Use of SSR markers and FTIR chemometrics to assess the nobility of kava cultivars from the Pacific

Lebot Vincent, Labouisse Jean-Pierre, Rivallan Ronan, Kaoh Juliane, Davrieux Fabrice. 2024. Use of SSR markers and FTIR chemometrics to assess the nobility of kava cultivars from the Pacific. Food Control, 164:110598, 11 p.

https://doi.org/10.1016/j.foodcont.2024.110598

Article de revue ; Article de recherche ; Article de revue à facteur d'impact

Version publiée - Anglais
Accès réservé aux personnels Cirad
Utilisation soumise à autorisation de l'auteur ou du Cirad.
Use of SSR markers and FTIR chemometrics to assess the nobility of kava_Food Control_2024.pdf
Télécharger (3MB) | Demander une copie

Résumé : According to the FAO/WHO Codex Alimentarius regional standards for kava (Piper methysticum Forst. f.), only Noble cultivars shall be used as raw material. Other P. methysticum cultivars and wild forms (P. m. var. wichmannii C.DC.) are excluded from trade. There is a need for accurate identification tools as morpho-agronomic descriptors are influenced by growing conditions and once kava roots have been harvested, it is visually impossible to differentiate Noble cultivars from others. In the present study, 163 leaf samples originating from Papua New Guinea, the Solomon Islands, Vanuatu, Fiji, Tahiti, Hawaii and Pohnpei were analyzed using 13 microsatellite (Single Sequence Repeat, SSR) markers. Hierarchical Clustering Analysis (HCA) and Multiple Correspondence Analysis (MCA) clearly differentiated five groups: Nobles from Polynesia, Nobles from Vanuatu, Two-day cultivars from Vanuatu, var. wichmannii from Vanuatu and P. methysticum cultivars for Papua New Guinea. Fourier Transform InfraRed (FTIR) was used to assess its potential as a high throughput analytical tool to detect nobility. FTIR spectra (1800-800 cm−1) from 138 root powder samples were analyzed using Principal Component Analysis (PCA). Nobles from Vanuatu and from Polynesia were not differentiated from each other but were differentiated from poor quality P. methysticum cultivars and from var. wichmannii. Linear Discriminant Analysis (LDA) improved the differentiation of Nobles from others. Samples were then classified in two groups: Nobles (Vanuatu + Polynesia) and non-Nobles. A learning and a test sets were composed at random. PLS-DA (Partial Least Square Discriminant Analysis) allowed the differentiation of Nobles with a prediction accuracy over 96.9%. FTIR has potential for kava quality control. The method described here is simple, fast, eco-friendly, and requires less than 0.5 g of root powder. Its routine application could greatly contribute to guarantee kava quality and protect the international markets.

Mots-clés Agrovoc : Piper methysticum, variété, marqueur génétique, spectroscopie infrarouge, variation génétique, germoplasme, génotype

Mots-clés géographiques Agrovoc : Papouasie-Nouvelle-Guinée, Vanuatu, France, Hawaï, Fidji, Polynésie française, Guinée, Micronésie (États fédérés de), Îles Salomon

Mots-clés libres : Kava, Piper methysticum, Marqueurs de progrès, Diversité, FT-IR

Classification Agris : F30 - Génétique et amélioration des plantes
F01 - Culture des plantes

Champ stratégique Cirad : CTS 2 (2019-) - Transitions agroécologiques

Agences de financement hors UE : Ministère des Affaires Etrangères, International Atomic Energy Agency, Fonds français pour le Pacifique

Auteurs et affiliations