Parcourir par Auteur Cirad

Deep sequencing and variant frequency analysis for the quality control of T1 vaccine against contagious bovine pleuropneumonia. Thiaucourt François, Exbrayat Antoni, Loire Etienne, Boissiere Anne, Nwankpa Nick, Manso-Silvan Lucia. 2024. In : 25th Congress of the International Organization for Mycoplasmology, July 7th‒11th, 2024, Gran Canaria, Spain.Program and Abstracts. Baranowski Eric (ed.), Citti Christine (ed.), Ramírez Ana S. (ed.), Rosales Rubén S. (ed.). IOM. Gran Canaria : IOM, Résumé, p. 155. International Organization for Mycoplasmology Congresss (IOM2024). 25, Gran Canaria, Espagne, 7 Juillet 2024/11 Juillet 2024.

Deep sequencing and variant frequency analysis for the quality control of a live bacterial vaccine against contagious bovine pleuropneumonia, strain T1. Thiaucourt François, Exbrayat Antoni, Loire Etienne, Boissiere Anne, Nwankpa Nick, Manso-Silvan Lucia. 2024. Vaccine, 42 (8) : 1868-1872.

One Health compartment analysis of ESBL-producing Escherichia coli reveals multiple transmission events in a rural area of Madagascar. Gay Noellie, Rabenandrasana Mamitina Alain Noah, Panandiniaina Harielle Prisca, Rakotoninidrina Marie Florence, Ramahatafandry Ilo Tsimok'Haja, Enouf Vincent, Roger François, Collard Jean-Marc, Cardinale Eric, Rieux Adrien, Loire Etienne. 2023. Journal of Antimicrobial Chemotherapy, 78 (8) : 1848-1858.

Spatial scale influences the distribution of viral diversity in the eukaryotic virome of the mosquito Culex pipiens. Gil Patricia, Exbrayat Antoni, Loire Etienne, Rakotoarivony Ignace, Charriat Florian, Morel Come, Baldet Thierry, Boisseau Michel, Marie Albane, Francés Benoit, L'Ambert Grégory, Bessat Mohamed, Otify Yehia, Goffredo Maria, Mancini Giuseppe, Busquets Núria, Birnberg Lotty, Talavera Sandra, Aranda Carles, Ayari Emna, Mejri Selma, Sghaier Soufien, Bennouna Amal, El Rhaffouli Hicham, Balenghien Thomas, Chlyeh Ghita, Fassi Fihri Ouafaa, Reveillaud Julie, Simonin Yannick, Eloit Marc, Gutierrez Serafin. 2023. Virus Evolution, 9 (2):vead054, 14 p.

Ant phylogenomics reveals a natural selection hotspot preceding the origin of complex eusociality. Romiguier Jonathan, Borowiec Marek L., Weyna Arthur, Helleu Quentin, Loire Etienne, La Mendola Christine, Rabeling Christian, Fisher Brian L., Ward Philip S., Keller Laurent. 2022. Current Biology, 32 (13) : 2942-2947.

Antibiotiques en élevage au Sud. Réduire leur usage et limiter les risques sanitaires et socioéconomiques. Ducrot Christian, Sarter Samira, Roger François, Bordier Marion, Goutard Flavie, Molia Sophie, Delabouglise Alexis, Peyre Marie-Isabelle, Loire Etienne, Cardinale Eric, Figuié Muriel, Rieux Adrien. 2022. In : Transformations agroécologiques pour des systèmes alimentaires durables. Panorama de la recherche France-CGIAR = Agroecological transformation for sustainable food systems. Insight on France-CGIAR research. Atta-Krah Kwesi (ed.), Chotte Jean-Luc (ed.), Gascuel Chantal (ed.), Gitz Vincent (ed.), Hainzelin Etienne (ed.), Quintero Marcela (ed.), Sinclair Fergus L. (ed.). Agropolis. Montpellier : Agropolis International, 47-48. (Les dossiers d'Agropolis International, 26)

Characterisation of chicken farms in Vietnam: A typology of antimicrobial use among different production systems. Batie Chloé, Ha Le Thi Thu, Loire Etienne, Truong Dinh Bao, Tuan Ha Dinh, Cuc Ngo Thi Kim, Paul Mathilde, Goutard Flavie. 2022. Preventive Veterinary Medicine, 208:105731, 10 p.

SILVI, an open-source pipeline for T-cell epitope selection. Pissarra Joana, Dorkeld Franck, Loire Etienne, Bonhomme Vincent, Sereno Denis, Lemesre Jean-Loup, Holzmuller Philippe. 2022. PloS One, 17 (9):e0273494, 20 p.

A participatory epidemiological and One Health approach to explore the community's capacity to detect emerging zoonoses and surveillance network opportunities in the forest region of Guinea. Guenin Marie-Jeanne, De Nys Hélène, Peyre Marie-Isabelle, Loire Etienne, Thongyuan Suporn, Diallo Abdoulaye, Zogbelemou Léonce, Goutard Flavie. 2022. PLoS Neglected Tropical Diseases, 16 (7):e0010462, 23 p.

DILS: Demographic inferences with linked selection by using ABC. Fraïsse Christelle, Popovic Iva, Mazoyer Clément, Spataro Bruno, Delmotte Stéphane, Romiguier Jonathan, Loire Etienne, Simon Alexis, Galtier Nicolas, Duret Laurent, Bierne Nicolas, Vekemans Xavier, Roux Camille. 2021. Molecular Ecology Resources, 21 (8), n.spéc. : 2629-2644.

The genome segments of bluetongue virus differ in copy number in a host-specific manner. Moreau Yannis, Gil Patricia, Exbrayat Antoni, Rakotoarivony Ignace, Breard Emmanuel, Sailleau Corinne, Viarouge Cyril, Zientara Stéphan, Savini Giovanni, Goffredo Maria, Mancini Giuseppe, Loire Etienne, Gutierrez Serafin. 2021. Journal of Virology, 95 (1):e01834-20, 9 p.

A library preparation optimized for metagenomics of RNA viruses. Gil Patricia, Dupuy Virginie, Koual Rachid, Exbrayat Antoni, Loire Etienne, Fall Assane Gueye, Gimonneau Geoffrey, Biteye Biram, Talla Seck Monar, Rakotoarivony Ignace, Marie Albane, Francés Benoit, Lambert Grégory, Reveillaud Julie, Balenghien Thomas, Garros Claire, Albina Emmanuel, Eloit Marc, Gutierrez Serafin. 2021. Molecular Ecology Resources, 21 (6) : 1788-1807.

In vitro shared transcriptomic responses of Aedes aegypti to arboviral infections: Example of dengue and Rift Valley fever viruses. Licciardi Séverine, Loire Etienne, Cardinale Eric, Gislard Marie, Dubois Emeric, Cetre-Sossah Catherine. 2020. Parasites and Vectors, 13 (1):395, 10 p.

A novel Borrelia species, intermediate between Lyme disease and relapsing fever groups, in neotropical passerine-associated ticks. Binetruy Florian, Garnier Stéphane, Boulanger Nathalie, Talagrand-Reboul Emilie, Loire Etienne, Faivre Bruno, Noel Valérie, Buysse Marie, Duron Olivier. 2020. Scientific Reports, 10 (1):10596, 10 p.

A whole-genome worldwide molecular epidemiology approach for contagious caprine pleuropneumonia. Loire Etienne, Issa Ibrahim Abdoulkarim, Manso-Silvan Lucia, Lignereux Louis, Thiaucourt François. 2020. Heliyon, 6:e05146, 7 p.

Evolution of attenuation and risk of reversal in Peste des Petits Ruminants vaccine strain Nigeria 75/1. Eloiflin Roger-Junior, Boyer Marie, Kwiatek Olivier, Guendouz Samia, Loire Etienne, Servan de Almeida Renata, Libeau Geneviève, Bataille Arnaud. 2019. Viruses, 11 (8):724, 18 p.

Evolution of attenuation and risk of reversal in Peste des Petits Ruminants vaccine strain Nigeria 75/1. Eloiflin Roger-Junior, Boyer Marie, Kwiatek Olivier, Guendouz Samia, Loire Etienne, Servan de Almeida Renata, Libeau Geneviève, Bataille Arnaud. 2019. In : 13th EPIZONE Annual Meeting "Breaking Walls" - Abstract Book. Mettenleiter Thomas C. (ed.), Beer Martin (ed.), Conraths Franz J. (ed.), Blome Sandra (ed.), Bussmann Bianca M. (ed.). FLI, German Federal Research Institute for Animal Health. Berlin : Friedrich-Loeffler-Institut, Résumé, p. 32. EPIZONE Annual Meeting. 13, Berlin, Allemagne, 26 Août 2019/28 Août 2019.

Habitat characteristics and species interference influence space use and nest-site occupancy: implications for social variation in two sister species. Dufour Claire M.S., Pillay Neville, Avenant Nico, Watson Johan, Loire Etienne, Ganem Guila. 2019. Oikos, 128 (4) : 503-516.

Identification of Eilat virus and prevalence of infection among Culex pipiens L. populations, Morocco, 2016. Bennouna Amal, Gil Patricia, El Rhaffouli Hicham, Exbrayat Antoni, Loire Etienne, Balenghien Thomas, Chlyeh Ghita, Gutierrez Serafin, Fassi-Fihri Ouafaa. 2019. Virology, 530 : 85-88.

Nanopore-based detection and characterization of yam viruses. Filloux Denis, Fernandez Emmanuel, Loire Etienne, Claude Lisa, Galzi Serge, Candresse Thierry, Winter Stephan, Jeeva M.L., Makeshkumar T., Martin Darren Patrick, Roumagnac Philippe. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, 53. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 Janvier 2019/31 Janvier 2019.

Reforzar el diálogo en sanidad global: conectar las redes regionales de investigación en los países en desarrollo. Roger François, De Romemont Aurelle, Binot Aurélie, Loire Etienne, Girard Philippe. 2019. Perspective (53) : 1-4.

Renforcer le dialogue en santé globale : connecter les réseaux régionaux de recherche au Sud. Roger François, De Romemont Aurelle, Binot Aurélie, Loire Etienne, Girard Philippe. 2019. Perspective (53) : 1-4.

Strengthening the global health dialogue: linking research networks in the Global South. Roger François, De Romemont Aurelle, Binot Aurélie, Loire Etienne, Girard Philippe. 2019. Perspective (53) : 1-4.

A library preparation optimized for metagenomics of RNA viruses. Gil Patricia, Dupuy Virginie, Koual Rachid, Loire Etienne, Exbrayat Antoni, Rakotoarivony Ignace, Fall Assane Gueye, Gimonneau Geoffrey, Marie Albane, Francés Benoit, Lambert Grégory, Reveillaud Julie, Gardes Laëtitia, Balenghien Thomas, Garros Claire, Albina Emmanuel, Gutierrez Serafin. 2019. In : 13th EPIZONE Annual Meeting "Breaking Walls" - Abstract Book. Mettenleiter Thomas C. (ed.), Beer Martin (ed.), Conraths Franz J. (ed.), Blome Sandra (ed.), Bussmann Bianca M. (ed.). FLI, German Federal Research Institute for Animal Health. Berlin : Friedrich-Loeffler-Institut, Résumé, p. 154. EPIZONE Annual Meeting. 13, Berlin, Allemagne, 26 Août 2019/28 Août 2019.

Conserved virome diversity and structure in the mosquito vector Culex pipiens. P15. Gil Patricia, Rakotoarivony Ignace, Loire Etienne, Marie Albane, Francés Benoit, Lambert Grégory, Busquets-Martí Núria, Birnberg Lotty, Talavera Sandra, Aranda Carles, Bessat Mohamed, Otify Yehia, Mansini Giuseppe, Goffredo Maria, Ayari Emna, Mejri Selma, Muth Erika, Cheval Justine, De Visser Louise, Lamany Arnaud, Cabannes Eric, Hebert Charles, Eloit Marc, Gutierrez Serafin. 2018. In : Book of abstract Pathobiome 2018. INRA. Ajaccio : INRA, Résumé, 41-42. Pathobiome, Ajaccio, France, 18 Mars 2018/20 Mars 2018.

Genomics of sexual isolation and reinforcement in a secondary hybrid zone between two subspecies of the house mouse. Smadja Carole, Ganem Guila, Boursot Pierre, Caminade Pierre, Tusso Sergio, Loire Etienne. 2018. . Montpellier : ESEB, Résumé, 1 p. Joint Congress on Evolutionary Biology, Montpellier, France, 19 Août 2018/22 Août 2018.

Immunomodulatory effects of Amblyomma variegatum saliva on bovine cells: Characterization of cellular responses and identification of molecular determinants. Rodrigues Valérie, Fernandez Bernard, Vercoutere Arthur, Chamayou Léo, Andersen Alexandre, Vigy Oana, Demettre Edith, Seveno Martial, Aprelon Rosalie, Giraud-Girard Ken, Stachurski Frédéric, Loire Etienne, Vachiéry Nathalie, Holzmuller Philippe. 2018. Frontiers in Cellular and Infection Microbiology, 7:521, 18 p.

Influence of host species and habitat on the mosquito virome. Gutierrez Serafin, Gil Patricia, Fall Assane Gueye, Biteye Biram, Gimonneau E., Seck Momar Talla, Loire Etienne, Muth Erika, Cheval Justine, De Visser Louise, Lamany Arnaud, Cabannes Eric, Hebert Charles, Eloit Marc. 2018. . ASV. College Park : ASV, 1 p. Annual Meeting of the American Society for Virology (ASV 2018). 37, College Park, États-Unis, 14 Juillet 2018/18 Juillet 2018.

Nanopore-based detection and characterization of yam viruses. Filloux Denis, Fernandez Emmanuel, Loire Etienne, Claude Lisa, Galzi Serge, Candresse Thierry, Winter Stephan, Jeeva M.L., Makeshkumar T., Martin Darren Patrick, Roumagnac Philippe. 2018. Scientific Reports, 8:17879, 11 p.

Tick-bacteria mutualism depends on B vitamin synthesis pathways. Duron Olivier, Morel Olivier, Noel Valérie, Buysse Marie, Binetruy Florian, Lancelot Renaud, Loire Etienne, Ménard Claudine, Bouchez Olivier, Vavre Fabrice, Vial Laurence. 2018. Current Biology, 28 (12):e5 : 1896-1902.e5.

Variations of genes copy number in populations of Bluetongue-virus. Moreau Yannis, Breard Emmanuel, Gil Patricia, Loire Etienne, Gutierrez Serafin. 2018. . Montpellier : ESEB, Résumé, 1 p. Joint Congress on Evolutionary Biology, Montpellier, France, 19 Août 2018/22 Août 2018.

The genomic basis of color pattern polymorphism in the harlequin ladybird. Gautier Mathieu, Yamaguchi Junichi, Foucaud Julien, Loiseau Anne, Ausset Aurélien, Facon Benoît, Gschloessl Bernhard, Lagnel Jacques, Loire Etienne, Parrinello Hugues, Severac Dany, Lopez-Roques Céline, Donnadieu Cécile, Manno Maxime, Berges Hélène, Gharbi Karim, Lawson-Handley Lori, Zang Lian-Sheng, Vogel Heiko, Estoup Arnaud, Prud'homme Benjamin. 2018. Current Biology, 28 (20):e7 : 3296-3302.

Do changes in gene expression contribute to sexual isolation and reinforcement in the house mouse? Loire Etienne, Tusso Sergio, Caminade Pierre, Severac Dany, Boursot Pierre, Ganem Guila, Smadja Carole. 2017. Molecular Ecology, 26 (19) : 5189-5202.

First detection of a Mesonivirus in Culex pipens in five countries around the Mediterranean basin. Gil Patricia, Rakotoarivony Ignace, Loire Etienne, Marie Albane, Francés Benoit, L'Ambert Grégory, Busquets-Martí Núria, Birnberg Lotty, Talavera Sandra, Carlos Aranda, Bessat Mohamed, Otify Yehia, Mansini Giuseppe, Goffredo Maria, Ayari Emna, Mejri Selma, Muth Erika, Cheval Justine, De Visser Louise, Lamany Arnaud, Cabannes Eric, Hebert Charles, Eloit Marc, Gutierrez Serafin. 2017. In : Abstract book of the 11th Epizone Annual Meeting welcome in Paris. ANSES. Paris : ANSES, Résumé, 27. Annual Meeting EPIZONE: Crossing barriers. 11, Paris, France, 19 Septembre 2017/21 Septembre 2017.

The virome of the mosquito vector Culex pipiens. Gil Patricia, Rakotoarivony Ignace, Loire Etienne, Marie Albane, Francés Benoit, L'Ambert Grégory, Busquets-Martí Núria, Birnberg Lotty, Talavera Sandra, Carlos Aranda, Bessat Mohamed, Otify Yehia, Mansini Giuseppe, Goffredo Maria, Ayari Emna, Mejri Selma, Muth Erika, Cheval Justine, De Visser Louise, Lamany Arnaud, Cabannes Eric, Hebert Charles, Eloit Marc, Gutierrez Serafin. 2017. , Résumé, 1 p. Annual Meeting of the American Society for Virology. 36, Madison, États-Unis, 24 Juin 2017/28 Juin 2017.

Virome characterization of Culex pipiens in France through metagenomic analysis: a new virus discovered. P3. Gil Patricia, Rakotoarivony Ignace, L'Ambert Grégory, Marie Albane, Francés Benoit, Loire Etienne, Koual Rachid, Gutiérrez Serafin, Albina Emmanuel. 2016. In : Programme and abstracts EPIZONE Going Viral. EPIZONE, INIA. Madrid : EPIZONE, 92. Annual Meeting EPIZONE Going Viral. 10, Madrid, Espagne, 27 Septembre 2016/29 Septembre 2016.

Seeking signatures of reinforcement at the genetic level: a hitchhiking mapping and candidate gene approach in the house mouse. Smadja Carole, Loire Etienne, Caminade Pierre, Thoma Marios, Latour Yasmin, Roux Camille, Thoss Michaela, Penn Dustin J., Ganem Guila, Boursot Pierre. 2015. Molecular Ecology, 24 (16) : 4222-4237.

Comparative population genomics in animals uncovers the determinants of genetic diversity. Romiguier Jonathan, Gayral Philippe, Ballenghien Marion, Bernard Aurélien, Cahais Vincent, Chenuil A., Chiari Ylenia, Dernat R., Duret Laurent, Faivre Nicolas, Loire Etienne, Lourenco Joao M., Nabholz Benoit, Roux C., Tsagkogeorga G., Weber A.A.T., Weinert Lucy Anne, Belkhir Khalid, Bierne Nicolas, Glemin Sylvain, Galtier Nicolas. 2014. Nature, 515 (7526) : 261-263.

Population genomics of eusocial insects: the costs of a vertebrate-like effective population size. Romiguier Jonathan, Lourenco Joao M., Gayral Philippe, Faivre Nicolas, Weinert Lucy Anne, Ravel Sébastien, Ballenghien Marion, Cahais Vincent, Bernard Aurélien, Loire Etienne, Keller Laurent, Galtier Nicolas. 2014. Journal of Evolutionary Biology, 27 (3) : 593-603.

Population genomics of the endangered giant Galápagos tortoise. Loire Etienne, Chiari Ylenia, Bernard Aurélien, Cahais Vincent, Romiguier Jonathan, Nabholz Benoit, Lourenco Joao M., Galtier Nicolas. 2013. Genome Biology, 14 (12) : R136.

Reference-free population genomics from next-generation transcriptome data and the vertebrate–invertebrate gap. Gayral Philippe, Melo-Ferreira José, Glemin Sylvain, Bierne Nicolas, Carneiro Miguel, Nabholz Benoit, Lourenco Joao M., Alves Paulo, Ballenghien Marion, Faivre Nicolas, Belkhir Khalid, Cahais Vincent, Loire Etienne, Bernard Aurélien, Galtier Nicolas. 2013. PLoS Genetics, 9 (4):e1003457, 15 p.

The coupling hypothesis: why genome scans may fail to map local adaptation genes. Bierne Nicolas, Welch John, Loire Etienne, Bonhomme François, David Patrice. 2011. Molecular Ecology, 20 (10) : 2044-2072.

Hypermutability of genes in Homo sapiens due to the hosting of long mono-SSR. Loire Etienne, Praz Françoise, Higuet Dominique, Netter Pierre, Achaz Guillaume. 2009. Molecular Biology and Evolution, 26 (1) : 111-121.

Nonsense-mediated mRNA decay impacts MSI-driven carcinogenesis and anti-tumor immunity in colorectal cancers. El-Bchiri Jamila, Guilloux Agathe, Dartigues Peggy, Loire Etienne, Mercier Dominique, Buhard Olivier, Sobhani Iradj, De la Grange Pierre, Auboeuf Didier, Praz Françoise, Fléjou Jean-François, Duval Alex. 2008. PloS One, 3 (7):e2583, 10 p.