Résultats pour : "génome"

2024 taxonomy update for the family Circoviridae. Varsani Arvind, Harrach Balázs, Roumagnac Philippe, Benkő Mária, Breitbart Mya, Delwart Eric, Franzo Giovanni, Kazlauskas Darius, Rosario Karyna, Segalés Joaquim, Dunay Emily, Rukundo Joshua, Goldberg Tony L., Fehér Enikő, Kaszab Eszter, Bányai Krisztián, Krupovic Mart. 2024. Archives of Virology, 169:176, 23 p.

Alternative double strand break repair pathways shape the evolution of high recombination in the honey bee, Apis mellifera. Fouks Bertrand, Miller Kathleen J., Ross Caitlin, Jones Corbin, Rueppell Olav. 2024. Insect Molecular Biology, 18 p.

Celebrating the 20th anniversary of the first Xanthomonas genome sequences - how genomics revolutionized taxonomy, provided insight into the emergence of pathogenic bacteria, enabled new fundamental discoveries and helped developing novel control measures - a perspective from the French network on Xanthomonads. Koebnik Ralf, Cesbron Sophie, Chen Nicolas W.G., Fischer-Le Saux Marion, Hutin Mathilde, Jacques Marie Agnès, Noel Laurent D., Pérez-Quintero Alvaro L., Portier Perrine, Pruvost Olivier, Rieux Adrien, Szurek Boris. 2024. Peer Community Journal, 4:e19, 22 p.

Characterization of six ampeloviruses infecting pineapple in Reunion Island using a combination of high-throughput sequencing approaches. Massé Delphine, Candresse Thierry, Filloux Denis, Massart Michel, Cassam Nathalie, Hostachy Bruno, Marais Armelle, Fernandez Emmanuel, Roumagnac Philippe, Verdin Eric, Teycheney Pierre-Yves, Lett Jean-Michel, Lefeuvre Pierre. 2024. Viruses, 16 (7):1146, 17 p.

Comparative transcriptomics reveals a highly polymorphic Xanthomonas HrpG virulence regulon. Monnens Thomas Quiroz, Roux Brice, Cunnac Sébastien, Charbit Erika, Carrère Sébastien, Lauber Emmanuelle, Jardinaud Marie-Françoise, Darrasse Armelle, Arlat Mathieu, Szurek Boris, Pruvost Olivier, Jacques Marie Agnès, Gagnevin Lionel, Koebnik Ralf, Noel Laurent D., Boulanger Alice. 2024. BMC Genomics, 25:777, 17 p.

Complete genome sequence of a copper-resistant Xanthomonas campestris pv. campestris strain isolated from broccoli in Mauritius suggests adaptive gene gain through horizontal gene transfer. Boyer Claudine, Lefeuvre Pierre, Richard Damien, Lobin Kanta Kumar, Pruvost Olivier. 2024. Phytopathology, 114 (2) : 328-333.

Complete sequence and genome characterization of miscanthus virus M, a new betaflexivirus from Miscanthus sp. Abrahamian Peter, Grinstead Samuel, Kinard Gary, Goenaga Ricardo, Rott Philippe, Mollov Dimitre S.. 2024. Archives of Virology, 169:27, 5 p.

Continent-wide genomic analysis of the African buffalo (Syncerus caffer). Talenti Andrea, Wilkinson Toby, Cook Elizabeth A., Hemmink Johanneke D., Paxton Edith A., Mutinda Matthew, Ngulu Stephen D., Jayaraman Siddharth, Bishop Richard P., Obara Isaiah, Hourlier Thibaut, Garcia Giron Carlos, Martin Fergal J., Labuschagne Michel, Atimnedi Patrick, Nanteza Anne, Keyyu Julius, Mramba Furaha, Caron Alexandre, Cornelis Daniel, Chardonnet Philippe, Fyumagwa Robert, Lembo Tiziana, Auty Harriet K., Michaux Johan, Smitz Nathalie, Toye Philip, Robert Christelle, Prendergast James G.D., Morrison Liam. 2024. Communications Biology, 7:792, 14 p.

Cytogenomic characterization of transposable elements and satellite DNA in Passiflora L. Species. Santos Silva Gonçalo, Magalhães Souza Margarete, de Carvalho Cayres Pamponét Vanessa, Micheli Fabienne, Ferreira de Melo Cláusio Antônio, Gomes de Oliveira Sarah, Almeida Costa Eduardo. 2024. Genes, 15 (4):418, 15 p.

DNA transposons favor de novo transcript emergence through enrichment of transcription factor binding motifs. Lebherz Marie Kristin, Fouks Bertrand, Schmidt Julian, Bornberg-Bauer Erich, Grandchamp Anna. 2024. Genome Biology and Evolution, 16 (7), 16 p.

Detecting the genetic variants associated with key culinary traits in Dioscorea alata. Dossa Komivi, Houngbo Mahugnon Ezekiel, Lechaudel Mathieu, Maledon Erick, Bovys Zoclanclounon Yedomon Ange, Irep Jean-Luc, Nazir Mian Faisal, Chair Hanâ, Cornet Denis. 2024. LWT - Food Science and Technology, 202:116301, 12 p.

Different viral genes modulate virulence in model mammal hosts and Culex pipiens vector competence in Mediterranean basin lineage 1 West Nile virus strains. Fiacre Lise, Nougairède Antoine, Migné Camille, Bayet Maëlle, Cochin Maxime, Dumarest Marine, Helle Teheipuaura, Exbrayat Antoni, Pagès Nonito, Vitour Damien, Richardson Jennifer, Failloux Anna-Bella, Vazeille Marie, Albina Emmanuel, Lecollinet Sylvie, Gonzalez Gaëlle. 2024. Frontiers in Microbiology, 14:1324069, 16 p.

Endogenous viral elements are targeted by RNA silencing pathways in banana. Duroy Pierre-Olivier, Seguin Jonathan, Ravel Sébastien, Rajendran Rajeswaran, Laboureau Nathalie, Salmon Frédéric, Delos Jean-Marie Eric, Pooggin Mikhail, Iskra Caruana Marie-Line, Chabannes Matthieu. 2024. New Phytologist, 244 (4) : 1519-1536.

Estimation of contemporary effective population size in plant populations: Limitations of genomic datasets. Gargiulo Roberta, Decroocq Véronique, González-Martínez Santiago C., Paz-Vinas Ivan, Aury Jean-Marc, Lesur Kupin Isabelle, Plomion Christophe, Schmitt Sylvain, Scotti Ivan, Heuertz Myriam. 2024. Evolutionary Applications, 17 (5):e13691, 16 p.

Genome-wide association for agro-morphological traits in a triploid banana population with large chromosome rearrangements. Rio Simon, Toniutti Lucile, Salmon Frédéric, Hervouet Catherine, Cardi Céline, Mournet Pierre, Guiougou Chantal, Marius Franck, Mina Claude, Delos Jean-Marie Eric, Lambert Frédéric, Madec Camille, Efile Jean-Claude, Cruaud Corinne, Aury Jean-Marc, D'Hont Angélique, Hoarau Jean-Yves, Martin Guillaume. 2024. Horticulture Research:uhae307

Genome-wide association studies reveal novel loci controlling tuber flesh color and oxidative browning in Dioscorea alata. Dossa Komivi, Morel Angélique, Houngbo Mahugnon Ezekiel, Zotta Mota Ana, Maledon Erick, Irep Jean-Luc, Diman Jean-Louis, Mournet Pierre, Causse Sandrine, Nguyen Van Kien, Cornet Denis, Chaïr Hâna. 2024. Journal of the Science of Food and Agriculture, 104 (8), n.spéc. Tropical roots, tubers and bananas: New breeding tools and methods to meet consumer preferences : 4895-4906.

Genome-wide association studies reveals new candidate genes associated with resistance to Striga gesneroides in Cowpea [Vigna unguiculata (L.) Walp.] accessions from sub-Saharan Africa. Koura Abdoulaye Ali, Wireko Kena Alexander, Annor Benjamin, Adejumobi Idris I., Sayadi Maazou Abdoul-raouf, Awuku Fredercik Justice, Attamah Patrick, Boukar Ousmane, Richard Akromah. 2024. Ecological Genetics and Genomics, 32:100267, 8 p.

Genomic evidence of genuine wild versus admixed olive populations evolving in the same natural environments in western Mediterranean Basin. Zunino Lison, Cubry Philippe, Sarah Gautier, Mournet Pierre, El Bakkali Ahmed, Aqbouch Laila, Sidibé-Bocs Stéphanie, Costes Evelyne, Khadari Bouchaib. 2024. PloS One, 19 (1):e0295043, 18 p.

Low-frequency somatic mutations are heritable in tropical trees Dicorynia guianensis and Sextonia rubra. Schmitt Sylvain, Heuret Patrick, Troispoux Valérie, Beraud Mélmanie, Cazal Jocelyn, Chancerel Emilie, Cravero Charlotte, Guichoux Erwan, Lepais Olivier, Loureiro João, Marande William, Martin-Ducup Olivier, Vincent Grégoire, Chave Jérôme, Plomion Christophe, Leroy Thibault, Heuertz Myriam, Tysklind Niklas. 2024. Proceedings of the National Academy of Sciences of the United States of America, 121 (10):e2313312121, 7 p.

New insights in the evolutionary history of cacao-infecting badnaviruses. Gonzalez Grande Patricia Lorena, Micheli Fabienne. 2024. Physiological and Molecular Plant Pathology, 130:102242, 20 p.

Painting the diversity of a world's favorite fruit: A next generation catalog of cultivated bananas. Sardos Julie, Cenci Alberto, Martin Guillaume, Breton Catherine, Guignon Valentin, Van Den Houwe Ines, Mendez Yaleidis, Sachter-Smith Gabriel, Chase Rachel, Ruas Max, Rivallan Ronan, Paofa Janet, Wigmore William J., Hunter David Tilafono, D'Hont Angélique, Yahiaoui Nabila, Jenny Christophe, Perrier Xavier, Roux Nicolas, Rouard Mathieu. 2024. Plants, People, Planet, 21 p.

Phylodynamic insights into global emergence and diversification of the tomato pathogen Xanthomonas hortorum pv. gardneri. Jibrin Mustafa O., Sharma Anuj, Mavian Carla N., Timilsina Sujan, Kaur Amandeep, Iruegas-Bocardo Fernanda, Potnis Neha, Minsavage Gerald V., Coutinho Teresa A., Creswell Tom, Egel Daniel S., Francis David M., Kebede Misrak, Miller Sally A., Montelongo María J., Nikolaeva Ekaterina, Pianzzola María J., Pruvost Olivier, Quezado-Duval Alice M., Ruhl Gail E., Shutt Vou M., Maynard Elizabeth, Maeso Diego C., Siri Maria Inés, Trueman Cheryl L., Salemi Marco, Vallad Gary E., Roberts Pamela D., Jones Jeffrey B., Goss Erica M.. 2024. Molecular Plant-Microbe Interactions, 37 (10) : 712-720.

Screening of triploid banana population under natural and controlled black sigatoka disease for genomic selection. Mbo Nkoulou Luther Fort, Fifen Nkouandou Yacouba, Bille Ngalle Hermine, Cros David, Martin Guillaume, Molo Thierry, Ngombo Eya'a Clement, Essome Charles, Zandjanakou-Tachin Martine, Dégbey Hervé, Bell Joseph Martin, Achigan-Dako Enoch G.. 2024. Plant Disease, 108 (7) : 2006-2016.

Target enrichment sequencing coupled with GWAS identifies MdPRX10 as a candidate gene in the control of budbreak in apple. Watson Amy E., Guitton Baptiste, Soriano Alexandre, Rivallan Ronan, Vignes Hélène, Farrera Isabelle, Huettel Bruno, Arnaiz Catalina, da Silveira Falavigna Vítor, Coupel-Ledru Aude, Segura Vincent, Sarah Gautier, Dufayard Jean François, Sidibe-Bocs Stéphanie, Costes Evelyne, Andres Fernando. 2024. Frontiers in Plant Science, 15:1352757, 19 p.

Transcriptome and small RNAome profiling uncovers how a recombinant begomovirus evades RDRγ-mediated silencing of viral genes and outcompetes its parental virus in mixed infection. Jammes Margaux, Golyaev Victor, Fuentes Alejandro, Laboureau Nathalie, Urbino Cica, Plissonneau Clémence, Peterschmitt Michel, Pooggin Mikhail. 2024. PLoS Pathogens, 20 (1):e1011941, 37 p.

Whole-genome sequencing and comparative genomics reveal candidate genes associated with quality traits in Dioscorea alata. Zotta Mota Ana, Dossa Komivi, Lechaudel Mathieu, Cornet Denis, Mournet Pierre, Santoni Sylvain, Lopez David, Chaïr Hâna. 2024. BMC Genomics, 25:248, 17 p.

The complex polyploid genome architecture of sugarcane. Healey Adam, Garsmeur Olivier, Lovell John, Shengquiang S., Sreedasyam Avinash, Jenkins Jerry, Plott C.B., Piperidis George, Pompidor Nicolas, Llaca V., Metcalfe Daniel J., Dolezel Jaroslav, Cápal P., Carlson J.E., Hoarau Jean-Yves, Hervouet Catherine, Zini Cyrille, Diévart Anne, Lipzen Anna, Williams M., Boston L.B., Webber J., Keymanesh K., Tejomurthula S., Rajasekar S., Suchecki R., Furtado Agnelo, May G., Parakkal P., Simmons B.A., Barry K., Henry Robert, Grimwood Jane, Aitken Karen S., Schmutz J., D'Hont Angélique. 2024. Nature, 628 : 804-810.

The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Salojärvi Jarkko, Rambani Aditi, Yu Zhe, Guyot Romain, Strickler Susan R., Lepelley Maud, Wang Cui, Rajaraman Sitaram, Rastas Pasi, Zheng Chunfang, Santos Muñoz Daniella, Meidanis João, Rossi Paschoal Alexandre, Bawin Yves, Krabbenhoft Trevor J., Wang Zhen Qin, Fleck Steven J., Aussel Rudy, Bellanger Laurence, Charpagne Aline, Fournier Coralie, Kassam Mohamed, Lefebvre Gregory, Métairon Sylviane, Descombes Patrick, Rigoreau Michel, Stolte Jens, Hamon Perla, Couturon Emmanuel, Tranchant-Dubreuil Christine, Mukherjee Minakshi, Lan Tianying, Engelhardt Jan, Stadler Peter, De Lemos Samara Mireza Correia, Ivamoto Suzuki Suzana, Sumirat Ucu, Wai Ching Man, Dauchot Nicolas, Orozco-Arias Simon, Garavito Giovanny, Kiwuka Catherine, Musoli Pascal, Nalukenge Anne, Guichoux Erwan, Reinout Havinga, Smit Martin, Carretero-Paulet Lorenzo, Guerreiro Filho Oliveiro, Toma Braghini Masako, Padilha Lilian, Hiroshi Sera Gustavo, Ruttink Tom, Henry Robert, Marraccini Pierre, et al.. 2024. Nature Genetics, 56 : 721-731.

The invasive land flatworm Arthurdendyus triangulatus has repeated sequences in the mitogenome, extra-long cox2 gene and paralogous nuclear rRNA clusters. Gastineau Romain, Lemieux Claude, Turmel Monique, Otis Christian, Boyle Brian, Coulis Mathieu, Gouraud Clément, Boag Brian, Murchie Archie, Winsor Leigh, Justine Jean-Lou. 2024. Scientific Reports, 14:7840, 15 p.

A toolbox for manipulating the genome of the major goat pathogen, Mycoplasma capricolum subsp. capripneumoniae. Gourgues Géraldine, Manso-Silvan Lucia, Chamberland Catherine, Sirand-Pugnet Pascal, Thiaucourt François, Blanchard Alain, Baby Vincent, Lartigue Carole. 2024. Microbiology, 170 (1), 17 p.

Cannabis virome reconstruction and antiviral RNAi characterization through small RNA sequencing. Miotti Niccolo, Sukhikh Natalia, Laboureau Nathalie, Casati Paola, Pooggin Mikhail. 2023. Plants, 12 (23), n.spéc. Different Aspects of Plant Viral Metagenomics:3925, 12 p.

Chimeras in Merlot grapevine revealed by phased assembly. Sichel V., Sarah Gautier, Girollet N., Laucou V., Roux C., Roques M., Mournet Pierre, Le Cunff Loïc, Bert P.F., This Patrice, Lacombe Thierry. 2023. BMC Genomics, 24:396, 22 p.

Combining fusion of cells with CRISPR-Cas9 editing for the cloning of large DNA fragments or complete bacterial genomes in yeast. Guesdon Gabrielle, Gourgues Géraldine, Rideau Fabien, Ipoutcha Thomas, Manso-Silvan Lucia, Jules Matthieu, Sirand-Pugnet Pascal, Blanchard Alain, Lartigue Carole. 2023. ACS Synthetic Biology, 12 (11) : 3252-3266.

Detecting directional and non-directional epistasis in bi-parental populations using genomic data. Rio Simon, Charcosset Alain, Moreau Laurence, Mary-Huard Tristan. 2023. Genetics, 224 (3):iyad089, 10 p.

Draft genome sequences of Neurospora crassa clade B, isolated from burned Cytisus sp. plants in France. Bonometti Lucas, De Bellis Fabien, Cros-Arteil Sandrine, Gladieux Pierre, Stajich Jason E., Gueret Elise. 2023. Microbiology Resource Announcements, 12 (12), 3 p.

Endogenous caulimovirids: Fossils, zombies, and living in plant genomes. Vassilieff Héléna, Geering Andrew D., Choisne Nathalie, Teycheney Pierre-Yves, Maumus Florian. 2023. Biomolecules, 13 (7):1069, 18 p.

Evaluation of NS4A, NS4B, NS5 and 3'UTR Genetic Determinants of WNV Lineage 1 Virulence in Birds and Mammals. Fiacre Lise, Lowenski Steeve, Bahuon Céline, Dumarest Marine, Lambrecht Bénédicte, Dridi Maha, Albina Emmanuel, Richardson Jennifer, Zientara Stéphan, Jiménez-Clavero Miguel Angel, Pardigon Nathalie, Gonzalez Gaëlle, Lecollinet Sylvie. 2023. Viruses, 15 (5), n.spéc. Usutu, West Nile and Tickborne Encephalitis Viruses:1094, 22 p.

First chromosome scale genomes of ithomiine butterflies (Nymphalidae: Ithomiini): Comparative models for mimicry genetic studies. Gauthier Jérémy, Meier Joana, Legeai Fabrice, McClure Melanie, Whibley Annabel, Bretaudeau Anthony, Boulain Hélène, Parrinello Hugues, Mugford Sam T., Durbin Richard, Zhou Chenxi, McCarthy Shane, Wheat Christopher W., Piron-Prunier Florence, Monsempès Christelle, François Marie-Christine, Jay Paul, Noûs Camille, Persyn Emma, Jacquin-Jolyb Emmanuelle, Meslin Camille, Montagné Nicolas, Lemaitre Claire, Elias Marianne. 2023. Molecular Ecology Resources, 23 (4) : 872-885.

Genetic diversity, evolution, and diagnosis of sugarcane yellow leaf virus from 19 sugarcane-producing locations worldwide. Rott Philippe, Grinstead Samuel, Dallot Sylvie, Foster Zachary S. L., Daugrois Jean-Heinrich, Fernandez Emmanuel, Kaye Claudia, Hendrickson Leticia, Hu Xiaojun, Adhikari Bishwo, Malapi Martha, Grunwald Niklaus J., Roumagnac Philippe, Mollov Dimitre S.. 2023. Plant Disease, 10711 : 3437-3447.

Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes. Wang Zheng-Feng, Rouard Mathieu, Droc Gaëtan, Heslop Harrison Pat, Ge Xue-Jun. 2023. GigaScience, 12, 20 p.

Genome scan of rice landrace populations collected across time revealed climate changes' selective footprints in the genes network regulating flowering time. Ahmadi Nourollah, Barry Mamadou Billo, Frouin Julien, de Navascués Miguel, Toure Mamadou Aminata. 2023. Rice, 16:15, 22 p.

Genome-wide admixture mapping identifies wild ancestry-of-origin segments in cultivated Robusta coffee. Vi Tram, Vigouroux Yves, Cubry Philippe, Marraccini Pierre, Phan Viet Ha, Khong Ngan Giang, Poncet Valérie. 2023. Genome Biology and Evolution, 15 (5):evad065, 12 p.

Genome-wide development of intra- and inter-specific transferable SSR markers and construction of a dynamic web resource for yam molecular breeding: Y2MD. Diouf Moussa, Bovys Zoclanclounon Yedomon Ange, Mboup Pape Adama Mboup, Diouf Diaga, Maledon Erick, Rivallan Ronan, Chair Hanâ, Dossa Komivi. 2023. Plant Genome:e20428, 18 p.

Genomes of the cosmopolitan fruit pest Bactrocera dorsalis (Diptera: Tephritidae) reveal its global invasion history and thermal adaptation. Zhang Yue, Liu Shanlin, De Meyer Marc, Liao Zuxing, Zhao Yan, Virgilio Massimiliano, Feng Shiqian, Qin Yujia, Singh Sandeep, Wee Suk Ling, Jiang Fan, Guo Shaokun, Li Hu, Deschepper Pablo, Vanbergen Sam, Delatte Hélène, Van Sauers-Muller Aliès, Syamsudin Tati Suryati, Kawi Anastasia Priscilla, Kasina Muo, Badji Kemo, Said Fazal, Liu Lijun, Zhao Zihua, Li Zhihong. 2023. Journal of Advanced Research, 53 : 61-74.

Genomic analysis of two phlebotomine sand fly vectors of Leishmania from the New and Old World. Labbe Frédéric, Abdeladhim Maha, Abrudan Jenica, Araki Alejandra Saori, Araujo Ricardo N., Arensburger Peter, Benoit Joshua B., Brazil Reginaldo Pecanha, Bruno Rafaela V., Bueno da Silva Rivas Gustavo, Carvalho de Abreu Vinicius, Charamis Jason, Coutinho-Abreu Iliano V., da Costa-Latgé Samara G., Darby Alistair, Dillon Viv M., Emrich Scott J., Fernandez-Medina Daniela, Figueiredo Gontijo Nelder, Flanley Catherine M., Gatherer Derek, Genta Fernando A., Gesing Sandra, Giraldo-Calderón Gloria I., Gomes Bruno, Aguiar Eric Roberto Guimaraes Rocha, Hamilton James G. C., Hamarsheh Omar, Hawksworth Mallory, et al.. 2023. PLoS Neglected Tropical Diseases, 17 (4):e0010862, 35 p.

Genomic prediction in a multi-generation Eucalyptus globulus breeding population. Haristoy Geoffrey, Bouffier Laurent, Fontes Luis, Leal Luis, Paiva Jorge A. P., Pina João Pedro, Gion Jean-Marc. 2023. Tree Genetics and Genomes, 19:8, 17 p.

Genomic selection for salinity tolerance in japonica rice. Bartholome Jérôme, Frouin Julien, Brottier Laurent, Cao Tuong-Vi, Boisnard Arnaud, Ahmadi Nourollah, Courtois Brigitte. 2023. PloS One, 18 (9):e0291833, 22 p.

Genotyping by sequencing for SNP-Based linkage analysis and the development of KASPar markers for male sterility and polyembryony in citrus. Montalt Rafael, Cuenca José, Vives María Carmen, Mournet Pierre, Navarro Luis, Ollitrault Patrick, Aleza Pablo. 2023. Plants, 12 (7), n.spéc. Advances in Breeding, Genetics, and Genomics of Citrus:1567, 20 p.

Glutaredoxin regulation of primary root growth is associated with early drought stress tolerance in pearl millet. de la Fuente Carla, Grondin Alexandre, Sine Bassirou, Debieu Maryline, Belin Christophe, Hajjarpoor Amir, Atkinson Jonathan, Passot Sixtine, Salson Marine, Orjuela Julie, Tranchant-Dubreuil Christine, Brossier Jean-Rémy, Steffen Maxime, Morgado Charlotte, Dinh Hang Ngan, Pandey Bipin K., Darmau Julie, Champion Anthony, Petitot Anne-Sophie, Barrachina Célia, Pratlong Marine, Mounier Thibault, Nakombo-Gbassault Princia, Gantet Pascal, Gangashetty Prakash, Guédon Yann, Vadez Vincent, Reichheld Jean-Philippe, Bennett Malcolm J., Kane Ndjido Ardo, Guyomarc'h Soazig, Wells Darren, Vigouroux Yves, Laplaze Laurent. 2023. eLife, 12:RP86169, 21 p.

Herbarium specimen sequencing allows precise dating of Xanthomonas citri pv. citri diversification history. Campos Paola, Pruvost Olivier, Boyer Karine, Chiroleu Frédéric, Cao Thuy Trang, Gaudeul Myriam, Baider Claudia, Utteridge Timothy M. A., Becker Nathalie, Rieux Adrien, Gagnevin Lionel. 2023. Nature Communications, 14:4306, 13 p.

Identification of a major QTL-Controlling resistance to the subtropical race 4 of Fusarium oxysporum f. sp. cubense in Musa acuminata ssp. malaccensis. Chen Andrew, Sun Jiaman, Martin Guillaume, Gray Lesley-Ann, Hribova Eva, Christelová Pavla, Yahiaoui Nabila, Rounsley Steve, Lyons Rebecca, Batley Jacqueline, Chen Ning, Hamill Sharon, Rai Subash K., Coin Lachlan, Uwimana Brigitte, D'Hont Angélique, Dolezel Jaroslav, Edwards David P., Swennen Rony, Aitken Elizabeth A. B.. 2023. Pathogens, 12 (2), n.spéc. Current Research on Fusarium:289, 13 p.

Marker-assisted pyramiding of blast-resistance genes in a japonica elite rice cultivar through forward and background selection. Zampieri Elisa, Volante Andrea, Maré Caterina, Orasen Gabriele, Desiderio Francesca, Biselli Chiara, Canella Marco, Carmagnola Lorena, Milazzo Joëlle, Adreit Henri, Tharreau Didier, Poncelet Nicolas, Vaccino Patrizia, Valè Giampiero. 2023. Plants, 12 (4), n.spéc. Advances in Genetics and Breeding of Grain Crops:757, 17 p.

Mate selection: A useful approach to maximize genetic gain and control inbreeding in genomic and conventional oil palm (Elaeis guineensis Jacq.) hybrid breeding. Tchounke Billy, Sanchez Leopoldo, Bell Joseph Martin, Cros David. 2023. PLoS Computational Biology, 19 (9):e1010290, 27 p.

Multi-environment genomic selection in rice elite breeding lines. Nguyen Van Hieu, Morantte Rose Imee Zhella, Lopena Vitaliano, Verdeprado Holden, Murori Rosemary, Ndayiragije Alexis, Kumar Katiyar Sanjay, Islam Md Rafiqul, Juma Roselyne Uside, Flandez-Galvez Hayde, Glaszmann Jean-Christophe, Cobb Joshua N., Bartholome Jérôme. 2023. Rice, 16 (1), 17 p.

Optimization of multi-generation multi-location genomic prediction models for recurrent genomic selection in an upland rice population. De Verdal Hugues, Baertschi Cédric, Frouin Julien, Quintero Constanza, Ospina Yolima, Alvarez María Fernanda, Cao Tuong-Vi, Bartholome Jérôme, Grenier Cécile. 2023. Rice, 16:43, 18 p.

Phylogeny, ecology, and gene families covariation shaped the olfactory subgenome of rodents. Courcelle Maxime, Fabre Pierre-Henri, Douzery Emmanuel. 2023. Genome Biology and Evolution, 15 (11):evad197, 15 p.

The Ralstonia research community rejects the proposal to classify phylotype I Ralstonia into the new species Ralstonia nicotianae. Lowe-Power Tiffany M., Sharma Parul, Alfenas-Zerbini Poliane, Alvarez Belén, Arif Mohammad, Baroukh Caroline, Bocsanczy Ana Maria, Biosca Elena G., Castillo Jose A., Cellier Gilles, Coutinho Teresa A., Drenth André, Friman Ville-Petri, Genin Stéphane, Guidot Alice, Hikichi Yasufumi, Huang Qi, Iyer-Pascuzzi Anjali S., Kai Kenji, Pecrix Yann, Poussier Stéphane, Ray Jane D., Rossato Maurício, Schomer Rebecca, Siri Maria Inés, Vinatzer Boris A., Allen Caitilyn. 2023. PhytoFrontiers, 3 (4) : 761-766.

Recent advances in genome editing of bloodstream forms of Trypanosoma congolense using CRISPR-Cas9 ribonucleoproteins: Proof of concept. Minet Cécile, Chantal Isabelle, Berthier David. 2023. Experimental Parasitology, 252:108589, 10 p.

Shared pedigree relationships and transmission of unreduced gametes in cultivated banana. Martin Guillaume, Baurens Franc-Christophe, Labadie Karine, Hervouet Catherine, Salmon Frédéric, Marius Franck, Paulo-de-la-Reberdiere Nilda, Van Den Houwe Ines, Aury Jean-Marc, D'Hont Angélique, Yahiaoui Nabila. 2023. Annals of Botany, 131 (7) : 1149-1161.

Sugarcane mild mosaic virus: The rediscovery of an identified but unrecognized virus. Mollov Dimitre S., Filloux Denis, Grinstead Samuel, Bolus Stephen, Claude Lisa, Fernandez Emmanuel, Julian Charlotte, Candresse Thierry, Lockhart Benham E.L., Roumagnac Philippe, Rott Philippe, Daugrois Jean-Heinrich. 2023. Plant Pathology, 72 (2) : 312-321.

Suspicions of two bridgehead invasions of Xylella fastidiosa subsp. multiplex in France. Dupas Enora, Durand Karine, Rieux Adrien, Briand Martial, Pruvost Olivier, Cunty Amandine, Denancé Nicolas, Donnadieu Cecile, Legendre Bruno, Lopez-Roques Céline, Cesbron Sophie, Ravigné Virginie, Jacques Marie Agnès. 2023. Communications Biology, 6:103, 13 p.

Traces of introgression from cAus into Tropical Japonica observed in African upland rice varieties. Beye Abdoulaye, Billot Claire, Ronfort Joëlle, McNally Kenneth L., Diouf Diaga, Glaszmann Jean-Christophe. 2023. Rice, 16 (1), 20 p.

Visualizing and inferring chromosome segregation in the pedigree of an improved banana cultivar (gold finger) with genome ancestry mosaic painting. Cenci Alberto, Martin Guillaume, Breton Catherine, D'Hont Angélique, Yahiaoui Nabila, Sardos Julie, Rouard Mathieu. 2023. Horticulturae, 9 (12), n.spéc. Developments in the Genetics and Breeding of Banana Species:1330, 11 p.

When morphology does not fit the genomes: the case of rodent olfaction. Martinez Quentin, Courcelle Maxime, Douzery Emmanuel, Fabre Pierre-Henri. 2023. Biology Letters, 19 (4):20230080, 7 p.

Whole-genome sequences of Bipolaris bicolor, Curvularia hawaiiensis, Curvularia spicifera, and Exserohilum rostratum isolated from rice in Burkina Faso, France, Mali, and Pakistan. Kaboré Kouka Hilaire, Kassankogno Abalo Itolou, Adreit Henri, Ravel Sébastien, Charriat Florian, Diagne Diariatou, Lebrun Marc-Henri, Tharreau Didier. 2023. Mycology, 12 (11), 4 p.

The compact genome of the sponge Oopsacas minuta (Hexactinellida) is lacking key metazoan core genes. Santini Sébastien, Schenkelaars Quentin, Jourda Cyril, Duchesne Marc, Belahbib Hassiba, Rocher Caroline, Selva Marjorie, Riesgo Ana, Vervoort Michel, Leys Sally P., Kodjabachian Laurent, Le Bivic André, Borchiellini Carole, Claverie Jean-Michel, Renard Emmanuelle. 2023. BMC Biology, 21:139, 21 p.

The genome of a bunyavirus cannot be defined at the level of the viral particle but only at the scale of the viral population. Yvon Michel, German Thomas L., Ullman Diane E., Dasgupta Ranjit, Parker Maxwell H., Ben-Mahmoud Sulley, Verdin Eric, Gognalons Patrick, Ancelin Aurélie, Laï Kee Him Joséphine, Girard Justine, Vernerey Marie-Stéphanie, Fernandez Emmanuel, Filloux Denis, Roumagnac Philippe, Bron Patrick, Michalakis Yannis, Blanc Stéphane. 2023. Proceedings of the National Academy of Sciences of the United States of America, 120 (48):e2309412120, 10 p.

An overview of mapping quantitative trait loci in peanut (Arachis hypogaea L.). Kassie Fentanesh Chekole, Nguepjop Joël Romaric, Ngalle Bille Hermine, Assaha Dekoum V. M., Gessese Mesfin K., Abtew Wosene Gebreselassie, Tossim Hodo-Abalo, Sambou Aissatou, Seye Maguette, Rami Jean-François, Fonceka Daniel, Bell Joseph Martin. 2023. Genes, 14 (6), n.spéc. Peanut Genetics and Omics:1176, 23 p.

Across-population genomic prediction in grapevine opens up promising prospects for breeding. Brault Charlotte, Segura Vincent, This Patrice, Le Cunff Loïc, Flutre Timothée, François Pierre, Pons Thierry, Péros Jean-Pierre, Doligez Agnès. 2022. Horticulture Research, 9:uhac041, 13 p.

Ant phylogenomics reveals a natural selection hotspot preceding the origin of complex eusociality. Romiguier Jonathan, Borowiec Marek L., Weyna Arthur, Helleu Quentin, Loire Etienne, La Mendola Christine, Rabeling Christian, Fisher Brian L., Ward Philip S., Keller Laurent. 2022. Current Biology, 32 (13) : 2942-2947.

Association mapping of colour variation in a butterfly provides evidence that a supergene locks together a cluster of adaptive loci. Jay Paul, Leroy Manon, Le Poul Yann, Whibley Annabel, Arias Monica, Chouteau Mathieu, Joron Mathieu. 2022. Philosophical Transactions - Royal Society. Biological Sciences, 377 (1856), dossier Genomic architecture of supergenes: causes and evolutionary consequences, 14 p.

The Banana Genome Hub: A community database for genomics in the Musaceae. Droc Gaëtan, Martin Guillaume, Guignon Valentin, Summo Marilyne, Sempere Guilhem, Durant Eloi, Soriano Alexandre, Baurens Franc-Christophe, Cenci Alberto, Breton Catherine, Shah Trushar, Aury Jean-Marc, Ge Xue-Jun, Harrison Pat Heslop, Yahiaoui Nabila, D'Hont Angélique, Rouard Mathieu. 2022. Horticulture Research, 9:uhac221, 10 p.

CAULIFINDER: A pipeline for the automated detection and annotation of caulimovirid endogenous viral elements in plant genomes. Vassilieff Héléna, Haddad Sana, Jamilloux Véronique, Choisne Nathalie, Sharma Vikas, Giraud Delphine, Wan Mariène, Serfraz Saad, Geering Andrew D., Teycheney Pierre-Yves, Maumus Florian. 2022. Mobile DNA, 13:31, 12 p.

CulebrONT: A streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes. Orjuela Castellanos Julie, Comte Aurore, Ravel Sébastien, Charriat Florian, Vi Tram, Sabot François, Cunnac Sébastien. 2022. Peer Community Journal, 2:e46, 9 p.

Divergence of olfactory receptors associated with the evolution of assortative mating and reproductive isolation in mice. Smadja Carole M., Loire Etienne, Caminade Pierre, Severac Dany, Gautier Mathieu, Ganem Guila. 2022. Peer Community Journal, 2:e72, 29 p.

EggLib 3: A python package for population genetics and genomics. Siol Mathieu, Coudoux Thomas, Ravel Sébastien, De Mita Stéphane. 2022. Molecular Ecology Resources, 22 (8) : 3176-3187.

GeMo: A web-based platform for the visualization and curation of genome ancestry mosaics. Summo Marilyne, Comte Aurore, Martin Guillaume, Perelle Pierrick, Weitz Eric M., Droc Gaëtan, Rouard Mathieu. 2022. Database, 2022:baac057 : 1-5.

Genome characterization and complete sequence of a new badnavirus from Pandanus amaryllifolius. Alvarez-Quinto Robert A., Grinstead Samuel, Rott Philippe, Mollow Dimitre. 2022. Archives of Virology, 167 : 1717-1720.

Genome properties of key oil palm (Elaeis guineensis Jacq.) breeding populations. Seyum Essubalew Getachew, Ngalle Bille Hermine, Abtew Wosene Gebreselassie, Rastas Pasi, Arifianto Deni, Domonhedo Hubert, Cochard Benoît, Jacob Florence, Riou Virginie, Pomies Virginie, Lopez David, Bell Joseph Martin, Cros David. 2022. Journal of Applied Genetics, 63 : 633-650.

Genome-wide analysis of hybridization in wild boar populations reveals adaptive introgression from domestic pig. Mary Nicolas, Iannuccelli Nathalie, Petit Geoffrey, Bonnet Nathalie, Pinton Alain, Barasc Harmonie, Faure Amélie, Calgaro Anne, Grosbois Vladimir, Servin Bertrand, Ducos Alain, Riquet Juliette. 2022. Evolutionary Applications, 15 (7) : 1115-1128.

Genome-wide association studies and genomic selection assays made in a large sample of cacao (Theobroma cacao L.) germplasm reveal significant marker-trait associations and good predictive value for improving yield potential. Bekele Frances L., Bidaisee Gillian, Allegre Mathilde, Argout Xavier, Fouet Olivier, Boccara Michel, Saravanakumar Duraisamy, Bekele Isaac, Lanaud Claire. 2022. PloS One, 17 (10):e0260907, 35 p.

Genome-wide footprints in the carob tree (Ceratonia siliqua) unveil a new domestication pattern of a fruit tree in the Mediterranean. Baumel Alex, Feliner Gonzalo Nieto, Médail Frédéric, La Malfa Stefano, Di Guardo Mario, Bou Dagher Kharrat Magda, Lakhal-Mirleau Fatima, Frelon Valentine, Ouahmane Lahcen, Diadema Katia, Sanguin Hervé, Viruel Juan. 2022. Molecular Ecology, 31 (15) : 4095-4111.

Genomic footprints of selection in early-and late-flowering pearl millet landraces. Faye Adana, Barnaud Adeline, Kane Ndjido Ardo, Cubry Philippe, Mariac Cédric, Burgarella Concetta, Rhone Bénédicte, Faye Aliou, Olodo Katina Floride, Cisse Aby, Couderc Marie, Dequincey Anaïs, Zekraoui Leïla, Moussa Djibo, Tidjani Moussa, Vigouroux Yves, Berthouly-Salazar Cécile. 2022. Frontiers in Plant Science, 13:880631, 13 p.

Genomic prediction of zinc-biofortification potential in rice gene bank accessions. Rakotondramanana Mbolatantely, Tanaka Ryokei, Pariasca-Tanaka Juan, Stangoulis James, Grenier Cécile, Wissuwa Matthias. 2022. Theoretical and Applied Genetics, 135 : 2265-2278.

Genomicus in 2022: Comparative tools for thousands of genomes and reconstructed ancestors. Nguyen Nga Thi Thuy, Vincens Pierre, Dufayard Jean François, Roest Crollius Hugues, Louis Alexandra. 2022. Nucleic Acids Research, 50 (1) : 1025-1031.

Identification of QTLs controlling resistance to anthracnose disease in water yam (Dioscorea alata). Agre Paterne Angelot, Darkwa Kwabena, Olasanmi Bunmi, Kolade Olufisayo, Mournet Pierre, Bhattacharjee Ranjana, Lopez-Montes Antonio, De Koeyer David, Adebola Patrick, Kumar Lava, Asiedu Robert, Asfaw Asrat. 2022. Genes, 13 (2), n.spéc. Research on Tropical Food Crop Genomics:347, 16 p.

Identification of a novel vitivirus from pineapple in Reunion Island. Massé Delphine, Filloux Denis, Candresse Thierry, Massart Sébastien, Marals Armelle, Verdin Eric, Cassam Nathalie, Fernandez Emmanuel, Roumagnac Philippe, Teycheney Pierre-Yves, Lefeuvre Pierre, Lett Jean-Michel. 2022. Archives of Virology, 167 : 2355-2357.

Incipient speciation between host-plant strains in the fall armyworm. Durand Karine, Yainna Kumarihami Sudeeptha, Nam Kiwoong. 2022. BMC Ecology and Evolution, 22 (1), 8 p.

Interest of phenomic prediction as an alternative to genomic prediction in grapevine. Brault Charlotte, Lazerges Juliette, Doligez Agnès, Thomas Miguel, Ecarnot Martin, Roumet Pierre, Bertrand Yves, Berger Gilles, Pons Thierry, François Pierre, Le Cunff Loïc, This Patrice, Segura Vincent. 2022. Plant Methods, 18 (1):108, 13 p.

PanExplorer: A web-based tool for exploratory analysis and visualization of bacterial pan-genomes. Dereeper Alexis, Summo Marilyne, Meyer Damien. 2022. Bioinformatics, 38 (18) : 4412-4414.

Perspective for genomic-enabled prediction against black sigatoka disease and drought stress in polyploid species. Mbo Nkoulou Luther Fort, Ngalle Bille Hermine, Cros David, Adje Charlotte O.A., Fassinou Nicodeme V. H., Bell Joseph, Achigan-Dako Enoch G.. 2022. Frontiers in Plant Science, 13, 18 p.

Quantitative and population genomics suggest a broad role of stay-green loci in the drought adaptation of sorghum. Faye Jacques, Akata Eyanawa, Sine Bassirou, Diatta Cyril, Cissé Ndiaga, Fonceka Daniel, Morris Geoffrey P.. 2022. Plant Genome, 15 (1):e20176, 17 p.

RedOak: A reference-free and alignment-free structure for indexing a collection of similar genomes. Agret Clément, Chateau Annie, Droc Gaëtan, Sarah Gautier, Ruiz Manuel, Mancheron Alban. 2022. Journal of Open Source Software, 7 (80):4363, 4 p.

Refining the Camelus dromedarius myostatin gene polymorphism through worldwide whole-genome sequencing. Bruno Silvia, Landi Vincenzo, Senczuk Gabriele, Brooks Samantha Ann, Almathen Faisal, Faye Bernard, Gaouar Suheil Semir Bechir, Piro Mohammed, Kim Kwan Suk, David Xavier, Eggen André, Burger Pamela A., Ciani Elena. 2022. Animals, 12 (16):2068, 12 p.

Spodoptera littoralis genome mining brings insights on the dynamic of expansion of gustatory receptors in polyphagous noctuidae. Meslin Camille, Mainet Pauline, Montagné Nicolas, Robin Stéphanie, Legeai Fabrice, Bretaudeau Anthony, Johnston J Spencer, Koutroumpa Fotini, Persyn Emma, Monsempès Christelle, François Marie-Christine, Jacquin-Jolyb Emmanuelle. 2022. G3 - Genes Genomes Genetics, 12 (8):jkac131, 12 p.

Two viruses associated with mosaic symptoms in pandan grass (Pandanus amaryllifolius) in Florida. Alvarez-Quinto Robert A., Grinstead Samuel, Rott Philippe, Mollov Dimitre S.. 2022. Phytopathology, 112 (11S), suppl. Plant Health 2022, Résumé, S3.164 Plant Health 2022, Pittsburgh, États-Unis, 6 Août 2022/10 Août 2022.

Wild boars as reservoir of highly virulent clone of hybrid shiga toxigenic and enterotoxigenic Escherichia coli responsible for edema disease, France. Perrat Alexandre, Branchu Priscilla, Decors Anouk, Turci Silvia, Bayon-Auboyer Marie-Hélène, Petit Geoffrey, Grosbois Vladimir, Brugère Hubert, Auvray Frédéric, Oswald Eric. 2022. Emerging Infectious Diseases, 28 (2) : 382-393.

A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae. Wang Ziwei, Rouard Mathieu, Biswas Manosh Kumar, Droc Gaëtan, Cui Dongli, Roux Nicolas, Baurens Franc-Christophe, Ge Xue-Jun, Schwarzacher Trude, Heslop-Harrison Pat, Liu Qing. 2022. GigaScience, 11:giac027, 21 p.

A chromosome-level, haplotype-phased genome assembly for Vanilla planifolia highlights that partial endoreplication challenges accurate whole genome assembly. Piet Quentin, Droc Gaëtan, Marande William, Sarah Gautier, Bocs Stéphanie, Klopp Christophe, Bourge Mickael, Siljak-Yakovlev Sonja, Bouchez Olivier, Lopez-Roques Céline, Lepers-Andrzejewski Sandra, Bourgois Laurent, Zucca Joseph, Dron Michel, Besse Pascale, Grisoni Michel, Jourda Cyril, Charron Carine. 2022. Plant Communications, 3:100330, 15 p.

A curated dataset of peste des petits ruminants virus sequences for molecular epidemiological analyses. Baron Michael D., Bataille Arnaud. 2022. PloS One, 17 (2):e0263616, 22 p.

The highly repeat-diverse (Peri) centromeres of white lupin (Lupinus albus L.). Marques André, Hufnagel Maciel Bárbara, Soriano Alexandre, Péret Benjamin. 2022. Frontiers in Plant Science, 13:862079, 10 p.

The rice ILI2 locus is a bidirectional target of the African Xanthomonas oryzae pv. oryzae major transcription activator-like effector TalC but does not contribute to disease susceptibility. Doucoure Hinda, Auguy Florence, Baufume Servane, Fabre Sandrine, Gabriel Marc, Thomas Emilie, Dambreville Fleur, Sciallano Coline, Szurek Boris, Koita Ousmane, Verdier Valérie, Cunnac Sébastien. 2022. International Journal of Molecular Sciences, 23 (10):5559, 20 p.

Association mapping and genomic selection for sorghum adaptation to tropical soils of Brazil in a sorghum multiparental random mating population. Bernardino Karine C., de Menezes Cícero B., de Sousa Sylvia M., Guimaraes Claudia Teixeira, Carneiro Pedro C.S., Schaffert Robert E., Kochian Leon V., Hufnagel Maciel Bárbara, Pastina Maria Marta, Magalhaes Jurandir V.. 2021. Theoretical and Applied Genetics, 134 (1) : 295-312.

Badnaviruses and banana genomes: A long association sheds light on Musa phylogeny and origin. Chabannes Matthieu, Gabriel Marc, Aksa Abderrahmane, Galzi Serge, Dufayard Jean François, Iskra Caruana Marie-Line, Muller Emmanuelle. 2021. Molecular Plant Pathology, 22 (2) : 216-230.

Breeding for nitrogen use efficiency: Lessons from genomic prediction experiments based on a broad-based population of upland rice. Rakotomalala Joël, Vom Brocke Kirsten, Frouin Julien, Pot David, Rabekijana Ravonantenaina Rhodia, Ramanantsoanirina Alain, Ratsimiala Ramonta Isabelle, Cao Tuong-Vi. 2021. Rice Research: Open Access, 9 (9):1000264, 26 p.

Coconut genome assembly enables evolutionary analysis of palms and highlights signaling pathways involved in salt tolerance. Yang Yaodong, Bocs Stéphanie, Fan Haikuo, Armero Alix, Baudouin Luc, Xu Pengwei, Xu Junyang, This Dominique, Hamelin Chantal, Iqbal Amjad, Qadri Rashad, Zhou Lixia, Li Jing, Wu Yi, Ma Zilong, Issali Auguste Emmanuel, Rivallan Ronan, Liu Na, Xia Wei, Peng Ming, Xiao Yong. 2021. Communications Biology, 4:105, 14 p.

Contribution of historical herbarium small RNAs to the reconstruction of a cassava mosaic geminivirus evolutionary history. Rieux Adrien, Campos Paola, Duvermy Arnaud, Scussel Sarah, Martin Darren Patrick, Gaudeul Myriam, Lefeuvre Pierre, Becker Nathalie, Lett Jean-Michel. 2021. Scientific Reports, 11 (1):21280, 12 p.

DILS: Demographic inferences with linked selection by using ABC. Fraïsse Christelle, Popovic Iva, Mazoyer Clément, Spataro Bruno, Delmotte Stéphane, Romiguier Jonathan, Loire Etienne, Simon Alexis, Galtier Nicolas, Duret Laurent, Bierne Nicolas, Vekemans Xavier, Roux Camille. 2021. Molecular Ecology Resources, 21 (8), n.spéc. : 2629-2644.

Draft genome sequences of 284 Xanthomonas citri pv. citri strains causing Asiatic citrus canker. Richard Damien, Rieux Adrien, Lefeuvre Pierre, Hamza Abdou Azali, Lobin Kanta Kumar, Naiken Marc, Stravens Randy, Boyer Claudine, Boyer Karine, Javegny Stéphanie, Pruvost Olivier. 2021. Microbiology Resource Announcements, 10 (1):e01024-20, 2 p.

Extrachromosomal viral DNA produced by transcriptionally active endogenous viral elements in non-infected banana hybrids impedes quantitative PCR diagnostics of banana streak virus infections in banana hybrids. Ricciuti Emeline, Laboureau Nathalie, Noumbissié Guy, Chabannes Matthieu, Sukhikh Natalia, Pooggin Mikhail, Iskra Caruana Marie-Line. 2021. Journal of General Virology, 102 (11), 14 p.

First historical genome of a crop bacterial pathogen from herbarium specimen: Insights into citrus canker emergence. Campos Paola, Groot Crego Clara, Boyer Karine, Gaudeul Myriam, Baider Claudia, Richard Damien, Pruvost Olivier, Roumagnac Philippe, Szurek Boris, Becker Nathalie, Gagnevin Lionel, Rieux Adrien. 2021. PLoS Pathogens, 17 (7):e1009714, 25 p.

Free-living, psychrotrophic bacteria of the Genus Psychrobacter are descendants of pathobionts. Welter Daphne K., Ruaud Albane, Henseler Zachariah M., De Jong Hannah N., Van Coeverden de Groot Peter, Michaux Johan, Gormezano Linda, Waters Jillian L., Youngblut Nicholas D., Ley Ruth E.. 2021. mSystems, 6 (2), 20 p.

GARP transcription factors repress Arabidopsis nitrogen starvation response via ROS-dependent and -independent pathways. Safi Alaeddine, Medici Anna, Szponarski Wojciech, Martin Florence, Clément-Vidal Anne, Marshall-Colón Amy, Ruffel Sandrine, Gaymard F., Rouached Hatem, Leclercq Julie, Coruzzi Gloria M., Lacombe Benoit, Krouk G.. 2021. Journal of Experimental Botany, 72 (10) : 3881-3901.

Genetic diversity of Rice stripe necrosis virus and new insights into evolution of the genus Benyvirus. Bagayoko Issiaka, Celli Marcos Giovanni, Romay Gustavo, Poulicard Nils, Pinel-Galzi Agnès, Julian Charlotte, Filloux Denis, Roumagnac Philippe, Sérémé Drissa, Bragard Claude, Hebrard Eugénie. 2021. Viruses, 13:737, 12 p.

Genome Sequence Resource of 'Candidatus Liberibacter asiaticus' from Diaphorina citri Kuwayama (Hemiptera: Liviidae) from La Réunion. Lu Jinming, Delatte Hélène, Reynaud Bernard, Beattie George A.C., Holford Paul, Cen Yijing, Wang Yanjing. 2021. Plant Disease, 105 (3) : 1171-1173.

Genome characterization and diversity of trifolium virus 1: identification of a novel legume-infecting capulavirus. Ma Yuxin, Svanella‑Dumas Laurence, Julian Charlotte, Galzi Serge, Fernandez Emmanuel, Yvon Michel, Pirolles Elodie, Lefebvre Marie, Filloux Denis, Roumagnac Philippe, Candresse Thierry. 2021. Archives of Virology, 166 : 2573-2578.

Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen. Frontini Mathias, Boisnard Arnaud, Frouin Julien, Ouikene Malika, Morel Jean-Benoit, Ballini Elsa. 2021. BMC Plant Biology, 21 (1):99, 12 p.

Genome-wide association study of nitrogen use efficiency and agronomic traits in upland rice. Rakotoson Tatiana, Dusserre Julie, Letourmy Philippe, Frouin Julien, Ratsimiala Ramonta Isabelle, Rakotoarisoa Noronirina Victorine, Cao Tuong-Vi, Vom Brocke Kirsten, Ramanantsoanirina Alain, Ahmadi Nourollah, Raboin Louis-Marie. 2021. Rice Science, 28 (4) : 379-390.

Genomic prediction of arsenic tolerance and grain yield in rice: Contribution of trait-specific markers and multi-environment models. Ahmadi Nourollah, Cao Tuong-Vi, Frouin Julien, Norton Gareth J., Price Adam H.. 2021. Rice Science, 28 (3) : 268-278.

GreenPhylDB v5: A comparative pangenomic database for plant genomes. Guignon Valentin, Toure Abdel, Droc Gaëtan, Dufayard Jean François, Conte Matthieu, Rouard Mathieu. 2021. Nucleic Acids Research, 49 (D1) : D1464-D1471.

Identification of the begomoviruses squash leaf curl virus and watermelon chlorotic stunt virus in various plant samples in North America. Fontenele Rafaela S, Bhaskara Amulya, Cobb Ilaria N., Majure Lucas C., Salywon Andrew M., Avalos-Calleros Jesús, Argüello‐Astorga Gerardo R., Schmidlin Kara, Roumagnac Philippe, Ribeiro Simone G., Kraberger Simona, Martin Darren Patrick, Lefeuvre Pierre, Varsani Arvind. 2021. Viruses, 13 (5):810, 17 p.

Integration of genomics with crop modeling for predicting rice days to flowering: A multi-model analysis. Yang Yubin, Wilson Lloyd Ted, Li Tao, Paleari Livia, Confalonieri Roberto, Zhu Yan, Tang Liang, Qiu Xiaolei, Tao Fulu, Chen Yi, Hoogenboom Gerrit, Boote Ken, Gao Yujing, Onogi Akio, Nakagawa Hiroshi, Yoshida Hiroe, Yabe Shiori, Dingkuhn Michael, Lafarge Tanguy, Wang Jing, Hasegawa Toshihiro. 2021. Field Crops Research, 276:108394, 15 p.

Mécanismes adaptatifs facilitant l'alternance d'hôte chez le virus de la fièvre catarrhale ovine. Moreau Yannis. 2021. Montpellier : Université de Montpellier, 178 p. Thèse de doctorat : Ecologie, évolution, ressources génétiques, paléontologie : Université de Montpellier

Nanopore sequencing is a credible alternative to recover complete genomes of geminiviruses. Ben Chehida Sélim, Filloux Denis, Fernandez Emmanuel, Moubset Oumaima, Hoareau Murielle, Julian Charlotte, Blondin Laurence, Lett Jean-Michel, Roumagnac Philippe, Lefeuvre Pierre. 2021. Microorganisms, 9:903, 15 p.

Novel ampeloviruses infecting cassava in Central Africa and the South-West Indian Ocean Islands. Kwibuka Yves, Bisimwa Espoir, Blouin Arnaud G., Bragard Claude, Candresse Thierry, Faure Chantal, Filloux Denis, Lett Jean-Michel, Maclot François, Marais Armelle, Ravelomanantsoa Santatra, Shakir Sara, Vanderschuren Hervé, Massart Sébastien. 2021. Viruses, 13 (6), n.spéc. Plant Virus Surveillance and Metagenomics:1030, 17 p.

Pangenome of white lupin provides insights into the diversity of the species. Hufnagel Maciel Bárbara, Soriano Alexandre, Taylor Jemma, Divol Fanchon, Kroc Magdalena, Sanders Heather, Yeheyis Likawent, Nelson Matthew, Péret Benjamin. 2021. Plant Biotechnology Journal, 19 (12) : 2532-2543.

Segregation distortion for male parents in high density genetic maps from reciprocal crosses between two self-incompatible cultivars confirms a gametophytic system for self-incompatibility in citrus. Ollitrault Patrick, Ahmed Dalel, Costantino Gilles, Evrard Jean-Charles, Cardi Céline, Mournet Pierre, Perdereau Aude, Froelicher Yann. 2021. Agriculture (Basel), 11 (5):379, 21 p.

Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing. Belser Caroline, Baurens Franc-Christophe, Noël Benjamin, Martin Guillaume, Cruaud Corinne, Istace Benjamin, Yahiaoui Nabila, Labadie Karine, Hribova Eva, Dolezel Jaroslav, Lemainque Arnaud, Wincker Patrick, D'Hont Angélique, Aury Jean-Marc. 2021. Communications Biology, 4:1047, 12 p.

Three founding ancestral genomes involved in the origin of sugarcane. Pompidor Nicolas, Charron Carine, Hervouet Catherine, Bocs Stéphanie, Droc Gaëtan, Rivallan Ronan, Manez Aurore, Mitros Therese, Swaminathan Kankshita, Glaszmann Jean-Christophe, Garsmeur Olivier, D'Hont Angélique. 2021. Annals of Botany, 127 (6) : 827-840.

Time-calibrated genomic evolution of a monomorphic bacterium during its establishment as an endemic crop pathogen. Richard Damien, Pruvost Olivier, Balloux François, Boyer Claudine, Rieux Adrien, Lefeuvre Pierre. 2021. Molecular Ecology, 30 (8) : 1823-1835.

Tomato interveinal yellowing virus: A novel tomato-infecting monopartite begomovirus from Côte d'Ivoire. N'Cho Anthelme Jocelin, Seka Koutoua, Hoareau Murielle, Konan Arthur, Fondio Lassina, Lefeuvre Pierre, Martin Thibaud, Coulibaly Noupe, Lett Jean-Michel. 2021. Archives of Virology, 166 : 1755-1758.

Unravelling rubber tree growth by integrating GWAS and biological network-based approaches. Francisco Felipe Roberto, Hild Aono Alexandre, Da Silva Carla Cristina, Gonçalves Paulo S., Scaloppi Junior Erivaldo José, Le Guen Vincent, Fritsche-Neto Roberto, Moura Souza Livia, Pereira de Souza Anete. 2021. Frontiers in Plant Science, 12:768589, 20 p.

The complete chloroplast genome of Artocarpus altilis (Moraceae) and phylogenetic relationships. Borges de Souza Ueric José, dos Santos Raíssa Nunes, de Araújo Filho Renisson Neponuceno, dos Santos Gil Rodrigues, Almeida Sarmento Renato, De Bellis Fabien, Campos Fabrício Souza. 2021. Mitochondrial DNA. Part B. Resources, 6 (8) : 2291-2293.

Bartonella gabonensis sp. nov., a new Bartonella species from savannah rodent Lophuromys sp. in Franceville, Gabon. Mangombi-Pambou J.B., N'Dilimabaka Nadine, Medkour H., Banga O.L., Tall M.L., Ben Khedher M., Terras J., Abdi S., Bourgarel Mathieu, Leroy E., Fenollar Florence, Mediannikov Oleg. 2020. New Microbes and New Infections, 38:100796, 9 p.

Beyond seek and destroy: How to generate allelic series using genome editing tools. Herbert Leo, Meunier Anne Cecile, Bes Martine, Vernet Aurore, Portefaix Murielle, Durandet Franz, Michel Rémy, Chaine Christian, This Patrice, Guiderdoni Emmanuel, Périn Christophe. 2020. Rice, 13:5, 9 p.

Bread wheat TaSPO11-1 exhibits evolutionarily conserved function in meiotic recombination across distant plant species. Da Ines Olivier, Michard Robin, Fayos Ian, Bastianelli Giacomo, Nicolas Alain, Guiderdoni Emmanuel, White Charles, Sourdille Pierre. 2020. Plant Journal, 103 (6) : 2052-2068.

Caractérisation de génomes mosaïques de plantes cultivées : évaluation méthodologique et application aux bananiers. Cottin Aurélien. 2020. Montpellier : Montpellier SupAgro, 167 p. Thèse de doctorat : Biodiversité, agriculture, alimentation, environnement, terre, eau : Montpellier SupAgro

Complete genome sequence reveals evolutionary and comparative genomic features of Xanthomonas albilineans causing sugarcane leaf scald. Zhang Hui-Li, Ntambo Mbuya Sylvain, Rott Philippe, Chen Gongyou, Chen Li-Lan, Huang Mei-Ting, Gao San-Ji. 2020. Microorganisms, 8 (2):182, 16 p.

Convergent evolution leading to the appearance of furanocoumarins in citrus plants. Limones-Mendez Mariana, Dugrand-Judek Audray, Villard Cloé, Coqueret Victoire, Froelicher Yann, Bourgaud Frédéric, Olry Alexandre, Hehn Alain. 2020. Plant Science, 292:110392, 9 p.

Diverse genomoviruses representing twenty-nine species identified associated with plants. Fontenele Rafaela S, Roumagnac Philippe, Richet Cécile, Kraberger Simona, Stainton Daisy, Aleamotu‘a Maketalena, Filloux Denis, Bernardo Pauline, Harkins Gordon William, McCarthy James, Charles Lachlan S., Lamas Natalia S., Abreu Emanuel F. M., Abreu Rayane A., Batista Graciete B., Lacerda Ana L. M., Salywon Andrew M., Wojciechowski Martin, Majure Lucas C., Martin Darren Patrick, Ribeiro Simone G., Lefeuvre Pierre, Varsani Arvind. 2020. Archives of Virology, 165 (12) : 2891-2901.

Evaluation of un-methylated DNA enrichment in sequencing of African swine fever virus complete genome. Pereira De Oliveira Rémi, Lucas Pierrick, Chastagner Amélie, De Boisseson Claire, Vial Laurence, Le Potier Marie-Frédérique, Blanchard Yannick. 2020. Journal of Virological Methods, 285:113959, 7 p.

Evolutionarily conserved plant genes responsive to root-knot nematodes identified by comparative genomics. Zotta Mota Ana, Fernandez Diana, Arraes Fabricio B.M., Petitot Anne-Sophie, Paes de Melo Bruno, Lisei de Sa Maria E., Grynberg Priscila, Passos Saraiva Mario A., Messenberg Guimaraes Patricia, Brasileiro Ana Christina Miranda, Albuquerque Erika Valeria Saliba, Danchin Etienne G. J., Grossi-de-Sa Maria Fatima. 2020. Molecular Genetics and Genomics, 295 (4) : 1063-1078.

Genome ancestry mosaics reveal multiple and cryptic contributors to cultivated banana. Martin Guillaume, Cardi Céline, Sarah Gautier, Ricci Sebastien, Jenny Christophe, Fondi Emmanuel, Perrier Xavier, Glaszmann Jean-Christophe, D'Hont Angélique, Yahiaoui Nabila. 2020. Plant Journal, 102 (5) : 1008-1025.

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Genome-wide genotyping elucidates the geographical diversification and dispersal of the polyploid and clonally propagated yam (Dioscorea alata L.). Sharif Bilal Muhammad, Burgarella Concetta, Cormier Fabien, Mournet Pierre, Causse Sandrine, Nguyen Van Kien, Kaoh Juliane, Rajaonah Mamy Tiana, Lakshan Senanayake Ravinda, Waki Jeffrey, Bhattacharjee Ranjana, Badara Gueye, Pachakkil Babil, Arnau Gemma, Chaïr Hâna. 2020. Annals of Botany, 6 (2) : 1029-1038.

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Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics. Vorobev Alexey, Dupouy Marion, Carradec Quentin, Delmont Tom O., Annamalé Anita, Wincker Patrick, Pelletier Eric. 2020. Genome Research, 30 (4) : 647-659.

Whole genome sequencing and phylogenetic characterization of a novel bat-associated picornavirus-like virus with an unusual genome organization. Temmam Sarah, Hul Vibol, Bigot Thomas, Bessaud Maël, Chrétien Delphine, Hoem Thavry, Gorman Christopher, Duong Veasna, Dussart Philippe, Cappelle Julien, Eloit Marc. 2020. Infection, Genetics and Evolution, 78:104130, 5 p.

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Bayesian evolution analyses suggests the global spread of Xanthomonas cynarae pv. gardneri occurred during the global adoption of hybrid tomato seed. Jibrin Mustafa O., Potnis Neha, Timilsina Sujan, Minsavage Gerald V., Shutt Vou M., Coutinho Teresa A., Pruvost Olivier, Siri M.I., Pianzzola M.J., Quezado Duval Art M., Nikolaeva Ekaterina V., Egel Daniel S., Creswell Tom, Ruhl Gail E., Maynard Lystranne, Gulig P., Vallad Gary E., Roberts Pamela D., Goss Erica, Jones Jeffrey B.. 2019. Phytopathology, 109 (10S), suppl. Plant Health 2019, Résumé : 141-142. American Phytopathological Society 2019 Annual Meeting, Cleveland, États-Unis, 3 Août 2019/7 Août 2019.

Complete genome sequence of Bradyrhizobium sp. strain ORS3257, an efficient nitrogen-fixing bacterium isolated from cowpea in Senegal. Le Quéré Antoine, Gully Djamel, Teulet Albin, Navarro Elisabeth, Gargani Daniel, Fardoux Joël, Cruveiller Stéphane, Neyra Marc, Giraud Eric, Krasova-Wade Tatiana. 2019. Microbiology Resource Announcements, 8 (3):e01449, 2 p.

Development of the automated primer design workflow uniqprimer and diagnostic primers for the broad-host-range plant pathogen Dickeya dianthicola. Karim Shaista, McNally R. Ryan, Nasaruddin Afnan S., Dereeper Alexis, Mauleon Ramil P., Charkowski Amy O., Leach Jan E., Ben-Hur Asa, Triplett Lindsay R.. 2019. Plant Disease, 103 (11) : 2893-2902.

Effector profiles of Xanthomonas perforans and X. euvesicatoria provide insights into the evolution of host range and virulence in BLS pathogens. Iruegas-Bocardo Fernanda, Timilsina Sujan, Jibrin Mustafa O., Minsavage Gerald V., Abrahamian Peter, Egel Daniel S., Creswell Tom, Miller Sydney, Rotondo Francesca, Louws Frank John, Adhikari Tushar, Trueman Cheryl L., Roach Rebecca, Coutinho Teresa A., Pruvost Olivier, Nga Nguyen Thi Thu, Luo Laixin, Kebede Misrak, Potnis Neha, Vallad Gary E., Jones Jeffrey B., Goss Erica. 2019. Phytopathology, 109 (10S), suppl. Plant Health 2019, Résumé : 21-22. American Phytopathological Society 2019 Annual Meeting, Cleveland, États-Unis, 3 Août 2019/7 Août 2019.

Fine scale genomic signals of admixture and alien introgression among Asian rice landraces. Santos Joao, Chebotarov Dmytro, McNally Kenneth L., Bartholome Jérôme, Droc Gaëtan, Billot Claire, Glaszmann Jean-Christophe. 2019. Genome Biology and Evolution, 11 (5) : 1358-1373.

Genome-wide analysis of the barley non-specific lipid transfer protein gene family. Zhang Mengyue, Kim Yujin, Zong Jie, Lin Hong, Diévart Anne, Li Huanjun, Zhang Dabing, Liang Wanqi. 2019. Crop Journal, 7 (1) : 65-76.

Genomic diversity and recombination among Xylella fastidiosa subspecies. Vanhove Mathieu, Retchless Adam C., Sicard Anne, Rieux Adrien, Coletta-Filho Helvécio D, De La Fuente Leonardo, Stenger Drake C., Almeida Rodrigo P.P.. 2019. Applied and Environmental Microbiology, 85 (13):e02972-18, 17 p.

Genomic signatures of adaptation to Sahelian and Soudanian climates in sorghum landraces of Senegal. Faye Jacques, Maina Fanna, Hu Zhenbin, Foncéka Daniel, Cissé Ndiaga, Morris Geoffrey P.. 2019. Ecology and Evolution, 9 (10) : 6038-6051.

High‑throughput sequencing of complete genomes of ipomoviruses associated with an epidemic of cassava brown streak disease in the Comoros Archipelago. Scussel Sarah, Candresse Thierry, Marais Armelle, Claverie Sohini, Hoareau Murielle, Azali Hamza Abdou, Verdin Eric, Tepfer Mark, Filloux Denis, Fernandez Emmanuel, Roumagnac Philippe, Robene Isabelle, Lefeuvre Pierre, Jourda Cyril, Roux-Cuvelier Michel, Lett Jean-Michel. 2019. Archives of Virology, 164 (8) : 2193-2196.

Mapping and exploiting the citrus genome. Ollitrault Patrick. 2019. In : Achieving sustainable cultivation of tropical fruits. Yahia Elhadi M. (ed.). Cambridge : Burleigh Dodds Science Publishing, 3-42. (Burleigh Dodds Series in Agricultural Science) ISBN 978-1-78676-284-9

Musa balbisiana genome reveals subgenome evolution and functional divergence. Wang Zhuo, Miao Hongxia, Liu Juhua, Xu Biyu, Yao Xiaoming, Xu Chunyan, Zhao Shancen, Fang Xiaodong, Jia Caihong, Wang Jingyi, Zhang Jianbin, Li Jing, Xu Yi, Wang Jiashui, Ma Weihong, Wu Zhixiang, Yu Lili, Yang Yulan, Liu Chun, Guo Yu, Sun Silong, Baurens Franc-Christophe, Martin Guillaume, Salmon Frédéric, Garsmeur Olivier, Yahiaoui Nabila, Hervouet Catherine, Rouard Mathieu, Laboureau Nathalie, Habas Rémy, Ricci Sebastien, Peng Ming, Guo Anping, Xie Jianghui, Li Yin, Ding Zehong, Yan Yan, Tie Weiwei, D'Hont Angélique, Hu Wei, Jin Zhiqiang. 2019. Nature Plants, 5 : 810-821.

Next-generation sequencing accelerates crop gene discovery. le Nguyen Khanh, Grondin Alexandre, Courtois Brigitte, Gantet Pascal. 2019. Trends in Plant Science, 24 (3) : 263-274.

Pervasive hybridizations in the history of wheat relatives. Glemin Sylvain, Scornavacca Céline, Dainat Jacques, Burgarella Concetta, Viader Véronique, Ardisson Morgane, Sarah Gautier, Santoni Sylvain, David Jacques, Ranwez Vincent. 2019. Science Advances, 5 (5), 10 p.

Plasmodium vivax malaria viewed through the lens of an eradicated european strain. van Dorp Lucy, Gelabert Pere, Rieux Adrien, de Manuel Marc, de-Dios Toni, Gopalakrishnan Shyam, Caroe christian, Sandoval-Velasco Marcela, Fregel Rosa, Olalde Iñigo, Escosa Raül, Aranda Carles, Huijben Silvie, Mueller Ivo, Marquès-Bonet Tomàs, Balloux François, Gilbert M. Thomas P., Lalueza-Fox Carles. 2019. Molecular Biology and Evolution, 37 (3) : 773-785.

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Rice Galaxy: An open resource for plant science. Juanillas Venice, Dereeper Alexis, Beaume Nicolas, Droc Gaëtan, Dizon Joshua, Mendoza John Robert, Perdon Jon Peter, Mansueto Locedie, Triplett Lindsay R., Lang Jillian M., Zhou Gabriel, Ratharanjan Kunalan, Plale Beth, Haga Jason, Leach Jan E., Ruiz Manuel, Thomson Michael J., Alexandrov Nickolai, Larmande Pierre, Kretzschmar Tobias, Mauleon Ramil P.. 2019. GigaScience, 8 (5) : 1-14.

Seed comparative genomics in three coffee species identify desiccation tolerance mechanisms in intermediate seeds. Stavrinides Anna K., Dussert Stéphane, Combes Marie-Christine, Fock-Bastide Isabelle, Severac Dany, Minier Jérôme, Bastos-Siqueira Aldecinei, Demolombe Vincent, Hem Sonia, Lashermes Philippe, Joët Thierry. 2019. Journal of Experimental Botany, 71 (4) : 1418-1433.

Transcriptome data from three endemic Myrtaceae species from New Caledonia displaying contrasting responses to myrtle rust (Austropuccinia psidii). Soewarto Julia, Hamelin Chantal, Bocs Stéphanie, Mournet Pierre, Vignes Hélène, Berger Angélique, Armero Villanueva Alix Augusto, Martin Guillaume, Dereeper Alexis, Sarah Gautier, Carriconde Fabian, Maggia Laurent. 2019. Data in Brief, 22 : 794-811.

The Wolbachia mobilome in Culex pipiens includes a putative plasmid. Reveillaud Julie, Bordenstein Sarah R., Cruaud Corinne, Shaiber Alon, Esen Özcan C., Weill Mylène, Makoundou Patrick, Lolans Karen, Watson Andrea R., Rakotoarivony Ignace, Bordenstein Seth R., Eren A. Murat. 2019. Nature Communications, 10 (1):1051, 11 p.

The bracteatus pineapple genome and domestication of clonally propagated crops. Chen Li-Yu, VanBuren Robert, Paris Margot, Zhou Hongye, Zhang Xingtan, Wai Ching Man, Yan Hansong, Chen Shuai, Alonge Michael, Ramakrishnan Srividya, Liao Zhenyang, Liu Juan, Lin Jishan, Yue Jingjing, Fatima Mahpara, Lin Zhicong, Zhang Jisen, Huang Lixian, Wang Hao, Hwa Teh-Yang, Kao Shu-Min, Choi Jae Young, Sharma Anupma, Song Jian, Wang Lulu, Yim Won C., Cushman John C., Paull Robert E., Matsumoto Tracie, Qin Yuan, Wu Qingsong, Wang Jianping, Yu Qingyi, Wu Jun, Zhang Shaoling, Boches Peter, Tung Chih-Wei, Wang Ming-Li, Coppens D'Eeckenbrugge Geo, Sanewski Garth M., Purugganan Michael D., Schatz Michael C., Bennetzen Jeffrey L., Lexer Christian, Ming Ray. 2019. Nature Genetics, 51 (10) : 1549-1558.

A multicellular way of life for a multipartite virus. Sicard Anne, Pirolles Elodie, Gallet Romain, Vernerey Marie-Stéphanie, Yvon Michel, Urbino Cica, Peterschmitt Michel, Gutierrez Serafin, Michalakis Yannis, Blanc Stéphane. 2019. eLife, 8:e43599, 14 p.

A new prevalent densovirus discovered in Acari. Insight from metagenomics in viral communities associated with two-spotted mite (Tetranychus urticae) populations. François Sarah, Mutuel Doriane, Duncan Alison B., Rodrigues Leonor R., Danzelle Celya, Lefevre Sophie, Santos Inês, Frayssinet Marie, Fernandez Emmanuel, Filloux Denis, Roumagnac Philippe, Froissart Rémy, Ogliastro Mylène. 2019. Viruses, 11 (3):233, 24 p.

Autosomal and mitochondrial adaptation following admixture: a case study on the honeybees of Reunion Island. Wragg David, Techer Maéva Angélique, Canale-Tabet Kamila, Basso Benjamin, Bidanel Jean-Pierre, Labarthe Emmanuelle, Bouchez Olivier, Le Conte Yves, Clémencet Johanna, Delatte Hélène, Vignal Alain. 2018. Genome Biology and Evolution, 10 (1) : 220-238.

CRISPR/Cas9-mediated efficient targeted mutagenesis has the potential to accelerate the domestication of Coffea canephora. Breitler Jean-Christophe, Dechamp Eveline, Campa Claudine, Rodrigues Leonardo Augusto Zebral, Guyot Romain, Marraccini Pierre, Etienne Hervé. 2018. Plant Cell, Tissue and Organ Culture, 134 (3) : 383-394.

Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps. Belser Caroline, Istace Benjamin, Denis Erwan, Dubarry Marion, Baurens Franc-Christophe, Falentin Cyril, Genete Mathieu, Berrabah Wahiba, Chèvre Anne-Marie, Delourme Régine, Deniot Gwenaëlle, Denoeud France, Duffé Philippe, Engelen Stefan, Lemainque Arnaud, Manzanares-Dauleux Maria J., Martin Guillaume, Morice Jérôme, Noël Benjamin, Vekemans Xavier, D'Hont Angélique, Rousseau-Gueutin Mathieu, Barbe Valérie, Cruaud Corinne, Wincker Patrick, Aury Jean-Marc. 2018. Nature Plants, 4 (11) : 879-887.

Complete genome sequence of a lineage II Peste des Petits Ruminants virus from Sierra Leone. Dundon William G., Adombi Caroline Mélanie, Kanu Saidu, Loitsch Angelika, Cattoli Giovanni, Diallo Adama. 2018. Genome Announcements, 6 (1):e01417-17, 2 p.

Genome-wide association studies of 39 seed yield-related traits in sesame (Sesamum indicum L.). Zhou Rong, Dossa Komivi, Li Donghua, Yu Jingyin, You Jun, Wei Xin, Zhang Xiurong. 2018. International Journal of Molecular Sciences, 19 (9), n.spéc. Plant Genetics and Molecular Breeding:2794, 18 p.

Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L. Sant'ana Gustavo Cesar, Pereira Luiz Filipe P., Pot David, Ivamoto Suzana Tiemi, Domingues Douglas S., Ferreira Rafaelle V., Pagiatto Natalia Ferrarezi, da Silva Bruna S.R., Nogueira Lívia M., Kitzberger Cíntia S.G., Scholz Maria Brigida dos Santos, de Oliveira Fernanda F., Sera Gustavo, Padilha Lilian, Labouisse Jean-Pierre, Guyot Romain, Charmetant Pierre, Leroy Thierry. 2018. Scientific Reports, 8:465, 12 p.

Genomics of the origin and evolution of Citrus. Wu Guohong Albert, Terol Javier F., Ibáñez Victoria, López-García Antonio, Pérez-Román Estela, Borredá Carles, Domingo Concha, Tadeo Francisco, Carbonell-Caballero Jose, Alonso Roberto, Curk Franck, Du Dongliang, Ollitrault Patrick, Roose Mikeal L., Dopazo Joaquin, Gmitter Frederick G., Rokhsar Daniel S., Talon Manuel. 2018. Nature, 554 (7692) : 311-136.

Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean. Chen Nicolas W.G., Serres-Giardi Laurana, Ruh Mylène, Briand Martial, Bonneau Sophie, Darrasse Armelle, Barbe Valérie, Gagnevin Lionel, Koebnik Ralf, Jacques Marie Agnès. 2018. BMC Genomics, 19:606, 20 p.

Nanovirus‐alphasatellite complex identi ed in Vicia cracca in the Rhône delta region of France. Gallet Romain, Kraberger Simona, Filloux Denis, Galzi Serge, Fontes Hugo, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2018. Archives of Virology, 163 (3) : 695-700.

Nonhuman primates across sub-Saharan Africa are infected with the yaws bacterium Treponema pallidum subsp. pertenue. Knauf Sascha, Gogarten Jan F., Schuenemann Verena J., De Nys Hélène, Düx Ariane, Strouhal Michal, Mikalová Lenka, Bos Kirsten I., Armstrong Roy, Batamuzi Emmanuel K., Chuma Idrissa S., Davoust Bernard, Diatta Georges, Fyumagwa Robert, Kazwala Reuben R., Keyyu Julius, Lejora Inyasi A. V., Levasseur Anthony, Liu Hsi, Mayhew Michael A., Mediannikov Oleg, Raoult Didier, Wittig Roman M., Roos Christian, Leendertz Fabian Hubertus, Smajs David, Nieselt Kay, Krause Johannes, Calvignac-Spencer Sébastien. 2018. Emerging Microbes and Infections, 7 (1) : 1-4.

Oak genome reveals facets of long lifespan. Plomion Christophe, Aury Jean-Marc, Amselem Joelle, Leroy Thibault, Murat Florent, Duplessis Sébastien, Faye Sébastien, Francillonne Nicolas, Labadie Karine, Le Provost Grégoire, Lesur Isabelle, Bartholome Jérôme, Faivre-Rampant Odile, Kohler Annegret, Leplé Jean-Charles, Chantret Nathalie, Chen Jun, Diévart Anne, et al.. 2018. Nature Plants, 4 : 440-452.

Présence sur l'île de La Réunion de deux espèces de Punaises prédatrices potentiellement utilisables pour la lutte biologique : Orius naivashae et Cyrtopeltis callosus (Hemiptera, Anthocoridae et Miridae). Streito Jean-Claude, Fontaine Olivier, Atiama Morguen, Genson Gwenaëlle, Pierre Eric, Sadeyen Joëlle, Frago Enric, Nibouche Samuel. 2018. Bulletin de la Société Entomologique de France, 123 (1) : 29-42.

Response to early drought stress and identification of QTLs controlling biomass production under drought in pearl millet. Debieu Maryline, Sine Bassirou, Passot Sixtine, Grondin Alexandre, Akata Eyanawa, Gangashetty Prakash, Vadez Vincent, Gantet Pascal, Foncéka Daniel, Cournac Laurent, Hash Charles Thomas, Kane Ndjido Ardo, Vigouroux Yves, Laplaze Laurent. 2018. PloS One, 13 (10):e0201635, 19 p.

Ten broad spectrum resistances to downy mildew physically mapped on the sunflower genome. Pecrix Yann, Penouilh-Suzette Charlotte, Muños Stéphane, Vear Felicity, Godiard Laurence. 2018. Frontiers in Plant Science, 9:1780, 15 p.

Three new genome assemblies support a rapid radiation in Musa acuminata (wild banana). Rouard Mathieu, Droc Gaëtan, Martin Guillaume, Sardos Julie, Hueber Yann, Guignon Valentin, Cenci Alberto, Geigle B., Hibbins M.S., Yahiaoui Nabila, Baurens Franc-Christophe, Berry Vinvent, Hahn M.W., D'Hont Angélique, Roux Nicolas. 2018. Genome Biology and Evolution, 10 (12) : 3129-3140.

Whole-genome landscape of Medicago truncatula symbiotic genes. Pecrix Yann, Staton S. Evan, Sallet Erika, Lelandais-Brière Christine, Moreau Sandra, Carrère Sébastien, Blein Thomas, Jardinaud Marie-Françoise, Latrasse David, Zouine Mohamed, Zahm Margot, Kreplak Jonathan, Mayjonade Baptiste, Satge Carine, Perez Magali, Cauet Stéphane, Marande William, Chantry-Darmon Céline, Lopez-Roques Céline, Bouchez Olivier, Bérard Aurélie, Debellé Frédéric, Muños Stéphane, Bendahmane Abdelhafid, Berges Hélène, Niebel Andreas, Buitink Julia, Frugier Florian, Benhamed Moussa, Crespi Martin, Gouzy Jérôme, Gamas Pascal. 2018. Nature Plants, 4 (12) : 1017-1025.

Whole-genome prediction of reaction norms to environmental stress in bread wheat (Triticum aestivum L.) by genomic random regression. Ly Delphine, Huet Sylvie, Gauffreteau Arnaud, Rincent Renaud, Touzy Gaëtan, Mini Agathe, Jannink Jean-Luc, Cormier Fabien, Paux Etienne, Lafarge Stéphane, Le Gouis Jacques, Charmet Gilles. 2018. Field Crops Research, 216 : 32-41.

A mosaic monoploid reference sequence for the highly complex genome of sugarcane. Garsmeur Olivier, Droc Gaëtan, Antonise Rudie, Grimwood Jane, Potier Bernard, Aitken Karen S., Jenkins Jerry, Martin Guillaume, Charron Carine, Hervouet Catherine, Costet Laurent, Yahiaoui Nabila, Healey Adam, Sims David, Cherukuri Yesesri, Sreedasyam Avinash, Kilian Andrzej, Chan Agnes P., Van Sluys Marie-Anne, Swaminathan Kankshita, Town Christopher, Berges Hélène, Simmons Blake, Glaszmann Jean-Christophe, Van der Vossen Edwin, Henry Robert, Schmutz Jeremy, D'Hont Angélique. 2018. Nature Communications, 9:2638, 10 p.

Comparative genomics of the zoonotic pathogen Ehrlichia chaffeensis reveals candidate type IV effectors and putative host cell targets. Noroy Christophe, Meyer Damien. 2017. Frontiers in Cellular and Infection Microbiology, 6 (204), 15 p.

Comparison of the efficiency of different newcastle disease virus reverse genetics systems. Liu Haijin, Servan de Almeida Renata, Gil Patricia, Albina Emmanuel. 2017. Journal of Virological Methods, 249 : 111-116.

Complete genome sequences of six copper-resistant Xanthomonas citri pv. citri strains causing Asiatic citrus canker, obtained using long-read technology. Richard Damien, Boyer Claudine, Vernière Christian, Canteros B.I., Lefeuvre Pierre, Pruvost Olivier. 2017. Genome Announcements, 5 (12):e00010-17, 2 p.

Complete genome sequences of six copper-resistant Xanthomonas strains causing bacterial spot of solaneous plants, Bblonging to X. gardneri, X. euvesicatoria, and X. vesicatoria, using long-read technology. Richard Damien, Boyer Claudine, Lefeuvre Pierre, Canteros B.I., Beni-Madhu Shyam, Portier Perrine, Pruvost Olivier. 2017. Genome Announcements, 5 (8):e01693-16, 2 p.

Development of highly informative genome-wide single sequence repeat markers for breeding applications in sesame and construction of a web resource: SisatBase. Dossa Komivi, Yu Jingyin, Liao Boshou, Cissé Ndiaga, Zhang Xiurong. 2017. Frontiers in Plant Science, 8:1470, 10 p.

Diversité et origine génétique des espèces de la sous famille des Aurantioideae et décryptage des structures interspécifiques des génomes des agrumes modernes. Oueslati Bahri Amel. 2017. Tunis : Université de Tunis El Manar, 200 p. Thèse de doctorat : Biologie. Génétique et biologie moléculaire : Université de Tunis El Manar

Dynamic transcriptome landscape of sesame (Sesamum indicum L.) under progressive drought and after rewatering. Dossa Komivi, Li Donghua, Wang Linhai, Zheng Xiaomin, Yu Jingyin, Wei Xin, Fonceka Daniel, Diouf Diaga, Liao Boshou, Cissé Ndiaga, Zhang Xiurong. 2017. Genomics Data, 11 : 122-124.

Evolution of the banana genome (Musa acuminata) is impacted by large chromosomal translocations. Martin Guillaume, Carreel Françoise, Coriton Olivier, Hervouet Catherine, Cardi Céline, Derouault Paco, Roques Danièle, Salmon Frédéric, Rouard Mathieu, Sardos Julie, Labadie Karine, Baurens Franc-Christophe, D'Hont Angélique. 2017. Molecular Biology and Evolution, 34 (9), 28 p.

Evolutionary forces affecting synonymous variations in plant genomes. Clément Yves, Sarah Gautier, Holtz Yan, Homa Félix, Pointet Stéphanie, Contreras Sandy, Nabholz Benoit, Sabot François, Sauné Laure, Ardisson Morgane, Bacilieri Roberto, Besnard Guillaume, Berger Angélique, Cardi Céline, De Bellis Fabien, Fouet Olivier, Jourda Cyril, Khadari Bouchaib, Lanaud Claire, Leroy Thierry, Pot David, Sauvage Christopher, Scarcelli Nora, Tregear James, Vigouroux Yves, Yahiaoui Nabila, Ruiz Manuel, Santoni Sylvain, Labouisse Jean-Pierre, Pham Jean Louis, David Jacques, Glemin Sylvain. 2017. PLoS Genetics, 13 (5):e1006799, 28 p.

Genome sequences of a capulavirus infecting Plantago lanceolata in the Aland archipelago of Finland. Susi Hanna, Laine Anna-Liisa, Filloux Denis, Kraberger Simona, Farkas Kata, Bernardo Pauline, Frilander Mikko J., Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2017. Archives of Virology, 162 (7) : 2041-2045.

Genome sequencing of the sweetpotato whitefly Bemisia tabaci MED/Q. Xie Wen, Chen Chunhai, Yang Zezhong, Guo Litao, Yang Xin, Wang Dan, Chen Ming, Huang Jinqun, Wen Yanan, Zeng Yang, Liu Yating, Xia Jixing, Tian Lixia, Cui Hongying, Wu Qingjun, Wang Shaoli, Wu Baoyun, Li Xianchiun, Tan Xinqiu, Ghanim Murad, Qiu Baoli, Pan Huipeng, Chu Dong, Delatte Hélène, Maruthi M.N., Ge Feng, Zhou Xueping, Wang Xiaowei, Wan Fang-Hao, Du Yuzhou, Luo Chen, Yan Fengming, Preisser Evan L., Jiao Xiaoguo, Coates Brad S., Zhao Jinyang, Gao Qiang, Xia Jinquan, Yin Ye, Liu Yong, Brown Judith, Zhou Xuguo-Joe, Zhang Youjun. 2017. GigaScience, 6 (5), 7 p.

Genome size, cytogenetic data and transferability of EST-SSRs markers in wild and cultivated species of the genus Theobroma L. (Byttnerioideae, Malvaceae). da Silva Rangeline Azevedo, Souza Gustavo, Lemos Lívia Santos Lima, Lopes Uilson Vanderlei, Patrocinio Nara Geórgia Ribeiro Braz, Alves Rafael Moyses, Marcellino Lucilia Helena, Clément Didier, Micheli Fabienne, Gramacho Karina Peres. 2017. PloS One, 12 (2):e0170799, 15 p.

Genome-wide association mapping for root cone angle in rice. Bettembourg Mathilde, Dardou Audrey, Audebert Alain, Thomas Emilie, Frouin Julien, Guiderdoni Emmanuel, Ahmadi Nourollah, Perin Christophe, Diévart Anne, Courtois Brigitte. 2017. Rice, 10:45, 17 p.

Genome-wide identification and characterization of cacao WRKY transcription factors and analysis of their expression in response to witches' broom disease. Silva Monteiro de Almeida Dayanne, Do Amaral Daniel Oliveira Jordão, Del-Bem Luiz-Eduardo, Bronze dos Santos Emily, Santana Silva Raner José, Peres Gramacho Karina, Vincentz Michel, Micheli Fabienne. 2017. PloS One, 12 (10):e0187346, 23 p.

Genotypic, size and morphological diversity of virioplankton in a deep oligomesotrophic freshwater lake (Lac Pavin, France). Colombet Jonathan, Robin Agnès, Sime-Ngando Télesphore. 2017. Journal of Environmental Sciences, 53 : 48-59.

ICTV virus taxonomy profile: Geminiviridae. Zerbini F. Murilo, Briddon Rob W., Idris Ali, Martin Darren Patrick, Moriones Enrique, Navas-Castillo Jesús, Rivera-Bustamante Rafael, Roumagnac Philippe, Varsani Arvind. 2017. Journal of General Virology, 98 : 131-133.

Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut. Armero Villanueva Alix Augusto, Baudouin Luc, Bocs Stéphanie, This Dominique. 2017. PloS One, 12 (3):e0173300, 22 p.

Las biotecnologías como impulsadoras de la producción de aceite de palma sostenible. Rival Alain. 2017. Palmas, 37, n.spéc. Tomo 1 : 175-182.

Le génome du cacaoyer : du décodage de sa séquence jusqu'à l'étude de gènes impliqués dans des caractères agronomiques d'intérêt. Argout Xavier. 2017. Montpellier : Montpellier SupAgro, 238 p. Thèse de doctorat : Biologie, interactions, diversité adaptative des plantes : Montpellier SupAgro

MGIS: Managing banana (Musa spp.) genetic resources information and high-throughput genotyping data. Ruas Max, Guignon Valentin, Sempere Guilhem, Sardos Julie, Hueber Yann, Duvergey H., Andrieu A., Chase Rachel, Jenny Christophe, Hazekamp T., Irish B., Jelali K., Adeka J., Ayala-Silva T., Chao C.P., Daniells J., Dowiya B., Effa Effa B., Gueco L., Herradura L., Ibobondji L., Kempenaers E., Kilangi J., Muhangi S., Ngo Xuan P., Paofa Janet, Pavis Claude, Thiemele D., Tossou Christophe, Sandoval Jorge A., Sutanto A., Vangu Paka G., Yi G., Van Den Houwe Ines, Roux Nicolas, Rouard Mathieu. 2017. Database, 2017:bax046, 12 p.

Molecular genetics and breeding. Soh Aik Chin, Mayes Sean, Roberts Jeremy, Zaki Noorhariza Mohd, Madon Maria, Schwarzacher Trude, Heslop-Harrison Pat, Ithnin Maizura Bint, Din Amiruddin Mohd, Ramli Umi Salamah, Othman Abrizah, Zulkifli Yaakub, Low Eng Ti Leslie, Ong-Abdullah Meilina, Singh Rajinder, Teh Chee Keng, Kwong Qi Bin, Ong Ail Ling, Mohamed Mohaimi, Apparow Sukganah, Chew Fook Tim, Appleton David Ross, Kulaveerasingam Harikrishna, Teh Huey Fang, Mebus Katharina, Neoh Bee Keat, Ooi Tony Eng Keong, Wong Yick Ching, Cros David. 2017. In : Oil palm breeding : genetics and genomics. Soh Aik Chin (ed.), Mayes Sean (ed.) , Roberts Jeremy A. (ed.). Boca Raton : CRC Press, 225-281. ISBN 978-1-4987-1544-7

Morphological characterization in the genus Passiflora L.: An approach to understanding its complex variability. Ocampo Perez John Albeiro, Coppens D'Eeckenbrugge Geo. 2017. Plant Systematics and Evolution, 303 (4) : 531-558.

New insights on leucine-rich repeats receptor-like kinase orthologous relationships in angiosperms. Dufayard Jean François, Bettembourg Mathilde, Fischer Iris, Droc Gaëtan, Guiderdoni Emmanuel, Périn Christophe, Chantret Nathalie, Diévart Anne. 2017. Frontiers in Plant Science, 8:381, 18 p.

New strains of chickpea chlorotic dwarf virus discovered on diseased papaya and tomato plants in Burkina Faso. Ouattara Alassane, Tiendrebeogo Fidèle, Lefeuvre Pierre, Hoareau Murielle, Claverie Sohini, Traoré Edgar Valentin, Barro Nicolas, Traoré Oumar, Varsani Arvind, Lett Jean-Michel. 2017. Archives of Virology, 162 (6) : 1791-1794.

Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and Réunion. Boukari Wardatou, Alcala-Briseño Ricardo I., Kraberger Simona, Fernandez Emmanuel, Filloux Denis, Daugrois Jean-Heinrich, Comstock Jack C., Lett Jean-Michel, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe, Polston Jane E., Rott Philippe. 2017. Virology Journal, 14:146, 8 p.

Phytophthora megakarya and Phytophthora palmivora, closely related causal agents of cacao black pod rot, underwent increases in genome sizes and gene numbers by different mechanisms. Ali Shahin, Shao Jonathan, Lary David J., Kronmiller Brent A., Shen Danyu, Strem Mary, Amoako-Attah Ishmael, Yaw Akrofi Andrew, Begoude Dider, Ten Hoopen Gerben Martijn, Coulibaly Klotioloma, Kébé Boubacar Ismaël, Melnick Rachel L., Guiltinan Mark J., Tyler Brett, Meinhardt Lyndel W., Bailey Bryan. 2017. Genome Biology and Evolution, 9 (3) : 536-557.

Post genomics era for orchid research. Tsai Wen-Chieh, Diévart Anne, Hsu Chia-Chi, Hsiao Yu-Yun, Chiou Shang-Yi, Huang Hsin, Chen Hong-Hwa. 2017. Botanical Studies, 58:e61, 22 p.

Targeted promoter editing for rice resistance to Xanthomonas oryzae pv. oryzae reveals differential activities for SWEET14-inducing TAL effectors. Blanvillain-Baufumé Servane, Reschke Maik, Solé Montserrat, Auguy Florence, Doucoure Hinda, Szurek Boris, Meynard Donaldo, Portefaix Murielle, Cunnac Sébastien, Guiderdoni Emmanuel, Boch Jen, Koebnik Ralf. 2017. Plant Biotechnology Journal, 15 (3) : 306-317.

Tomato leaf curl Burkina Faso virus: A novel tomato-infecting monopartite begomovirus from Burkina Faso. Ouattara Alassane, Tiendrebeogo Fidèle, Lefeuvre Pierre, Claverie Sohini, Hoareau Murielle, Traoré Edgar Valentin, Barro Nicolas, Traoré Oumar, Lett Jean-Michel. 2017. Archives of Virology, 162 (5) : 1427-1429.

Torix group Rickettsia are widespread in Culicoides biting midges (Diptera: Ceratopogonidae), reach high frequency and carry unique genomic features. Pilgrim Jack, Ander Mats, Garros Claire, Baylis Matthew, Hurst Gregory D.D., Siozos Stefanos. 2017. Environmental Microbiology, 19 (10), n.spéc. Pathogen and Drug Resistance Ecology : 4238-4255.

Two novel Alphaflexiviridae members revealed by deep sequencing of the Vanilla (Orchidaceae) virome. Grisoni Michel, Marais Armelle, Filloux Denis, Saison Anne, Faure Chantal, Julian Charlotte, Theil Sébastien, Contreras Sandy, Teycheney Pierre-Yves, Roumagnac Philippe, Candresse Thierry. 2017. Archives of Virology, 162 (12) : 3855-3861.

Two-plasmid system to increase the rescue efficiency of paramyxoviruses by reverse genetics: The example of rescuing Newcastle Disease Virus. Liu Haijin, Albina Emmanuel, Gil Patricia, Minet Cécile, Servan de Almeida Renata. 2017. Virology, 509 : 42-51.

The cacao Criollo genome v2.0: An improved version of the genome for genetic and functional genomic studies. Argout Xavier, Martin Guillaume, Droc Gaëtan, Fouet Olivier, Labadie Karine, Rivals Eric, Aury Jean-Marc, Lanaud Claire. 2017. BMC Genomics, 18:730, 9 p.

The evolutionary fate of the chloroplast and nuclear rps16 genes as revealed through the sequencing and comparative analyses of four novel legume chloroplast genomes from Lupinus. Keller J., Rousseau-Gueutin Mathieu, Martin Guillaume, Morice Jérôme, Boutte Julien, Coissac E., Ourari M., Ainouche Malika Lily, Salmon Armel, Cabello-Hurtado F., Ainouche Abdelkader. 2017. DNA Research, 24 (4) : 343-358.

The genome draft of coconut (Cocos nucifera). Xiao Yong, Xu Pengwei, Fan Haikuo, Baudouin Luc, Xia Wei, Bocs Stéphanie, Xu Junyang, Li Qiong, Guo Anping, Zhou Lixia, Li Jing, Wu Yi, Ma Zilong, Armero Villanueva Alix Augusto, Issali Auguste Emmanuel, Liu Na, Peng Ming, Yang Yaodong. 2017. GigaScience, 6 (11), 11 p.

A la découverte des agents pathogènes et microorganismes des tiques de la Caraïbe par séquençage de nouvelle génération et PCR microfluidique en temps réel. Gondard Mathilde. 2017. Champs-sur-Marne : Université Paris-Est, 286 p. Thèse de doctorat : Sciences de la vie et de la santé : Université Paris-Est

Association mapping for Phytophthora pod rot resistance in a cacao (Theobroma cacao L.) population grown in farmers' field. Efombagn Mousseni Ives Bruno, Sounigo Olivier, Courtois Brigitte, Fouet Olivier, Jeanneau Mélanie, Lemainque Arnaud, Pavek Sylvana, Lanaud Claire. 2016. International Journal of Agriculture and Biosciences, 5 (6) : 329-336.

Association mapping of resistance to rice blast in upland field conditions. Raboin Louis-Marie, Ballini Elsa, Tharreau Didier, Ramanantsoanirina Alain, Frouin Julien, Courtois Brigitte, Ahmadi Nourollah. 2016. Rice, 9 (59), 12 p.

Cacao Swollen Shoot Virus (CSSV): History, Biology, and Genome. Muller Emmanuelle. 2016. In : Cacao diseases. A history of old enemies and new encounters. Bryan A. Bailey (ed.), Lyndel W. Meinhardt (ed.). Cham : Springer International Publishing, 337-358. ISBN 978-3-319-24787-8

Combating a global threat to a clonal crop: Banana black sigatoka pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) genomes reveal clues for disease control. Arango Isaza Rafael E., Diaz-Trujillo Caucasella, Dhillon Braham, Aerts Andrea, Carlier Jean, Crane Charles F., de Jong Tristan V., De Vries Ineke, Dietrich Robert, Farmer Andrew, Fortes Fereira Claudia, Garcia Suzana, Guzman Mauricio, Hamelin Richard C., Lindquist Erika, Mehrabi Rahim, Quiros Madrigal Olman, Schmutz Jeremy, Shapiro Harris, Reynolds Elizabeth, Scalliet Gabriel, Souza Manoel, Stergiopoulos Ioannis, Van der Lee Theo A.J., De Wit Pierre J. G. M., Zapater Marie-Françoise, Zwiers Lute-Harm, Grigoriev Igor, Goodwin Stephen B., Kema Gert H.J.. 2016. PLoS Genetics, 12 (8):e1005876, 36 p.

Complete genome sequence of a copper-resistant bacterium from the citrus phyllosphere, Stenotrophomonas sp. strain LM091, obtained using long-read technology. Richard Damien, Boyer Claudine, Lefeuvre Pierre, Pruvost Olivier. 2016. Genome Announcements, 4 (6):e01327-16, 2 p.

Development of single nucleotide polymorphism markers in the large and complex rubber tree genome using next-generation sequence data. Moura De Souza Livia, Toledo-Silva Guilherme, Cardoso-Silva Claudio Benicio, Da Silva Carla Cristina, De Araujo Andreotti Isabella, Oliveira Conson André Ricardo, Mantello Camilia Campos, Le Guen Vincent, Pereira de Souza Anete. 2016. Molecular Breeding, 36 (8):115, 10 p.

Discovery of parvovirus-related sequences in an unexpected broad range of animals. François Sarah, Filloux Denis, Roumagnac Philippe, Bigot D., Gayral Philippe, Martin Darren Patrick, Froissart Rémi, Ogliastro Mylène. 2016. Scientific Reports, 6 (30880), 13 p.

Draft genome sequences of nine strains of Ralstonia solanacearum differing in virulence to eggplant (Solanum melongena). Guinard Jérémy, Vinatzer Boris A., Poussier Stéphane, Lefeuvre Pierre, Wicker Emmanuel. 2016. Genome Announcements, 4 (1):e01415, 15 p.

Emergence of lineage IV peste des petits ruminants virus in Ethiopia: Complete genome sequence of an Ethiopian isolate 2010. Muniraju Murali, Mahapatra Mana, Ayelet Gelagay, Babu A., Olivier G., Munir M., Libeau Geneviève, Batten Carrie, Banyard Ashley C., Parida Satya. 2016. Transboundary and Emerging Diseases, 63 (4) : 435-442.

Evolutionary dynamics of the Leucine-Rich Repeats Receptor-Like Kinase (LRR-RLK) subfamily in angiosperms. Fischer Iris, Diévart Anne, Droc Gaëtan, Dufayard Jean François, Chantret Nathalie. 2016. Plant Physiology, 170 (3) : 1595-1610.

First report and characterization of peste des petits ruminants virus in Liberia, West Africa. Boussini Hiver, Chitsungo Etherl, Bodjo Sanne Charles, Diakité Adama, Nwankpa Nick, Elsawalhy Ahmed, Anderson Joseph R.N., Diallo Adama, Dundon William G.. 2016. Tropical Animal Health and Production, 48 (7) : 1503-1507.

Gene coexpression network analysis of oil biosynthesis in an interspecific backcross of oil palm. Guérin Chloé, Joët Thierry, Serret Julien, Lashermes Philippe, Vaissayre Virginie, Agbessi Mawussé D.T., Beulé Thierry, Severac Dany, Amblard Philippe, Tregear James, Durand-Gasselin Tristan, Morcillo Fabienne, Dussert Stéphane. 2016. Plant Journal, 87 (5) : 423-441.

Genome-wide association mapping for root traits in a panel of rice accessions from Vietnam. Phung Nhung Thi Phuong, Mai Chung Duc, Hoang Giang Thi, Truong Hue Thi Minh, Lavarenne Jeremy, Gonin Mathieu, Nguyen Khanh L., Ha Thuy Thi, Do Vinh Nang, Gantet Pascal, Courtois Brigitte. 2016. BMC Plant Biology, 16 (1), 19 p.

Genome-wide investigation of hsf genes in sesame reveals their segmental duplication expansion and their active role in drought stress response. Dossa Komivi, Diouf Diaga, Cissé Ndiaga. 2016. Frontiers in Plant Science, 7:1522, 16 p.

Genome-wide variation in recombination rate in Eucalyptus. Gion Jean-Marc, Hudson Corey J., Lesur Isabelle, Vaillancourt René E., Potts Brad M., Freeman Jules S.. 2016. BMC Genomics, 17 (590), 12 p.

Genomic and proteomic evidence supporting the division of the plant pathogen Ralstonia solanacearum into three species. Prior Philippe, Ailloud Florent, Dalsing Beth, Remenant Benoit, Sanchez Borja, Allen Caitilyn. 2016. BMC Genomics, 17 (1), 11 p.

Gigwa—Genotype investigator for genome-wide analyses. Sempere Guilhem, Philippe Florian, Dereeper Alexis, Ruiz Manuel, Sarah Gautier, Larmande Pierre. 2016. GigaScience, 5 (25), 9 p.

Healthy tropical plants to mitigate the impact of climate change - as exemplified in coffee. Bertrand Benoît, Marraccini Pierre, Villain Luc, Breitler Jean-Christophe, Etienne Hervé. 2016. In : Climate change and agriculture worldwide. Torquebiau Emmanuel (ed.), Manley David (trad.), Cowan Paul (trad.). Heidelberg : Springer, 83-95. ISBN 978-94-017-7460-4

The Hevea brasiliensis XIP aquaporin subfamily: Genomic, structural and functional characterizations with relevance to intensive latex harvesting. Lopez David, Ben Amira Maroua, Brown Daniel, Muries Beatriz, Brunel-Michac Nicole, Bourgerie Sylvain, Porcheron Benoit, Lemoine Remi, Chrestin Hervé, Mollison Ewan, Di Cola Alessandra, Frigerio Lorenzo, Julien Jean-Louis, Gousset-Dupont Aurélie, Fumanal Boris, Label Philippe, Pujade-Renaud Valérie, Auguin Daniel, Venisse Jean-Stéphane. 2016. Plant Molecular Biology, 91 (4-5) : 375-396.

High-quality draft genome sequences of two Xanthomonas pathotype strains infecting aroid plants. Robène Isabelle, Bolot Stéphanie, Pruvost Olivier, Arlat Mathieu, Noel Laurent D., Carrère Sébastien, Jacques Marie Agnès, Koebnik Ralf, Gagnevin Lionel. 2016. Genome Announcements, 4 (5):e00902-16, 2 p.

Improvement of the banana Musa acuminata reference sequence using NGS data and semi-automated bioinformatics methods. Martin Guillaume, Baurens Franc-Christophe, Droc Gaëtan, Rouard Mathieu, Cenci Alberto, Kilian Andrzej, Hastie Alex, Dolezelova M., Aury Jean-Marc, Alberti Adriana, Carreel Françoise, D'Hont Angélique. 2016. BMC Genomics, 17 (243), 12 p.

Inferences from tip-calibrated phylogenies: A review and a practical guide. Rieux Adrien, Balloux François. 2016. Molecular Ecology, 25 (9) : 1911-1924.

La diversité génétique des plantes cultivées à l'heure de l'informatique génétique à haut débit: génomique comparative de la domestication. David Jacques, Glemin Sylvain, Sarah Gautier, Nabholz Benoit, Sabot François, Holtz Yan, Homa Félix, Pointet Stéphanie, Contreras Sandy, Sauné Laure, Ardisson Morgane, Bacilieri Roberto, Khadari Bouchaib, Lanaud Claire, Pot David, Sauvage Christopher, Scarcelli Nora, Tregear James, Vigouroux Yves, Yahiaoui Nabila, Ruiz Manuel, Santoni Sylvain, Labouisse Jean-Pierre, Pham Jean Louis. 2016. Le Sélectionneur Français (67) : 3-13.

New development and validation of 50 SSR markers in breadfruit (Artocarpus altilis, Moraceae) by next-generation sequencing. De Bellis Fabien, Malapa Roger, Kagy Valérie, Lebegin Stéphane, Billot Claire, Labouisse Jean-Pierre. 2016. Applications in Plant Sciences, 4 (8):e1600021, 7 p.

Ongoing geographical spread of Tomato yellow leaf curl virus. Mabvakure Batsirai, Martin Darren Patrick, Kraberger Simona, Cloete Leendert, van Brunschot Sharon, Geering Andrew D., Thomas John, Bananej Kaveh, Lett Jean-Michel, Lefeuvre Pierre, Varsani Arvind, Harkins Gordon William. 2016. Virology, 498 : 257-264.

Phylogenetic origin of limes and lemons revealed by cytoplasmic and nuclear markers. Curk Franck, Ollitrault Frédérique, Garcia-Lor Andrés, Luro François, Navarro Luis, Ollitrault Patrick. 2016. Annals of Botany, 117 (4) : 565-583.

Placental genetic variations in circadian clock-related genes increase the risk of placental abruption. Qiu Chunfang, Gelaye Bizu, Denis Marie, Tadesse Mahlet G., Enquobahrie Daniel A., Ananth Cande V., Pacora Percy N., Salazar Manuel, Sanchez Sixto E., Williams Michelle A.. 2016. International Journal of Molecular Epidemiology and Genetics, 7 (1) : 32-40.

Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity. Bredeson Jessen V., Lyons Jessica B., Prochnik Simon, Wu Guohong Albert, Ha Cindy M., Edsinger-Gonzales Eric, Grimwood Jane, Schmutz Jeremy, Rabbi Ismail Y., Egesi Chiedozie, Nauluvula Poasa, Lebot Vincent, Ndunguru Joseph, Mkamilo Geoffrey, Bart Rebecca, Setter Tim, Gleadow Roslyn M., Kulakow Peter, Ferguson Morag E., Rounsley Steve, Rokhsar Daniel S.. 2016. Nature Biotechnology, 34 (5) : 562-570.

Shotgun sequencing of the mitochondrial genome of the Aldabra giant tortoise (Aldabrachelys gigantea). Besnard Guillaume, Thèves Catherine, Mata Xavier, Holota Hélène, Rakotozafy Lucien M.A., Pedrono Miguel. 2016. Mitochondrial DNA. Part A, 27 (6) : 4543-4544.

Subtelomere organization in the genome of the microsporidian Encephalitozoon cuniculi: Patterns of repeated sequences and physicochemical signatures. Dia Ndongo, Lavie Laurence, Faye Ngor, Méténier Guy, Yeramian Edouard, Duroure Christophe, Toguebaye B.S., Frutos Roger, Niang Mbayame N., Vivares Christian, Ben Mamoun Choukri, Cornillot Emmanuel. 2016. BMC Genomics, 17 (34), 20 p.

VSEARCH: a versatile open source tool for metagenomics. Rognes Torbjørn, Flouri Tomás, Nichols Ben, Quince Christopher, Mahe Frédéric. 2016. PeerJ, 4 (e2584), 22 p.

Whole genome expression and hydraulic architecture of diploid and doubled diploid citrus seedlings in intra and interspecific contexts. de Souza Joadson Dutra, Rodrigues Valérie, Barigah Têté Sévérien, Ollitrault Patrick, Da Silva Gesteira Abelmon, Morillon Raphaël. 2016. Citrus Research and Technology, 37 (2) : 206-210.

Whole-genome sequences of Xanthomonas euvesicatoria strains clarify taxonomy and reveal a stepwise erosion of type 3 effectors. Barak Jeri D., Vancheva Taca, Lefeuvre Pierre, Jones Jeffrey B., Timilsina Sujan, Minsavage Gerald V., Vallad Gary E., Koebnik Ralf. 2016. Frontiers in Plant Science, 7 (1805), 12 p.

A gene-based map of the Nod factor-independent Aeschynomene evenia sheds new light on the evolution of nodulation and legume genomes. Chaintreuil Clémence, Rivallan Ronan, Bertioli David J., Klopp Christophe, Gouzy Jérôme, Courtois Brigitte, Leleux Philippe, Martin Guillaume, Rami Jean-François, Gully Djamel, Parrinello Hugues, Severac Dany, Patrel Delphine, Fardoux Joël, Ribière William, Boursot Marc, Cartieaux Fabienne, Czernic Pierre, Ratet Pascal, Mournet Pierre, Giraud Eric, Arrighi Jean-François. 2016. DNA Research, 23 (4) : 365-376.

A genome-wide association study on the seedless phenotype in banana (Musa spp.) reveals the potential of a selected panel to detect candidate genes in a vegetatively propagated crop. Sardos Julie, Rouard Mathieu, Hueber Yann, Cenci Alberto, Hyma Katie E., Van Den Houwe Ines, Hribova Eva, Courtois Brigitte, Roux Nicolas. 2016. PloS One, 11 (5):e0154448, 25 p.

A physical map of important QTLs, functional markers and genes available for sesame breeding programs. Dossa Komivi. 2016. Physiology and Molecular Biology of Plants, 22 : 613-619.

The rubber tree genome reveals new insights into rubber production and species adaptation. Tang Chaorong, Yang Meng, Fang Yongjun, Luo Yingfeng, Gao Shenghan, Xiao Xiaohu, An Zewei, Zhou Binhui, Zhang Bing, Tan Xinyu, Yeang Hoong Yeet, Qin Yunxia, Yang Jianghua, Lin Qiang, Mei Hailiang, Montoro Pascal, Long Xiangyu, Qi Jiyan, Hua Yuwei, He Zilong, Sun Min, Li Wenjie, Zeng Xia, Cheng Han, Liu Ying, Yang Jin, Tian Weimin, Zhuang Nansheng, Zeng Rizhong, Li Dejun, He Peng, Li Zhe, Zou Zhi, Li Shuangli, Li Chenji, Wang Jixiang, Wei Dong, Lai Chao-Qiang, Luo Wei, Yu Jun, Hu Songnian, Huang Huasun. 2016. Nature Plants, 10 p.

The strange lifestyle of multipartite viruses. Sicard Anne, Michalakis Yannis, Gutiérrez Serafin, Blanc Stéphane. 2016. PLoS Pathogens, 12 (11):e1005819, 19 p.

A unified and comprehensible view of parametric and kernel methods for genomic prediction with application to rice. Jacquin Laval, Cao Tuong-Vi, Ahmadi Nourollah. 2016. Frontiers in Genetics, 7 (145), 16 p.

Alfalfa leaf curl virus: an aphid-transmitted geminivirus. Roumagnac Philippe, Granier Martine, Bernardo Pauline, Deshoux Maëlle, Ferdinand Romain, Galzi Serge, Fernandez Emmanuel, Julian Charlotte, Abt Isabelle, Filloux Denis, Mesleard François, Varsani Arvind, Blanc Stéphane, Martin Darren Patrick, Peterschmitt Michel. 2015. Journal of Virology, 89 (18) : 9683-9688.

Clade- and species-specific features of genome evolution in the Saccharomycetaceae. Wolfe Kenneth H., Armisén David, Proux-Wera Estelle, ÓhÉigeartaigh Seán S., Azam Haleema, Gordon Jonathan, Byrne Kevin P.. 2015. FEMS Yeast Research, 15 (5), 12 p.

Comparative genomic analysis of Ralstonia solanacearum reveals candidate genes for host specificity. Ailloud Florent, Lowe Tiffany, Cellier Gilles, Roche David, Allen Caitilyn, Prior Philippe. 2015. BMC Genomics, 16 (270), 11 p.

Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges. Gordon Jonathan, Lefeuvre Pierre, Escalon Aline, Barbe Valérie, Cruveiller Stéphane, Gagnevin Lionel, Pruvost Olivier. 2015. BMC Genomics, 16 (1098), 20 p.

Comparative genomics of a cannabis pathogen reveals insight into the evolution of pathogenicity in Xanthomonas. Jacobs Jonathan M., Pesce Céline, Lefeuvre Pierre, Koebnik Ralf. 2015. Frontiers in Plant Science, 6 (431), 13 p.

Deciphering genome content and evolutionary relationships of isolates from the fungus Magnaporthe oryzae attacking different host plants. Chiapello Hélène, Mallet Ludovic, Guerin Cyprien, Aguileta Gabriela, Amselem Joelle, Kroj Thomas, Ortega-Abboud Enrique, Lebrun Marc-Henri, Henrissat Bernard, Gendrault Annie, Rodolphe François, Tharreau Didier, Fournier Elisabeth. 2015. Genome Biology and Evolution, 7 (10) : 2896-2912.

Diffusion d'un virus et évolution de son génome dans les ruminants domestiques : Application à l'épidémiosurveillance de la "Peste des petits ruminants". Salami Habib. 2015. Montpellier : UM2, 125 p. Thèse de doctorat : Systèmes intégrés en biologie, agronomie, géosciences, hydrosciences et environnement (SIBAGHE). Microbiologie parasitologie : Université Montpellier 2

Draft genome sequence of Xanthomonas sacchari strain LMG 476. Pieretti Isabelle, Bolot Stéphanie, Carrère Sébastien, Barbe Valérie, Cociancich Stéphane, Rott Philippe, Royer Monique. 2015. Genome Announcements, 3 (2):e00146, 2 p.

Draft genome sequence of an alphaproteobacterium associated with the Mediterranean sponge Oscarella lobularis. Jourda Cyril, Santini Sébastien, Rocher Caroline, Le Bivic André, Claverie Jean-Michel. 2015. Genome Announcements, 3 (5):e00977-15, 2 p.

Draft genome sequences of two Xanthomonas euvesicatoria strains from the Balkan Peninsula. Vancheva Taca, Lefeuvre Pierre, Bogatzevska Nevena, Moncheva Penka, Koebnik Ralf. 2015. Genome Announcements, 3 (1):e01528, 2 p.

Draft genome sequences of two Xanthomonas vesicatoria strains from the Balkan peninsula. Vancheva Taca, Bogatzevska Nevena, Moncheva Penka, Lefeuvre Pierre, Koebnik Ralf. 2015. Genome Announcements, 3 (1):e01558-14, 2 p.

EucaMaps: linking genetic maps and associated QTLs to the Eucalyptus grandis genome. Gion Jean-Marc, Chaumeil Philippe, Plomion Christophe. 2015. Tree Genetics and Genomes, 11 (795), 7 p.

Evidence of intense chromosomal shuffling during conifer evolution. de Miguel Marina, Bartholomé Jérôme, Ehrenmann François, Murat Florent, Moriguchi Yoshinari, Uchiyama Kentaro, Ueno Saneyoshi, Tsumura Yoshihiko, Lagraulet Hélène, de Maria Nuria, Cabezas José-Antonio, Cervera María-Teresa, Gion Jean-Marc, Salse Jérôme, Plomion Christophe. 2015. Genome Biology and Evolution, 7 (1) : 2799-2809.

First external quality assessment of molecular and serological detection of rift Valley Fever in the Western Mediterranean Region. Monaco Federica, Cosseddu Gian Mario, Doumbia Baba, Madani Hafsa, El Mellouli Fatiha, Jimenez Clavero Michel Angel, Sghaier Soufien, Marianneau Philippe, Cetre-Sossah Catherine, Polci Andrea, Lacote Sandra, Lakhdar Magtouf, Fernandez-Pinero Jovita, Sari Nassim Chabane, Pinoni Chiara, Capobianco Dondona Andrea, Gallardo Carmina, Bouzid Taoufiq, Conte Ann Amaria, Bortone Grazia, Petrini Anotnio, Puech Lilian. 2015. PloS One, 10 (11):e0142129, 13 p.

Full genome sequence analysis of two isolates reveals a novel Xanthomonas species close to the sugarcane pathogen Xanthomonas albilineans. Pieretti Isabelle, Cociancich Stéphane, Bolot Stéphanie, Carrère Sébastien, Morisset Alexandre, Rott Philippe, Royer Monique. 2015. Genes, 6 (3) : 714-733.

Genome and phylogenetic analyses of Trypanosoma evansi reveal extensive similarity to T. brucei and multiple independent origins for dyskinetoplasty. Carnes Jason, Anupama Atashi, Balmer Olivier, Jackson Andrew, Lewis Michael, Brown Rob, Cestari Igor, Desquesnes Marc, Gendrin Claire, Hertz-Fowler Christiane, Imamura Hideo, Ivens Alasdair, Koreny Ludek, Lai De-Hua, MacLeod Annette, McDermott Suzanne M., Merritt Chris, Monnerat Severine, Moon Wonjong, Myler Peter, Phan Isabelle, Ramasamy Gowthaman, Sivam Dhileep, Lun Zhao-Rong, Lukes Julius, Stuart Ken, Schnaufer Achim. 2015. PLoS Neglected Tropical Diseases, 9 (1):e3404, 21 p.

Genome-enabled phylogeographic investigation of the quarantine pathogen Ralstonia solanacearum race 3 biovar 2 and screening for sources of resistance against its Core effectors. Clarke Christopher R., Studholme David J., Hayes Byron W., Runde Brendan J., Weisberg Alexandra, Cai Rongman, Wroblewski Tadeusz, Daunay Marie-Christine, Wicker Emmanuel, Castillo Jose A., Vinatzer Boris A.. 2015. Phytopathology, 105 (5) : 597-607.

Genome-wide analysis of LTR-retrotransposons in oil palm. Beulé Thierry, Agbessi Mawussé, Dussert Stéphane, Jaligot Estelle, Guyot Romain. 2015. BMC Genomics, 16 (795), 14 p.

Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome. Roux Brice, Bolot Stéphanie, Guy Endrick, Denancé Nicolas, Lautier Martine, Jardinaud Marie-Françoise, Fischer-Le-Caux Marion, Portier Perrine, Jacques Marie Agnès, Gagnevin Lionel, Pruvost Olivier, Lauber Emmanuelle, Arlat Mathieu, Carrère Sébastien, Koebnik Ralf, Noel Laurent D.. 2015. BMC Genomics, 16 (975), 19 p.

High-Quality Draft Genome Sequence of the Xanthomonas translucens pv. cerealis Pathotype Strain CFBP 2541. Pesce Céline, Bolot Stéphanie, Cunnac Sébastien, Portier Perrine, Fischer-Le-Caux Marion, Jacques Marie Agnès, Gagnevin Lionel, Arlat Mathieu, Noel Laurent D., Carrère Sébastien, Bragard Claude, Koebnik Ralf. 2015. Genome Announcements, 3 (1):e0157414, 2 p.

High-resolution genetic maps of Eucalyptus improve Eucalyptus grandis genome assembly. Bartholomé Jérôme, Mandrou Eric, Mabiala André, Jenkins Jerry, Nabihoudine Ibouniyamine, Klopp Christophe, Schmutz Jeremy, Plomion Christophe, Gion Jean-Marc. 2015. New Phytologist, 206 (4), n.spéc. Featured papers on 'Eucalyptus genome' : 1283-1296.

Identification and development of new polymorphic microsatellite markers using genome assembly for Ganoderma boninense, causal agent of oil palm basal stem rot disease. Merciere Maxime, Laybats Anthony, Carasco-Lacombe Catherine, Tan Joon Sheong, Klopp Christophe, Durand-Gasselin Tristan, Alwee Sharifah Shahrul Rabiah Syed, Camus-Kulandaivelu Létizia, Breton Frédéric. 2015. Mycological Progress, 14 (11):103, 11 p.

Identification of novel Bromus- and Trifolium-associated circular DNA viruses. Kraberger Simona, Farkas Kata, Bernardo Pauline, Booker Cameron, Argüello-Astorga Gerardo, Mesleard François, Martin Darren Patrick, Roumagnac Philippe, Varsani Arvind. 2015. Archives of Virology, 160 (5) : 1303-1311.

In Silico analysis of usher encoding genes in Klebsiella pneumoniae and characterization of their role in adhesion and colonization. Khater Fida, Balestrino Damien, Charbonnel Nicolas, Dufayard Jean-François, Brisse Sylvain, Forestier Christianne. 2015. PloS One, 10 (3):e0116215, 24 p.

La bonne santé des plantes tropicales pour atténuer les effets du changement climatique: l'exemple du caféier. Bertrand Benoît, Marraccini Pierre, Villain Luc, Breitler Jean-Christophe, Etienne Hervé. 2015. In : Changement climatique et agricultures du monde. Torquebiau Emmanuel (ed.). Versailles : Ed. Quae, 84-95. (Agricultures et défis du monde)

La fièvre de la Vallée du Rift à Mayotte : de la surveillance à la détection du génome viral. Cetre-Sossah Catherine, Mérot Philippe, Cardinale Eric. 2015. Bulletin Epidémiologique (66) : 72-74.

Mapping genetic determinants of viral traits with FST and quantitative trait locus (QTL) approaches. Doumayrou Juliette, Thébaud Gaël, Vuillaume Florence, Peterschmitt Michel, Urbino Cica. 2015. Virology, 484 : 346-353.

Mitochondrial genome sequence of the glass sponge Oopsacas minuta. Jourda Cyril, Santini Sébastien, Rocher Caroline, Le Bivic André, Claverie Jean-Michel. 2015. Genome Announcements, 3 (4):e00823-15, 2 p.

Multilocus sequence analysis of xanthomonads causing bacterial spot of tomato and pepper plants reveals strains generated by recombination among species and recent global spread of Xanthomonas gardneri. Timilsina Sujan, Jibrin Mustafa O., Potnis Neha, Minsavage Gerald V., Kebede Misrak, Schwartz Allison, Bart Rebecca, Staskawicz Brian, Boyer Claudine, Vallad Gary E., Pruvost Olivier, Jones Jeffrey R., Goss Erica. 2015. Applied and Environmental Microbiology, 81 (4) : 1520-1529.

New multilocus variable-number tandem-repeat analysis tool for surveillance and local epidemiology of bacterial leaf blight and bacterial leaf streak of rice caused by Xanthomonas oryzae. Poulin Lucie, Grygiel Pierre, Magne Maxime, Gagnevin Lionel, Rodríguez-R Luis Miguel, Forero Serna Natalia, Zhao Shuai, El Rafil M., Dao S., Tekete C., Wonni Issa, Kolta O., Pruvost Olivier, Verdier Valérie, Vernière Christian, Koebnik Ralf. 2015. Applied and Environmental Microbiology, 81 (2) : 688-698.

Orientia tsutsugamushi, agent of scrub typhus, displays a single metapopulation with maintenance of ancestral haplotypes throughout continental South East Asia. Wongprompitak Patimaporn, Duong Veasna, Anukool Wichittra, Sreyrath Lay, Mai Trinh Thi Xuan, Gavotte Laurent, Moulia Catherine, Cornillot Emmanuel, Ekpo Pattama, Suputtamongkol Yupin, Buchy Philippe, Frutos Roger. 2015. Infection, Genetics and Evolution, 31 : 1-8.

Ploidy and domestication are associated with genome size variation in palms. Gunn Bee, Baudouin Luc, Beulé Thierry, Ilbert Pascal, Duperray Christophe, Crisp Michael, Issali Auguste Emmanuel, Konan Jean-Louis, Rival Alain. 2015. American Journal of Botany, 102 (10) : 1625-1633.

SNiPlay3: A web-based application for exploration and large scale analyses of genomic variations. Dereeper Alexis, Homa Félix, Andres Gwendoline, Sempere Guilhem, Sarah Gautier, Hueber Yann, Dufayard Jean François, Ruiz Manuel. 2015. Nucleic Acids Research, 43 (W1) : W295-W300.

Seeking signatures of reinforcement at the genetic level: a hitchhiking mapping and candidate gene approach in the house mouse. Smadja Carole, Loire Etienne, Caminade Pierre, Thoma Marios, Latour Yasmin, Roux Camille, Thoss Michaela, Penn Dustin J., Ganem Guila, Boursot Pierre. 2015. Molecular Ecology, 24 (16) : 4222-4237.

Site and Saccharum spontaneum introgression level drive sugarcane yield component traits and their impact on sucrose yield in contrasted radiation and thermal conditions in La Réunion. Gouy Matthieu, Luquet Delphine, Rouan Lauriane, Martiné Jean-François, Thong-Chane Audrey, Costet Laurent, Nibouche Samuel, Gozé Eric. 2015. Field Crops Research, 171 : 99-108.

TcCYPR04, a cacao papain-like cysteine-protease detected in senescent and necrotic tissues interacts with a cystatin TcCYS4. Cardoso Thyago Hermylly Santana, Oliveira Freitas Ana Camila, Andrade Bruno Silva, Oliveira de Sousa Aurizângela, Da Silva Santiago André, Koop Daniela Martins, Gramacho Karina Peres, Alvim Fatima Cerqueira, Micheli Fabienne, Pirovani Carlos Priminho. 2015. PloS One, 10 (12):e0144440, 20 p.

Tomato chlorotic mottle Guyane virus: A novel tomato-infecting bipartite begomovirus from French Guiana. Lett Jean-Michel, De Bruyn Alexandre, Hoareau Murielle, Ouattara Alassane, Claverie Sohini, Dalmon Anne, Laplace Damien, Lefeuvre Pierre, Hostachy Bruno. 2015. Archives of Virology, 160 (11) : 2887-2890.

What makes Xanthomonas albilineans unique amongst xanthomonads? Pieretti Isabelle, Pesic Alexander, Petras Daniel, Royer Monique, Süssmuth Roderich, Cociancich Stéphane. 2015. Frontiers in Plant Science, 6 (289), 7 p.

The chloroplast genome of the hexaploid Spartina maritima (Poaceae, Chloridoideae): Comparative analyses and molecular dating. Rousseau-Gueutin Mathieu, Bellot Sidonie, Martin Guillaume, Boutte Julien, Chelaifa Houda, Lima Oscar, Michon-Coudouel Sophie, Naquin Delphine, Salmon Armel, Ainouche K., Ainouche Malika Lily. 2015. Molecular Phylogenetics and Evolution, 93 : 5-16.

The coffee genome hub: a resource for coffee genomes. Dereeper Alexis, Bocs Stéphanie, Rouard Mathieu, Guignon Valentin, Ravel Sébastien, Tranchant-Dubreuil Christine, Poncet Valérie, Garsmeur Olivier, Lashermes Philippe, Droc Gaëtan. 2015. Nucleic Acids Research, 43 (D1), D1028-D1035

The genome sequence of the orchid Phalaenopsis equestris. Cai Jing, Vanneste Kevin, Proost Sebastian, Tsai Wen-Chieh, Liu Ke-Wei, Chen Li-Jun, He Ying, Xu Qing, Bian Chao, Zheng Zhijun, Sun Fengming, Liu Weiqing, Hsiao Yu-Yun, Pan Zhao-Jun, Hsu Chia-Chi, Yang Ya-Ping, Hsu Yi-Chin, Chuang Yu-Chen, Diévart Anne, Dufayard Jean-François, Xu Xun, Wang Juhui, Wang Jung, Xiao Xin-Ju, Zhao Xue-Min, Du Rong, Zhang Guo-Qiang, Wang Meina, Su Yong-Yu, Xie Gao-Chang, Liu Guo-Hui, Li Li-Qiang, Huang Lai-Qiang, Luo Yi-Bo, Chen Hong-Hwa, Van de Peer Yves, Liu Zhong-Jian. 2015. Nature Genetics, 47 (1) : 65-74.

The genomes of many yam species contain transcriptionally active endogenous geminiviral sequences that may be functionally expressed. Filloux Denis, Murrell Sasha, Koohapitagtam M., Golden Michael, Julian Charlotte, Galzi Serge, Uzest Marilyne, Rodier-Goud Marguerite, D'Hont Angélique, Vernerey Marie-Stéphanie, Wilkin P., Peterschmitt Michel, Winter Stephan, Murrell Ben, Martin Darren Patrick, Roumagnac Philippe. 2015. Virus Evolution, 1 (1), 17 p.

A large-scale genomic approach affords unprecedented resolution for the molecular epidemiology and evolutionary history of contagious caprine pleuropneumonia. Dupuy Virginie, Verdier Axel, Thiaucourt François, Manso-Silvan Lucia. 2015. Veterinary Research, 46 (74), 11 p.

Building the sugarcane genome for biotechnology and identifying evolutionary trends. de Setta Nathalia, Monteiro-Vitorello Cláudia, Metcalfe Cushla Jane, Cruz Guilherme Marcelo Queiroga, Del Bem Luiz Eduardo, Vicentini Renato, Tebaldi Silveira Nogueira Fábio, Alvares Campos Roberta, Lima Nunes Sideny, Gasperazzo Turrini Paula Crisina, Prata Vieira Andreia, Ochoa Cruz Edgar Andrés, Silveira Corrêa Tatiana Caroline, Takeshi Hotta Carlos, de Mello Varani Alessandro, Vautrin Sonia, Silva da Trindade Adilson, de Mendonça Vilela Marianne, Gimiliani Lembke Carolina, Mieko Sato Paloma, Fandino de Andrade Rodrigo, Yutaka Nishiyama Milton, Cardoso-Silva Claudio Benicio, Castanho Scortecci Katia, Garcia Antonio Augusto Franco, Sampaio Carneiro Monalisa, Kim Changsoo, Paterson Andrew H., Berges Hélène, D'Hont Angélique, Pereira de Souza Anete, Mendes Souza Glaucia, Vincentz Michel, Kitajima João Paulo, Van Sluys Marie-Anne. 2014. BMC Genomics, 15 (540), 18 p.

Caractérisation des différences de structures chromosomiques dans l'espèce Musa acuminata par re-séquençage ; le cas de l'accession Pahang. Martin Guillaume. 2014. Montpellier : Montpellier SupAgro, 299 p. Thèse de doctorat : Systèmes intégrés en biologie, agronomie, géosciences, hydrosciences, environnement (SIBAGHE). Biologie intégrative des plantes : Montpellier SupAgro Centre international d'études supérieures en sciences agronomiques

Complete genome sequence of a field strain of peste des petits ruminants virus Iisolated during 2010-2014 epidemics in Senegal. Salami Habib, Croville Guillaume, Kwiatek Olivier, Mariette Jérôme, Klopp Christophe, Valière Sophie, Guerin Jean-Luc, Lo Moustapha, Thiongane Yaya, Albina Emmanuel, Libeau Geneviève. 2014. Genome Announcements, 2 (5):e00772, 2 p.

Complete genome sequences of lineage III peste des petits ruminants viruses from the Middle East and East Africa. Muniraju Murali, Munir Muhammad, Banyard Ashley C., Ayebazibwe Chrisostom, Wensman Jonas, Zohari Siamak, Berg Mikael, Parthiban AravindhBabu R., Mahapatra Mana, Libeau Geneviève, Batten Carrie, Parida Satya. 2014. Genome Announcements, 2 (5):e01023, 2 p.

Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies. Mariac Cédric, Scarcelli Nora, Pouzadou Juliette, Barnaud Adeline, Billot Claire, Faye Adama, Kougbeadjo Ayite, Maillol Vincent, Martin Guillaume, Sabot François, Santoni Sylvain, Vigouroux Yves, Couvreur Thomas. 2014. Molecular Ecology Resources, 14 (6) : 1103-1113.

Draft genome sequence of Xanthomonas axonopodis pv. allii strain CFBP 6369. Gagnevin Lionel, Bolot Stéphanie, Gordon Jonathan, Pruvost Olivier, Vernière Christian, Robène Isabelle, Arlat Mathieu, Noel Laurent D., Carrère Sébastien, Jacques Marie Agnès, Koebnik Ralf. 2014. Genome Announcements, 2 (4):e00727, 2 p.

Draft genome sequence of the flagellated Xanthomonas fuscans subsp. fuscans strain CFBP 4884. Indiana Arnaud, Briand Martial, Arlat Mathieu, Gagnevin Lionel, Koebnik Ralf, Noel Laurent D., Portier Perrine, Darrasse Armelle, Jacques Marie Agnès. 2014. Genome Announcements, 2 (5):e00966, 2 p.

Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution. Geering Andrew D., Maumus Florian, Copetti Michele, Choisne Nathalie, Zwickl Derrick J., Zytnicki Matthias, Mc Taggart Alistair R., Scalabrin Simone, Vezzulli Silvia, Wing Rod A., Quesneville Hadi, Teycheney Pierre-Yves. 2014. Nature Communications, 5 (2569), 11 p.

Etude de la synthèse des exopolysaccharides sécrétés par les mycoplasmes du groupe "mycoides" et, notamment, par Mycoplasma mycoides subsp. mycoides, agent de la péripneumonie contagieuse bovine. Bertin Clothilde. 2014. Villeurbanne : UCLB, 153 p. Thèse de doctorat : Microbiologie : Université Claude Bernard Lyon 1

Evolution of plant eukaryotic initiation factor 4E (eIF4E) and potyvirus genome-linked protein (VPg): A game of mirrors impacting resistance spectrum and durability. Moury Benoit, Charron Carine, Janzac Bérenger, Simon V., Gallois Jean-Luc, Palloix Alain, Caranta Carole. 2014. Infection, Genetics and Evolution, 27 : 472-480.

Expansion of banana (Musa acuminata) gene families involved in ethylene biosynthesis and signalling after lineage-specific whole-genome duplications. Jourda Cyril, Cardi Céline, Mbéguié-A-Mbéguié Didier, Bocs Stéphanie, Garsmeur Olivier, D'Hont Angélique, Yahiaoui Nabila. 2014. New Phytologist, 202 (3) : 986-1000.

First Report of 'Candidatus Liberibacter asiaticus' associated with Huanglongbing on Citrus latifolia in Martinique and Guadeloupe,French West Indies. Cellier Gilles, Moreau A., Cassam Nathalie, Hostachy Bruno, Ryckewaert Philippe, Aurela L., Picard R., Lombion Ketty, Rioualec Anne-Laure. 2014. Plant Disease, 98 (5) : p. 683.

Genome wide profiling of Azospirillum lipoferum 4B gene expression during interaction with rice roots. Drogue Benoit, Sanguin Hervé, Borland Stéphanie, Prigent-Combaret Claire, Wisniewski-Dyé Florence. 2014. FEMS Microbiology, Ecology, 87 (2) : 543-555.

Global strategy for the conservation and use of coconut genetic resources 2014-2023: A draft summary. Johnson Vincent, Bourdeix Roland. 2014. Montpellier : COGENT, 31 p.

Impact of recurrent gene duplication on adaptation of plant genomes. Fischer Iris, Dainat Jacques, Ranwez Vincent, Glemin Sylvain, Dufayard Jean-François, Chantret Nathalie. 2014. BMC Plant Biology, 14 (151), 15 p.

Molecular characterization of yam virus X, a new potexvirus infecting yams (Dioscorea spp) and evidence for the existence of at least three distinct potexviruses infecting yams. Acina Manbole Isabelle Nina, Bonheur Lydiane, Svanella-Dumas Laurence, Filloux Denis, Gomez Rose-Marie, Faure Chantal, Lange David, Anzala Fabiola, Pavis Claudie, Marais Armelle, Roumagnac Philippe, Candresse Thierry, Teycheney Pierre-Yves. 2014. Archives of Virology, 159 (12) : 3421-3426.

Placental genome and maternal-placental genetic interactions: A genome-wide and candidate gene association study of placental abruption. Denis Marie, Salazar M., Williams M.A., Enquobahrie Daniel A., Tadesse Mahlet G., Sanchez Sixto E., Ananth Cande V.. 2014. PloS One, 9 (12):e116346, 24 p.

Predicting the Minimal translation apparatus: Lessons from the reductive evolution of Mollicutes. Grosjean Henri, Breton Marc, Sirand-Pugnet Pascal, Tardy Florence, Thiaucourt François, Citti Christine, Barré Aurélien, Yoshizawa Satoko, Fourmy Dominique, De Crécy-Lagard Valérie, Blanchard Alain. 2014. PLoS Genetics, 10 (5):e1004363, 21 p.

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Wu Guohong Albert, Prochnik Simon, Jenkins Jerry, Salse Jérôme, Hellsten Uffe, Murat Florent, Perrier Xavier, Ruiz Manuel, Scalabrin Simone, Terol Javier F., Takita Marco Aurélio, Labadie Karine, Poulain Julie, Couloux Arnaud, Jabbari Kamel, Cattonaro Frederica, Del Fabbro Cristian, Pinosio Sara, Zuccolo Andrea, Chapman Jarrod, Grimwood Jane, Tadeo Francisco, Estornell Leandro H., Muñoz-Sanz Juan V., Ibáñez Victoria, Herrero-Ortega Amparo, Aleza Pablo, Pérez-Pérez Júlian, Ramón Daniel, Brunel Dominique, Luro François, Chen Chunxian, Farmerie William G., Desany Brian, Kodira Chinnappa, Mohiuddin Mohammed, Harkins Tim, Fredrikson Karin, Burns Paul, Lomsadze Alexandre, Borodovsky Mark, Reforgiato Giuseppe, Freitas-Astúa Juliana, Quetier Francis, Navarro Luis, Roose Mikeal L., Wincker Patrick, Schmutz Jeremy, Morgante Michele, Machado Marcos Antonio, Talon Manuel, Ollitrault Patrick, Gmitter Frederick G. Jr., Rokhsar Daniel S.. 2014. Nature Biotechnology, 32 : 656-662.

Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima). Nabholz Benoit, Sarah Gautier, Sabot François, Ruiz Manuel, Adam Hélène, Nidelet Sabine, Ghesquière Alain, Santoni Sylvain, David Jacques, Glemin Sylvain. 2014. Molecular Ecology, 23 (9) : 2210-2227.

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Denoeud France, Carretero-Paulet Lorenzo, Dereeper Alexis, Droc Gaëtan, Guyot Romain, Pietrella Marco, Chunfang Zheng, Alberti Adriana, Anthony François, Aprea Giuseppe, Aury Jean-Marc, Bento Pascal, Bernard Maria, Bocs Stéphanie, Campa Claudine, Cenci Alberto, Combes Marie-Christine, Crouzillat Dominique, Da Silva Corinne, Daddiego Loretta, De Bellis Fabien, Dussert Stéphane, Garsmeur Olivier, Gayraud Thomas, Guignon Valentin, Jahn Katharina, Jamilloux Véronique, Joët Thierry, Labadie Karine, Tianying Lan, Leclercq Julie, Lepelley Maud, Leroy Thierry, Lei-Ting Li, Librado Pablo, Lopez Loredana, Muñoz Adriana, Noël Benjamin, Pallavicini Alberto, Perrotta Gaetano, Poncet Valérie, Pot David, Priyono, Rigoreau Michel, Rouard Mathieu, Rozas Julio, Tranchant-Dubreuil Christine, VanBuren Robert, Qiong Zhang, Andrade Alan A., Argout Xavier, Bertrand Benoît, De Kochko Alexandre, Graziosi Giorgio, Henry Robert, Jayarama, Ming Ray, Nagai Chifumi, Rounsley Steve, Sankoff David, Giuliano Giovanni, Albert Victor A., Wincker Patrick, Lashermes Philippe. 2014. Science, 345 (6201) : 1181-1184.

The first complete chloroplast genome of the Genistoid legume Lupinus luteus: evidence for a novel major lineage-specific rearrangement and new insights regarding plastome evolution in the legume family. Martin Guillaume, Rousseau-Gueutin Mathieu, Cordonnier Solenn, Lima Oscar, Michon-Coudouel Sophie, Naquin Delphine, de Carvalho Julie Ferreira, Ainouche Malika Lily, Salmon Armel, Ainouche Abdelkader. 2014. Annals of Botany, 113 (7) : 1197-1210.

The genomic substrate for adaptive radiation in African cichlid fish. Brawand David, Wagner Catherine E., Li Yang I., Malinsky Milan, Keller Irène, Fan Shaohua, Simakov Oleg, Ng Alvin Y., Lim Zhi Wei, Bezault Etienne, Turner-Maier Jason, Johnson Jeremy, Alcazar Rosa, Noh Hyun Ji, Russell Pamela, Aken Bronwen, Alföldi Jessica, Amemiya Chris, Azzouzi Naoual, Baroiller Jean-François, Barloy-Hubler Frédérique, Berlin Aaron, Bloomquist Ryan, Carleton Karen L., Conte Matthew A., D'Cotta Helena, Eshel Orly, Gaffney Leslie, Galibert Francis, Gante Hugo F., Gnerre Sante, Greuter Lucie, Guyon Richard, Haddad Nathalie S., Haerty Wilfried, Harris Rayna M., Hofmann Hans A., Hourlier Thibaut, Hulata Gideon, Jaffe David B., Lara Marcia, Lee Alison P., MacCallum Iain, Mwaiko Salome, Nikaido Masato, Nishihara Hidenori, Ozouf-Costaz Catherine, Penman David J., Przybylski Darius, Rakotomanga Michelle, Renn Suzy C. P., Ribeiro Filipe J., Ron Micha, Salzburger Walter, Sanchez-Pulido Luis, Santos Emilia, Searle Steve, Sharpe Ted, Swofford Ross, Tan Frederick J., Williams Louise, Young Sarah, Yin Shuangye, Okada Norihiro, Kocher Thomas D., Miska Eric A., Lander Eric S., Venkatesh Byrappa, Fernald Russell D., Meyer Axel, Ponting Chris P., Streelman J. Todd, Lindblad-Toh Kerstin, Seehausen Ole, Di Palma Frederica. 2014. Nature, 513 (7518) : 375-381.

The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Seal Susan, Turaki Aliyu, Muller Emmanuelle, Lava Kumar P., Kenyon Lawrence, Filloux Denis, Galzi Serge, Lopez-Montes Antonio, Iskra Caruana Marie-Line. 2014. Virus Research, 186 : 144-145. International Plant Virus Epidemiology Symposium. 12, Arusha, Tanzanie, 28 Janvier 2013/1 Février 2013.

The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants. Porcel Betina M., Denoeud France, Opperdoes Fred, Noël Benjamin, Madoui Mohammed-Amine, Hammarton Tansy, Field Mark, Da Silva Corinne, Couloux Arnaud, Poulain Julie, Katinka Michael, Jabbari Kamel, Aury Jean-Marc, Campbell David A., Cintron Roxana, Dickens Nicolas, Docampo Roberto, Sturm Nancy R., Koumandou Lila, Fabre Sandrine, Flegontov Pavel, Lukes Julius, Michaeli Shula, Mottram Jeremy, Szoor Balazs, Zilberstein Dan, Bringaud Frédéric, Wincker Patrick, Dollet Michel. 2014. PLoS Genetics, 10 (2):e1004007, 24 p.

BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution. Dereeper Alexis, Guyot Romain, Tranchant-Dubreuil Christine, Anthony François, Argout Xavier, De Bellis Fabien, Combes Marie-Christine, Gavory Fréderick, De Kochko Alexandre, Kudrna Dave, Leroy Thierry, Poulain Julie, Rondeau Myriam, Song Xiang, Wing Rod A., Lashermes Philippe. 2013. Plant Molecular Biology, 83 (3) : 177-189.

Draft genome sequence of the Xanthomonas cassavae type strain CFBP 4642. Bolot Stéphanie, Munoz Bodnar Alejandra, Cunnac Sébastien, Ortiz Erika, Szurek Boris, Noel Laurent D., Arlat Mathieu, Jacques Marie Agnès, Gagnevin Lionel, Portier Perrine, Fischer-Le Saux Marion, Carrère Sébastien, Koebnik Ralf. 2013. Genome Announcements, 1 (4):e00679, 13 p.

Draft genome sequences of Mycoplasma auris, Mycoplasma arginini, and Mycoplasma yeatsii, two species of the ear canal of Caprinae. Dordet-Frisoni Emilie, Baranowski Eric, Barré Aurélien, Blanchard Alain, Breton Marc, Couture Carole, Dupuy Virginie, Gaurivaud Patrice, Jacob Daniel, Lemaitre Claire, Manso-Silvan Lucia, Nikolski Macha, Nouvel Laurent Xavier, Poumarat François, Sirand-Pugnet Pascal, Thebault Patricia, Theil Sébastien, Thiaucourt François, Citti Christine, Tardy Florence. 2013. Genome Announcements, 1 (3) : 00280-13.

Evidence for novel hepaciviruses in rodents. Drexler Jan Felix, Corman Victor Max, Müller Marcel Alexander, Lukashev Alexander N., Gmyl Anatoly, Coutard Bruno, Adam Alexander, Ritz Daniel, Leijten Lonneke M., Van Riel Debby, Kallies Rene, Klose Stefan M., Gloza-Rausch Florian, Binger Tabea, Annan Augustina, Adu-Sarkodie Yaw, Oppong Samuel, Bourgarel Mathieu, Rupp Daniel, Hoffmann Bernd, Schlegel Mathias, Kümmerer Beate M., Krüger Detlev H., Schmidt-chanasit Jonas, Aguilar Setién Alvaro, Cottontail Veronika M., Hemachudha Thiravat, Wacharapluesadee Supaporn, Osterrieder Klaus, Bartenschlager Ralf, Matthee Sonja, Beer Martin, Kuilen Thijs, Reusken Chantal, Leroy Eric M., Ulrich Rainer G., Drosten Christian. 2013. PLoS Pathogens, 9 (6):e1003438, 17 p.

Gene copy number is differentially regulated in a multipartite virus. Sicard Anne, Yvon Michel, Timchenko Tatiana, Gronenborn Bruno, Michalakis Yannis, Gutierrez Serafin, Blanc Stéphane. 2013. Nature Communications, 4:2248, 8 p.

Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides. Royer Monique, Koebnik Ralf, Marguerettaz Mélanie, Barbe Valérie, Robin Guillaume P., Brin Christelle, Carrère Sébastien, Gomez Camila, Hügelland Manuela, Völler Ginka H., Noëll Julie, Pieretti Isabelle, Rausch Saskia, Verdier Valérie, Poussier Stéphane, Rott Philippe, Süssmuth Roderich, Cociancich Stéphane. 2013. BMC Genomics, 14 (658), 19 p.

Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads. Darrasse Armelle, Carrère Sébastien, Barbe Valérie, Boureau Tristan, Arrieta-Ortiz Mario L., Bonneau Sophie, Briand Martial, Brin Christelle, Cociancich Stéphane, Durand Karine, Fouteau Stéphanie, Gagnevin Lionel, Guérin Fabien, Guy Endrick, Indiana Arnaud, Koebnik Ralf, Lauber Emmanuelle, Munoz Alejandra, Noel Laurent D., Pieretti Isabelle, Poussier Stéphane, Pruvost Olivier, Robène-Soustrade Isabelle, Rott Philippe, Royer Monique, Serres-Giardi Laurana, Szurek Boris, Van Sluys Marie-Anne, Verdier Valérie, Vernière Christian, Arlat Mathieu, Manceau Charles, Jacques Marie Agnès. 2013. BMC Genomics, 14 (761), 30 p.

Genome-wide association mapping of root traits in a japonica rice panel. Courtois Brigitte, Audebert Alain, Dardou Audrey, Roques Sandrine, Ghneim Thaura, Droc Gaëtan, Frouin Julien, Rouan Lauriane, Gozé Eric, Kilian Andrzej, Ahmadi Nourollah, Dingkuhn Michaël. 2013. PloS One, 8 (11):e78037, 18 p.

Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. manihotis strain CIO151. Arrieta-Ortiz Mario L., Rodríguez-R Luis Miguel, Pérez-Quintero Alvaro L., Poulin Lucie, Díaz Ana C., Arias Rojas Nathalia, Trujillo Cesar, Restrepo Benavides Mariana, Bart Rebecca, Boch Jen, Boureau Tristan, Darrasse Armelle, David Perrine, Dugé de Bernonville Thomas, Fontanilla Paula, Gagnevin Lionel, Guérin Fabien, Jacques Marie Agnès, Lauber Emmanuelle, Lefeuvre Pierre, Medina Cesar, Medina Edgar, Montenegro Nathaly, Munoz Alejandra, Noel Laurent D., Ortiz Quiñoes Juan F., Osorio Daniela, Pardo Carolina, Patil Prabhu B., Poussier Stéphane, Pruvost Olivier, Robène-Soustrade Isabelle, Ryan Robert P., Tabima Javier, Urrego Morales Osacar G., Vernière Christian, Carrère Sébastien, Verdier Valérie, Szurek Boris, Restrepo Silvia, López Camilo, Koebnik Ralf, Bernal Adriana Jimena. 2013. PloS One, 8 (11):e79704, 18 p.

High-Quality Draft Genome Sequences of Two Xanthomonas citri pv. malvacearum Strains. Cunnac Sébastien, Bolot Stéphanie, Forero Serna Natalia, Ortiz Erika, Szurek Boris, Noel Laurent D., Arlat Mathieu, Jacques Marie Agnès, Gagnevin Lionel, Carrère Sébastien, Nicole Michel, Koebnik Ralf. 2013. Genome Announcements, 1 (4):e00674, 2 p.

High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination. Chancerel Emilie, Lamy Jean-Baptiste, Lesur Isabelle, Noirot Céline, Klopp Christophe, Ehrenmann François, Boury Christophe, Le Provost Grégoire, Label Philippe, Lalanne Céline, Léger Valérie, Salin Franck, Gion Jean-Marc, Plomion Christophe. 2013. BMC Biology, 11 (50), 19 p.

Identification and characterisation of a highly divergent geminivirus: Evolutionary and taxonomic implications. Bernardo Pauline, Golden Michael, Akram Mohammad, Naimuddin, Nadarajan Nagaswamy, Fernandez Emmanuel, Granier Martine, Rebelo Anthony, Peterschmitt Michel, Martin Darren Patrick, Roumagnac Philippe. 2013. Virus Research, 177 (1) : 35-45.

Identification of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing. Duan Cuifang, Argout Xavier, Gebelin Virginie, Summo Marilyne, Dufayard Jean-François, Leclercq Julie, Kuswanhadi, Piyatrakul Piyanuch, Pirrello Julien, Rio Maryannick, Champion Anthony, Montoro Pascal. 2013. BMC Genomics, 14 (30), 22 p.

Mutant resources for functional analysis of the rice genome. Droc Gaëtan, An Gynheung, Wu Changyin, Hsing Yue-ie C., Hirochika Hirohiko, Pereira Andy, Sundaresan Venkatesan, Han Chang-deok, Upadhyaya Narayana, Ramachandran Srinivasan, Comai Luca, Leung Hei, Guiderdoni Emmanuel. 2013. In : Genetics and genomics of rice. Zhang Qifa (ed.), Wing Rod (ed.). New York : Springer [Etats-Unis], 81-115. (Plant Genetics and Genomics: Crops and Models, 5) ISBN 978-1-4614-7902-4

The RpfCG two-component system negatively regulates the colonization of sugar cane stalks by Xanthomonas albilineans. Rott Philippe, Fleites Laura, Mensi Imène, Sheppard L.J., Daugrois Jean-Heinrich, Dow J. Maxwell, Gabriel Dean W.. 2013. Microbiology, 159 (6) : 1149-1159.

Three infectious viral species lying in wait in the banana genome. Chabannes Matthieu, Baurens Franc-Christophe, Duroy Pierre-Olivier, Bocs Stéphanie, Vernerey Marie-Stéphanie, Rodier-Goud Marguerite, Barbe Valérie, Gayral Philippe, Iskra Caruana Marie-Line. 2013. Journal of Virology, 87 (15) : 8624-8637.

Transcriptional activity, chromosomal distribution and expression effects of transposable elements in Coffea genomes. Lopes Fabrício R., Jjingo Daudi, Da Silva Carlos R.M., Andrade Alan Carvalho, Marraccini Pierre, Teixeira João B., Carazzolle Marcelo Falsarella, Pereira Gonçalo Amarante Guimarães, Pereira Luiz Filipe P., Vanzela André L.L., Wang Lu, Jordan King, Carareto Claudia M.A.. 2013. PloS One, 8 (11):e78931, 16 p.

Variétés et porte-greffes : création, description et sélection. Jacquemond Camille, Curk Franck, Froelicher Yann, Luro François. 2013. In : Les clémentiniers et autres petits agrumes. Jacquemond Camille (ed.), Curk Franck (ed.), Heuezt Marion (ed.). Versailles : Ed. Quae, 37-107. (Savoir-faire) ISBN 978-2-7592-2067-0

The banana genome hub. Droc Gaëtan, Larivière Delphine, Guignon Valentin, Yahiaoui Nabila, This Dominique, Garsmeur Olivier, Dereeper Alexis, Hamelin Chantal, Argout Xavier, Dufayard Jean-François, Lengellé Juliette, Baurens Franc-Christophe, Cenci Alberto, Pitollat Bertrand, D'Hont Angélique, Ruiz Manuel, Rouard Mathieu, Bocs Stéphanie. 2013. Database, 2013 (bat035), 14 p.

The complete chloroplast genome of banana (Musa acuminata, Zingiberales): Insight into plastid monocotyledon evolution. Martin Guillaume, Baurens Franc-Christophe, Cardi Céline, Aury Jean-Marc, D'Hont Angélique. 2013. PloS One, 8 (6):e67350, 10 p.

An initial assessment of linkage disequilibrium (LD) in coffee trees: LD patterns in groups of Coffea canephora Pierre using microsatellite analysis. Cubry Philippe, De Bellis Fabien, Avia Komlan, Bouchet Sophie, Pot David, Dufour Magali, Legnaté Hyacinthe, Leroy Thierry. 2013. BMC Genomics, 14 (10), 15 p.

4th Xanthomonas genomics conference, Angers, France, july 9-12, 2012 : Book of abstracts. Manceau Charles (ed.), Jacques Marie Agnès (ed.), Arlat Mathieu (ed.), Lauber Emmanuelle (ed.), Noel Laurent D. (ed.), Gagnevin Lionel (ed.), Pruvost Olivier (ed.), Rott Philippe (ed.), Royer Monique (ed.), Koebnik Ralf (ed.), Verdier Valérie (ed.). 2012. Paris : INRA, 85 p. Xanthomonas genomics conference 2012. 4, Angers, France, 9 Juillet 2012/12 Juillet 2012.

Analysis of the Meiotic Segregation in Intergeneric Hybrids of Tilapias. Bezault Etienne, Rognon François, Clota Frédéric, Gharbi Karim, Baroiller Jean-François, Chevassus Bernard. 2012. International Journal of Evolutionary Biology, 2012 (ID 817562), 10 p.