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Number of items: 29.

Journal article

Heterogeneity of the rice microbial community of the Chinese centuries-old Honghe Hani rice terraces system. Alonso Pascal, Blondin Laurence, Gladieux Pierre, Mahe Frédéric, Sanguin Hervé, Ferdinand Romain, Filloux Denis, Desmarais Eric, Cerqueira Frédérique, Jin Baihui, Huang Huichuan, He Xiahong, Morel Jean-Benoit, Martin Darren Patrick, Roumagnac Philippe, Vernière Christian. 2020. Environmental Microbiology, 17 p.
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The belowground bacterial and fungal communities differed in their significance as microbial indicator of Moroccan carob habitats. Khassali Hamza, Baumel Alex, Mahe Frédéric, Tournier Estelle, Tisseyre Pierre, Prin Yves, Ouahmane Lahcen, Sanguin Hervé. 2020. Ecological Indicators, 114:106341, 9 p.
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How deep can ectomycorrhizas go? A case study on Pisolithus down to 4 meters in a Brazilian eucalypt plantation. Robin Agnès, Pradier Céline, Sanguin Hervé, Mahe Frédéric, Lambais George Rodrigues, de Araujo Pereira Arthur Prudêncio, Germon Amandine, Cintra Santana Maiele, Tisseyre Pierre, Pablo Anne-laure, Heuillard Pauline, Sauvadet Marie, Bouillet Jean-Pierre, Dini Andreote Fernando, Plassard Claude, De Moraes Gonçalves Jose Leonardo, Bran Nogueira Cardoso Elke Jurandy, Laclau Jean-Paul, Hinsinger Philippe, Jourdan Christophe. 2019. Mycorrhiza, 29 (6) : pp. 637-648.
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The rhizosphere microbiome: A key component of sustainable cork oak forests in trouble. Maghnia Fatima Zahra, Abbas Younes, Mahe Frédéric, Prin Yves, El Ghachtouli Naima, Duponnois Robin, Sanguin Hervé. 2019. Forest Ecology and Management, 434 : pp. 29-39.
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Clarifying the relationships between microsporidia and cryptomycota. Bass David, Czech Lucas, Williams Bryony A. P., Berney Cédric, Dunthorn Micah, Mahe Frédéric, Torruella Guifré, Stentiford Grant D., Williams Tom A.. 2018. Journal of Eukaryotic Microbiology, 65 (6) : pp. 773-782.
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Consistent patterns of high alpha and low beta diversity in tropical parasitic and free-living protists. Lentendu Guillaume, Mahé Frédéric, Bass David, Rueckert Sonja, Stoeck Thorsten, Dunthorn Micah. 2018. Molecular Ecology, 27 (13) : pp. 2846-2857.
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Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages. Morard Raphaël, Garet-Delmas Marie-José, Mahé Frédéric, Romac Sarah, Poulain Julie, Kucera Michal, de Vargas Colomban. 2018. Scientific Reports, 8:2539, 10 p.
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Transcriptome profiles of nod factor-independent symbiosis in the tropical legume Aeschynomene evenia. Gully Djamel, Czernic Pierre, Cruveiller Stéphane, Mahé Frédéric, Longin Cyrille, Vallenet David, François Philippe, Nidelet Sabine, Rialle Stéphanie, Giraud Eric, Arrighi Jean-François, DasGupta Maitrayee, Cartieaux Fabienne. 2018. Scientific Reports, 8:10934, 12 p.
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Worldwide occurrence and activity of the reef-building coral symbiont Symbiodinium in the open ocean. Decelle Johan, Carradec Quentin, Pochon Xavier, Henry Nicolas, Romac Sarah, Mahé Frédéric, Dunthorn Micah, Kourlaiev Artem, Voolstra Christian R., Wincker Patrick, de Vargas Colomban. 2018. Current Biology, 28 (22):e3 : pp. 3625-3633.
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Habitat- and soil-related drivers of the root-associated fungal community of Quercus suber in the Northern Moroccan forest. Maghnia Fatima Zahra, Abbas Younes, Mahé Frédéric, Kerdouh Benaissa, Tournier Estelle, Ouadji Mohamed, Tisseyre Pierre, Prin Yves, El Ghachtouli Naima, Bakkali-Yakhlef Salahedine, Duponnois Robin, Sanguin Hervé. 2017. PloS One, 12 (11):e0187758, 17 p.
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Meiotic genes in colpodean ciliates support secretive sexuality. Dunthorn Micah, Zufall Rebecca A., Chi Jingyun, Paszkiewicz Konrad, Moore Karen, Mahé Frédéric. 2017. Genome Biology and Evolution, 9 (6) : pp. 1781-1787.
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Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests. Mahé Frédéric, de Vargas Colomban, Bass David, Czech Lucas, Stamatakis Alexandro, Lara Enrique, Singer David, Mayor Jordan, Bunge John, Sernaker Sarah, Siemensmeyer Tobias, Trautmann Isabelle, Romac Sarah, Berney Cédric, Kozlov Alexey, Mitchell Edward A. D., Seppey Christophe V. W., Egge Elianne, Lentendu Guillaume, Wirth Rainer, Trueba Gabriel, Dunthorn Micah. 2017. Nature Ecology and Evolution, 1 (4):0091, 8 p.
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UniEuk: Time to speak a common language in protistology! Berney Cédric, Ciuprina Andreea, Bender Sara, Brodie Juliet, Edgcomb Virginia, Kim Eunsoo, Rajan Jeena, Wegener Parfrey Laura, Adl Sina, Audic Stéphane, Bass David, Caron David, Cochrane Guy, Czech Lucas, Dunthorn Micah, Geisen Stefan, Glöckner Franck Olivier, Mahé Frédéric, Quast Christian, Kaye Jonathan Z., Simpson Alastair G.B., Stamatakis Alexandro, del Campo Javier, Yilmaz Pelin, de Vargas Colomban. 2017. Journal of Eukaryotic Microbiology, 64 (3) : pp. 407-411.
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Yeasts dominate soil fungal communities in three lowland Neotropical rainforests. Dunthorn Micah, Kauserud Håvard, Bass David, Mayor Jordan, Mahé Frédéric. 2017. Environmental Microbiology Reports, 9 (5) : pp. 668-675.
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VSEARCH: a versatile open source tool for metagenomics. Rognes Torbjørn, Flouri Tomás, Nichols Ben, Quince Christopher, Mahe Frédéric. 2016. PeerJ, 4 (e2584), 22 p.
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Book chapter

The repetitive content in lupin genomes. Ainouche Abdelkader, Paris Aurore, Giraud Delphine, Keller Jean, Raimondeau Pauline, Mahe Frédéric, Neuman Pavel, Novak Petr, Macas Jiri, Ainouche Malika Lily, Salmon Armel, Martin Guillaume. 2020. In : The lupin genome. Singh Karam B. (ed.), Kamphuis Lars G. (ed.), Nelson Matthew N. (ed.). Cham : Springer, pp. 161-186. (Compendium of Plant Genomes) ISBN 978-3-030-21269-8
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Paper with proceedings

In the intimacy of an old Mediterranean affair between a fruit tree and a microbiota: perspectives in conservation and agroecology. Sanguin Hervé, Mahe Frédéric, Ouahmane Lahcen, Khassali Hamza, Tournier Estelle, Tisseyre Pierre, Geoffroy Alexandre, Le Roux Christine, Prin Yves, Hafidi Mohamed, Hugot Laetitia, Diadema Katia, Mirleau Fatma, Nieto-Feliner Gonzalo, Bou Dagher Kharrat Magda, La Malfa Stefano, Médail Frédéric, Viruel Juan, Baumel Alex. 2019. In : Dedicated to the origins of agriculture and the domestication, evolution and utilization of genetic resources. Abstracts book. IRD, Bioversity International, Agropolis International, CIRAD, Montpellier SupAgro, Université de Montpellier, INRA. Montpellier : IRD, Résumé, p. 133. Jack R. Harlan International Symposium. 3, Montpellier, France, 3 June 2019/7 June 2019.
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How deep can ectomycorrhizae go? A case study down to 4 meter depth in a Brazilian Eucalyptus plantation under rainfall reduction. Robin Agnès, Pradier Céline, Sanguin Hervé, Mahe Frédéric, Lambais George Rodrigues, de Araujo Pereira Arthur Prudêncio, Germon Amandine, Cintra Maiele, Tisseyre Pierre, Pablo Anne-laure, Heuillard Pauline, Saudavet Marie, Bouillet Jean-Pierre, Androte Fernando Dini, Plassard Claude, Bran Nogueira Cardoso Elke Jurandy, Laclau Jean-Paul, Hinsinger Philippe, Jourdan Christophe. 2018. In : Eucalyptus 2018: Managing Eucalyptus plantation under global changes. Abstracts book. CIRAD, IUFRO, MUSE. Montpellier : CIRAD, Résumé, pp. 38-39. ISBN 978-2-87614-743-0 Eucalyptus 2018, Montpellier, France, 17 September 2018/21 September 2018.
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South Green, une plateforme de bioinformatique tournée vers l'agriculture dans les pays du sud. Ravel Sébastien, Bocs Stéphanie, Brousseau Louise, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, Larmande Pierre, Mahé Frédéric, Martin Guillaume, Orjuela-Bouniol Julie, Pitollat Bertrand, Rouard Mathieu, Ruiz Manuel, Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, Tando Ndomassi, Tranchant-Dubreuil Christine. 2018. In : JOBIM 2018 Abstracts. SFBI, GdR BiM, IFB, AMU, INSERM, CNRS. Marseille : SFBI, pp. 418-420. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2018), Marseille, 3 July 2018/6 July 2018.
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Poster

South Green bioinformatic resources for tropical and Mediterranean crops. Rouard Mathieu, Bocs Stéphanie, Breton Catherine, Comte Aurore, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, Larmande Pierre, Lopez David, Mahe Frédéric, Martin Guillaume, Orjuela-Bouniol Julie, Pitollat Bertrand, Ravel Sébastien, Ruiz Manuel, Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, Tando Ndomassi, Tranchant-Dubreuil Christine. 2020. . SFBI, IFB, GDR-BIM. Montpellier : SFBI, 1 p. Journées ouvertes de biologie, informatique et mathématique (JOBIM 2020). 20, Montpellier, France, 30 June 2020/3 July 2020.
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Development of MetaXplor: a viral metagenomics database. P29. Filloux Denis, Petel Adrien, Sempere Guilhem, Claverie Sohini, Lefeuvre Pierre, Mahe Frédéric, Roumagnac Philippe. 2018. In : Book of abstract Pathobiome 2018. INRA. Ajaccio : INRA, Résumé, p. 50. Pathobiome, Ajaccio, France, 18 March 2018/20 March 2018.
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Development of a multigenic metabarcoding protocol for deciphering the diversity of plant-associated Archaea. [144]. Pieretti Isabelle, Mahe Frédéric, Alonso Pascal, Blondin Laurence, Roumagnac Philippe, Vernière Christian. 2018. In : Book of abstract of the International Phytobiomes Conference 2018. International Phytobiomes Alliance, INRA, IRD. Montpellier : International Phytobiomes Alliance-INRA, p. 68. International phytobiomes conference. 2, Montpellier, France, 4 December 2018/6 December 2018.
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Rice genetic diversity and microbiome characterization of a centuries-old Chinese rice agro-system. Alonso Pascal, Filloux Denis, Blondin Laurence, Mahe Frédéric, Fournier Elisabeth, Gladieux Pierre, Ducasse Aurélie, Morel Jean-Benoit, Mournet Pierre, Huang Huichuan, Jin Baihui, He Xiahong, Ferdinand Romain, Fernandez Emmanuel, Vernière Christian, Roumagnac Philippe. 2018. In : Book of abstract of the International Phytobiomes Conference 2018. International Phytobiomes Alliance, INRA, IRD. Montpellier : International Phytobiomes Alliance-INRA, p. 48. International phytobiomes conference. 2, Montpellier, France, 4 December 2018/6 December 2018.
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The human-driven impacts on a long-term affair between an iconic Mediterranean fruit tree and its microbiome. Sanguin Hervé, Mahe Frédéric, Ouahmane Lahcen, Tisseyre Pierre, Tournier Estelle, Khassali Hamza, Le Roux Christine, Prin Yves, Miche Lucie, Mirleau Pascal, Duponnois Robin, Arrighi Jean-François, Hafidi Mohamed, Ouhammou A., Vincentelli Bruno, Anziani Carole, Hugo Laetitia, Diadema Katia, Feliner Gonzalo Nieto, Mirleau Fatma, Bou Dagher Kharrat Magda, La Malfa Stefano, Médail Frédéric, Viruel Juan, Baumel Alex. 2018. In : Book of abstract of the International Phytobiomes Conference 2018. International Phytobiomes Alliance, INRA, IRD. Montpellier : International Phytobiomes Alliance-INRA, p. 71. International phytobiomes conference. 2, Montpellier, France, 4 December 2018/6 December 2018.
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Development of bioinformatics tools for sequence data mining and virus discovery. [P40]. Filloux Denis, Petel Adrien, Sempere Guilhem, Claverie Sohini, Lefeuvre Pierre, Mahe Frédéric, Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, p. 101. Rencontres de virologie végétale, Aussois, France, 15 January 2017/19 January 2017.
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A fungal community-based high throughput approach to determine ecological bio-indicators of Moroccan cork oak decline. Maghnia Fatima Zahra, Mahe Frédéric, Bakkali-Yakhlef Salahedine, Kerdouh Benaissa, Ouajdi M., Prin Yves, El Ghachtouli Naima, Duponnois Robin, Abbas Younes, Sanguin Hervé. 2016. In : EcoSummit 2016 - Ecological Sustainability: Engineering Change. Montpellier : INRA-IRD, 1 poster International EcoSummit Congress 2016. 5, Montpellier, France, 29 August 2016/1 September 2016.
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Paper without proceedings

What are the ecological drivers of symbiotic microbiome assemblages? The case of an antic affair between an iconic Mediterranean fruit tree and its symbiotic microbiome. Mahé Frédéric, Tisseyre Pierre, Tournier Estelle, Khassali Hamza, Le Roux Christine, Geoffroy Alexandre, Mirleau Pascal, Miché L., Arrighi Jean-François, Duponnois Robin, Hafidi Mohamed, Ouhammou A., Vincentelli Bruno, Anziani Carole, Hugot Laetitia, Diadema Katia, Feliner Gonzalo Nieto, Viruel Juan, Médail Frédéric, Bou Dagher Kharrat Magda, La Malfa Stefano, Prin Yves, Ouahmane Lahcen, Baumel Alex, Sanguin Hervé. 2018. In : Booklet of Sfécologie 2018. Société Française d'Écologie et d'Évolution. Rennes : Société Française d'Écologie et d'Évolution, Résumé, pp. 300-301. International Conference on Ecological Sciences : Sfécologie 2018, Rennes, France, 22 October 2018/25 October 2018.
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Are mycorrhizal-bacterial community networks impacted by the sexual type of their host tree? Sanguin Hervé, Mahe Frédéric, Tisseyre Pierre, Tournier Estelle, Ouahmane Lahcen, Le Roux Christine, Duponnois Robin, Médail Frédéric, Dagher-Kharrat Magda Bou, La Malfa Stefano, Baumel Alex, Prin Yves. 2016. In : Sfécologie 2016. Marseille : Sfé, Résumé, 1 p. International Conference on Ecological Sciences, Marseille, France, 24 October 2016/28 October 2016.
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Thesis

Phylogénie, éléments transposables et évolution de la taille des génomes chez les lupins. Mahé Frédéric. 2009. Rennes : Université de Rennes 1, 252 p. Thèse de doctorat : Biologie : Université de Rennes 1
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This list was generated on Sun Sep 20 09:58:48 2020 CEST.