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Nombre de documents : 75.

Article de revue

Comparison of loop-mediated isothermal amplification, polymerase chain reaction, and selective isolation assays for detection of Xanthomonas albilineans from sugarcane. Duarte Dias Vanessa, Fernandez Emmanuel, Cunha Marcos G., Pieretti Isabelle, Hincapie Martha, Roumagnac Philippe, Comstock Jack C., Rott Philippe. 2018. Tropical Plant Pathology, 9 p.
https://doi.org/10.1007/s40858-018-0216-2
Article en libre accès
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Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale. Bernardo Pauline, Charles-Dominique Tristan, Barakat Mohamed, Ortet Philippe, Fernandez Emmanuel, Filloux Denis, Hartnady Penelope, Rebelo Tony A., Cousins Stephen, Mesleard François, Cohez Damien, Yaverkovski Nicole, Varsani Arvind, Harkins Gordon William, Peterschmitt Michel, Malmstrom Carolyn, Martin Darren Patrick, Roumagnac Philippe. 2018. ISME Journal, 12 : 174-184.
http://dx.doi.org/10.1038/ismej.2017.155
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Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and Réunion. Boukari Wardatou, Alcala-Briseño Ricardo I., Kraberger Simona, Fernandez Emmanuel, Filloux Denis, Daugrois Jean-Heinrich, Comstock Jack C., Lett Jean-Michel, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe, Polston Jane E., Rott Philippe. 2017. Virology Journal, 14, 8 p.
http://dx.doi.org/10.1186/s12985-017-0810-9
Article en libre accès
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Metagenomic-based screening and molecular characterization of cowpea-infecting viruses in Burkina Faso. Palanga Essowé, Filloux Denis, Martin Darren Patrick, Fernandez Emmanuel, Gargani Daniel, Ferdinand Romain, Zabré Jean, Bouda Zakaria, Neya Bouma, Sawadogo Mahamadou, Traoré Oumar, Peterschmitt Michel, Roumagnac Philippe. 2016. PloS One, 11 (10), 21 p.
http://dx.doi.org/10.1371/journal.pone.0165188
Article en libre accès
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Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa. Bernardo Pauline, Muhire Brejnev, François Sarah, Deshoux Maëlle, Hartnady Penelope, Farkas Kata, Kraberger Simona, Filloux Denis, Fernandez Emmanuel, Galzi Serge, Ferdinand Romain, Granier Martine, Marais Armelle, Monge Blasco Pablo, Candresse Thierry, Escriu Fernando, Varsani Arvind, Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe. 2016. Virology, 493 : 142-153.
http://dx.doi.org/10.1016/j.virol.2016.03.016
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Prevalence of Sugarcane yellow leaf virus in sugarcane producing regions in Kenya revealed by reverse transcription loop-mediated isothermal amplification method. Amata Ruth Lodenyi, Fernandez Emmanuel, Filloux Denis, Martin Darren Patrick, Rott Philippe, Roumagnac Philippe. 2016. Plant Disease, 100 (2) : 260-268.
http://dx.doi.org/10.1094/PDIS-05-15-0602-RE
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Alfalfa leaf curl virus: an aphid-transmitted geminivirus. Roumagnac Philippe, Granier Martine, Bernardo Pauline, Deshoux Maëlle, Ferdinand Romain, Galzi Serge, Fernandez Emmanuel, Julian Charlotte, Abt Isabelle, Filloux Denis, Mesleard François, Varsani Arvind, Blanc Stéphane, Martin Darren Patrick, Peterschmitt Michel. 2015. Journal of Virology, 89 (18) : 9683-9688.
http://dx.doi.org/10.1128/JVI.00453-15
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Visacane: An innovative quarantine tool for the exchange of pest and disease-free sugarcane germplasm. Guinet-Brial Isabelle, Girard Jean-Claude, Roumagnac Philippe, Daugrois Jean-Heinrich, Fernandez Emmanuel, Rott Philippe. 2015. International Sugar Journal : 20-27.
https://www.internationalsugarjournal.com/paper/visacane-an-innovative-quarantine-tool-for-the-exchange-of-pest-and-disease-free-sugarcane-germplasm/
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Appearances can be deceptive: Revealing a hidden viral infection with deep sequencing in a plant quarantine Context. Candresse Thierry, Filloux Denis, Muhire Brejnev, Julian Charlotte, Galzi Serge, Fort Guillaume, Bernardo Pauline, Daugrois Jean-Heinrich, Fernandez Emmanuel, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2014. PloS One, 9 (7), 13 p.
http://dx.doi.org/10.1371/journal.pone.0102945
Article en libre accès
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Identification and characterisation of a highly divergent geminivirus: Evolutionary and taxonomic implications. Bernardo Pauline, Golden Michael, Akram Mohammad, Naimuddin, Nadarajan Nagaswamy, Fernandez Emmanuel, Granier Martine, Rebelo Anthony, Peterschmitt Michel, Martin Darren Patrick, Roumagnac Philippe. 2013. Virus Research, 177 (1) : 35-45.
http://dx.doi.org/10.1016/j.virusres.2013.07.006
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Genetic diversity of sugarcane yellow leaf virus in a sugarcane selection plot in Guadeloupe (FWI). Girard Jean-Claude, Fernandez Emmanuel, Daugrois Jean-Heinrich, Roques Danièle, Roumagnac Philippe, Rott Philippe. 2012. International Sugar Journal, 114 (1358) : 96-100.
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Variation in virus populations and growth characteristics of two sugarcane cultivars naturally infected by Sugarcane yellow leaf virus in different geographical locations. Abu Ahmad Youssef, Girard Jean-Claude, Fernandez Emmanuel, Pauquet Jérôme, Lockhart Benham E.L., Letourmy Philippe, Rott Philippe. 2007. Plant Pathology, 56 (5) : 743-754.
http://dx.doi.org/10.1111/j.1365-3059.2007.01617.x
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First report of Leifsonia xyli subsp. xyli, causal agent of ratoon stunting of sugarcane, in Jamaica. Falloon T., Henry E., Davis Michael J., Fernandez Emmanuel, Girard Jean-Claude, Rott Philippe, Daugrois Jean-Heinrich. 2006. Plant Disease, 90 (2) : 245.
http://dx.doi.org/10.1094/PD-90-0245B

Le foreur de la canne à sucre. Mise en place d'une lutte biologique à l'aide de trichogrammes à la Réunion. Tabone Elisabeth, Goebel François-Régis, Lezcano N., Fernandez Emmanuel. 2002. Phytoma-La Défense des Végétaux (553) : 32-35.

Biological control of the sugarcane stem borer Chilo sacchariphagus (Lep: Pyralidae) in Reunion Island. Current and future studies on the use of Trichogramma spp. Goebel François-Régis, Tabone Elisabeth, Rochat Jacques, Fernandez Emmanuel. 2001. Proceedings of the Annual Congress of the South African Sugar Technologists' Association, 75 : 171-174.

Integrated control of the sugarcane spotted stalk borer Chilo sacchariphagus (Lep:Pyralidae) in Reunion Island. Rochat Jacques, Goebel François-Régis, Tabone Elisabeth, Begue Léon Jean-Marie, Fernandez Emmanuel, Tibere Richard, Gauvin Jean-Claude, Vercambre Bernard. 2001. Proceedings of the Annual Congress of the South African Sugar Technologists' Association, 75 : 253-254.

Dégâts et pertes de rendement sur la canne à sucre dus au foreur Chilo sacchariphagus (Bojer) à l'île de la Réunion (Lep.: pyralidae). Goebel François-Régis, Fernandez Emmanuel, Tibere Richard, Alauzet Claude. 1999. Annales de la Société Entomologique de France, 35, suppl. : 476-481.

Prédation par Pheidole megacephala (Fabricius) (Hym. : Formicidae) des oeufs de Chilo sacchariphagus (Bojer) (Lep. : Pyralidae), foreur de la canne à sucre à l'île de la Réunion. Goebel François-Régis, Fernandez Emmanuel, Begue Léon Jean-Marie, Alauzet Claude. 1999. Annales de la Société Entomologique de France, 35 : 440-442.

Le programme de recherche sur les mouches des fruits dans l'Océan indien. Quilici Serge, Vayssières Jean-François, Hurtrel Béatrice, Brévault Thierry, Barbet A., Fernandez Emmanuel, Franck Antoine, Simiand Christophe. 1997. Magazine CIRAD Réunion (6) : 2-3.

Chapitre d'ouvrage

Viral metagenomics approaches for high-resolution screening of multiplexed arthropod and plant viral communities. François Sarah, Filloux Denis, Fernandez Emmanuel, Ogliastro Mylène, Roumagnac Philippe. 2018. In : Viral metagenomics: methods and protocols. Pantaleo Vitantonio (ed.), Chiumenti Michela (ed.). New York : Humana Press, 77-95. (Methods in Molecular Biology, 1746, 1746) ISBN 978-1-4939-7682-9
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Mosaic diseases in sugarcane. Rott Philippe, Fernandez Emmanuel, Girard Jean-Claude. 2008. In : Characterization, diagnosis and management of plant viruses. Industrial crops. Rao Govind P. (ed.), Paul Khurana S.M. (ed.), Lenardon Sergio L. (ed.). Houston : Studium Press LLC, 99-110. (Plant pathogens series, 1) ISBN 1-933699-31-0

Communication avec actes

Metagenomics-based exploration of the genetic diversity of SCYLV in the sugarcane collection of Guadeloupe. Fernandez Emmanuel, Filloux Denis, Julian Charlotte, Lubin Adjanoh Nadia, Teycheney Pierre-Yves, Candresse Thierry, Roumagnac Philippe, Daugrois Jean-Heinrich. 2016. In : Building bridges between disciplines for sustainable management of plant virus diseases. INRA, Université d'Avignon. Avignon : INRA, Résumé, p. 83.
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Visacane, an overview of the distribution of disease-free sugarcane varieties for the last 10 years. Guinet-Brial Isabelle, Bousquet Jean-François, Darroussat Marie-Josée, Fernandez Emmanuel, Daugrois Jean-Heinrich. 2016. In : Proceedings of the 29th Congress of the International Society of Sugar Cane Technologists. Chiang Mai : ISSCT, 58-62.
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Detection of Xanthomonas albilineans in sugarcane stalks using lamp PCR and selective isolation assays. Duarte Dias Vanessa, Fernandez Emmanuel, Da Cunha M.G., Roumagnac Philippe, Comstock Jack C., Rott Philippe. 2015. In : Book of abstracts. XI Pathology and IX Entomology ISSCT joint Workshop. FIADE. Guayaquil : FIADE, Résumé, 26.
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Impact of NGS-based diagnosis on sugarcane quarantine processes. Daugrois Jean-Heinrich, Darroussat Marie-Josée, Fenouillet Catherine, Ferdinand Romain, Fernandez Emmanuel, Filloux Denis, Galzi Serge, Guinet-Brial Isabelle, Julian Charlotte, Lubin Nadia, Roques Danièle, Roumagnac Philippe. 2015. In : Book of abstracts. XI Pathology and IX Entomology ISSCT joint Workshop. FIADE. Guayaquil : FIADE, Résumé, 17.
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Visacane, an up to date Cirad quarantine tool for exchanging disease-free sugarcane varieties in compliance with property rights. [BO24]. Guinet-Brial Isabelle, Daugrois Jean-Heinrich, Bousquet Jean-François, Darroussat Marie-Josée, Fernandez Emmanuel, Ferdinand Romain. 2015. In : Pushing the frontiers of sugarcane improvement. ISSCT. Saint-Gilles : ISSCT, Résumé, 28.
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Geo-metagenomics: deciphering the spatial biodiversity of plant viruses associated with the unique fynbos ecosystem of Southern Africa and its neighbouring agro-ecosystem. Bernardo Pauline, Ortet Philippe, Barakat Mohamed, Rebelo Anthony, Cousins Stephen, Fernandez Emmanuel, Peterschmitt Michel, Filloux Denis, Varsani Arvind, Martin Darren Patrick, Roumagnac Philippe. 2013. In : EMBO Workshop Green Viruses, from Gene to Landscape, 7-11 September 2013, Hyères-les-Palmiers, France : programme and abstracts book. CNRS, UMR BGPI. s.l. : s.n., Résumé, 43.
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Visacane: an innovative quarantine tool for the exchange of pest and disease-free sugarcane germplasm. Guinet-Brial Isabelle, Girard Jean-Claude, Roumagnac Philippe, Daugrois Jean-Heinrich, Fernandez Emmanuel, Rott Philippe. 2013. In : Proceedings of the XXVIII ISSCT (International Society of Sugar Cane Technologists) Congress, São Paulo, Brazil 2013 june 24-27. Brazilian Society of Sugar and Ethanol Technologists (STAB) ; XXVIIIth ISSCT Organising Committee. s.l. : D.M. HOGARTH, Résumé, 190. ISBN 978-0-949678-27-0
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Status of sugarcane yellow leaf virus in commercial fields and risk assessment in Guadeloupe. Edon-Jock Carine, Rott Philippe, Vaillant Jean, Fernandez Emmanuel, Girard Jean-Claude, Daugrois Jean-Heinrich. 2007. In : ISSCT 2007: 26th Congress of the International Society of Sugar Cane Technologists Congress, 29 juillet - 2 août 2007, Durban, South Africa. ISSCT. Réduit : ISSCT, 995-1004. ISBN 1-920017-01-1
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Predation and varietal resistance as important components of integrated protection of the sugarcane stemborer Chilo sacchariphagus (Bojer) (Lepidoptera : Pyralidae) in Réunion. Goebel François-Régis, Fernandez Emmanuel, Beugue J.M., Tibere Richard, Alauzet Claude. 2000. In : Sugarcane pest management in the new millennium. Allsopp P.G. (ed.), Suasa ard W. (ed.). ISSCT. Indooroopilly : ISSCT, 51-59. ISBN 0-949678-03-1

Protection intégrée sur la canne à sucre à la Réunion : le cas de Chilo sacchariphagus Boj. (Lep., Pyralidae), foreur des tiges. Goebel François-Régis, Fernandez Emmanuel, Begue Léon Jean-Marie, Tibere Richard, Alauzet Claude. 1999. In : Cinquième conférence internationale sur les ravageurs en agriculture = Fifth International conference on pests in agriculture. ANPP, Languedoc-Roussillon-Conseil régional, Hérault-Conseil général, ENSAM, INRA, CTA. Paris : ANPP, 819-826. (Annales) ISBN 2-905550-83-X

Communication par affiche

Relationship between rice genetic diversity and microbiota composition in traditional Yuanyang rice terraces of China. P1. Filloux Denis, Ferdinand Romain, Fernandez Emmanuel, Huang Huichuan, Jin Baihui, He Xiahong, Ali S., Vernière Christian, Roumagnac Philippe. 2018. In : Book of abstract Pathobiome 2018. INRA. Ajaccio : INRA, Résumé, 32.
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Metagenomics-based discovery and molecular characterization of a novel sugarcane mastrevirus. [P13]. Fernandez Emmanuel, Boukari Wardatou, Alcala-Briseño Ricardo I., Kraberger Simona, Filloux Denis, Lett Jean-Michel, Lefeuvre Pierre, Comstock Jack C., Daugrois Jean-Heinrich, Varsani Arvind, Polston Jane E., Rott Philippe, Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, 74.
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Metagenomics-based discovery and molecular characterization of novel geminiviruses from two Mediterranean-climate biodiversity hotspots. [P57]. Galzi Serge, Bernardo Pauline, Fernandez Emmanuel, Julian Charlotte, Ferdinand Romain, Harkins Gordon William, Peterschmitt Michel, Martin Darren Patrick, Filloux Denis, Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, 118.
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Sugarcane mild mosaic virus: towards the full characterization of this sugarcane Ampelovirus re-discovered using metagenomics-based approaches. [P03]. Daugrois Jean-Heinrich, Candresse Thierry, Fernandez Emmanuel, Filloux Denis, Julian Charlotte, Teycheney Pierre-Yves, Mollov D., Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, 64.
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Using preserved herbarium specimens to analyse past viral diversity: preliminary methodological results. [P53]. Julian Charlotte, Fernandez Emmanuel, Lefeuvre Pierre, Lett Jean-Michel, Bernardo Pauline, Malmstrom Carolyn M., Martin Darren Patrick, Filloux Denis, Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, 114.
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Viral metagenomics-based approach to uncover mastreviruses diversity within Reunion Island's agroecological interfaces. [P50]. Claverie Sohini, Ouattara Alassane, Hoareau Murielle, Hascoat Jérémy, Lebreton Gérard, Grondin Martial, Fernandez Emmanuel, Filloux Denis, Roumagnac Philippe, Lett Jean-Michel, Lefeuvre Pierre. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, 111.
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Identification of a new Mastrevirus of Saccharum barberi, Saccharum officinarum and Saccharum spontaneum in Florida. Boukari Wardatou, Alcala-Briseño Ricardo I., Kraberger Simona, Fernandez Emmanuel, Filloux Denis, Comstock Jack C., Varsani Arvind, Roumagnac Philippe, Polston Jane E., Rott Philippe. 2016. . Tampa : s.n., Résumé, 1-2.
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Looking for the vector of the latest discovered geminivirus genus, Capulavirus. [P.48]. Bernardo Pauline, Deshoux Maëlle, Granier Martine, Ferdinand Romain, Galzi Serge, Fernandez Emmanuel, Blanc Stéphane, Filloux Denis, Peterschmitt Michel, Roumagnac Philippe. 2015. In : 15èmes Rencontres de Virologie Végétale, Aussois, France, 18-22 janvier 2015. CIRAD ; IRD. s.l. : s.n., Résumé, 106.
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Metagenomic discovery, worldwide distribution and genetic diversity of novel macluraviruses infecting yams (Dioscorea spp.). [P.28]. Filloux Denis, Bonheur Lydiane, Umber Marie, Pavis Claudie, Fernandez Emmanuel, Galzi Serge, Julian Charlotte, Daugrois Jean-Heinrich, Sukal Amit, Winter Stephan, Teycheney Pierre-Yves, Candresse Thierry, Roumagnac Philippe. 2015. In : 15èmes Rencontres de Virologie Végétale, Aussois, France, 18-22 janvier 2015. CIRAD ; IRD. s.l. : s.n., Résumé, 86.
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Metagenomic screening of the sugarcane virome in Florida. [P.36]. Fernandez Emmanuel, Filloux Denis, Comstock Jack C., ElSayed Abdelaleim, Roumagnac Philippe, Rott Philippe. 2015. In : 15èmes Rencontres de Virologie Végétale, Aussois, France, 18-22 janvier 2015. CIRAD ; IRD. s.l. : s.n., Résumé, 94.
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Metagenomics-based detection of viruses infecting cowpea in Burkina-Faso. [P.30]. Palanga Essowè, Fernandez Emmanuel, Filloux Denis, Ferdinand Romain, Bouma Neya James, Sawadogo Mahamadou, Traoré Oumar, Peterschmitt Michel, Roumagnac Philippe. 2015. In : 15èmes Rencontres de Virologie Végétale, Aussois, France, 18-22 janvier 2015. CIRAD ; IRD. s.l. : s.n., Résumé, 88.
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Development of the loop mediated isothermal amplification (LAMP) method for detection of Cauliflower mosaic virus. Fernandez Emmanuel, Ouvray Cédric, Roumagnac Philippe, Froissart Rémi. 2013. In : 1st International Conference Wild Plant Pathosystems (WPP 2013), Olomouc, République Tchèque, 2-5 July 2013. s.l. : s.n., 1 p.
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Exploration sans a priori de la biodiversité phytovirale de l'igname (Dioscorea spp.) en serre de quarantaine. Filloux Denis, Galzi Serge, Fernandez Emmanuel, Roumagnac Philippe. 2011. In : 13èmes Rencontres de virologie végétale (RVV 2011), Aussois, France, 16-20 janvier 2011. SFP. s.l. : s.n., 1 p.
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Géo-métagénomique. Déchiffrer la biodiversité spatiale des phytovirus associés à des agro-écosystèmes tropicaux et méditerranéens. Fernandez Emmanuel, Galzi Serge, Filloux Denis, Girard Jean-Claude, Martin Darren Patrick, Roumagnac Philippe. 2011. In : 13èmes Rencontres de virologie végétale (RVV 2011), Aussois, France, 16-20 janvier 2011. SFP. s.l. : s.n., 1 p.
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A new genus-level geminivirus lineage isolated from the South African fynbos. Bernardo Pauline, Fernandez Emmanuel, Granier Martine, Urbino Cica, Peterschmitt Michel, Martin Darren Patrick, Roumagnac Philippe. 2011. In : 4th Plant Virus Ecology Network Workshop (PVEN), Montpellier, France, May 30 to June 1, 2011. s.l. : s.n., 1 p.
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Metagenomics and quarantine: searching for the unknown. Roumagnac Philippe, Fernandez Emmanuel. 2010. In : 3rd Plant Virus Ecology Network (PVEN) Workshop, Ithaca, USA, June 20-24, 2010. s.l. : s.n., 1 p.
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Metagenomics and quarantine: searching for the unknown. Roumagnac Philippe, Fernandez Emmanuel. 2009. In : Understanding emergence of infectious diseases: focus on New Experimental and Theoretical Approaches to Virus Evolution = Maladies infectieuses émergentes : focus sur les nouvelles approches expérimentales et théoriques de l'évolution virale. Jacques Monod. s.l. : s.n., 1 p.
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Population fluctuations of tephritids of economic importance in Reunion Island. Quilici Serge, Montagneux B., Simiand Christophe, Fernandez Emmanuel, Turpin Patrick. 1998. In : Fifth international symposium on fruit flies of economic importance, Penang, Malaysia, 1998 June 1-5. s.l. : s.n., 7 p.

Communication sans actes

Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale. O13. Bernardo Pauline, Charles-Dominique Tristan, Barakat Mohamed, Ortet Philippe, Fernandez Emmanuel, Filloux Denis, Hartnady Penelope, Rebelo Tony A., Cousins Stephen, Mesleard François, Cohez Damien, Yaverkovski Nicole, Varsani Arvind, Harkins Gordon William, Peterschmitt Michel, Malmstrom Carolyn, Martin Darren Patrick, Roumagnac Philippe. 2018. In : Book of abstract Pathobiome 2018. INRA. Ajaccio : INRA, Résumé, 25-26.
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Viral treasure hunt in European outermost territories: how metagenomics boosts the discovery of novel viral species in tropical and sub-tropical crops germplasm. [O.18]. Teycheney Pierre-Yves, Bandou Eric, Gomez Rose-Marie, Lange David, Pavis Claudie, Umber Marie, Acina Manbole Isabelle Nina, Bonheur Lydiane, Daugrois Jean-Heinrich, Fernandez Emmanuel, Filloux Denis, Julian Charlotte, Roumagnac Philippe, Grisoni Michel, Pierret Alycia, Rubington Margot, Candresse Thierry, Contreras Sandy, Faure Chantal, Marais Armelle, Theil Sébastien, Do Heroismo Angra, Da Câmara Machado Artur, Mendonça Duarte, Pinheiro de Carvalho Miguel A.A., Silva Emanuel. 2015. In : 15èmes Rencontres de Virologie Végétale, Aussois, France, 18-22 janvier 2015. CIRAD ; IRD. s.l. : s.n., Résumé, 30.
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Visacane, the Cirad quarantine tool for the exchange of pest and disease-free sugarcane germplasm. Guinet-Brial Isabelle, Girard Jean-Claude, Roumagnac Philippe, Daugrois Jean-Heinrich, Fernandez Emmanuel, Rott Philippe. 2014. In : 5th IAPSIT International Sugar Conference (IS-2014) onThe Green Technologies for Sustainable growth of Sugar Industry in Developing Countries, November 25-28, 2014, Nanning, China. Yang-Rui Li, G.P. Rao, S. Solomon, Li-Tao Yang, Zhong Liu, Wei-Zhong He,. Naming : IAPSIT, Résumé, 363.
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Characterization of novel, highly divergent geminiviruses and insights into the evolutionary history of geminiviruses. Bernardo Pauline, Ortet Philippe, Barakat Mohamed, Rebelo Anthony, Cousins Stephen, Fernandez Emmanuel, Mesleard François, Peterschmitt Michel, Filloux Denis, Varsani Arvind, Martin Darren Patrick, Roumagnac Philippe. 2013. In : 7th International Geminvirus Symposium and 5th International ssDNA Comparative Virology Workshop, Hangzhou, China, November 3-9, 2013. s.l. : s.n., Résumé, 1 p.
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Detection of Sugarcane yellow leaf virus by a novel reverse transcription loop-mediated isothermal amplification method from three sugarcane production regions in Kenya. Fernandez Emmanuel, Amata Ruth Lodenyi, Roumagnac Philippe. 2013. In : 14èmes Rencontres de virologie végétale (RVV 2013) : Aussois, France, 13-17 janvier 2013. Marais Armelle (ed.), Revers Frédéric (ed.). SFP, INRA. Paris : SFP, 71.
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Diverse circular single-stranded DNA viruses discovered from research greenhouses and agro-ecosystems. Fort Guillaume, Bernardo Pauline, Fernandez Emmanuel, Galzi Serge, Filloux Denis, Roumagnac Philippe. 2013. In : 14èmes Rencontres de virologie végétale (RVV 2013) : Aussois, France, 13-17 janvier 2013. Marais Armelle (ed.), Revers Frédéric (ed.). SFP, INRA. Paris : SFP, Résumé, 66.
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Geo-metagenomics: deciphering the spatial biodiversity of ssDNA viruses associated with Western Cape and Camargue agroecosystems. Bernardo Pauline, Ortet Philippe, Barakat Mohamed, Rebelo Anthony, Cousins Stephen, Fernandez Emmanuel, Mesleard François, Peterschmitt Michel, Filloux Denis, Varsani Arvind, Martin Darren Patrick, Roumagnac Philippe. 2013. In : 7th International Geminvirus Symposium and 5th International ssDNA Comparative Virology Workshop, Hangzhou, China, November 3-9, 2013. s.l. : s.n., Résumé, 1 p.
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Improvement of three nucleic acid isolation protocols for an overall diagnosis of viruses on six vegetative propagated plants. Julian Charlotte, Bernardo Pauline, Fernandez Emmanuel, Galzi Serge, Grisoni Michel, Da Silva Mendoça D.M., Pavis Claudie, Roumagnac Philippe, Filloux Denis. 2013. In : 14èmes Rencontres de virologie végétale (RVV 2013) : Aussois, France, 13-17 janvier 2013. Marais Armelle (ed.), Revers Frédéric (ed.). SFP, INRA. Paris : SFP, Résumé, 75.
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Molecular characterization of Euphorbia caput-medusae stunt virus: Evidence for the existence of a new genus within the family Geminiviridae. Bernardo Pauline, Fernandez Emmanuel, Granier Martine, Golden Michael, Rebelo Tony A., Peterschmitt Michel, Martin Darren Patrick, Roumagnac Philippe. 2013. In : 14èmes Rencontres de virologie végétale (RVV 2013) : Aussois, France, 13-17 janvier 2013. Marais Armelle (ed.), Revers Frédéric (ed.). SFP, INRA. Paris : SFP, Résumé, 9.
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New insights into the evolutionary history of geminiviruses derived through the discovery of divergent viruses isolated from wild plants. Bernardo Pauline, Golden Michael, Mohd A., Fernandez Emmanuel, Granier Martine, Rebelo A.G., Peterschmitt Michel, Martin Darren Patrick, Roumagnac Philippe. 2013. In : 1st International Conference Wild Plant Pathosystems (WPP 2013), Olomouc, République Tchèque, 2-5 July 2013. s.l. : s.n., Résumé, 1 p.
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Pathology and viral metagenomics, a recent history. Bernardo Pauline, Fernandez Emmanuel, Filloux Denis, Albina Emmanuel, Eloit Marc, Roumagnac Philippe. 2013. In : 14èmes Rencontres de virologie végétale (RVV 2013) : Aussois, France, 13-17 janvier 2013. Marais Armelle (ed.), Revers Frédéric (ed.). SFP, INRA. Paris : SFP, Résumé, 20.
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Development of the loop mediated isothermal amplification (LAMP) method for detection of Sugarcane yellow leaf virus. Fernandez Emmanuel, Amata Ruth Lodenyi, Rott Philippe, Roumagnac Philippe. 2012. In : 10th Pathology Workshop. Understanding sugar cane diseases for their efficient management, 07-11 May 2012, Nanning, China. s.l. : s.n., Résumé, 60.
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Biotic and abiotic factors altogether affect the spread of the vectored emerging disease, Yellow leaf of sugarcane, in Guadeloupe. Daugrois Jean-Heinrich, Edon-Jock Carine, Fernandez Emmanuel. 2011. In : 4th Plant Virus Ecology Network Workshop (PVEN), Montpellier, France, May 30 to June 1, 2011. s.l. : s.n., Résumé, 1 p.
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Visacane, an innovative quarantine tool for the exchange of pest and disease-free sugarcane germplasm. Girard Jean-Claude, Guinet Isabelle, Roumagnac Philippe, Fernandez Emmanuel, Rott Philippe. 2011. In : 10th Germplasm and Breeding, and 7th Molecular Biology Workshop, Maceió, Brazil, 15-20 May 2011 : Breaking breeding and biotechnology paradigms - towards a complementary approach in sugar cane research. Abstract. ISSCT, STAB. Réduit : ISSCT, Résumé, 27.
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Genetic diverstiy of Sugarcane yellow leaf virus in a sugarcane selection plot in Guadeloupe (FWI). Girard Jean-Claude, Fernandez Emmanuel, Daugrois Jean-Heinrich, Roques Danièle, Roumagnac Philippe, Rott Philippe. 2010. In : ISSCT 2010: 27th Congress of the International Society of Sugar Cane Technologists Congres, Veracruz, Mexique, 7-11 mars 2010. ISSCT. s.l. : s.n., 9 p.
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Variation in sugarcane cultivar host range of Sugarcane yellow leaf virus genotypes in Guadeloupe. Daugrois Jean-Heinrich, Débibakas Sarah, Fernandez Emmanuel, Girard Jean-Claude, Rott Philippe. 2010. In : Building bridges between disciplines for sustainable management of plant virus diseases. s.l. : s.n., Résumé, 1 p.
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Improved detection of sugarcane yellow leaf based on genetic diversity studies of Sugarcane yellow leaf virus. Girard Jean-Claude, Fernandez Emmanuel, Royer Monique, Daugrois Jean-Heinrich, Edon-Jock Carine, Rott Philippe. 2008. In : Advances and challenges in sugarcane biotechnology and plant pathology : proceedings : Joint ISSCT IX Plant Pathology and VI Molecular Biology Workshop, Cali, Colombia, 23-27 june 2008. ISSCT ; CENICANA. Cali : ISSCT, Résumé, 1 p.

Modern tools for safe detection of diseases in sugarcane quarantine. Girard Jean-Claude, Fernandez Emmanuel, Royer Monique, Rott Philippe. 2008. In : 3rd International IAPIST Conference. Meeting the Challenges of Sugar Crops and Integrated Industrin Developing Countries, 11-14 September 2008, AI Arish, Egypt. s.l. : s.n., 439.
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Status of sugar cane yellow leaf disease in the French West Indies and in other islands of the Carribean. Daugrois Jean-Heinrich, Edon-Jock Carine, Fernandez Emmanuel, Girard Jean-Claude, Rott Philippe. 2008. In : Proceedings of the XXIX West Indies Sugar Technologists' Association Conference. Montego Bay : Sugar Association of the Caribbean, 6 p.
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Variation of sugar cane yellow leaf disease status in the French West Indies. Daugrois Jean-Heinrich, Edon-Jock Carine, Fernandez Emmanuel, Girard Jean-Claude, Rott Philippe. 2008. In : Advances and challenges in sugarcane biotechnology and plant pathology : proceedings : Joint ISSCT IX Plant Pathology and VI Molecular Biology Workshop, Cali, Colombia, 23-27 june 2008. ISSCT ; CENICANA. Cali : ISSCT, Résumé, 1 p.

Impact of genetic diversity of sugarcane yellow leaf virus on diagnosis of surgarcane yellow leaf and germplasm movement. Girard Jean-Claude, Fernandez Emmanuel, Royer Monique, Edon-Jock Carine, Abu Ahmad Youssef, Daugrois Jean-Heinrich, Rott Philippe. 2007. In : International Conference on Emerging and Re-Emerging Viral Diseases of the Tropics and Sub-Tropics, December 11-14, 2007, New Delhi. Indian Virological Society. s.l. : s.n., Résumé, 143.

Molecular diagnosis and genetic diversity of the causal agents of mosaic and streak mosaic of sugarcane. Fernandez Emmanuel, Girard Jean-Claude, Royer Monique, Rott Philippe. 2006. In : VIIIth ISSCT Pathology Workshop Petit-Bourg, Guadeloupe (FWI), 23-27 January 2006, programme and abstracts. Daugrois Jean-Heinrich. ISSCT, CIRAD-CA. Réduit : ISSCT, Résumé
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The sugarcane quarantine of CIRAD in Montpellier, France : from disease diagnosis to fundamental research and vice versa. Girard Jean-Claude, Fernandez Emmanuel, Rott Philippe. 2006. In : VIIIth ISSCT Pathology Workshop Petit-Bourg, Guadeloupe (FWI), 23-27 January 2006, programme and abstracts. Daugrois Jean-Heinrich. ISSCT, CIRAD-CA. Réduit : ISSCT, Résumé
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Detection of Sugarcane streak mosaic virus in surgarcane from several asian countries. Chatenet Michèle, Mazarin Candy, Girard Jean-Claude, Fernandez Emmanuel, Gargani Daniel, Rao Govind P., Royer Monique, Rott Philippe. 2005. In : International Society of Sugar Cane Technologists Proceedings of the XXV Congress, 30 January - 4 February 2005, Guatemala. Ed. Hogarth. Guatemala : ATAGUA, 656-663. ISBN 99922-2-211-5

Dynamique des populations de Tephritidae à la Réunion. Quilici Serge, Montagneux B., Simiand Christophe, Fernandez Emmanuel, Turpin Patrick. 1998. In : Réunion annuelle 1998 CIRAD-Flhor. Résumés, liste des participants. Arboriculture fruitière du 31 août au 02 septembre 1998, journées "semences et plants" du 03 au 04 septembre 1998. CIRAD-FLHOR. Montpellier : CIRAD-FLHOR, 1 p.

Rapport de mission

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