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Draft genome sequences of Neurospora crassa clade B, isolated from burned Cytisus sp. plants in France. Bonometti Lucas, De Bellis Fabien, Cros-Arteil Sandrine, Gladieux Pierre, Stajich Jason E., Gueret Elise. 2023. Microbiology Resource Announcements, 12 (12), 3 p.

The complete chloroplast genome of Artocarpus altilis (Moraceae) and phylogenetic relationships. Borges de Souza Ueric José, dos Santos Raíssa Nunes, de Araújo Filho Renisson Neponuceno, dos Santos Gil Rodrigues, Almeida Sarmento Renato, De Bellis Fabien, Campos Fabrício Souza. 2021. Mitochondrial DNA. Part B. Resources, 6 (8) : 2291-2293.

Gigwa v2—Extended and improved genotype investigator. Sempere Guilhem, Petel Adrien, Rouard Mathieu, Frouin Julien, Hueber Yann, De Bellis Fabien, Larmande Pierre. 2019. GigaScience, 8 (5), 9 p.

Evolutionary forces affecting synonymous variations in plant genomes. Clément Yves, Sarah Gautier, Holtz Yan, Homa Félix, Pointet Stéphanie, Contreras Sandy, Nabholz Benoit, Sabot François, Sauné Laure, Ardisson Morgane, Bacilieri Roberto, Besnard Guillaume, Berger Angélique, Cardi Céline, De Bellis Fabien, Fouet Olivier, Jourda Cyril, Khadari Bouchaib, Lanaud Claire, Leroy Thierry, Pot David, Sauvage Christopher, Scarcelli Nora, Tregear James, Vigouroux Yves, Yahiaoui Nabila, Ruiz Manuel, Santoni Sylvain, Labouisse Jean-Pierre, Pham Jean Louis, David Jacques, Glemin Sylvain. 2017. PLoS Genetics, 13 (5):e1006799, 28 p.

Revealing the diversity of introduced Coffea canephora germplasm in Ecuador: Towards a national strategy to improve robusta. Loor Solorzano Rey Gaston, De Bellis Fabien, Leroy Thierry, Plaza Luis, Guerrero Hilton, Subia Cristian, Calderón Darío, Fernández Fabián, Garzón Iván, Lopez Diana, Vera Danilo. 2017. Scientific World Journal, 2017:e1248954, 12 p.

Identification of candidate genes for drought tolerance in coffee by high-throughput sequencing in the shoot apex of different Coffea arabica cultivars. Souto Mofatto Luciana, De Araújo Carneiro Fernanda, Gomes Vieira Natalia, Duarte Karoline Estefani, Vidal Ramon Oliveira, Alekcevetch Jean Carlos, Guitton Cotta Michelle, Verdeil Jean-Luc, Lapeyre-Montes Fabienne, Lartaud Marc, Leroy Thierry, De Bellis Fabien, Pot David, Costa Rodrigues Gustavo, Falsarella Carazzolle Marcelo, Guimarães Pereira Gonçalo Amarante, Carvalho Andrade Alan, Marraccini Pierre. 2016. BMC Plant Biology, 16 (94), 18 p.

New development and validation of 50 SSR markers in breadfruit (Artocarpus altilis, Moraceae) by next-generation sequencing. De Bellis Fabien, Malapa Roger, Kagy Valérie, Lebegin Stéphane, Billot Claire, Labouisse Jean-Pierre. 2016. Applications in Plant Sciences, 4 (8):e1600021, 7 p.

Developing core collections to optimize the management and the exploitation of diversity of the coffee Coffea canephora. Leroy Thierry, De Bellis Fabien, Legnaté Hyacinthe, Musoli Pascal, Kalongji Adrien, Loor Solorzano Rey Gaston, Cubry Philippe. 2014. Genetica, 142 (3) : 185-199.

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Denoeud France, Carretero-Paulet Lorenzo, Dereeper Alexis, Droc Gaëtan, Guyot Romain, Pietrella Marco, Chunfang Zheng, Alberti Adriana, Anthony François, Aprea Giuseppe, Aury Jean-Marc, Bento Pascal, Bernard Maria, Bocs Stéphanie, Campa Claudine, Cenci Alberto, Combes Marie-Christine, Crouzillat Dominique, Da Silva Corinne, Daddiego Loretta, De Bellis Fabien, Dussert Stéphane, Garsmeur Olivier, Gayraud Thomas, Guignon Valentin, Jahn Katharina, Jamilloux Véronique, Joët Thierry, Labadie Karine, Tianying Lan, Leclercq Julie, Lepelley Maud, Leroy Thierry, Lei-Ting Li, Librado Pablo, Lopez Loredana, Muñoz Adriana, Noël Benjamin, Pallavicini Alberto, Perrotta Gaetano, Poncet Valérie, Pot David, Priyono, Rigoreau Michel, Rouard Mathieu, Rozas Julio, Tranchant-Dubreuil Christine, VanBuren Robert, Qiong Zhang, Andrade Alan A., Argout Xavier, Bertrand Benoît, De Kochko Alexandre, Graziosi Giorgio, Henry Robert, Jayarama, Ming Ray, Nagai Chifumi, Rounsley Steve, Sankoff David, Giuliano Giovanni, Albert Victor A., Wincker Patrick, Lashermes Philippe. 2014. Science, 345 (6201) : 1181-1184.

BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution. Dereeper Alexis, Guyot Romain, Tranchant-Dubreuil Christine, Anthony François, Argout Xavier, De Bellis Fabien, Combes Marie-Christine, Gavory Fréderick, De Kochko Alexandre, Kudrna Dave, Leroy Thierry, Poulain Julie, Rondeau Myriam, Song Xiang, Wing Rod A., Lashermes Philippe. 2013. Plant Molecular Biology, 83 (3) : 177-189.

Global analysis of Coffea canephora Pierre ex Froehner (Rubiaceae) from the Guineo-Congolese region reveals impacts from climatic refuges and migration effects. Cubry Philippe, De Bellis Fabien, Pot David, Musoli Pascal, Leroy Thierry. 2013. Genetic Resources and Crop Evolution, 60 (2) : 483-501.

An initial assessment of linkage disequilibrium (LD) in coffee trees: LD patterns in groups of Coffea canephora Pierre using microsatellite analysis. Cubry Philippe, De Bellis Fabien, Avia Komlan, Bouchet Sophie, Pot David, Dufour Magali, Legnaté Hyacinthe, Leroy Thierry. 2013. BMC Genomics, 14 (10), 15 p.

Construction of chromosome segment substitution lines in peanut (Arachis hypogaea L.) using a wild synthetic and QTL mapping for plant morphology. Foncéka Daniel, Tossim Hodo-Abalo, Rivallan Ronan, Vignes Hélène, Lacut Elodie, De Bellis Fabien, Faye Issa, Ndoye Ousmane, Leal-Bertioli Soraya C.M., Valls José F.M., Bertioli David J., Glaszmann Jean-Christophe, Courtois Brigitte, Rami Jean-François. 2012. PloS One, 7 (11):e48642, 11 p.

Improving the quality of African robustas: QTLs for yield- and quality-related traits in Coffea canephora. Leroy Thierry, De Bellis Fabien, Legnaté Hyacinthe, Kananura Edmund, Gonzales Gustavo, Pereira Luiz Filipe P., Andrade Alan Carvalho, Charmetant Pierre, Montagnon Christophe, Cubry Philippe, Marraccini Pierre, Pot David, De Kochko Alexandre. 2011. Tree Genetics and Genomes, 7 (4) : 781-798.

Genetic differentiation of wild and cultivated populations : Diversity of Coffea canephora Pierre in Uganda. Musoli Chungason Pascal, Cubry Philippe, Aluka P., Billot Claire, Dufour Magali, De Bellis Fabien, Pot David, Bieysse Daniel, Charrier André, Leroy Thierry. 2009. Genome (Ottawa), 52 : 634-646.

Diversity in coffee assessed with SSR markers: Structure of the genus Coffea and perspectives for breeding. Cubry Philippe, Musoli Chungason Pascal, Legnaté Hyacinthe, Pot David, De Bellis Fabien, Poncet Valérie, Anthony François, Dufour Magali, Leroy Thierry. 2008. Genome (Ottawa), 51 (1) : 50-63.

Neurospora from natural populations: Population genomics insights into the Life history of a model microbial Eukaryote. Gladieux Pierre, De Bellis Fabien, Hann-Soden Christopher, Svedberg Jesper, Johannesson Hanna, Taylor John W.. 2020. In : Statistical population genomics. Dutheil Julien Y. (ed.). Cham : Springer, 313-336. (Method in Molecular Biology, 2090) ISBN 978-1-07-160199-0

Managing and exploring large genotyping data with Gigwa. Sempere Guilhem, Petel Adrien, Rouard Mathieu, Larmande Pierre, Hueber Yann, Frouin Julien, De Bellis Fabien. 2019. . PAG. San Diego : PAG, Résumé, 2 p. Plant and Animal Genome Conference (PAG). 27, San Diego, États-Unis, 12 Janvier 2019/16 Janvier 2019.

High-throughput sequencing of cDNA shows that cv. Rubi and IAPAR59 of Coffea Arabica have different molecular response to water privation. Vidal Ramon Oliveira, Alekcevetch Jean Carlos, Leroy Thierry, De Bellis Fabien, Pot David, Rodrigues Gustavo Costa, Carazzolle Marcelo Falsarella, Pereira Gonçalo Amarante Guimarães, Andrade Alan Carvalho, Marraccini Pierre. 2013. In : Proceedings of the 24th International Conference on Coffee Science, San José, Costa Rica, 12th-16th November 2012 = Actes du 24ème Colloque scientifique international sur le café, San José, Costa Rica, 12-16 novembre 2012. ASIC. Paris : ASIC, 562-568. ISBN 978-2-900212-23-3 International Conference on Coffee Science. 24, San José, Costa Rica, 12 Novembre 2012/16 Novembre 2012.

Phenotyping and genotyping genetic resources of Coffea Arabica at IAPAR. FAO collection. Charmetant Pierre, Ferreira R., Andrade Giselly, Dos Santos M.A., Marraccini Pierre, Leroy Thierry, Pot David, De Bellis Fabien, Sera T., Protasio Pereira Luiz Filipe. 2013. In : Proceedings of the 24th International Conference on Coffee Science, San José, Costa Rica, 12th-16th November 2012 = Actes du 24ème Colloque scientifique international sur le café, San José, Costa Rica, 12-16 novembre 2012. ASIC. Paris : ASIC, 1419-1423. ISBN 978-2-900212-23-3 International Conference on Coffee Science. 24, San José, Costa Rica, 12 Novembre 2012/16 Novembre 2012.

High-throughput sequencing of cDNA extracted from meristems of Coffea arabica cv. Rubi and Iapar59 submitted to different water field conditions. Vidal Ramon Oliveira, Leroy Thierry, De Bellis Fabien, Pot David, Rodrigues Gustavo Costa, Pereira Gonçalo Amarante Guimarães, Andrade Alan Carvalho, Marraccini Pierre. 2011. In : Proceedings of the 23rd International Conference on Coffee Science; Bali, Indonesia, October 3-8, 2010 = Actes du 23ème Colloque scientifique international sur le café, Bali, Indonésie, 3-8 octobre 2010. ASIC. Paris : ASIC, 708-712. ISBN 978-2-900212-22-6 International Conference on Coffee Science. 23, Bali, Indonésie, 3 Octobre 2010/8 Octobre 2010.

Biochemical and nucleotide variability in the diterpene metabolism for Coffea canephora genotypes from Uganda. Durand Noël, De Bellis Fabien, Jourdan Isabelle, Manez Jean-Claude, Aluka P., Vieira Luiz Gonzaga Esteves, Ogwang J., Pot David, Marraccini Pierre, Leroy Thierry, Guyot Bernard. 2007. In : 21st International Conference on Coffee Science, Montpellier (France), 11th - 15th September 2006 = 21ème Colloque scientifique international sur le café ; 21. Internationales Wissenshaftliches Kolloquium über Kaffee ; 21e Coloquio Cientifico Internacional sobre el Café. ASIC. Montpellier : ASIC, 922-925. ISBN 2-900212-20-0 Colloque Scientifique International sur le Café. 21, Montpellier, France, 11 Septembre 2006/15 Septembre 2006.

Coffea spp. and Coffea canephora diversity evaluated with microsatellites and SNPs. Lessons from comparative analysis. Leroy Thierry, Cubry Philippe, Durand Noël, Dufour Magali, De Bellis Fabien, Jourdan Isabelle, Vieira Luiz Gonzaga Esteves, Musoli Chungason Pascal, Aluka P., Legnaté Hyacinthe, Marraccini Pierre, Pot David. 2007. In : 21st International Conference on Coffee Science, Montpellier (France), 11th - 15th September 2006 = 21ème Colloque scientifique international sur le café ; 21. Internationales Wissenshaftliches Kolloquium über Kaffee ; 21e Coloquio Cientifico Internacional sobre el Café. ASIC. Montpellier : ASIC, 827-834. ISBN 2-900212-20-0 Colloque Scientifique International sur le Café. 21, Montpellier, France, 11 Septembre 2006/15 Septembre 2006.

Fighting against coffee wilt disease : Uganda wild C. canephora genetic diversity and its usefulness. Musoli Chungason Pascal, Aluka P., Cubry Philippe, Dufour Magali, De Bellis Fabien, Nakendo Saleh, Nabaggala Agnès, Ogwang J., Kyetere Denis T., Leroy Thierry, Bieysse Daniel, Charrier André. 2007. In : 21st International Conference on Coffee Science, Montpellier (France), 11th - 15th September 2006 = 21ème Colloque scientifique international sur le café ; 21. Internationales Wissenshaftliches Kolloquium über Kaffee ; 21e Coloquio Cientifico Internacional sobre el Café. ASIC. Montpellier : ASIC, 835-843. ISBN 2-900212-20-0 Colloque Scientifique International sur le Café. 21, Montpellier, France, 11 Septembre 2006/15 Septembre 2006.

Genetic diversity in Coffea genus using microsatellites Loci. Cubry Philippe, Pot David, De Bellis Fabien, Musoli Chungason Pascal, Aluka P., Legnaté Hyacinthe, Dufour Magali, Leroy Thierry. 2007. In : 21st International Conference on Coffee Science, Montpellier (France), 11th - 15th September 2006 = 21ème Colloque scientifique international sur le café ; 21. Internationales Wissenshaftliches Kolloquium über Kaffee ; 21e Coloquio Cientifico Internacional sobre el Café. ASIC. Montpellier : ASIC, 916-921. ISBN 2-900212-20-0 Colloque Scientifique International sur le Café. 21, Montpellier, France, 11 Septembre 2006/15 Septembre 2006.

Genetic diversity within Coffea canephora germplasm maintained in RCI using SSR markers, results and future prospects. Cubry Philippe, Musoli Chungason Pascal, Legnaté Hyacinthe, Aluka P., Dufour Magali, Pot David, De Bellis Fabien, Leroy Thierry. 2007. In : 21st International Conference on Coffee Science, Montpellier (France), 11th - 15th September 2006 = 21ème Colloque scientifique international sur le café ; 21. Internationales Wissenshaftliches Kolloquium über Kaffee ; 21e Coloquio Cientifico Internacional sobre el Café. ASIC. Montpellier : ASIC, 912-915. ISBN 2-900212-20-0 Colloque Scientifique International sur le Café. 21, Montpellier, France, 11 Septembre 2006/15 Septembre 2006.

Genetic diversity, NIRS, fruit biochemical analyses and cup testing in cultivated Coffea canephora Pierre from different districts in Uganda. Aluka P., Musoli Chungason Pascal, Cubry Philippe, Davrieux Fabrice, Ribeyre Fabienne, Guyot Bernard, De Bellis Fabien, Pinard Fabrice, Kyetere Denis T., Ogwang J., Dufour Magali, Leroy Thierry. 2007. In : 21st International Conference on Coffee Science, Montpellier (France), 11th - 15th September 2006 = 21ème Colloque scientifique international sur le café ; 21. Internationales Wissenshaftliches Kolloquium über Kaffee ; 21e Coloquio Cientifico Internacional sobre el Café. ASIC. Montpellier : ASIC, 302-305. ISBN 2-900212-20-0 Colloque Scientifique International sur le Café. 21, Montpellier, France, 11 Septembre 2006/15 Septembre 2006.

Nucleotide diversity of genes involved in sucrose metabolism. Towards the identification of candidates genes controlling sucrose variability in Coffea sp. Pot David, Bouchet Sophie, Marraccini Pierre, De Bellis Fabien, Cubry Philippe, Jourdan Isabelle, Perreira Luiz Filipe Protasio, Vieira Luiz Gonzaga Esteves, Ferreira Lucia Pires, Musoli Chungason Pascal, Legnaté Hyacinthe, Leroy Thierry. 2007. In : 21st International Conference on Coffee Science, Montpellier (France), 11th - 15th September 2006 = 21ème Colloque scientifique international sur le café ; 21. Internationales Wissenshaftliches Kolloquium über Kaffee ; 21e Coloquio Cientifico Internacional sobre el Café. ASIC. Montpellier : ASIC, 679-686. ISBN 2-900212-20-0 Colloque Scientifique International sur le Café. 21, Montpellier, France, 11 Septembre 2006/15 Septembre 2006.

Introgression of stay-green Quantitative Trait Loci (QTL) alleles in elite sorghum varieties of Burkina Faso for post-flowering water stress tolerance using a marker-assisted back-cross strategy. Sory Amadou Jean-Baptiste, Pulcherie Kondombo clarisse, Pot David, De Bellis Fabien, Calatayud Caroline, Sawadogo Mahamadou. 2022. . ISRA, CERAAS, CIRAD, IRD. Dakar : ISRA, Résumé, 1 p. Interdrought Conference (Plant production in water limited environments). 7, Dakar, Sénégal, 29 Novembre 2022/2 Décembre 2022.

Nitrosorg : A research program dedicated to develop tools for improving grain quality (protein content and digestibility) and adapted to poultry feeding. Terrier Nancy, De Bellis Fabien, Berger Angélique, Calatayud Caroline, Rami Jean-François, Pot David, Mameri H., Morel Marie-Hélène, Recoules E., Trotereau Angélina, Gourichon D., Deveau Q., Jeanson P., Alcouffe Joël, Dufour Philippe, Melkior S., Pampouille E., Bonnal Laurent, Bastianelli Denis. 2021. . Toulouse : s.n., 1 p. European Congress of Sorghum. 3, Toulouse, France, 12 Octobre 2021/13 Octobre 2021.

From the territories to the genes: Developing sustainable multi-purpose sorghum value chains. Pot David, Rossini Laura, Luquet Delphine, Le Moigne Nicolas, Gazull Laurent, Trouche Gilles, Vilmus Ingrid, Roques Sandrine, Berger Angélique, Ricciuti Emeline, Desaint Henri, Clément Anne, Soutiras Armelle, Jaffuel Sylvie, Verdeil Jean-Luc, Vaksmann Michel, Rami Jean-François, Gatineau Frédéric, Dufayard Jean François, De Bellis Fabien, Trabanco Noemi, Soccalingame Lata, Corn Stephane, Carrere Hélène, Thomas Hélène Laurence, Bastianelli Denis, Bonnal Laurent, Jeanson P., Devaud Quentin, Alcouffe Joël, Fabre Françoise, Navard Patrick, Vo Loan T.T., Chupin Lucie, Thera Korothimi, Témé Niaba, Kouressy Mamoutou, Sartre Pascal, Courty Pierre-Emmanuel, Reymond Matthieu, Höfte Herman. 2017. . Dakar : s.n., 2 p. Conférence Intensification Durable 2017 : Biodiversité et ingénierie écologique pour une intensification durable de l'agriculture, Dakar, Sénégal, 24 Avril 2017/26 Avril 2017.

Molecular responses of coffee plants to drought stress : S04T04. Marraccini Pierre, Vieira Natalia Gomes, Duarte Karoline Estefani, Aquino S.O., Carneiro Fernanda A, Costa Tatiana S., Sujii Patricia. S, Vinecky Felipe, Alekcevetch Jean Carlos, Alves Gabriel Sergio Costa, Leroy Thierry, De Bellis Fabien, Ferrão Maria Amélia G., Damatta Fabio M., Pot David, Silva Vânia Aparecida, Rodrigues Geraldo Stachetti, Andrade Alan Carvalho. 2013. In : Biotic and Abiotic Stress Tolerance in Plants: the Challenge for the 21st Century : Book of abstracts of the CIBA 2013. Brasileiro Ana Christina Miranda (ed.), Fortes Ferreira Claudia (ed.), Fernandez Diana (ed.), Micheli Fabienne (ed.), Coelho Filho M.A. (ed.), Marraccini Pierre (ed.). EMBRAPA, UESC, CIRAD, IRD. Brasilia : EMBRAPA, Résumé, 29. Workshop on Biotic and Abiotic Stress Tolerance in Plants: the Challenge for the 21st Century, Ilhéus-Bahia, Brésil, 6 Novembre 2013/8 Novembre 2013.

Constuçao do perfil de espressao genica da resistencia a seca do café a partir de dados de sequenciamento de segunda geraçao. Vidal Ramon, Leroy Thierry, De Bellis Fabien, Pot David, Costa Rodrigues Gustavo, Guimarães Pereira Gonçalo Amarante, Carvalho Andrade Alan, Marraccini Pierre. 2011. In : Anais do VII Simposio de Pesquisa dos Cafés do Brasil, Araxa, Brasil, 22 a 25 de Agosto de 2011 : resumos expandidos. Ed. Afonso Junior, P.C. Brasilia : EMBRAPA, 4 p. Simposio de Pesquisa dos Cafés do Brasil. 7, Araxa, Brésil, 22 Août 2011/25 Août 2011.

Genetic structure of Coffea canephora Pierre species assessed by microsatellites markers. Cubry Philippe, Pot David, De Bellis Fabien, Legnaté Hyacinthe, Leroy Thierry. 2008. In : Abstracts of Plant and Animal Genomes XVIth Conference, San Diego, CA (USA), January 12-16, 2008. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 16, San Diego, États-Unis, 12 Janvier 2008/16 Janvier 2008.

Phylogeography and speciation genomics of the fire-associated filamentous fungus Neurospora discreta. De Bellis Fabien. 2017. Montpellier : Montpellier SupAgro, 60 p. Mémoire de master 2 : Sciences et technologies de l’agriculture, de l’alimentation et de l’environnement. Parcours Sélection et évolution des plantes méditerranéennes et tropicales (SEPMET) : Montpellier SupAgro