Résultats pour : "bioinformatique"

Adaptive evolution in virulence effectors of the rice blast fungus Pyricularia oryzae. Le Naour-Vernet Marie, Charriat FLorian, Gracy Jérôme, Cros-Arteil Sandrine, Ravel Sébastien, Veillet Florian, Meusnier Isabelle, Padilla André, Kroj Thomas, Cesari Stella, Gladieux Pierre. 2023. PLoS Pathogens, 19 (9):e1011294, 29 p.

Chimeras in Merlot grapevine revealed by phased assembly. Sichel V., Sarah Gautier, Girollet N., Laucou V., Roux C., Roques M., Mournet Pierre, Le Cunff Loïc, Bert P.F., This Patrice, Lacombe Thierry. 2023. BMC Genomics, 24:396, 22 p.

Genome-wide admixture mapping identifies wild ancestry-of-origin segments in cultivated Robusta coffee. Vi Tram, Vigouroux Yves, Cubry Philippe, Marraccini Pierre, Phan Viet Ha, Khong Ngan Giang, Poncet Valérie. 2023. Genome Biology and Evolution, 15 (5):evad065, 12 p.

Interpreting phylogenetic placements for taxonomic assignment of environmental DNA. Ewers Isabelle, Rajter Lubomir, Czech Lucas, Mahe Frédéric, Stamatakis Alexandros, Dunthorn Micah. 2023. Journal of Eukaryotic Microbiology, 70 (5):12990, 10 p.

Visualizing and inferring chromosome segregation in the pedigree of an improved banana cultivar (gold finger) with genome ancestry mosaic painting. Cenci Alberto, Martin Guillaume, Breton Catherine, D'Hont Angélique, Yahiaoui Nabila, Sardos Julie, Rouard Mathieu. 2023. Horticulturae, 9 (12), n.spéc. Developments in the Genetics and Breeding of Banana Species:1330, 11 p.

A tell tail sign: A conserved C-terminal tail-anchor domain targets a subset of pathogen effectors to the plant endoplasmic reticulum. Breeze Emily, Vale Victoria, McLellan Hazel, Pecrix Yann, Godiard Laurence, Grant Murray, Frigerio Lorenzo. 2023. Journal of Experimental Botany, 74 (10) : 3188-3202.

GeMo: A web-based platform for the visualization and curation of genome ancestry mosaics. Summo Marilyne, Comte Aurore, Martin Guillaume, Perelle Pierrick, Weitz Eric M., Droc Gaëtan, Rouard Mathieu. 2022. Database, 2022:baac057 : 1-5.

Genomicus in 2022: Comparative tools for thousands of genomes and reconstructed ancestors. Nguyen Nga Thi Thuy, Vincens Pierre, Dufayard Jean François, Roest Crollius Hugues, Louis Alexandra. 2022. Nucleic Acids Research, 50 (1) : 1025-1031.

Incipient speciation between host-plant strains in the fall armyworm. Durand Karine, Yainna Kumarihami Sudeeptha, Nam Kiwoong. 2022. BMC Ecology and Evolution, 22 (1), 8 p.

Nonribosomal peptide synthesis definitely working out of the rules. Duban Matthieu, Cociancich Stéphane, Leclère Valérie. 2022. Microorganisms, 10 (3), n.spéc. Microbial Non-Ribosomal Synthesis of Secondary Metabolites:577, 19 p.

Somatic mutation detection: A critical evaluation through simulations and reanalyses in oaks. Schmitt Sylvain, Leroy Thibault, Heuertz Myriam, Tysklind Niklas. 2022. Peer Community Journal, 2:e68, 14 p.

Fijiyama: A registration tool for 3D multimodal time-lapse imaging. Fernandez Romain, Moisy Cédric. 2021. Bioinformatics, 37 (10) : 1482-1484.

RapGreen, an interactive software and web package to explore and analyze phylogenetic trees. Dufayard Jean François, Bocs Stéphanie, Guignon Valentin, Larivière Delphine, Louis Alexandra, Oubda Nicolas, Rouard Mathieu, Ruiz Manuel, De Lamotte Frédéric. 2021. NAR Genomics and Bioinformatics, 3 (3):lqab088, 6 p.

EpidVis: A visual web querying tool for animal epidemiology surveillance. Fadloun Samilha, Sallaberry Arnaud, Mercier Alizé, Arsevska Elena, Roche Mathieu, Poncelet Pascal. 2020. Information Visualization, 19 (1) : 48-64.

RRGPredictor, a set-theory-based tool for predicting pathogen-associated molecular pattern receptors (PRRs) and resistance (R) proteins from plants. Santana Silva Raner José, Micheli Fabienne. 2020. Genomics, 112 (3) : 2666-2676.

Resistance and susceptibility to Xanthomonas phaseoli pv. manihotis in cassava: A transcriptomic comparison (or two sides of the same coin). Ramirez Edilene, Dereeper Alexis, Bernal Adriana Jimena, Szurek Boris, López Camilo. 2020. Physiological and Molecular Plant Pathology, 112:101535, 11 p.

Segmentación de instancias para detección automática de malezas y cultivos en campos de cultivo. Mora-Fallas Adán, Goeau Hervé, Joly Alexis, Bonnet Pierre, Mata-Montero Erick. 2020. Tecnología en Marcha, 33, n.spéc. Contribuciones a la Conferencia 6th Latin America High Performance Computing Conference (CARLA) : 13-17. Latin America High Performance Computing Conference. 6, Turrialba, Costa Rica, 25 Septembre 2019/27 Septembre 2019.

A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm. Scalabrin Simone, Toniutti Lucile, Di Gaspero Gabriele, Scaglione Davide, Magris Gabriele, Vidotto Michele, Pinosio Sara, Cattonaro Frederica, Magni Federica, Jurman Irena, Cerutti Mario, Suggi Liverani Furio, Navarini Luciano, Del Terra Lorenzo, Pellegrino Gloria, Ruosi Manuela Rosanna, Vitulo Nicola, Valle Giorgio, Pallavicini Alberto, Graziosi Giorgio, Klein Patricia E., Bentley Nolan, Murray Seth C., Solano William, Al Hakimi Amin, Schilling Timothy, Montagnon Christophe, Morgante Michele, Bertrand Benoît. 2020. Scientific Reports, 10:4642, 13 p.

A whole-genome worldwide molecular epidemiology approach for contagious caprine pleuropneumonia. Loire Etienne, Issa Ibrahim Abdoulkarim, Manso-Silvan Lucia, Lignereux Louis, Thiaucourt François. 2020. Heliyon, 6:e05146, 7 p.

BrAPI—an application programming interface for plant breeding applications. Selby Peter, Abbeloos Rafael, Backlund Jan Erik, Basterrechea Salido Martin, Bauchet Guillaume, Benites-Alfaro Omar E., Birkett Clay, Calaminos Viana C., Carceller Pierre, Cornut Guillaume, Vasques Costa Bruno, Edwards Jeremy D., Finkers Richard, Yanxin Gao Star, Ghaffar Mehmood, Glaser Philip, Guignon Valentin, Hok Puthick, Kilian Andrzej, König Patrick, Lagare Jack Elendil B., Lange Matthias, Laporte Marie-Angélique, Larmande Pierre, LeBauer David S., Lyon David A., Marshall David S., Matthews Dave, Milne Iain, Mistry Naymesh, Morales Nicolas, Mueller Lukas, Neveu Pascal, Papoutsoglou Evangelia, Pearce Brian, Perez-Masias Ivan, Pommier Cyril, Ramírez-González Ricardo H., Rathore Abhishek, Raquel Angel Manica, Raubach Sebastian, Rife Trevor, Robbins Kelly, Rouard Mathieu, Sarma Chaitanya, Scholz Uwe, Sempere Guilhem, et al.. 2019. Bioinformatics, 35 (20) : 4147-4155.

GECKO is a genetic algorithm to classify and explore high throughput sequencing data. Thomas Aubin, Barriere sylvain, Broseus Lucile, Brooke Julie, Lorenzi Claudio, Villemin Jean-Philippe, Beurier Grégory, Sabatier Robert, Reynes Christelle, Mancheron Alban, Ritchie William. 2019. Communications Biology, 2:222, 8 p.

HVA22 from citrus: A small gene family whose some members are involved in plant response to abiotic stress. Gomes Ferreira Monique Drielle, Araújo Castro Jacqueline, Santana Silva Raner José, Micheli Fabienne. 2019. Plant Physiology and Biochemistry, 142 : 395-404.

Modeling the distances traveled by flying insects based on the combination of flight mill and mark-release-recapture experiments. Robinet Christelle, David Guillaume, Jactel Hervé. 2019. Ecological Modelling, 402 : 85-92.

Variations structurales chez le bananier : Caractérisation et impact sur les ségrégations chromosomiques de deux translocations réciproques originaires du groupe M. acuminata burmannica. Dupouy Marion. 2019. Montpellier : Montpellier SupAgro, 148 p. Thèse de doctorat : Génétique et amélioration des plantes : Montpellier SupAgro

Multimedia tools and applications for environmental and biodiversity informatics. Joly Alexis (ed.), Vrochidis Stefanos (ed.), Karatzas Kostas (ed.), Karppinen Ari (ed.), Bonnet Pierre (ed.). 2018. Cham : Springer, 221 p. (Multimedia Systems and Applications) ISBN 978-3-319-76444-3

Stochastic modelling of tree architecture and biomass allocation: Application to teak (Tectona grandis L. f.), a tree species with polycyclic growth and leaf neoformation. Tondjo Kodjo, Brancheriau Loïc, Sabatier Sylvie-Annabel, Kokutse Adzo Dzifa, Kokou Kouami, Jaeger Marc, De Reffye Philippe, Fourcaud Thierry. 2018. Annals of Botany, 121 (7) : 1397-1410.

A highly specific tool for identification of Xanthomonas vasicola pv. musacearum based on five Xvm-specific coding sequences. Nakato Gloria Valentine, Wicker Emmanuel, Coutinho Teresa A., Mahuku George, Studholme David J.. 2018. Heliyon, 4 (12):e01080, 11 p.

Alternative oxidase (AOX) constitutes a small family of proteins in Citrus clementina and Citrus sinensis L. Osb. Araújo Castro Jacqueline, Drielle Gomes Ferreira Monique, Santana Silva Raner José, Andrade Bruno Silva, Micheli Fabienne. 2017. PloS One, 12 (5):e0176878, 17 p.

Comparative analysis of core collection sampling methods for mandarin germplasm based on molecular and phenotypic data. Garcia-Lor Andrés, Luro François, Ollitrault Patrick, Navarro Luis. 2017. Annals of Applied Biology, 171 (3) : 327-339.

Comparative genomics of the zoonotic pathogen Ehrlichia chaffeensis reveals candidate type IV effectors and putative host cell targets. Noroy Christophe, Meyer Damien. 2017. Frontiers in Cellular and Infection Microbiology, 6 (204), 15 p.

Domestication rewired gene expression and nucleotide diversity patterns in tomato. Sauvage Christopher, Rau Andrea, Aichholz Charlotte, Chadoeuf Joël, Sarah Gautier, Ruiz Manuel, Santoni Sylvain, Causse Mathilde, David Jacques, Glemin Sylvain. 2017. Plant Journal, 91 (4) : 631-645.

Genomic preselection with genotyping-bysequencing increases performance of commercial oil palm hybrid crosses. Cros David, Bocs Stéphanie, Riou Virginie, Ortega Abboud Enrique, Tisne Sébastien, Argout Xavier, Pomies Virginie, Nodichao Leifi, Lubis Zulkifli, Cochard Benoît, Durand-Gasselin Tristan. 2017. BMC Genomics, 18:839, 17 p.

SSDM : An R package to predict distribution of species richness and composition based on stacked species distribution models. Schmitt Sylvain, Pouteau Robin, Justeau-Allaire Dimitri, De Boissieu Florian, Birnbaum Philippe. 2017. Methods in Ecology and Evolution, 8 (12) : 1795-1803.

Tree branch level of detail models for forest navigation. Zhang Xiao-Peng, Bao Guanbo, Meng Weiliang, Jaeger Marc, Li Hongjun, Deussen Oliver, Chen Baoquan. 2017. Computer Graphics Forum, 36 (8) : 402-417.

The potential of near infrared spectroscopy (NIRS) to measure the chemical composition of aquaculture solid waste. Lopes Galasso Helena, Callier Myriam, Bastianelli Denis, Blancheton Jean-Paul, Aliaume Catherine. 2017. Aquaculture, 476 : 134-140.

Evaluation of hierarchical models for integrative genomic analyses. Denis Marie, Tadesse Mahlet. 2016. Bioinformatics, 32 (5) : 738-746.

Genome-wide investigation of hsf genes in sesame reveals their segmental duplication expansion and their active role in drought stress response. Dossa Komivi, Diouf Diaga, Cissé Ndiaga. 2016. Frontiers in Plant Science, 7:1522, 16 p.

Gigwa—Genotype investigator for genome-wide analyses. Sempere Guilhem, Philippe Florian, Dereeper Alexis, Ruiz Manuel, Sarah Gautier, Larmande Pierre. 2016. GigaScience, 5 (25), 9 p.

Improvement of the banana Musa acuminata reference sequence using NGS data and semi-automated bioinformatics methods. Martin Guillaume, Baurens Franc-Christophe, Droc Gaëtan, Rouard Mathieu, Cenci Alberto, Kilian Andrzej, Hastie Alex, Dolezelova M., Aury Jean-Marc, Alberti Adriana, Carreel Françoise, D'Hont Angélique. 2016. BMC Genomics, 17 (243), 12 p.

Interactions “Candidatus liberibacter solanacearum”— Bactericera cockerelli: Haplotype effect on vector fitness and gene expression analyses. Yao Jianxiu, Saenkham Panatda, Levy Julien, Ibanez Freddy, Noroy Christophe, Mendoza Azucena, Huot Ordom, Meyer Damien, Tamborindeguy Cecilia. 2016. Frontiers in Cellular and Infection Microbiology, 6 (62), 13 p.

Members of BTB Gene Family of Scaffold Proteins Suppress Nitrate Uptake and Nitrogen Use Efficiency. Araus Viviana, Vidal Elena A., Puelma Tomas, Alamos Simón, Mieulet Delphine, Guiderdoni Emmanuel, Gutiérrez Rodrigo A.. 2016. Plant Physiology, 171 (2) : 1523-1532.

The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Guignon Valentin, Hueber Yann, Rouard Mathieu, Bocs Stéphanie, Couvin David, De Lamotte Frédéric, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Gkanogiannis Anestis, Hamelin Chantal, Larivière Delphine, Martin Guillaume, Ortega Enrique, Pitollat Bertrand, Pointet Stéphanie, Ruiz Manuel, Gautier Sarah, Summo Marilyne, This Dominique, Ravel Sébastien, Larmande Pierre, Monat Cécile, Sabot François, Tando Ndomassi, Tranchant-Dubreuil Christine, Sempere Guilhem, Dereeper Alexis. 2016. Current Plant Biology, 7-8 : 6-9.

Trait coordination, mechanical behaviour and growth form plasticity of Amborella trichopoda under variation in canopy openness. Trueba Santiago, Isnard Sandrine, Barthélémy Daniel, Olson Mark E.. 2016. AoB Plants, 8:plw068, 18 p.

Une architecture orientée services pour l'extraction de connaissances dans la base de données liées AgroLD. Tagny Ngompé Gildas, Venkatesan Aravind, El Hassouni Nordine, Ruiz Manuel, Larmande Pierre. 2016. Ingénierie des Systèmes d'Information, 21 (5-6), Le web de données : publication, liage et capitalisation : 133-157.

BAAD: A biomass and allometry database for woody plants. Falster Daniel S., Duursma Remko A., Ishihara Masae I., Barneche Diego R., FitzJohn Richard G., Vårhammar Angelica, Aiba Masahiro, Ando Makoto, Aspinwall Michael J., Baltzer Jennifer L., Baraloto Christopher, Battaglia Michael, Battles John J., Bond-Lamberty Ben, Van Breugel Michiel, Camac James, Claveau Yves, Coll Lluís, Dannoura Masako, Delagrange Sylvain, Domec Jean-Christophe, Fatemi Farrah, Feng Wang, Gargaglione Veronica, Goto Yoshiaki, Hagihara Akio, Hall Jefferson, Hamilton Steve, Harja Degi, Hiura Tsutom, Holdaway Robert, Hutley Lindsay, Ichie Tomoaki, Jokela Eric J, Kantola Anu, Kelly Jeff W.G., Kenzo Tanaka, King David, Kloeppel Brian D., Kohyama Takashi, Komiyama Akira, Laclau Jean-Paul, Lusk Christopher H., Maguire Douglas A., Le Maire Guerric, Mäkelä Annikki, Markesteijn Lars, Marshall John, McCulloh Katherine, Miyata Itsuo, Mokany Karel, Mori Shigeta, Myster Randall W., Nagano Masahiro, Naidu Shawna, Nouvellon Yann, O'Grady Anthony P., O'Hara Kevin, Ohtsuka Toshiyuki, Osada Noriyuki, Osunkoya Olusegun O., Peri Pablo Luis, Petritan Any Mary, Poorter Lourens, Portsmuth Angelika, Potvin Catherine, Ransijn Johannes, Reid Douglas, Ribeiro Sabina C., Roberts Scott D., Rodríguez Rolando, Saldaña-Acosta Angela, Santa-Regina Ignacio, Sasa Kaichiro, Selaya Galia, Sillett Stephen C., Sterck Frank J., Takagi Kentaro, Tange Takeshi, Tanouchi Hiroyuki, Tissue David T., Umehara Toru, Utsugi Hajime, Vadeboncoeur Matthew A., Valladares Fernando, Vanninen Petteri, Wang Jian, Wenk Elizabeth, Williams Richard, de Aquino Ximenes Fabiano, Yamaba Atsushi, Yamada Toshihiro, Yamakura Takuo, Yanai Ruth D., York Robert A.. 2015. Ecology, 96 (5) : p. 1445.

Barcoding, biobanking, e-banking: from ecological to ethical and legal aspects. Insights from the PathoDivSEA project. Lajaunie Claire, Morand Serge. 2015. In : Socio-ecological dimensions of infectious diseases in Southeast Asia. Morand Serge (ed.), Dujardin Jean-Pierre (ed.), Lefait-Robin Régine (ed.), Apiwathnasorn Chamnarn (ed.). Singapour : Springer, 217-228. ISBN 978-981-287-526-6

Characterizing the respective importance of ontogeny and environmental constraints in forest tree development using growth phase duration distributions. Taugourdeau Olivier, Caraglio Yves, Sabatier Sylvie-Annabel, Guédon Yann. 2015. Ecological Modelling, 300 : 61-72.

Comparative genomic analysis of Ralstonia solanacearum reveals candidate genes for host specificity. Ailloud Florent, Lowe Tiffany, Cellier Gilles, Roche David, Allen Caitilyn, Prior Philippe. 2015. BMC Genomics, 16 (270), 11 p.

Draft genome sequences of two Xanthomonas vesicatoria strains from the Balkan peninsula. Vancheva Taca, Bogatzevska Nevena, Moncheva Penka, Lefeuvre Pierre, Koebnik Ralf. 2015. Genome Announcements, 3 (1):e01558-14, 2 p.

Entropart: An R package to measure and partition diversity. Marcon Eric, Hérault Bruno. 2015. Journal of Statistical Software, 67 (8), 26 p.

EucaMaps: linking genetic maps and associated QTLs to the Eucalyptus grandis genome. Gion Jean-Marc, Chaumeil Philippe, Plomion Christophe. 2015. Tree Genetics and Genomes, 11 (795), 7 p.

An Ixodes scapularis cell line with a predominantly neuron-like phenotype. Oliver Jonathan, Oliva Chavez Adela Sarahi, Felsheim Roderick, Kurtti Timothy, Munderloh Ulrike. 2015. Experimental and Applied Acarology, 66 (3) : 427-442.

Le pouvoir pathogène chez Ralstonia solanacearum phylotype II : génomique intégrative et paysages transcriptomiques en relation avec l'adaptation à l'hôte. Ailloud Florent. 2015. Saint-Denis : Université de la Réunion, 222 p. Thèse de doctorat : Microbiologie. Phytopathologie : Université de la Réunion

New multilocus variable-number tandem-repeat analysis tool for surveillance and local epidemiology of bacterial leaf blight and bacterial leaf streak of rice caused by Xanthomonas oryzae. Poulin Lucie, Grygiel Pierre, Magne Maxime, Gagnevin Lionel, Rodríguez-R Luis Miguel, Forero Serna Natalia, Zhao Shuai, El Rafil M., Dao S., Tekete C., Wonni Issa, Kolta O., Pruvost Olivier, Verdier Valérie, Vernière Christian, Koebnik Ralf. 2015. Applied and Environmental Microbiology, 81 (2) : 688-698.

Phiv-Rootcell: A supervised image analysis tool for rice root anatomical parameter quantification. Lartaud Marc, Perin Christophe, Courtois Brigitte, Thomas Emilie, Henry Sophia, Bettembourg Mathilde, Divol Malgoire Fanchon, Lanau Nadège, Artus Florence, Bureau Charlotte, Verdeil Jean-Luc, Sarah Gautier, Guiderdoni Emmanuel, Diévart Anne. 2015. Frontiers in Plant Science, 5 (790), 7 p.

Plant canopy modeling from Terrestrial LiDAR System (TLS) distance and intensity data. Balduzzi Mathide. 2015. Montpellier : Université de Montpellier 2, 231 p. Thèse de doctorat : Informatique : Université Montpellier 2

Plant virus metagenomics: Advances in virus discovery. Roossinck Marilyn J., Martin Darren Patrick, Roumagnac Philippe. 2015. Phytopathology, 105 (6) : 716-727.

QueTAL: A suite of tools to classify and compare TAL effectors functionally and phylogenetically. Pérez-Quintero Alvaro L., Lamy Léo, Gordon Jonathan, Escalon Aline, Cunnac Sébastien, Szurek Boris, Gagnevin Lionel. 2015. Frontiers in Plant Science, 6 (545), 16 p.

Reducing the error in biomass estimates strongly depends on model selection. Picard Nicolas, Boyemba Bosela Faustin, Rossi Vivien. 2015. Annals of Forest Science, 72 (6) : 811-823.

SNiPlay3: A web-based application for exploration and large scale analyses of genomic variations. Dereeper Alexis, Homa Félix, Andres Gwendoline, Sempere Guilhem, Sarah Gautier, Hueber Yann, Dufayard Jean François, Ruiz Manuel. 2015. Nucleic Acids Research, 43 (W1) : W295-W300.

Should tree biomass allometry be restricted to power models? Picard Nicolas, Rutishauser Ervan, Ploton Pierre, Ngomanda Alfred, Henry Matieu. 2015. Forest Ecology and Management, 353 : 156-163.

TOGGLE: toolbox for generic NGS analyses. Monat Cécile, Tranchant-Dubreuil Christine, Kougbeadjo Ayite, Farcy Cédric, Ortega-Abboud Enrique, Amanzougarene Souhila, Ravel Sébastien, Agbessi Mawussé, Orjuela-Bouniol Julie, Summo Marilyne, Sabot François. 2015. BMC Bioinformatics, 16 (374) : 1-8.

WIDDE: a Web-Interfaced next generation database for genetic diversity exploration, with a first application in cattle. Sempere Guilhem, Moazami-Goudarzi Katayoun, Eggen André, Laloë Denis, Gautier Mathieu, Flori Laurence. 2015. BMC Genomics, 16 (940), 8 p.

The coffee genome hub: a resource for coffee genomes. Dereeper Alexis, Bocs Stéphanie, Rouard Mathieu, Guignon Valentin, Ravel Sébastien, Tranchant-Dubreuil Christine, Poncet Valérie, Garsmeur Olivier, Lashermes Philippe, Droc Gaëtan. 2015. Nucleic Acids Research, 43 (D1), D1028-D1035

AMAPstudio: An editing and simulation software suite for plants architecture modelling. Griffon Sébastien, De Coligny François. 2014. Ecological Modelling, 290 : 3-10. International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA12). 4, Shanghai, Chine, 31 Octobre 2012/3 Novembre 2012.

BIOMATH 2013 [Editorial]. Anguelov Roumen, Dumont Yves. 2014. Computers and Mathematics with Applications, 68 (9) : 903-904.

Caractérisation automatique d'organisations cellulaires dans des mosaïques d'images microscopiques de bois. Brunel Guilhem. 2014. Montpellier : Université de Montpellier 2, 153 p. Thèse de doctorat : Bio-informatique : Université Montpellier 2

Caractérisation des différences de structures chromosomiques dans l'espèce Musa acuminata par re-séquençage ; le cas de l'accession Pahang. Martin Guillaume. 2014. Montpellier : Montpellier SupAgro, 299 p. Thèse de doctorat : Systèmes intégrés en biologie, agronomie, géosciences, hydrosciences, environnement (SIBAGHE). Biologie intégrative des plantes : Montpellier SupAgro Centre international d'études supérieures en sciences agronomiques

Development and characterization of a new set of 164 polymorphic EST-SSR markers for diversity and breeding studies in rubber tree (Hevea brasiliensis Müll. Arg.). Cubry Philippe, Pujade-Renaud Valérie, Garcia Dominique, Espeout Sandra, Le Guen Vincent, Granet Françoise, Seguin Marc. 2014. Plant Breeding, 133 (3) : 419-426.

Estimation of genealogical coancestry in plant species using a pedigree reconstruction algorithm and application to an oil palm breeding population. Cros David, Sanchez Leopoldo, Cochard Benoît, Samper Patrick, Denis Marie, Bouvet Jean-Marc, Fernandez Jesus. 2014. Theoretical and Applied Genetics, 127 (4) : 981-994.

La compensation dans les interactions plantes-insectes : modélisation, simulation et expérimentation. Lebon Audrey. 2014. Montpellier : Université de Montpellier 2, 227 p. Thèse de doctorat : Ecologie, évolution, ressources génétiques, paléontologie : Université Montpellier 2

Phylogenetic reconstruction methods: An overview. De Bruyn Alexandre, Martin Darren Patrick, Lefeuvre Pierre. 2014. In : Molecular Plant Taxonomy. by Pascale Besse (ed.). New York : Humana Press, 257-277. (Mehtods in Molecular Biology, 1115) ISBN 978-1-62703-766-2

Statistical ecology comes of age. Gimenez Olivier, Buckland Stephen T., Morgan Byron J., Bez Nicolas, Bertrand Sophie, Choquet Rémi, Dray Stéphane, Etienne Marie-Pierre, Fewster Rachel, Gosselin Frédéric, Mérigot Bastien, Monestiez Pascal, Morales Juan M., Mortier Frédéric, Munoz François, Ovaskainen Otso, Pavoine Sandrine, Pradel Roger, Schurr Frankl M., Thomas Len, Thuiller Wilfried, Trenkel Verena, De Valpine Perry, Rexstad Eric. 2014. Biology Letters, 11 (1), 4 p.

A statistical modeling framework for analyzing tree-indexed data: Application to plant development on microscopic and macroscopic scales. Fernique Pierre. 2014. Montpellier : UM2, 148 p. Thèse de doctorat : Mathématiques appliquées. Biostatistique : Université Montpellier 2

Appropriate formulation of the objective function for the history matching of seismic attributes. Tillier Elodie, Da Veiga S., Derfoul R.. 2013. Computers and Geosciences, 51 : 64-73.

Dynamic of H5N1 virus in Cambodia and emergence of a novel endemic sub-clade. Sorn San, Sok Touch, Ly Sovann, Rith Sareth, Nguyen Tung, Viari Alain, Gavotte Laurent, Holl Davun, Seng Heng, Asgari Nima, Richner Beat, Laurent Denis, Chea Nora, Duong Veasna, Toyoda Tetsuya, Yasudai Chadwick Y., Kitsutani Paul, Zhoui Paul, Bing Sun, Deubel Vincent, Donis Ruben, Frutos Roger, Buchy Philippe. 2013. Infection, Genetics and Evolution, 15, spec. : 87-94. International Giardia and Cryptosporidium Conference. 4, Wellington, Afrique du Sud, 30 Janvier 2012/3 Février 2012.

Forecasting deforestation and carbon emissions in tropical developing countries facing demographic expansion: A case study in Madagascar. Vieilledent Ghislain, Grinand Clovis, Vaudry Romuald. 2013. Ecology and Evolution, 3 (6) : 1702-1716.

La boîte à outils Mexico, un environnement générique pour piloter l'exploration numérique de modèles. Richard Hervé, Monod Hervé, Wang Juhui, Couteau Jean, Dumoulin Nicolas, Poussin Benjamin, Soulie Jean-Christophe, Ramat Eric. 2013. In : Analyse de sensibilité et exploration de modèles : application aux sciences de la nature et de l'environnement. Faivre Robert (ed.), Iooss Bertrand (ed.), Mahévas Stéphanie (ed.), Makowski David (ed.), Monod Hervé (ed.). Versailles : Ed. Quae, 233-253. (Savoir-faire) ISBN 978-2-7592-1906-3

TropGeneDB, the multi-tropical crop information system updated and extended. Hamelin Chantal, Sempere Guilhem, Jouffe Vincent, Ruiz Manuel. 2013. Nucleic Acids Research, 41 (D1), D1172-D1175

Dossier de candidature au diplôme d'habilitation à diriger des recherches. Perin Christophe. 2012. Montpellier : UM2, 61 p. Habilitation à diriger des recherches : Université Montpellier 2

Evaluation of the allergenicity potential of TcPR-10 protein from Theobroma cacao. Menezes Sara Pereira, Dos Santos Jane Lima, Cardoso Thyago Hermylly Santana, Pirovani Carlos Priminho, Micheli Fabienne, Noronha Fátima Soares Noronha, Alves Andréa Catão, Faria Ana Maria Caetano, Da Silva Gesteira Abelmon. 2012. PloS One, 7 (6):e37969, 12 p.

Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets. Gebelin Virginie, Argout Xavier, Engchuan Worrawat, Pitollat Bertrand, Duan Cuifang, Montoro Pascal, Leclercq Julie. 2012. BMC Plant Biology, 12 (12), 18 p.

Intégration des données et des connaissances appliquée à la génomique des plantes tropicales et méditerranéennes. Ruiz Manuel. 2012. Montpellier : UM2, 35 p. Habilitation à diriger des recherches : Systèmes intègres en biologie, agronomie, géosciences, hydrosciences, environnement (SIBAGHE) : Université Montpellier 2

OsWRKY22, a monocot WRKY gene, plays a role in the resistance response to blast. Abbruscato Pamela, Nepusz Tamas, Mizzi Luca, Del Corvo Marcello, Morandini Piero, Fumasoni Irene, Michel Corinne, Paccanaro Alberto, Guiderdoni Emmanuel, Schaffrath Ulrich, Morel Jean-Benoit, Piffanelli Pietro, Faivre-Rampant Odile. 2012. Molecular Plant Pathology, 13 (8) : 828-841.

Plant growth modeling, simulation, visualization and applications. Proceedings PMA12 : The Fourth International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Shanghai, China, 31 October-3 November 2012. Kang Meng Zhen (ed.), Dumont Yves (ed.), Guo Yan (ed.). 2012. Piscataway : IEEE, 472 p. ISBN 978-1-4673-0068-1 International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA12). 4, Shanghai, Chine, 31 Octobre 2012/3 Novembre 2012.

Reconstructing plant architecture from 3D laser scanner data. Preuksakarn Chakkrit. 2012. Montpellier : UM2, 134 p. Thesis Ph. D. : Science in Computer Science : Université Montpellier 2

Role of bioinformatics as a tool. Rouard Mathieu, Carpentier Sébastien Christian, Bocs Stéphanie, Droc Gaëtan, Argout Xavier, Roux Nicolas, Ruiz Manuel. 2012. In : Genetics, genomics and breeding of bananas. Pillay Michael (ed.), Ude George (ed.), Kole Chittaranjan (ed.). Enfield : Science Publishers, 194-216. (Genetics, genomics and breeding of crop plants) ISBN 978-1-57808-788-4

The chestnut blight fungus world tour: successive introduction events from diverse origins in an invasive plant fungal pathogen. Dutech Cyril, Barrès Benoit, Bridier Julie, Robin Cécile, Milgroom Michael, Ravigné Virginie. 2012. Molecular Ecology, 21 (16) : 3931-3946.

Génération semi-automatique de services Web sémantiques pour des bases de données relationnelles biologiques. Wollbrett Julien. 2011. Montpellier : UM2, 244 p. Thèse de doctorat : Université Montpellier 2

Modelling population dynamics and response to management options in the poultry red mite Dermanyssus gallinae (Acari: Dermanyssidae). Huber Karine, Zenner Lionel, Bicout D.J.. 2011. Veterinary Parasitology, 176 (1) : 65-73.

SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects. Dereeper Alexis, Nicolas Stéphane, Le Cunff Loïc, Bacilieri Roberto, Doligez Agnès, Péros Jean-Pierre, Ruiz Manuel, This Patrice. 2011. BMC Bioinformatics, 12 (134), 14 p.

The sugarcane genome challenge: Strategies for sequencing a highly complex genome. Mendes Souza Glaucia, Berges Hélène, Bocs Stéphanie, Casu Rosanne, D'Hont Angélique, Ferreira João Eduardo, Henry Robert, Ming Ray, Potier Bernard, Van Sluys Marie-Anne, Vincentz Michel, Paterson Andrew H.. 2011. Tropical Plant Biology, 3 (3-4) : 145-156.

Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0). Cornuet Jean-Marie, Ravigné Virginie, Estoup Arnaud. 2010. BMC Bioinformatics, 11 (401), 11 p.

A global portal enabling worldwide access to information on conservation and use of biodiversity for food and agriculture. Arnaud Elizabeth, Dias Sonia, Mackay Michael, Cyr Pete, Gardner Candice, Bretting Peter, Kinard Gary, Guarino Luigi, Louafi Selim. 2010. In : Information and communication technologies for biodiversity conservation and agriculture. Maurer Lisa (ed.), Tochtermann Klaus (ed.). Aix-la-Chapelle : Shaker Verlag, 168-180. ISBN 978-3-8322-8459-6

IDAO: Un programa grafico para la identificacion de plantas y la formacion. Su applicacion en Laos. Prosperi Maria-Juliana, Grard Pierre. 2009. Boletín de la Sociedad Argentina de Botánica, 44 (3-4)

Single nucleotide polymorphisms from Theobroma cacao expressed sequence tags associated with witches' broom disease in cacao. Lima Leila S., Gramacho Karina Peres, Carels Nicolas, Novais R., Gaiotto Fernanda Amato, Lopes Uilson Vanderlei, Gesteira Abelmon, Zaidan Humberto A., Cascardo Julio Cezar M., Pires José Luis, Micheli Fabienne. 2009. Genetics and Molecular Research, 8 (3) : 799-808.

Analytical study of a stochastic plant growth model : Application to the GreenLab model. Kang Meng Zhen, Cournède Paul-Henry, De Reffye Philippe, Auclair Daniel, Hu Bao-Gang. 2008. Mathematics and Computers in Simulation, 78 (1) : 57-75.

Do outbreaks affect genetic population structure? A worldwide survey in Locusta migratoria, a pest plagued by microsatellite null alleles. Chapuis Marie-Pierre, Lecoq Michel, Michalakis Yannis, Loiseau Anne, Sword A., Piry Sylvain, Estoup Arnaud. 2008. Molecular Ecology, 17 (16) : 3640-3653.

Emergence and potential of high-throughput and integrative approaches in pathology tackling the adaptive evolution of pathogens. Frutos Roger, Viari Alain, Vachiery Nathalie, Boyer Frédéric, Lefrançois Thierry, Martinez Dominique. 2008. Annals of the New York Academy of Sciences, 1149 : 62-65. Biennial Conference of the Society for Tropical Veterinary Medicine. 9, Mexico, Mexique, 17 Juin 2007/22 Juin 2007.

IT&C for understanding and assessing biodiversity. Grard Pierre, Prosperi Maria-Juliana, Bonnet Pierre, Edelin Claude. 2008. Newsletter - European Distributed Institute of Taxonomy (11) : 8-9.

Pathogeno-proteomics: Toward a new approach of host-vector-pathogen interactions. Holzmuller Philippe, Grébaut Pascal, Brizard Jean-Paul, Berthier David, Chantal Isabelle, Bossard Géraldine, Bucheton Bruno, Vezilier Frédéric, Chuchana Paul, Bras-Gonçalves Rachel, Lemesre Jean-Loup, Vicendeau Philippe, Cuny Gérard, Frutos Roger, Biron David George. 2008. Annals of the New York Academy of Sciences, 1149 : 66-70. Biennial Conference of the Society for Tropical Veterinary Medicine. 9, Mexico, Mexique, 17 Juin 2007/22 Juin 2007.