Browse by CIRAD authors

The pulse of the tree is under genetic control: Eucalyptus as a case study. Bartholome Jérôme, Mabiala André, Burlett Régis, Bert Didier, Leplé Jean-Charles, Plomion Christophe, Gion Jean-Marc. 2020. Plant Journal, 103 (1) : pp. 338-356.

Fine scale genomic signals of admixture and alien introgression among Asian rice landraces. Santos Joao, Chebotarov Dmytro, McNally Kenneth L., Bartholome Jérôme, Droc Gaëtan, Billot Claire, Glaszmann Jean-Christophe. 2019. Genome Biology and Evolution, 11 (5) : pp. 1358-1373.

Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice. Bhandari Aditi, Bartholome Jérôme, Cao-Hamadou Tuong-Vi, Kumari Nilima, Frouin Julien, Kumar Arvind, Ahmadi Nourollah. 2019. PloS One, 14 (5), e0208871, 21 p.

Genomic prediction accounting for genotype by environment interaction offers an effective framework for breeding simultaneously for adaptation to an abiotic stress and performance under normal cropping conditions in rice. Ben Hassen Manel, Bartholome Jérôme, Valè Giampiero, Cao Tuong-Vi, Ahmadi Nourollah. 2018. G3 - Genes Genomes Genetics, 8 (7) : pp. 2319-2332.

Oak genome reveals facets of long lifespan. Plomion Christophe, Aury Jean-Marc, Amselem Joelle, Leroy Thibault, Murat Florent, Duplessis Sébastien, Faye Sébastien, Francillonne Nicolas, Labadie Karine, Le Provost Grégoire, Lesur Isabelle, Bartholome Jérôme, Faivre-Rampant Odile, Kohler Annegret, Leplé Jean-Charles, Chantret Nathalie, Chen Jun, Diévart Anne, et al.. 2018. Nature Plants, 4 : pp. 440-452.

Rice diversity panel provides accurate genomic predictions for complex traits in the progenies of biparental crosses involving members of the panel. Ben Hassen Manel, Cao Tuong-Vi, Bartholome Jérôme, Orasen G., Colombi C., Rakotomalala J., Razafinimpiasa L., Bertone C., Biselli Chiara, Volante Andrea, Desiderio Francesca, Jacquin Laval, Valè Giampiero, Ahmadi Nourollah. 2018. Theoretical and Applied Genetics, 131 (2) : pp. 417-435.

High-density SNP assay development for genetic analysis in maritime pine (Pinus pinaster). Plomion Christophe, Bartholomé Jérôme, Lesur Isabelle, Boury Christophe, Rodríguez-Quilón I., Lagraulet Hélène, Ehrenmann François, Bouffier L., Gion Jean-Marc, Grivet D., de Miguel Marina, de Maria Nuria, Cervera María-Teresa, Bagnoli F., Isik F., Vendramin Giovanni G., González-Martínez S.C.. 2016. Molecular Ecology Resources, 16 : pp. 574-587.

Evidence of intense chromosomal shuffling during conifer evolution. de Miguel Marina, Bartholomé Jérôme, Ehrenmann François, Murat Florent, Moriguchi Yoshinari, Uchiyama Kentaro, Ueno Saneyoshi, Tsumura Yoshihiko, Lagraulet Hélène, de Maria Nuria, Cabezas José-Antonio, Cervera María-Teresa, Gion Jean-Marc, Salse Jérôme, Plomion Christophe. 2015. Genome Biology and Evolution, 7 (1) : pp. 2799-2809.

Genetic architecture of carbon isotope composition and growth in Eucalyptus across multiple environments. Bartholomé Jérôme, Mabiala André, Savelli Bruno, Bert Didier, Brendel Olivier, Plomion Christophe, Gion Jean-Marc. 2015. New Phytologist, 206 (4), n.spéc. Featured papers on 'Eucalyptus genome' : pp. 1437-1449.

High-resolution genetic maps of Eucalyptus improve Eucalyptus grandis genome assembly. Bartholomé Jérôme, Mandrou Eric, Mabiala André, Jenkins Jerry, Nabihoudine Ibouniyamine, Klopp Christophe, Schmutz Jeremy, Plomion Christophe, Gion Jean-Marc. 2015. New Phytologist, 206 (4), n.spéc. Featured papers on 'Eucalyptus genome' : pp. 1283-1296.

The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release. Lesur Isabelle, Le Provost Grégoire, Bento Pascal, Da Silva Corinne, Leplé Jean-Charles, Murat Florent, Ueno Saneyoshi, Bartholomé Jérôme, Lalanne Céline, Ehrenmann François, Noirot Céline, Burban Benoit, Léger Valérie, Amselem Joelle, Belser Caroline, Quesneville Hadi, Stierschneider Michael, Fluch Silvia, Feldhahn Lasse, Tarkka Mika, Herrmann Sylvie, Buscot François, Klopp Christophe, Kremer Antoine, Salse Jérôme, Aury Jean-Marc, Plomion Christophe. 2015. BMC Genomics, 16:112, 23 p.

Plasticity of primary and secondary growth dynamics in Eucalyptus hybrids: A quantitative genetics and QTL mapping perspective. Bartholomé Jérôme, Salmon Frédéric, Vigneron Philippe, Bouvet Jean-Marc, Plomion Christophe, Gion Jean-Marc. 2013. BMC Plant Biology, 13 (120), 14 p.

Daily stem radial fluctuations in Eucalyptus reveals the dynamic of the genetic determinants of trees response to environment. Bartholome Jérôme, Mabiala André, Burlett Régis, Bert Didier, Leplé Jean-Charles, Plomion Christophe, Gion Jean-Marc. 2018. In : Eucalyptus 2018: Managing Eucalyptus plantation under global changes. Abstracts book. CIRAD, IUFRO, MUSE. Montpellier : CIRAD, Résumé, pp. 82-83. ISBN 978-2-87614-743-0 Eucalyptus 2018, Montpellier, France, 17 September 2018/21 September 2018.

Empowering global rice breeding programs using genomic selection. [W291]. Prakash Parthiban, Arbelaez Velez Juan David, Verdeprado Holden, Lopena Vitaliano, Imee Zhella Rose, Bartholome Jérôme, Rutkoski Jessica, Murori Rosemary, Ndayiragije Alexis, Rafiqul Mohammad, Kumar Katiyar Sanjay, Cobb Joshua. 2020. In : Abstracts workshops of the PAG XXVIII. San Diego : PAG, Résumé, pp. 129-130. Plant and Animal Genome. 28, San Diego, États-Unis, 11 January 2020/15 January 2020.

The evolution of a revolution: re-designing green revolution breeding programs in Asia and Africa to increase rates of genetic gain. [W020]. Cobb Joshua, Rafiqul Mohammad, Kumar Katiyar Sanjay, Ndayiragije Alexis, Murori Rosemary, Platten John Damien, Bartholome Jérôme. 2020. In : Abstracts workshops of the PAG XXVIII. San Diego : PAG, Résumé, p. 9. Plant and Animal Genome. 28, San Diego, États-Unis, 11 January 2020/15 January 2020.

Genomic selection in rice: lessons learned from a large set of proof-of-concept studies embedded in current breeding programs. Ahmadi Nourollah, Bartholome Jérôme, Cao Tuong-Vi, Courtois Brigitte, Grenier Cécile, Taillebois James E.. 2018. . IRRI. Singapore : IRRI, Résumé, 1 p. International Rice Congress 2018 (IRC 2018). 5, Singapour, Singapour, 15 October 2018/17 October 2018.

breedgenr: a non-parametric based breeding program simulator with applications on rice. Bartholome Jérôme, Jacquin Laval, Cao Tuong-Vi, Ahmadi Nourollah. 2018. . IRRI. Singapour : IRRI, Résumé, 1 p. International Rice Congress 2018 (IRC 2018), Singapour, Singapour, 15 October 2018/17 October 2018.

Early environmental conditions determine the genetic architecture of growth traits of Eucalyptus grown in Congo : W288. Bartholomé Jérôme, Plomion Christophe, Bouvet Jean-Marc, Gion Jean-Marc. 2013. In : Plant and Animal Genome XXI conference, San Diego, USA, January 12-16 2013,. s.l. : s.n., Résumé, 1 p. Plant and Animal Genome conference. 21, San Diego, États-Unis, 12 January 2013/16 January 2013.

A High-density linkage map for Eucalyptus urophylla and E. grandis based on 1,100 F1 progenies genotyped with 6,000 SnP markers : P0474. Bartholomé Jérôme, Mandrou Eric, Nabihoudine Ibouniyamine, Klopp Christophe, Plomion Christophe, Gion Jean-Marc. 2013. In : Plant and Animal Genome XXI conference, San Diego, USA, January 12-16 2013,. s.l. : s.n., Résumé, 1 p. Plant and Animal Genome conference. 21, San Diego, États-Unis, 12 January 2013/16 January 2013.

Déterminisme génétique de la dynamique de croissance et de la composition isotopique du carbone chez l'Eucalyptus en réponse aux variations environnementales. Bartholomé Jérôme. 2014. Montpellier : Montpellier SupAgro, 296 p. Thèse de doctorat : Systèmes intégrés en biologie, agronomie, géosciences, hydrosciences et environnement (SIBAGHE). Biologie intégrative des plantes (BIP) : Montpellier SupAgro Centre international d'études supérieures en sciences agronomiques