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Alternative oxidase (AOX) constitutes a small family of proteins in Citrus clementina and Citrus sinensis L. Osb

Araújo Castro Jacqueline, Drielle Gomes Ferreira Monique, Santana Silva Raner José, Andrade Bruno Silva, Micheli Fabienne. 2017. Alternative oxidase (AOX) constitutes a small family of proteins in Citrus clementina and Citrus sinensis L. Osb. PloS One, 12 (5):e0176878, 17 p.

Journal article ; Article de recherche ; Article de revue à facteur d'impact Revue en libre accès total
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Url - jeu de données : https://figshare.com/articles/Alternative_oxidase_AOX_constitutes_a_small_family_of_proteins_in_i_Citrus_clementina_i_and_i_Citrus_sinensis_i_L_Osb/4957955

Quartile : Q1, Sujet : MULTIDISCIPLINARY SCIENCES

Liste HCERES des revues (en SHS) : oui

Thème(s) HCERES des revues (en SHS) : Psychologie-éthologie-ergonomie; Staps

Abstract : The alternative oxidase (AOX) protein is present in plants, fungi, protozoa and some invertebrates. It is involved in the mitochondrial respiratory chain, providing an alternative route for the transport of electrons, leading to the reduction of oxygen to form water. The present study aimed to characterize the family of AOX genes in mandarin (Citrus clementina) and sweet orange (Citrus sinensis) at nucleotide and protein levels, including promoter analysis, phylogenetic analysis and C. sinensis gene expression. This study also aimed to do the homology modeling of one AOX isoform (CcAOXd). Moreover, the molecular docking of the CcAOXd protein with the ubiquinone (UQ) was performed. Four AOX genes were identified in each citrus species. These genes have an open reading frame (ORF) ranging from 852 bp to 1150 bp and a number of exons ranging from 4 to 9. The 1500 bp-upstream region of each AOX gene contained regulatory cis-elements related to internal and external response factors. CsAOX genes showed a differential expression in citrus tissues. All AOX proteins were predicted to be located in mitochondria. They contained the conserved motifs LET, NERMHL, LEEEA and RADE-H as well as several putative post-translational modification sites. The CcAOXd protein was modeled by homology to the AOX of Trypanosona brucei (45% of identity). The 3-D structure of CcAOXd showed the presence of two hydrophobic helices that could be involved in the anchoring of the protein in the inner mitochondrial membrane. The active site of the protein is located in a hydrophobic environment deep inside the AOX structure and contains a diiron center. The molecular docking of CcAOXd with UQ showed that the binding site is a recessed pocket formed by the helices and submerged in the membrane. These data are important for future functional studies of citrus AOX genes and/or proteins, as well as for biotechnological approaches leading to AOX inhibition using UQ homologs. (Résumé d'auteur)

Mots-clés Agrovoc : Citrus, Citrus sinensis, Oxydoréductase, Gène, Identification, Génétique moléculaire, Séquence nucléotidique, Protéine, Phylogénie, Expression des gènes, Modèle, Bioinformatique, Trypanosoma brucei, Physiologie végétale

Mots-clés géographiques Agrovoc : Bahia, France

Mots-clés complémentaires : Citrus clementina, Promoteur

Classification Agris : F30 - Plant genetics and breeding
F60 - Plant physiology and biochemistry

Champ stratégique Cirad : Axe 1 (2014-2018) - Agriculture écologiquement intensive

Auteurs et affiliations

  • Araújo Castro Jacqueline, UESC (BRA)
  • Drielle Gomes Ferreira Monique, UESC (BRA)
  • Santana Silva Raner José, UESC (BRA)
  • Andrade Bruno Silva, UESB (BRA)
  • Micheli Fabienne, CIRAD-BIOS-UMR AGAP (BRA)

Source : Cirad-Agritrop (https://agritrop.cirad.fr/584286/)

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