Parcourir par Auteur Cirad

Characterization of adaptation mechanisms in sorghum using a multireference back-cross nested association mapping design and envirotyping. Garin Vincent, Diallo Chiaka, Tekete Mohamed Lamine, Thera Mamoutou Korotimi, Guitton Baptiste, Dagno Karim, Diallo Abdoulaye, Kouressy Mamoutou, Leiser Willmar L., Rattunde Fred, Sissoko Ibrahima, Touré Aboubacar, Nébié Baloua, Samaké Moussa, Kholova Jana, Frouin Julien, Pot David, Vaksmann Michel, Weltzien Eva, Témé Niaba, Rami Jean-François. 2024. Genetics:iyae003, 17 p.

Genome scan of rice landrace populations collected across time revealed climate changes' selective footprints in the genes network regulating flowering time. Ahmadi Nourollah, Barry Mamadou Billo, Frouin Julien, de Navascués Miguel, Toure Mamadou Aminata. 2023. Rice, 16:15, 22 p.

Genomic selection for salinity tolerance in japonica rice. Bartholome Jérôme, Frouin Julien, Brottier Laurent, Cao Tuong-Vi, Boisnard Arnaud, Ahmadi Nourollah, Courtois Brigitte. 2023. PloS One, 18 (9):e0291833, 22 p.

Marker-assisted introgression of the salinity tolerance locus Saltol in temperate Japonica rice. Maré Caterina, Zampieri Elisa, Cavallaro Viviana, Frouin Julien, Grenier Cécile, Courtois Brigitte, Brottier Laurent, Tacconi Gianni, Finocchiaro Franca, Serrat Xavier, Nogués Salvador, Bundó Mireia, San Segundo Blanca, Negrini Noemi, Pesenti Michele, Sacchi Gian Attilio, Gavina Giacomo, Bovina Riccardo, Monaco Stefano, Tondelli Alessandro, Cattivelli Luigi, Valè Giampiero. 2023. Rice, 16:2, 18 p.

Optimization of multi-generation multi-location genomic prediction models for recurrent genomic selection in an upland rice population. De Verdal Hugues, Baertschi Cédric, Frouin Julien, Quintero Constanza, Ospina Yolima, Alvarez María Fernanda, Cao Tuong-Vi, Bartholome Jérôme, Grenier Cécile. 2023. Rice, 16:43, 18 p.

The genetic identity of neighboring plants in intraspecific mixtures modulates disease susceptibility of both wheat and rice. Pélissier Rémi, Ballini Elsa, Temple Coline, Ducasse Aurélie, Colombo Michel, Frouin Julien, Qin Xiaoping, Huang Huichuan, Jacques David, Fort Florian, Fréville Hélène, Violle Cyrille, Morel Jean-Benoit. 2023. PLoS Biology, 21 (9):e3002287, 13 p.

A major genetic locus in neighbours controls changes of gene expression and susceptibility in intraspecific rice mixtures. Pélissier Rémi, Ducasse Aurélie, Ballini Elsa, Frouin Julien, Violle Cyrille, Morel Jean-Benoit. 2023. New Phytologist, 238 (2) : 835-844.

Differential gene expression in Eucalyptus clones in response to nutrient deficiency. Rossini Bruno Cesar, Bouvet Jean-Marc, Frouin Julien, Guerrini Iraê Amaral, Moreira de Freitas Talitha Casella, Ribeiro da Silva Magali, Bouillet Jean-Pierre, Laclau Jean-Paul, Marino Celso Luis. 2022. Tree Genetics and Genomes, 18:14, 17 p.

High-frequency synthetic apomixis in hybrid rice. Vernet Aurore, Meynard Donaldo, Lian Qichao, Mieulet Delphine, Gibert Olivier, Bissah Matilda Ntowa, Rivallan Ronan, Autran Daphné, Leblanc Olivier, Meunier Anne Cecile, Frouin Julien, Taillebois James E., Shankle Kyle, Khanday Imtiyaz, Mercier Raphael, Sundaresan Venkatesan, Guiderdoni Emmanuel. 2022. Nature Communications, 13:7963, 13 p.

Integrative approach for precise genotyping and transcriptomics of salt tolerant introgression rice lines. Bundó Mireia, Martín-Cardoso Héctor, Pesenti Michele, Gomez-Ariza Jorge, Castillo Laia, Frouin Julien, Serrat Xavier, Nogués Salvador, Courtois Brigitte, Grenier Cécile, Sacchi Gian Attilio, San Segundo Blanca. 2022. Frontiers in Plant Science, 12:797141, 20 p.

Manipulation of meiotic recombination to hasten crop improvement. Fayos Ian, Frouin Julien, Meynard Donaldo, Vernet Aurore, Herbert Leo, Guiderdoni Emmanuel. 2022. Biology, 11 (3), n.spéc. Crop Improvement Now and Beyond:369, 15 p.

Breeding for nitrogen use efficiency: Lessons from genomic prediction experiments based on a broad-based population of upland rice. Rakotomalala Joël, Vom Brocke Kirsten, Frouin Julien, Pot David, Rabekijana Ravonantenaina Rhodia, Ramanantsoanirina Alain, Ratsimiala Ramonta Isabelle, Cao Tuong-Vi. 2021. Rice Research: Open Access, 9 (9):1000264, 26 p.

Evolutionary processes involved in the emergence and expansion of an atypical O. sativa group in Madagascar. Ahmadi Nourollah, Ramanantsoanirina Alain, Santos João D., Frouin Julien, Radanielina Tendro. 2021. Rice, 14 (1), 18 p.

Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen. Frontini Mathias, Boisnard Arnaud, Frouin Julien, Ouikene Malika, Morel Jean-Benoit, Ballini Elsa. 2021. BMC Plant Biology, 21 (1):99, 12 p.

Genome-wide association study of nitrogen use efficiency and agronomic traits in upland rice. Rakotoson Tatiana, Dusserre Julie, Letourmy Philippe, Frouin Julien, Ratsimiala Ramonta Isabelle, Rakotoarisoa Noronirina Victorine, Cao Tuong-Vi, Vom Brocke Kirsten, Ramanantsoanirina Alain, Ahmadi Nourollah, Raboin Louis-Marie. 2021. Rice Science, 28 (4) : 379-390.

Genomic prediction of arsenic tolerance and grain yield in rice: Contribution of trait-specific markers and multi-environment models. Ahmadi Nourollah, Cao Tuong-Vi, Frouin Julien, Norton Gareth J., Price Adam H.. 2021. Rice Science, 28 (3) : 268-278.

Impact of early genomic prediction for recurrent selection in an upland rice synthetic population. Baertschi Cédric, Cao Tuong-Vi, Bartholome Jérôme, Ospina Yolima, Quintero Constanza, Frouin Julien, Bouvet Jean-Marc, Grenier Cécile. 2021. G3 - Genes Genomes Genetics, 11 (12):jkab320, 16 p.

Emergence of southern rice black-streaked dwarf virus in the centuries-old Chinese Yuanyang agrosystem of rice landraces. Alonso Pascal, Gladieux Pierre, Moubset Oumaima, Shih Pei-Jung, Mournet Pierre, Frouin Julien, Blondin Laurence, Ferdinand Romain, Fernandez Emmanuel, Julian Charlotte, Filloux Denis, Adreit Henri, Fournier Elisabeth, Ducasse Aurélie, Grosbois Vladimir, Morel Jean-Benoit, Huang Huichuan, Jin Baihui, He Xiahong, Martin Darren Patrick, Vernière Christian, Roumagnac Philippe. 2019. Viruses, 11 (11):985, 13 p.

Genomic prediction offers the most effective marker assisted breeding approach for ability to prevent arsenic accumulation in rice grains. Frouin Julien, Labeyrie Axel, Boisnard Arnaud, Sacchi Gian Attilio, Ahmadi Nourollah. 2019. PloS One, 14 (6):e0217516, 22 p.

Gigwa v2—Extended and improved genotype investigator. Sempere Guilhem, Petel Adrien, Rouard Mathieu, Frouin Julien, Hueber Yann, De Bellis Fabien, Larmande Pierre. 2019. GigaScience, 8 (5), 9 p.

Le rhizoscope. Son utilisation pour des études génétiques du système racinaire chez le riz. Audebert Alain, Dardou Audrey, Frouin Julien, Courtois Brigitte. 2019. Le Sélectionneur Français (70) : 39-45. Journée Scientifique ASF, Versailles, France, 7 Février 2019.

Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice. Bhandari Aditi, Bartholome Jérôme, Cao-Hamadou Tuong-Vi, Kumari Nilima, Frouin Julien, Kumar Arvind, Ahmadi Nourollah. 2019. PloS One, 14 (5), e0208871, 21 p.

Tolerance to mild salinity stress in japonica rice: A genome-wide association mapping study highlights calcium signaling and metabolism genes. Frouin Julien, Languillaume Antoine, Mas Justine, Mieulet Delphine, Boisnard Arnaud, Labeyrie Axel, Bettembourg Mathilde, Bureau Charlotte, Lorenzini Eve, Portefaix Murielle, Turquay Patricia, Vernet Aurore, Périn Christophe, Ahmadi Nourollah, Courtois Brigitte. 2018. PloS One, 13 (1):e0190964, 27 p.

Genome-wide association analysis for heat tolerance at flowering detected a large set of genes involved in adaptation to thermal and other stresses. Lafarge Tanguy, Bueno Crisanta Sunio, Frouin Julien, Jacquin Laval, Courtois Brigitte, Ahmadi Nourollah. 2017. PloS One, 12 (2):e0171254, 27 p.

Genome-wide association mapping for root cone angle in rice. Bettembourg Mathilde, Dardou Audrey, Audebert Alain, Thomas Emilie, Frouin Julien, Guiderdoni Emmanuel, Ahmadi Nourollah, Perin Christophe, Diévart Anne, Courtois Brigitte. 2017. Rice, 10:45, 17 p.

Association mapping of resistance to rice blast in upland field conditions. Raboin Louis-Marie, Ballini Elsa, Tharreau Didier, Ramanantsoanirina Alain, Frouin Julien, Courtois Brigitte, Ahmadi Nourollah. 2016. Rice, 9 (59), 12 p.

Characterization of a panel of Vietnamese rice varieties using DArT and SNP markers for association mapping purposes. Phung Nhung Thi Phuong, Mai Chung Duc, Mournet Pierre, Frouin Julien, Droc Gaëtan, Ta Nhung Kim, Jouannic Stefan, Thi Loan, Do Vinh Nang, Gantet Pascal, Courtois Brigitte. 2014. BMC Plant Biology, 14 (371), 16 p.

Positional cloning of the rice male sterility gene ms-IR36, widely used in the inter-crossing phase of recurrent selection schemes. Frouin Julien, Filloux Denis, Taillebois James E., Grenier Cécile, Montes Fabienne, De Lamotte Frédéric, Verdeil Jean-Luc, Courtois Brigitte, Ahmadi Nourollah. 2014. Molecular Breeding, 33 (3) : 555-567.

Création variétale pour la riziculture pluviale d'altitude à Madagascar : bilan de 25 années de sélection. Raboin Louis-Marie, Ramanantsoanirina Alain, Dzido Jean-Luc, Frouin Julien, Radanielina Tendro, Tharreau Didier, Dusserre Julie, Ahmadi Nourollah. 2013. Cahiers Agricultures, 22 (5) : 450-458.

Genome-wide association mapping of root traits in a japonica rice panel. Courtois Brigitte, Audebert Alain, Dardou Audrey, Roques Sandrine, Ghneim Thaura, Droc Gaëtan, Frouin Julien, Rouan Lauriane, Gozé Eric, Kilian Andrzej, Ahmadi Nourollah, Dingkuhn Michaël. 2013. PloS One, 8 (11):e78037, 18 p.

The original features of rice (Oryza sativa L.) genetic diversity and the importance of within-variety diversity in the highlands of Madagascar build a strong case for in situ conservation. Radanielina Tendro, Ramanantsoanirina Alain, Raboin Louis-Marie, Frouin Julien, Perrier Xavier, Brabant Philippe, Ahmadi Nourollah. 2013. Genetic Resources and Crop Evolution, 60 (1) : 311-323.

Genetic diversity and population structure in a european collection of rice. Courtois Brigitte, Frouin Julien, Greco Rafaella, Bruschi Gianluca, Droc Gaëtan, Hamelin Chantal, Ruiz Manuel, Clément Guy, Evrard Jean-Charles, Van Coppenole Sylvie, Katsantonis Dimitrios, Oliveira Margarida, Negrão Sonia, Matos Celina, Cavigiolo Stefano, Lupotto Elisabetta, Piffanelli Pietro, Ahmadi Nourollah. 2012. Crop Science, 52 (4) : 1663-1675.

Specific patterns of genetic diversity among aromatic rice varieties in Myanmar. Myint Khin M., Courtois Brigitte, Risterucci Ange-Marie, Frouin Julien, Soe Khin, Thet Khin M., Vanavichit Apichart, Glaszmann Jean-Christophe. 2012. Rice, 5 (20), 13 p.

Molecular characterization of the European rice collection in view of association mapping. Courtois Brigitte, Greco Rafaella, Bruschi Gianluca, Frouin Julien, Ahmadi Nourollah, Droc Gaëtan, Hamelin Chantal, Ruiz Manuel, Evrard Jean-Charles, Katsantonis Dimitrios, Oliveira Margarida, Negrão Sonia, Cavigiolo Stefano, Lupotto Elisabetta, Piffanelli Pietro. 2011. Plant Genetic Resources, 9 (2) : 233-235.

Targeted association analysis identified japonica rice varieties achieving Na+/K+ homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra. Ahmadi Nourollah, Negrão Sonia, Katsantonis Dimitrios, Frouin Julien, Ploux J., Letourmy Philippe, Droc Gaëtan, Babo P., Trindade H., Bruschi Gianluca, Greco Rafaella, Oliveira Margarida, Piffanelli Pietro, Courtois Brigitte. 2011. Theoretical and Applied Genetics, 123 (6) : 881-895.

Rice root genetic architecture: Meta-analysis from a drought QTL database. Courtois Brigitte, Ahmadi Nourollah, Khowaja Farhkanda S., Price Adam H., Rami Jean-François, Frouin Julien, Hamelin Chantal, Ruiz Manuel. 2009. Rice, 2 (2-3) : 115-128.

Analysis of the sexual reproduction and genetic diversity of Magnaporthe grisea with microsatellite (MS) markers. Shen Ying, Kaye Claudia, Frouin Julien, Deng Yi-Wen, Tharreau Didier. 2004. Scientia Agricultura Sinica, 37 (2) : 215-221.

Resistance evaluation of some chinese leading rice maintainer, restorer lines and their hybrids to Magnaporthe grisea. Zhu Xu-Dong, Shen Ying, Adreit Henri, Frouin Julien, Tharreau Didier. 2004. Rice Science, 11 (3) : 101-105.

The perfect stage and SSR analysis of Magnaporthe grisea in the Yanxi Blast Nursery, Hunan Province. Frouin Julien, Kaye Claudia, Nottéghem Jean-Loup, Tharreau Didier. 2004. Chinese Journal of Rice Science, 18 (3) : 262-268.

Managing and exploring large genotyping data with Gigwa. Sempere Guilhem, Petel Adrien, Rouard Mathieu, Larmande Pierre, Hueber Yann, Frouin Julien, De Bellis Fabien. 2019. . PAG. San Diego : PAG, Résumé, 2 p. Plant and Animal Genome Conference (PAG). 27, San Diego, États-Unis, 12 Janvier 2019/16 Janvier 2019.

Characterization of adaptation mechanisms in sorghum using a multi-reference back-cross nested association mapping design and envirotyping. Garin Vincent, Diallo Chiaka, Tekete Mohamed Lamine, Thera Korothimi, Guitton Baptiste, Dagno Karim, Diallo Abdoulaye G., Kouressy Mamoutou, Leiser Willmar L., Rattunde Fred, Sissoko Ibrahima, Touré Aboubacar, Nebie Baloua, Samaké Moussa, Kholova Jana, Frouin Julien, Pot David, Vaksmann Michel, Weltzien Eva, Témé Niaba, Rami Jean-François. 2023. In : Sorghum in the 21th century: Resiliency and Sustainability in the Face of Climate Change. Book of Abstracts. CIRAD, Kansas State University, Sorghum International Development, IRD, CERAAS. Montpellier : CIRAD-Kansas State University, Résumé, p. 114. Sorghum in the 21st Century, Global Sorghum Conference, Montpellier, France, 5 Juin 2023/9 Juin 2023.

Mapping race differentiation along the cultivated sorghum genome. Mendy Jovanie, Beye Abdoulaye, Frouin Julien, De Bellis Fabien, Burgarella Concetta, Pot David, Sempere Guilhem, Billot Claire, Leclerc Christian, Rami Jean-François, Deu Monique, Gilabert Aude, Glaszmann Jean-Christophe. 2023. In : Sorghum in the 21st century: Resiliency and sustainability in the face of climate change. Book of abstracts. CIRAD, Kansas State University, Collaborative Research on Sorghum and Millet, SorghumID, IRD, CERAAS. Montpellier : CIRAD-Kansas State University, Résumé, p. 250. Sorghum in the 21st Century, Global Sorghum Conference, Montpellier, France, 5 Juin 2023/9 Juin 2023.

Performance of phenomic selection in sorghum: Exploring population structure and GXE effects on prediction accuracy. Salas Nicolas, Garin Vincent, Thera Korothimi, Diallo Chiaka, Tekete Mohamed Lamine, Guitton Baptiste, Dagno Karim, Diallo Abdoulaye, Kouressy Mamoutou, Leiser Willmar L., Rattunde Fred, Sissoko Ibrahima, Touré Aboubacar, Baloua Nébié, Samaké Moussa, Kholova Jana, Frouin Julien, Vaksmann Michel, Weltzien Eva, Témé Niaba, Rami Jean-François, Segura Vincent, Pot David. 2023. In : Sorghum in the 21st century: Resiliency and sustainability in the face of climate change. Book of abstracts. CIRAD, Kansas State University, Collaborative Research on Sorghum and Millet, SorghumID, IRD, CERAAS. Montpellier : CIRAD-Kansas State University, Résumé, p. 115. Sorghum in the 21st Century, Global Sorghum Conference, Montpellier, France, 5 Juin 2023/9 Juin 2023.

Eucalyptus response to nutritional stress based on gene expression analyses: preliminary steps for defining ideotype. Bouvet Jean-Marc, Frouin Julien, Rossini Bruno Cesar, Guerrini Iraê Amaral, De Freitas Talitha Moreira, Bouillet Jean-Pierre, Laclau Jean-Paul, Marino Celso. 2018. In : Eucalyptus 2018: Managing Eucalyptus plantation under global changes. Abstracts book. CIRAD, IUFRO, MUSE. Montpellier : CIRAD, Résumé, p. 130. ISBN 978-2-87614-743-0 Eucalyptus 2018, Montpellier, France, 17 Septembre 2018/21 Septembre 2018.

Marker-assisted backcrossing for introgression of the saltol locus conferring salt stress tolerance in rice. [PE0856]. Maré Caterina, Zampieri Elisa, Tondelli Alessandro, Cavallaro Viviana, Finocchiaro Franca, Tacconi Gianni, Monaco Stefano, Canella Marco, Gennaro Massimo, Courtois Brigitte, Frouin Julien, Samper Patrick, Brottier Laurent, Cattivelli Luigi, Valè Giampiero. 2020. In : Abstracts workshops of the PAG XXVIII. San Diego : PAG, Résumé, 375-376. Plant and Animal Genome. 28, San Diego, États-Unis, 11 Janvier 2020/15 Janvier 2020.

Phenotyping root architectural traits of a tropical japonica rice panel in view of association mapping. Audebert Alain, Roques Sandrine, Dardou Audrey, Rouan Lauriane, Gozé Eric, Frouin Julien, Ahmadi Nourollah, Oura Jean-Thierry, Ghneim Thaura, Courtois Brigitte. 2012. In : 8th Symposium International Society of Root Research (ISRR 2012). ISRR, Dundee, United Kingdom, 26-29 June 2012. s.l. : s.n., Diaporama, 1 p. Symposium Society of Root Research. 8, Dundee, Royaume-Uni, 26 Juin 2012/29 Juin 2012.

Rice drought tolerance QTLs: Meta-analysis improves resolution to a few candidate gene level. Courtois Brigitte, Ahmadi Nourollah, Khowaja Farhkanda S., Price Adam H., Rami Jean-François, Frouin Julien, Hamelin Chantal, Ruiz Manuel. 2009. In : 6th International Rice Genetics Symposium, Manila, Philippines, 06-19 November 2009. s.l. : s.n., 1 p. International Rice Genetics Symposium. 6, Manille, Philippines, 6 Novembre 2009/19 Novembre 2009.

Targeted association analysis for tolerance to salinity within the European core collection of temperate Japonica rice. Ahmadi Nourollah, Courtois Brigitte, Negrão Sonia, Frouin Julien, Babo P., Greco Rafaella, Bruschi Gianluca, Vancoppenolle Sylvie, Katsantonis Dimitrios, Oliveira Margarida, Piffanelli Pietro. 2009. In : 6th International Rice Genetics Symposium, Manila, Philippines, 06-19 November 2009. s.l. : s.n., 1 p. International Rice Genetics Symposium. 6, Manille, Philippines, 6 Novembre 2009/19 Novembre 2009.

Patterns of rice diversity from SNP delineated the origin of the atypical O. sativa group in Madagascar from intermediary forms of the Indian sub-continent. Ahmadi Nourollah, Billot Claire, Droc Gaëtan, Brunel Dominique, Frouin Julien, Ramanantsoanirina Alain, McNally Kenneth L., Courtois Brigitte, Glaszmann Jean-Christophe. 2013. In : 7th International Rice Genetics Symposium (RG7), Manila, Philippines, 5-8 November 2013. International Rice Research Institute. s.l. : s.n., Résumé, 1 p. International Rice Genetics Symposium. 7, Manille, Philippines, 5 Novembre 2013/8 Novembre 2013.

Targeted association analysis for tolerance to salinity in rice using SSR markers. Negrão Sonia, Courtois Brigitte, Ahmadi Nourollah, Babo P., Frouin Julien, Greco Rafaella, Bruschi Gianluca, Vancoppenolle Sylvie, Katsantonis Dimitrios, Lupotto Elisabetta, Oliveira Margarida, Piffanelli Pietro. 2010. In : Final program and abstracts of the 2nd International Symposium on Genomics of Plant Genetic Resources, Bologna, Italy, 24-27 April 2010. Rome : Bioversity International, Résumé, 109. International Symposium on Genomics of Plant Genetic Resources. 2, Bologne, Italie, 24 Avril 2010/27 Avril 2010.

Meta-analysis of QTLs involved in rice root development using a QTL database. Ahmadi Nourollah, Courtois Brigitte, Khowaja Farhkanda S., Perice A., Frouin Julien, Hamelin Chantal, Ruiz Manuel. 2007. In : International Symposium Root Biology and MAS Strategies for Drought Resistance Imporvement in Rice, Bangalore, India, September 26-29, 2007. s.l. : s.n., Résumé, 1 p. International Symposium Root Biology and MAS Strategies for Drought Resistance Imporvement in Rice, Bangalore, Inde, 26 Septembre 2007/29 Septembre 2007.