, Harkins Gordon William, Peterschmitt Michel, Malmstrom Carolyn M., Martin Darren Patrick. 2017. . Paris : INRA, 93. International Conference on Holobionts, Paris, France, 19 Avril 2017/21 Avril 2017.

Identification of a new Mastrevirus of Saccharum barberi, Saccharum officinarum and Saccharum spontaneum in Florida. Boukari Wardatou, Alcala-Briseño Ricardo I., Kraberger Simona, Fernandez Emmanuel, Filloux Denis, Comstock Jack C., Varsani Arvind, Roumagnac Philippe, Polston Jane E., Rott Philippe. 2016. . Tampa : s.n., Résumé, 1-2. APS annual meeting, Tampa, États-Unis, 30 Juillet 2016/3 Août 2016.

Cassava mosaic disease in Madagascar: complex epidemiology and evolutionary dynamics of cassava mosaic geminiviruses. [P.44]. De Bruyn Alexandre, Harimalala Mireille Aurélie, Chiroleu Frédéric, Hoareau Murielle, Ranomenjanahary Sahondramalala, Ravigné Virginie, Reynaud Bernard, Varsani Arvind, Martin Darren Patrick, Lefeuvre Pierre, Lett Jean-Michel. 2015. In : 15èmes Rencontres de Virologie Végétale, Aussois, France, 18-22 janvier 2015. CIRAD ; IRD. s.l. : s.n., Résumé, 102. Rencontres de virologie végétale. 15, Aussois, France, 18 Janvier 2015/22 Janvier 2015.

Deciphering plant virus ecology and evolution using metagenomics-based approaches. Filloux Denis, Lefeuvre Pierre, Lett Jean-Michel, Varsani Arvind, Harkins Gordon William, Malmstrom Carolyn M., Martin Darren Patrick, Roumagnac Philippe. 2019. . State College : s.n., Résumé, 1 p. International Congress on Virus Evolution. 10, State College, États-Unis, 7 Mars 2019/9 Mars 2019.

Novel divergent geminivirus infecting Cactaceae plants. Fontenele Rafaela S, Cobb Ilaria N., Khalifeh Anthony, Smith Kendal, Schreck Joshua, Schmidlin Kara, Kraberger Simona, Majure Lucas C., Salywon Andrew M., Köhler Matias, Wojciechowski Martin, Lund Michael, Van Doorslaer Koenraad, Roumagnac Philippe, Lefeuvre Pierre, Kumari Safaa G., Ribeiro Simone G., Varsani Arvind. 2019. In : Programme and abstracts of the 9th International Germinivirus Symposium (IGS 2019) and the 7th ssDNA Comparative virology workshop. University of California. Davis : University of California, Résumé, 42-43. International Geminivirus Symposium. 9, Davis, États-Unis, 9 Novembre 2019/13 Novembre 2019.

Symptom evolution following the emergence of maize streak virus. Monjane Adérito Luis, Dellicour Simon, Hartnady Penelope, Oyeniran Kehinde A., Owor Betty E., Bezeidenhout Marion, Linderme Daphné, Syed Rizwan Ali, Donaldson Lara, Murray Shane, Rybicki Edward P., Kvarnheden Anders, Yazdkhasti Elhman, Lefeuvre Pierre, Froissart Rémy, Roumagnac Philippe, Shepherd Dionne Natalie, Harkins Gordon William, Suchard Marc, Lemey Philippe, Varsani Arvind, Martin Darren Patrick. 2019. In : Programme and abstracts of the 9th International Germinivirus Symposium (IGS 2019) and the 7th ssDNA Comparative virology workshop. University of California. Davis : University of California, Résumé, 21-22. International Geminivirus Symposium. 9, Davis, États-Unis, 9 Novembre 2019/13 Novembre 2019.

Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale. O13. Bernardo Pauline, Charles-Dominique Tristan, Barakat Mohamed, Ortet Philippe, Fernandez Emmanuel, Filloux Denis, Hartnady Penelope, Rebelo Tony A., Cousins Stephen, Mesleard François, Cohez Damien, Yaverkovski Nicole, Varsani Arvind, Harkins Gordon William, Peterschmitt Michel, Malmstrom Carolyn, Martin Darren Patrick, Roumagnac Philippe. 2018. In : Book of abstract Pathobiome 2018. INRA. Ajaccio : INRA, Résumé, 25-26. Pathobiome, Ajaccio, France, 18 Mars 2018/20 Mars 2018.

Deciphering plant-associated viruses at the agroecosystem scale using geometagenomics. Charles-Dominique Tristan, Fernandez Emmanuel, Filloux Denis, Ortet Philippe, Barakat Mohamed, Rebelo Tony A., Varsani Arvind, Malmstrom Carolyn M., Martin Darren Patrick, Roumagnac Philippe. 2016. . University of Helsinki. Helsinki : University of Helsinki, Résumé, 1 p. International Meeting on Wild Plant Pathosystems. 2, Helsinki, Finlande, 29 Août 2016/31 Août 2016.

Characterization of novel, highly divergent geminiviruses and insights into the evolutionary history of geminiviruses. Bernardo Pauline, Ortet Philippe, Barakat Mohamed, Rebelo Anthony, Cousins Stephen, Fernandez Emmanuel, Mesleard François, Peterschmitt Michel, Filloux Denis, Varsani Arvind, Martin Darren Patrick, Roumagnac Philippe. 2013. In : 7th International Geminvirus Symposium and 5th International ssDNA Comparative Virology Workshop, Hangzhou, China, November 3-9, 2013. s.l. : s.n., Résumé, 1 p. International Geminvirus Symposium. 7, Hangzhou, Chine, 3 Novembre 2013/9 Novembre 2013.

East African cassava mosaic-like viruses from Africa to Indian Ocean Islands: Molecular diversity, evolutionary history and geographical dissemination of a bipartite begomovirus. De Bruyn Alexandre, Villemot Julie, Lefeuvre Pierre, Villar Emilie, Hoareau Murielle, Harimalala Mireille Aurélie, Abdoul-Karime Anli Liachouroutu, Abdou-Chakour C., Reynaud Bernard, Harkins Gordon William, Varsani Arvind, Martin Darren Patrick, Lett Jean-Michel. 2013. In : 14èmes Rencontres de virologie végétale (RVV 2013) : Aussois, France, 13-17 janvier 2013. Marais Armelle (ed.), Revers Frédéric (ed.). SFP, INRA. Paris : SFP, Résumé, 14. Rencontres de Virologie Végétale. 14, Aussois, France, 13 Janvier 2013/17 Janvier 2013.

Geo-metagenomics: deciphering the spatial biodiversity of ssDNA viruses associated with Western Cape and Camargue agroecosystems. Bernardo Pauline, Ortet Philippe, Barakat Mohamed, Rebelo Anthony, Cousins Stephen, Fernandez Emmanuel, Mesleard François, Peterschmitt Michel, Filloux Denis, Varsani Arvind, Martin Darren Patrick, Roumagnac Philippe. 2013. In : 7th International Geminvirus Symposium and 5th International ssDNA Comparative Virology Workshop, Hangzhou, China, November 3-9, 2013. s.l. : s.n., Résumé, 1 p. International Geminvirus Symposium. 7, Hangzhou, Chine, 3 Novembre 2013/9 Novembre 2013.

The spread of tomato yellow leaf curl virus from the middle east to the World. Lefeuvre Pierre, Martin Darren Patrick, Harkins Gordon William, Lemey Philippe, Gray Alistair J.A., Meredith Sandra, Lakay Francisco, Monjane Adérito Luis, Lett Jean-Michel, Varsani Arvind. 2011. In : 13èmes Rencontres de virologie végétale (RVV 2011), Aussois, France, 16-20 janvier 2011. SFP. s.l. : s.n., 1 p. Rencontres de virologie végétale. 13, Aussois, France, 16 Janvier 2011/20 Janvier 2011.