How genomics can help biodiversity conservation

Theissinger Kathrin, Fernandes Carlos, Formenti Giulio, Bista Iliana, Berg Paul R., Bleidorn Christoph, Bombarely Aureliano, Crottini Angelica, Gallo Guido R., Godoy José A., Jentoft Sissel, Malukiewicz Joanna, Mouton Alice, Oomen Rebekah A., Paez Sadye, Palsbøll Per J., Pampoulie Christophe, Ruiz-López María J., Secomandi Simona, Svardal Hannes, Theofanopoulou Constantina, de Vries Jan, Waldvogel Ann-Marie, Zhang Guojie, Jarvis Erich D., Bálint Miklós, Ciofi Claudio, Waterhouse Robert M., Mazzoni Camila J., Höglund Jacob, Aghayan Sargis A., Alioto Tyler S., Almudi Isabel, Alvarez Nadir, Alves Paulo, Amorim do Rosario Isabel R., Antunes Agostino, Arribas Paula, Baldrian Petr, Bertorelle Giorgio, Böhne Astrid, Bonisoli-Alquati Andrea, Boštjančić Ljudevit L., Boussau Bastien, Breton Catherine, et al.. 2023. How genomics can help biodiversity conservation. Trends in Genetics, 39 (7) : 545-559.

Résumé : The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering practical factors, such as cost, time, prerequisite skills, and current shortcomings of applications. Most approaches perform best in combination with reference genomes from the target species or closely related species. We review case studies to illustrate how reference genomes can facilitate biodiversity research and conservation across the tree of life. We conclude that the time is ripe to view reference genomes as fundamental resources and to integrate their use as a best practice in conservation genomics.

Mots-clés Agrovoc : génome, biodiversité, génomique, conservation des ressources, conservation de la diversité biologique, espèce en danger, bioinformatique

Mots-clés libres : Anthropocene, Biodiversity genomics, Genomic toolbox, Reference genomes, Conservation applications, European Reference, Genome Atlas (ERGA)

Auteurs et affiliations

• Theissinger Kathrin, LOEWE Centre for Translational Biodiversity Genomics (DEU)
• Fernandes Carlos, Universidade de Lisboa (PRT)
• Formenti Giulio, Rockefeller University (USA)
• Bista Iliana, Naturalis Biodiversity Center (NLD)
• Berg Paul R., University of Oslo (NOR)
• Bleidorn Christoph, University of Göttingen (DEU)
• Bombarely Aureliano, Università degli studi di Milano (ITA)
• Crottini Angelica, CIBIO (PRT)
• Gallo Guido R., University of Milan (ITA)
• Godoy José A., CSIC (ESP)
• Jentoft Sissel, University of Oslo (NOR)
• Malukiewicz Joanna, German Primate Center (DEU)
• Mouton Alice, Université de Liège (BEL)
• Oomen Rebekah A., University of Oslo (NOR)
• Paez Sadye, Rockefeller University (USA)
• Palsbøll Per J., University of Groningen (NLD)
• Pampoulie Christophe, Marine and Freshwater Research Institute (ISL)
• Ruiz-López María J., CSIC (ESP)
• Secomandi Simona, University of Milan (ITA)
• Svardal Hannes, Université d'Anvers (BEL)
• Theofanopoulou Constantina, Rockefeller University (USA)
• de Vries Jan, University of Goettingen (DEU)
• Waldvogel Ann-Marie, University of Cologne (DEU)
• Zhang Guojie, UCPH (DNK)
• Jarvis Erich D., Rockefeller University (USA)
• Bálint Miklós, LOEWE Centre for Translational Biodiversity Genomics (DEU)
• Ciofi Claudio, University of Florence (ITA)
• Waterhouse Robert M., UNIL (CHE)
• Mazzoni Camila J., Leibniz Institute DSMZ (DEU)
• Höglund Jacob, Uppsala University (SWE)
• Aghayan Sargis A., Yerevan State University (ARM)
• Alioto Tyler S., Centre for Genomic Regulation (ESP)
• Almudi Isabel, UB (ESP)
• Alvarez Nadir, UNIL (CHE)
• Alves Paulo, CIBIO (PRT)
• Amorim do Rosario Isabel R., University of the Azores (PRT)
• Antunes Agostino, University of Porto (PRT)
• Arribas Paula, CSIC (ESP)
• Baldrian Petr, ASCR (CZE)
• Bertorelle Giorgio, University of Ferrara (ITA)
• Böhne Astrid, ENS Lyon (FRA)
• Bonisoli-Alquati Andrea, California State Polytechnic University (USA)
• Boštjančić Ljudevit L., LOEWE Centre for Translational Biodiversity Genomics (DEU)
• Boussau Bastien, Université de Lyon (FRA)
• Breton Catherine, CIRAD-BIOS-UMR AGAP (FRA)
• et al.

Source : Cirad-Agritrop (https://agritrop.cirad.fr/614181/)

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