Parcourir par Auteur Cirad

Genomic selection for salinity tolerance in japonica rice. Bartholome Jérôme, Frouin Julien, Brottier Laurent, Cao Tuong-Vi, Boisnard Arnaud, Ahmadi Nourollah, Courtois Brigitte. 2023. PloS One, 18 (9):e0291833, 22 p.

Multi-environment genomic selection in rice elite breeding lines. Nguyen Van Hieu, Morantte Rose Imee Zhella, Lopena Vitaliano, Verdeprado Holden, Murori Rosemary, Ndayiragije Alexis, Kumar Katiyar Sanjay, Islam Md Rafiqul, Juma Roselyne Uside, Flandez-Galvez Hayde, Glaszmann Jean-Christophe, Cobb Joshua N., Bartholome Jérôme. 2023. Rice, 16 (1), 17 p.

Optimization of multi-generation multi-location genomic prediction models for recurrent genomic selection in an upland rice population. De Verdal Hugues, Baertschi Cédric, Frouin Julien, Quintero Constanza, Ospina Yolima, Alvarez María Fernanda, Cao Tuong-Vi, Bartholome Jérôme, Grenier Cécile. 2023. Rice, 16:43, 18 p.

Population improvement via recurrent selection drives genetic gain in upland rice breeding. Pereira de Castro Adriano, Breseghello Flavio, Furtini Isabela Volpi, Utumi Marley Marico, Almeida Pereira José, Cao Tuong-Vi, Bartholome Jérôme. 2023. Heredity, 131 (3) : 201-210.

Realized genetic gain in rice: Achievements from breeding programs. Seck Fallou, Covarrubias-Pazaran Giovanny, Gueye Tala, Bartholome Jérôme. 2023. Rice, 16:61, 22 p.

Genetic trends estimation in IRRIs rice drought breeding program and Iidentification of high yielding drought-tolerant lines. Khanna Apurva, Anumalla Mahender, Catolos Margaret, Bartholome Jérôme, Fritsche-Neto Roberto, Platten John Damien, Pisano Daniel Joseph, Gulles Alaine, Sta. Cruz Ma Teresa, Ramos Joie, Faustino Gem, Bhosale Sankalp, Hussain Waseem. 2022. Rice, 15:14, 14 p.

Identification of an elite core panel as a key breeding resource to accelerate the rate of genetic improvement for irrigated rice. Juma Roselyne Uside, Bartholome Jérôme, Thathapalli Prakash Parthiban, Hussain Waseem, Platten John Damien, Lopena Vitaliano, Verdeprado Holden, Murori Rosemary, Ndayiragije Alexis, Kumar Katiyar Sanjay, Islam M. Rafiqul, Biswas Partha S., Rutkoski Jessica, Arbelaez Juan David, Mbute Felister N., Miano Douglas W., Cobb Joshua N.. 2021. Rice, 14 (1):92, 22 p.

Impact of early genomic prediction for recurrent selection in an upland rice synthetic population. Baertschi Cédric, Cao Tuong-Vi, Bartholome Jérôme, Ospina Yolima, Quintero Constanza, Frouin Julien, Bouvet Jean-Marc, Grenier Cécile. 2021. G3 - Genes Genomes Genetics, 11 (12):jkab320, 16 p.

Genome-wide association study for yield and yield related traits under reproductive stage drought in a diverse indica-aus rice panel. Bhandari Aditi, Sandhu Nitika, Bartholome Jérôme, Cao-Hamadou Tuong-Vi, Ahmadi Nourollah, Kumari Nilima, Kumar Arvind. 2020. Rice, 13 (1):53, 22 p.

The genetics of exapted resistance to two exotic pathogens in pedunculate oak. Bartholome Jérôme, Brachi Benjamin, Marçais Benoît, Mougou‐Hamdane Amira, Bodenes Catherine, Plomion Christophe, Robin Cécile, Desprez‐Loustau Marie‐Laure. 2020. New Phytologist, 226 (4), n.spéc. Featured papers on 'Oak genomics' : 1088-1103.

The pulse of the tree is under genetic control: Eucalyptus as a case study. Bartholome Jérôme, Mabiala André, Burlett Régis, Bert Didier, Leplé Jean-Charles, Plomion Christophe, Gion Jean-Marc. 2020. Plant Journal, 103 (1) : 338-356.

Fine scale genomic signals of admixture and alien introgression among Asian rice landraces. Santos Joao, Chebotarov Dmytro, McNally Kenneth L., Bartholome Jérôme, Droc Gaëtan, Billot Claire, Glaszmann Jean-Christophe. 2019. Genome Biology and Evolution, 11 (5) : 1358-1373.

Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice. Bhandari Aditi, Bartholome Jérôme, Cao-Hamadou Tuong-Vi, Kumari Nilima, Frouin Julien, Kumar Arvind, Ahmadi Nourollah. 2019. PloS One, 14 (5), e0208871, 21 p.

Genomic prediction accounting for genotype by environment interaction offers an effective framework for breeding simultaneously for adaptation to an abiotic stress and performance under normal cropping conditions in rice. Ben Hassen Manel, Bartholome Jérôme, Valè Giampiero, Cao Tuong-Vi, Ahmadi Nourollah. 2018. G3 - Genes Genomes Genetics, 8 (7) : 2319-2332.

Oak genome reveals facets of long lifespan. Plomion Christophe, Aury Jean-Marc, Amselem Joelle, Leroy Thibault, Murat Florent, Duplessis Sébastien, Faye Sébastien, Francillonne Nicolas, Labadie Karine, Le Provost Grégoire, Lesur Isabelle, Bartholome Jérôme, Faivre-Rampant Odile, Kohler Annegret, Leplé Jean-Charles, Chantret Nathalie, Chen Jun, Diévart Anne, et al.. 2018. Nature Plants, 4 : 440-452.

Rice diversity panel provides accurate genomic predictions for complex traits in the progenies of biparental crosses involving members of the panel. Ben Hassen Manel, Cao Tuong-Vi, Bartholome Jérôme, Orasen Gabriele, Colombi C., Rakotomalala J., Razafinimpiasa Lisy, Bertone C., Biselli Chiara, Volante Andrea, Desiderio Francesca, Jacquin Laval, Valè Giampiero, Ahmadi Nourollah. 2018. Theoretical and Applied Genetics, 131 (2) : 417-435.

High-density SNP assay development for genetic analysis in maritime pine (Pinus pinaster). Plomion Christophe, Bartholomé Jérôme, Lesur Isabelle, Boury Christophe, Rodríguez-Quilón I., Lagraulet Hélène, Ehrenmann François, Bouffier L., Gion Jean-Marc, Grivet D., de Miguel Marina, de Maria Nuria, Cervera María-Teresa, Bagnoli F., Isik F., Vendramin Giovanni G., González-Martínez S.C.. 2016. Molecular Ecology Resources, 16 : 574-587.

Evidence of intense chromosomal shuffling during conifer evolution. de Miguel Marina, Bartholomé Jérôme, Ehrenmann François, Murat Florent, Moriguchi Yoshinari, Uchiyama Kentaro, Ueno Saneyoshi, Tsumura Yoshihiko, Lagraulet Hélène, de Maria Nuria, Cabezas José-Antonio, Cervera María-Teresa, Gion Jean-Marc, Salse Jérôme, Plomion Christophe. 2015. Genome Biology and Evolution, 7 (1) : 2799-2809.

Genetic architecture of carbon isotope composition and growth in Eucalyptus across multiple environments. Bartholomé Jérôme, Mabiala André, Savelli Bruno, Bert Didier, Brendel Olivier, Plomion Christophe, Gion Jean-Marc. 2015. New Phytologist, 206 (4), n.spéc. Featured papers on 'Eucalyptus genome' : 1437-1449.

High-resolution genetic maps of Eucalyptus improve Eucalyptus grandis genome assembly. Bartholomé Jérôme, Mandrou Eric, Mabiala André, Jenkins Jerry, Nabihoudine Ibouniyamine, Klopp Christophe, Schmutz Jeremy, Plomion Christophe, Gion Jean-Marc. 2015. New Phytologist, 206 (4), n.spéc. Featured papers on 'Eucalyptus genome' : 1283-1296.

The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release. Lesur Isabelle, Le Provost Grégoire, Bento Pascal, Da Silva Corinne, Leplé Jean-Charles, Murat Florent, Ueno Saneyoshi, Bartholomé Jérôme, Lalanne Céline, Ehrenmann François, Noirot Céline, Burban Benoit, Léger Valérie, Amselem Joelle, Belser Caroline, Quesneville Hadi, Stierschneider Michael, Fluch Silvia, Feldhahn Lasse, Tarkka Mika, Herrmann Sylvie, Buscot François, Klopp Christophe, Kremer Antoine, Salse Jérôme, Aury Jean-Marc, Plomion Christophe. 2015. BMC Genomics, 16:112, 23 p.

Plasticity of primary and secondary growth dynamics in Eucalyptus hybrids: A quantitative genetics and QTL mapping perspective. Bartholomé Jérôme, Salmon Frédéric, Vigneron Philippe, Bouvet Jean-Marc, Plomion Christophe, Gion Jean-Marc. 2013. BMC Plant Biology, 13 (120), 14 p.

Genomic prediction of complex traits : methods and protocols. Ahmadi Nourollah (ed.), Bartholome Jérôme (ed.). 2022. New-York : Humana Press-Springer, 659 p. (Methods in Molecular Biology, 2467) ISBN 978-1-0716-2204-9

Genomic prediction: progress and perspectives for rice improvement. Bartholome Jérôme, Prakash Parthiban Thathapalli, Cobb Joshua N.. 2022. In : Genomic prediction of complex traits: methods and protocols. Ahmadi Nourollah (ed.), Bartholomé Jérôme (ed.). New York : Humana Press-Springer, 569-617. (Methods in Molecular Biology, 2467, 2467) ISBN 978-1-0716-2204-9

Daily stem radial fluctuations in Eucalyptus reveals the dynamic of the genetic determinants of trees response to environment. Bartholome Jérôme, Mabiala André, Burlett Régis, Bert Didier, Leplé Jean-Charles, Plomion Christophe, Gion Jean-Marc. 2018. In : Eucalyptus 2018: Managing Eucalyptus plantation under global changes. Abstracts book. CIRAD, IUFRO, MUSE. Montpellier : CIRAD, Résumé, 82-83. ISBN 978-2-87614-743-0 Eucalyptus 2018, Montpellier, France, 17 Septembre 2018/21 Septembre 2018.

Transform rice breeding through integration of genomic selection with regional testing network. Prakash Parthiban Thathapalli, Arbelaez Velez Juan David, Bartholome Jérôme, Imee Zhella Rose, Verdeprado Holden, Lopena Vitaliano, Rutkoski Jessica, Rafiqul Mohammad, Murori Rosemary, Ndayiragije Alexis, Singh V.P., Kumar Katiyar Sanjay, Cobb Joshua N., Kadaru Suresh, Bhosale Sankalp. 2022. . San Diego : PAG, Résumé, 1 p. Plant and Animal Genome conference. 29, San Diego, États-Unis, 8 Janvier 2022/12 Janvier 2022.

Empowering global rice breeding programs using genomic selection. [W291]. Prakash Parthiban Thathapalli, Arbelaez Velez Juan David, Verdeprado Holden, Lopena Vitaliano, Imee Zhella Rose, Bartholome Jérôme, Rutkoski Jessica, Murori Rosemary, Ndayiragije Alexis, Rafiqul Mohammad, Kumar Katiyar Sanjay, Cobb Joshua. 2020. In : Abstracts workshops of the PAG XXVIII. San Diego : PAG, Résumé, 129-130. Plant and Animal Genome. 28, San Diego, États-Unis, 11 Janvier 2020/15 Janvier 2020.

The evolution of a revolution: re-designing green revolution breeding programs in Asia and Africa to increase rates of genetic gain. [W020]. Cobb Joshua, Rafiqul Mohammad, Kumar Katiyar Sanjay, Ndayiragije Alexis, Murori Rosemary, Platten John Damien, Bartholome Jérôme. 2020. In : Abstracts workshops of the PAG XXVIII. San Diego : PAG, Résumé, 9. Plant and Animal Genome. 28, San Diego, États-Unis, 11 Janvier 2020/15 Janvier 2020.

Genomic selection in rice: lessons learned from a large set of proof-of-concept studies embedded in current breeding programs. Ahmadi Nourollah, Bartholome Jérôme, Cao Tuong-Vi, Courtois Brigitte, Grenier Cécile, Taillebois James E.. 2018. . IRRI. Singapore : IRRI, Résumé, 1 p. International Rice Congress 2018 (IRC 2018). 5, Singapour, Singapour, 15 Octobre 2018/17 Octobre 2018.

breedgenr: a non-parametric based breeding program simulator with applications on rice. Bartholome Jérôme, Jacquin Laval, Cao Tuong-Vi, Ahmadi Nourollah. 2018. . IRRI. Singapour : IRRI, Résumé, 1 p. International Rice Congress 2018 (IRC 2018), Singapour, Singapour, 15 Octobre 2018/17 Octobre 2018.

Early environmental conditions determine the genetic architecture of growth traits of Eucalyptus grown in Congo : W288. Bartholomé Jérôme, Plomion Christophe, Bouvet Jean-Marc, Gion Jean-Marc. 2013. In : Plant and Animal Genome XXI conference, San Diego, USA, January 12-16 2013,. s.l. : s.n., Résumé, 1 p. Plant and Animal Genome conference. 21, San Diego, États-Unis, 12 Janvier 2013/16 Janvier 2013.

A High-density linkage map for Eucalyptus urophylla and E. grandis based on 1,100 F1 progenies genotyped with 6,000 SnP markers : P0474. Bartholomé Jérôme, Mandrou Eric, Nabihoudine Ibouniyamine, Klopp Christophe, Plomion Christophe, Gion Jean-Marc. 2013. In : Plant and Animal Genome XXI conference, San Diego, USA, January 12-16 2013,. s.l. : s.n., Résumé, 1 p. Plant and Animal Genome conference. 21, San Diego, États-Unis, 12 Janvier 2013/16 Janvier 2013.

Déterminisme génétique de la dynamique de croissance et de la composition isotopique du carbone chez l'Eucalyptus en réponse aux variations environnementales. Bartholomé Jérôme. 2014. Montpellier : Montpellier SupAgro, 296 p. Thèse de doctorat : Systèmes intégrés en biologie, agronomie, géosciences, hydrosciences et environnement (SIBAGHE). Biologie intégrative des plantes (BIP) : Montpellier SupAgro Centre international d'études supérieures en sciences agronomiques