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Genome sequences of a capulavirus infecting Plantago lanceolata in the Aland archipelago of Finland. Susi Hanna, Laine Anna-Liisa, Filloux Denis, Kraberger Simona, Farkas Kata, Bernardo Pauline, Frilander Mikko J., Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2017. Archives of Virology, 162 (7) : 2041-2045.

Molecular diversity, geographic distribution and host range of monocot-infecting mastreviruses in Africa and surrounding islands. Kraberger Simona, Saumtally A. Salem, Pande Daniel, Khoodoo Michel H.R., Dhayan Sonadall, Dookun-Saumtally Asha, Shepherd Dionne Natalie, Hartnady Penelope, Atkinson Richard, Lakay Francisco, Hanson Britt, Redhi Devasha, Monjane Adérito Luis, Windram Oliver P., Walters Matthew, Oluwafemi Sunday, Lett Jean-Michel, Lefeuvre Pierre, Martin Darren Patrick, Varsani Arvind. 2017. Virus Research, 238 : 171-178.

Divergent evolutionary and epidemiological dynamics of cassava mosaic geminiviruses in Madagascar. De Bruyn Alexandre, Harimalala Mireille Aurélie, Zinga Innocent, Mabvakure Batsirai, Hoareau Murielle, Ravigné Virginie, Walters Matthew, Reynaud Bernard, Varsani Arvind, Harkins Gordon William, Martin Darren Patrick, Lett Jean-Michel, Lefeuvre Pierre. 2016. BMC Evolutionary Biology, 16 (182), 21 p.

Diverse circular replication-associated protein encoding viruses circulating in invertebrates within a lake ecosystem. Dayaram Anisha, Galatowitsch Mark L., Argüello-Astorga Gerardo, van Bysterveldt Katherine, Kraberger Simona, Stainton Daisy, Harding Jon S., Roumagnac Philippe, Martin Darren Patrick, Lefeuvre Pierre, Varsani Arvind. 2016. Infection, Genetics and Evolution, 39 : 304-316.

Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa. Bernardo Pauline, Muhire Brejnev, François Sarah, Deshoux Maëlle, Hartnady Penelope, Farkas Kata, Kraberger Simona, Filloux Denis, Fernandez Emmanuel, Galzi Serge, Ferdinand Romain, Granier Martine, Marais Armelle, Monge Blasco Pablo, Candresse Thierry, Escriu Fernando, Varsani Arvind, Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe. 2016. Virology, 493 : 142-153.

Ongoing geographical spread of Tomato yellow leaf curl virus. Mabvakure Batsirai, Martin Darren Patrick, Kraberger Simona, Cloete Leendert, van Brunschot Sharon, Geering Andrew D., Thomas John, Bananej Kaveh, Lett Jean-Michel, Lefeuvre Pierre, Varsani Arvind, Harkins Gordon William. 2016. Virology, 498 : 257-264.

Identification of novel Bromus- and Trifolium-associated circular DNA viruses. Kraberger Simona, Farkas Kata, Bernardo Pauline, Booker Cameron, Argüello-Astorga Gerardo, Mesleard François, Martin Darren Patrick, Roumagnac Philippe, Varsani Arvind. 2015. Archives of Virology, 160 (5) : 1303-1311.

Appearances can be deceptive: Revealing a hidden viral infection with deep sequencing in a plant quarantine Context. Candresse Thierry, Filloux Denis, Muhire Brejnev, Julian Charlotte, Galzi Serge, Fort Guillaume, Bernardo Pauline, Daugrois Jean-Heinrich, Fernandez Emmanuel, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2014. PloS One, 9 (7):e102945, 13 p.

Evidence of pervasive biologically functional secondary structures within the genomes of eukaryotic single-stranded DNA viruses. Muhizi Muhire Brejnev, Golden Michael, Murrell Ben, Lefeuvre Pierre, Lett Jean-Michel, Gray Alistair J.A., Poon Art Y.F., Kwanele Ngandu Nobubelo, Semegni Jean-Yves, Tanov Emil Pavlov, Monjane Adérito Luis, Harkins Gordon William, Varsani Arvind, Shepherd Dionne Natalie, Martin Darren Patrick. 2014. Journal of Virology, 88 (4) : 1972-1989.

Complete genome sequence of a dahlia common mosaic virus isolate from New Zealand. Hadfield James, Linderme Daphné, Shepherd Dionne Natalie, Bezuidenhout Marion, Lefeuvre Pierre, Martin Darren Patrick, Varsani Arvind. 2011. Archives of Virology, 156 (12) : 2297-2301.

Complex recombination patterns arising during geminivirus coinfections preserve and demarcate biologically important intra-genome interaction networks. Martin Darren Patrick, Lefeuvre Pierre, Varsani Arvind, Hoareau Murielle, Semegni Jean-Yves, Dijoux Betty, Vincent Claire, Reynaud Bernard, Lett Jean-Michel. 2011. PLoS Pathogens, 7 (9):e1002203, 14 p.

Eragrostis minor streak virus: an Asian streak virus in Africa. Martin Darren Patrick, Linderme Daphné, Lefeuvre Pierre, Shepherd Dionne Natalie, Varsani Arvind. 2011. Archives of Virology, 156 (7) : 1299-1303.

Recombination in Eukaryotic single stranded DNA viruses. Martin Darren Patrick, Biagini Philippe, Lefeuvre Pierre, Golden Michael, Roumagnac Philippe, Varsani Arvind. 2011. Viruses, 3 (9) : 1699-1738.

Reconstructing the history of maize streak virus strain a dispersal to reveal diversification hot spots and its origin in Southern Africa. Monjane Adérito Luis, Harkins Gordon William, Martin Darren Patrick, Lemey Philippe, Lefeuvre Pierre, Shepherd Dionne Natalie, Oluwafemi Sunday, Simuyandi Michelo, Zinga Innocent, Komba Ephrem Kosh, Lakoutene Didier P., Mandakombo Noella, Mboukoulida Joseph, Semballa Silla, Tagne Appolinaire, Tiendrebeogo Fidèle, Erdmann Julia B., Van Antwerpen Tania, Owor Betty E., Flett Bradley, Ramusi Moses, Windram Oliver P., Lett Jean-Michel, Briddon Rob W., Markham Peter G., Rybicki Edward P., Varsani Arvind. 2011. Journal of Virology, 85 (18) : 9623-9636.

Geo-metagenomics: deciphering the spatial biodiversity of plant viruses associated with the unique fynbos ecosystem of Southern Africa and its neighbouring agro-ecosystem. Bernardo Pauline, Ortet Philippe, Barakat Mohamed, Rebelo Anthony, Cousins Stephen, Fernandez Emmanuel, Peterschmitt Michel, Filloux Denis, Varsani Arvind, Martin Darren Patrick, Roumagnac Philippe. 2013. In : EMBO Workshop Green Viruses, from Gene to Landscape, 7-11 September 2013, Hyères-les-Palmiers, France : programme and abstracts book. CNRS, UMR BGPI. s.l. : s.n., Résumé, 43. EMBO Workshop Green Viruses, from Gene to Landscape, Hyères-les-Palmier, France, 7 Septembre 2013/11 Septembre 2013.

Viral dynamics: notes from plant-infecting ssDNA viruses. Martin Darren Patrick, Harkins Gordon William, Monjane Adérito Luis, Lefeuvre Pierre, Lett Jean-Michel, Van der Walt Eric, Shepherd Dionne Natalie, Rybicki Edward P., Thomas John, Stainton Daisy, Kraberger Simona, Varsani Arvind. 2013. In : Building bridges between disciplines for sustainable management of plant virus diseases. Lava Kumar P. (ed), Lopez Katherine (ed.), Njuguma Catherine (ed.). ICTVE, IITA. Ibadan : IITA, Résumé, p. 72. ISBN 978-978-8444-08-4 International Plant Virus Epidemiology Symposium. 12, Arusha, Tanzanie, 28 Janvier 2013/1 Février 2013.

Spatial metagenomics illuminate the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale. Roumagnac Philippe, Bernardo Pauline, Charles-Dominique Tristan, Fernandez Emmanuel, Filloux Denis, Ortet Philippe, Barakat Mohamed, Rebelo Tony A., Cousins Stephen, Mesleard François, Cohez Damien, Yaverkovski Nicole, Varsani Arvind, Harkins Gordon William, Peterschmitt Michel, Malmstrom Carolyn M., Martin Darren Patrick. 2017. . Paris : INRA, 93. International Conference on Holobionts, Paris, France, 19 Avril 2017/21 Avril 2017.

Identification of a new Mastrevirus of Saccharum barberi, Saccharum officinarum and Saccharum spontaneum in Florida. Boukari Wardatou, Alcala-Briseño Ricardo I., Kraberger Simona, Fernandez Emmanuel, Filloux Denis, Comstock Jack C., Varsani Arvind, Roumagnac Philippe, Polston Jane E., Rott Philippe. 2016. . Tampa : s.n., Résumé, 1-2. APS annual meeting, Tampa, États-Unis, 30 Juillet 2016/3 Août 2016.

Cassava mosaic disease in Madagascar: complex epidemiology and evolutionary dynamics of cassava mosaic geminiviruses. [P.44]. De Bruyn Alexandre, Harimalala Mireille Aurélie, Chiroleu Frédéric, Hoareau Murielle, Ranomenjanahary Sahondramalala, Ravigné Virginie, Reynaud Bernard, Varsani Arvind, Martin Darren Patrick, Lefeuvre Pierre, Lett Jean-Michel. 2015. In : 15èmes Rencontres de Virologie Végétale, Aussois, France, 18-22 janvier 2015. CIRAD ; IRD. s.l. : s.n., Résumé, 102. Rencontres de virologie végétale. 15, Aussois, France, 18 Janvier 2015/22 Janvier 2015.

IBISCA : une étude à grande échelle de la biodiversité des arthropodes dans une forêt du Panama. Corbara Bruno, Basset Yves, Barrios Hector, Aberlenc Henri-Pierre, Bail Johannes, Cabrera Rosario, Cizek Lukas, Cornejo Aydee, Curletti Gianfranco, Déjean Alain, Didham Raphael K., Fagan Laura, Floren Andreas, Frame Dawn, Gonzalez Mario, Hallé Francis, Hernandez Andres, Herrera Jorge, Jordan Kevin, Kitching Roger, Leponce Maurice, Manumbor Markus, Medianero Enrique, Mogia Martin, Oliveira Evandro, Odegaard Frode, Orivel Jérôme, Perez Betzi, Pinzon Sara, Ribeiro Servio, Roisin Yves, Roubik David, Samaniego Mirna, Schmidl Jürgen, Tishechkin Alexey, Valdez Oldemar, Winchester Neville, Wright S. Joseph. 2004. In : Biodiversité et changement global, dynamique des interactions : actes des deuxièmes journées de l'Institut français de la biodiversité, Marseille, 25-28 mai 2004. IFB. Paris : IFB [Institut français de la biodiversité], 115. Journées de l'Institut français de la biodiversité. 2, Marseille, France, 25 Mai 2004/28 Mai 2004.

Deciphering plant-associated viruses at the agroecosystem scale using geometagenomics. Charles-Dominique Tristan, Fernandez Emmanuel, Filloux Denis, Ortet Philippe, Barakat Mohamed, Rebelo Tony A., Varsani Arvind, Malmstrom Carolyn M., Martin Darren Patrick, Roumagnac Philippe. 2016. . University of Helsinki. Helsinki : University of Helsinki, Résumé, 1 p. International Meeting on Wild Plant Pathosystems. 2, Helsinki, Finlande, 29 Août 2016/31 Août 2016.

Characterization of novel, highly divergent geminiviruses and insights into the evolutionary history of geminiviruses. Bernardo Pauline, Ortet Philippe, Barakat Mohamed, Rebelo Anthony, Cousins Stephen, Fernandez Emmanuel, Mesleard François, Peterschmitt Michel, Filloux Denis, Varsani Arvind, Martin Darren Patrick, Roumagnac Philippe. 2013. In : 7th International Geminvirus Symposium and 5th International ssDNA Comparative Virology Workshop, Hangzhou, China, November 3-9, 2013. s.l. : s.n., Résumé, 1 p. International Geminvirus Symposium. 7, Hangzhou, Chine, 3 Novembre 2013/9 Novembre 2013.

East African cassava mosaic-like viruses from Africa to Indian Ocean Islands: Molecular diversity, evolutionary history and geographical dissemination of a bipartite begomovirus. De Bruyn Alexandre, Villemot Julie, Lefeuvre Pierre, Villar Emilie, Hoareau Murielle, Harimalala Mireille Aurélie, Abdoul-Karime Anli Liachouroutu, Abdou-Chakour C., Reynaud Bernard, Harkins Gordon William, Varsani Arvind, Martin Darren Patrick, Lett Jean-Michel. 2013. In : 14èmes Rencontres de virologie végétale (RVV 2013) : Aussois, France, 13-17 janvier 2013. Marais Armelle (ed.), Revers Frédéric (ed.). SFP, INRA. Paris : SFP, Résumé, 14. Rencontres de Virologie Végétale. 14, Aussois, France, 13 Janvier 2013/17 Janvier 2013.

Geo-metagenomics: deciphering the spatial biodiversity of ssDNA viruses associated with Western Cape and Camargue agroecosystems. Bernardo Pauline, Ortet Philippe, Barakat Mohamed, Rebelo Anthony, Cousins Stephen, Fernandez Emmanuel, Mesleard François, Peterschmitt Michel, Filloux Denis, Varsani Arvind, Martin Darren Patrick, Roumagnac Philippe. 2013. In : 7th International Geminvirus Symposium and 5th International ssDNA Comparative Virology Workshop, Hangzhou, China, November 3-9, 2013. s.l. : s.n., Résumé, 1 p. International Geminvirus Symposium. 7, Hangzhou, Chine, 3 Novembre 2013/9 Novembre 2013.

The spread of tomato yellow leaf curl virus from the middle east to the World. Lefeuvre Pierre, Martin Darren Patrick, Harkins Gordon William, Lemey Philippe, Gray Alistair J.A., Meredith Sandra, Lakay Francisco, Monjane Adérito Luis, Lett Jean-Michel, Varsani Arvind. 2011. In : 13èmes Rencontres de virologie végétale (RVV 2011), Aussois, France, 16-20 janvier 2011. SFP. s.l. : s.n., 1 p. Rencontres de virologie végétale. 13, Aussois, France, 16 Janvier 2011/20 Janvier 2011.