Résultats pour : "séquence nucléotidique"

2024 taxonomy update for the family Circoviridae. Varsani Arvind, Harrach Balázs, Roumagnac Philippe, Benkő Mária, Breitbart Mya, Delwart Eric, Franzo Giovanni, Kazlauskas Darius, Rosario Karyna, Segalés Joaquim, Dunay Emily, Rukundo Joshua, Goldberg Tony L., Fehér Enikő, Kaszab Eszter, Bányai Krisztián, Krupovic Mart. 2024. Archives of Virology, 169:176, 23 p.

Alternative double strand break repair pathways shape the evolution of high recombination in the honey bee, Apis mellifera. Fouks Bertrand, Miller Kathleen J., Ross Caitlin, Jones Corbin, Rueppell Olav. 2024. Insect Molecular Biology, 18 p.

Characterization of six ampeloviruses infecting pineapple in Reunion Island using a combination of high-throughput sequencing approaches. Massé Delphine, Candresse Thierry, Filloux Denis, Massart Michel, Cassam Nathalie, Hostachy Bruno, Marais Armelle, Fernandez Emmanuel, Roumagnac Philippe, Verdin Eric, Teycheney Pierre-Yves, Lett Jean-Michel, Lefeuvre Pierre. 2024. Viruses, 16 (7):1146, 17 p.

Comparative transcriptomics reveals a highly polymorphic Xanthomonas HrpG virulence regulon. Monnens Thomas Quiroz, Roux Brice, Cunnac Sébastien, Charbit Erika, Carrère Sébastien, Lauber Emmanuelle, Jardinaud Marie-Françoise, Darrasse Armelle, Arlat Mathieu, Szurek Boris, Pruvost Olivier, Jacques Marie Agnès, Gagnevin Lionel, Koebnik Ralf, Noel Laurent D., Boulanger Alice. 2024. BMC Genomics, 25:777, 17 p.

Current species of oomycetes associated with foot rot disease of black pepper in Vietnam. Thao Le Dinh, Khanh Tran Ngoc, Van Liem Nguyen, Hien Le Thu, Thanh Ha Minh, Binh Vu Thi Phuong, Thu Trang Thieu Thi, Anh Pham Thi, Van Chung Nguyen, Hien Pham Hong, Van Long Nguyen, Quang Duy Nguyen, Lesueur Didier, Herrmann Laetitia, Bräu Lambert. 2024. Tropical Plant Pathology, 16 p.

DNA transposons favor de novo transcript emergence through enrichment of transcription factor binding motifs. Lebherz Marie Kristin, Fouks Bertrand, Schmidt Julian, Bornberg-Bauer Erich, Grandchamp Anna. 2024. Genome Biology and Evolution, 16 (7), 16 p.

Target enrichment sequencing coupled with GWAS identifies MdPRX10 as a candidate gene in the control of budbreak in apple. Watson Amy E., Guitton Baptiste, Soriano Alexandre, Rivallan Ronan, Vignes Hélène, Farrera Isabelle, Huettel Bruno, Arnaiz Catalina, da Silveira Falavigna Vítor, Coupel-Ledru Aude, Segura Vincent, Sarah Gautier, Dufayard Jean François, Sidibe-Bocs Stéphanie, Costes Evelyne, Andres Fernando. 2024. Frontiers in Plant Science, 15:1352757, 19 p.

Whole-genome sequencing and comparative genomics reveal candidate genes associated with quality traits in Dioscorea alata. Zotta Mota Ana, Dossa Komivi, Lechaudel Mathieu, Cornet Denis, Mournet Pierre, Santoni Sylvain, Lopez David, Chaïr Hâna. 2024. BMC Genomics, 25:248, 17 p.

The invasive land flatworm Arthurdendyus triangulatus has repeated sequences in the mitogenome, extra-long cox2 gene and paralogous nuclear rRNA clusters. Gastineau Romain, Lemieux Claude, Turmel Monique, Otis Christian, Boyle Brian, Coulis Mathieu, Gouraud Clément, Boag Brian, Murchie Archie, Winsor Leigh, Justine Jean-Lou. 2024. Scientific Reports, 14:7840, 15 p.

African army ants at the forefront of virome surveillance in a remote tropical forest. Fritz Matthieu, Reggiardo Bérénice, Filloux Denis, Claude Lisa, Fernandez Emmanuel, Mahe Frédéric, Kraberger Simona, Custer Joy M., Becquart Pierre, Mebaley Telsta Ndong, Kombila Linda Bohou, Lenguiya Léadisaelle H., Boundenga Larson, Mombo Illich M., Maganga Gaël Darren, Niama Fabien R., Koumba Jean-Sylvain, Ogliastro Mylène, Yvon Michel, Martin Darren Patrick, Blanc Stéphane, Varsani Arvind, Leroy Eric M., Roumagnac Philippe. 2023. Peer Community Journal, 3:e24, 21 p.

Benchmarking of virome metagenomic analysis approaches using a large, 60+ members, viral synthetic community. Schönegger Deborah, Moubset Oumaima, Margaria Paolo, Menzel Wulf, Winter Stephan, Roumagnac Philippe, Marais Armelle, Candresse Thierry. 2023. Journal of Virology, 97 (11), 20 p.

Cannabis virome reconstruction and antiviral RNAi characterization through small RNA sequencing. Miotti Niccolo, Sukhikh Natalia, Laboureau Nathalie, Casati Paola, Pooggin Mikhail. 2023. Plants, 12 (23), n.spéc. Different Aspects of Plant Viral Metagenomics:3925, 12 p.

Chimeras in Merlot grapevine revealed by phased assembly. Sichel V., Sarah Gautier, Girollet N., Laucou V., Roux C., Roques M., Mournet Pierre, Le Cunff Loïc, Bert P.F., This Patrice, Lacombe Thierry. 2023. BMC Genomics, 24:396, 22 p.

Endogenous caulimovirids: Fossils, zombies, and living in plant genomes. Vassilieff Héléna, Geering Andrew D., Choisne Nathalie, Teycheney Pierre-Yves, Maumus Florian. 2023. Biomolecules, 13 (7):1069, 18 p.

Evaluation of 96‐well high‐throughput DNA extraction methods for 16S rRNA gene metabarcoding. Chapuis Marie-Pierre, Benoit Laure, Galan Maxime. 2023. Molecular Ecology Resources, 23 (7) : 1509-1525.

Genetic diversity, evolution, and diagnosis of sugarcane yellow leaf virus from 19 sugarcane-producing locations worldwide. Rott Philippe, Grinstead Samuel, Dallot Sylvie, Foster Zachary S. L., Daugrois Jean-Heinrich, Fernandez Emmanuel, Kaye Claudia, Hendrickson Leticia, Hu Xiaojun, Adhikari Bishwo, Malapi Martha, Grunwald Niklaus J., Roumagnac Philippe, Mollov Dimitre S.. 2023. Plant Disease, 10711 : 3437-3447.

Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes. Wang Zheng-Feng, Rouard Mathieu, Droc Gaëtan, Heslop Harrison Pat, Ge Xue-Jun. 2023. GigaScience, 12, 20 p.

Genome-wide development of intra- and inter-specific transferable SSR markers and construction of a dynamic web resource for yam molecular breeding: Y2MD. Diouf Moussa, Bovys Zoclanclounon Yedomon Ange, Mboup Pape Adama Mboup, Diouf Diaga, Maledon Erick, Rivallan Ronan, Chair Hanâ, Dossa Komivi. 2023. Plant Genome:e20428, 18 p.

Marker-assisted pyramiding of blast-resistance genes in a japonica elite rice cultivar through forward and background selection. Zampieri Elisa, Volante Andrea, Maré Caterina, Orasen Gabriele, Desiderio Francesca, Biselli Chiara, Canella Marco, Carmagnola Lorena, Milazzo Joëlle, Adreit Henri, Tharreau Didier, Poncelet Nicolas, Vaccino Patrizia, Valè Giampiero. 2023. Plants, 12 (4), n.spéc. Advances in Genetics and Breeding of Grain Crops:757, 17 p.

Molecular detection of Loxodontofilaria spp. in Asian elephants (Elephas maximus) from elephant training camps in Thailand. Saengsawang Phirabhat, Desquesnes Marc, Yangtara Sarawut, Chalermwong Piangjai, Thongtip Nikorn, Jittapalapong Sathaporn, Inpankaew Tawin. 2023. Comparative Immunology, Microbiology and Infectious Diseases, 92:101910, 8 p.

Molecular diversity of yam virus Y and identification of banana mild mosaic virus isolates infecting yam (Dioscorea spp.). Diouf Mame Boucar, Guyader Sébastien, Nopoly Marie-Michelle, Gaspard Olyvia, Filloux Denis, Candresse Thierry, Marais Armelle, Teycheney Pierre-Yves, Umber Marie. 2023. Archives of Virology, 168:180, 8 p.

Targeted high-throughput sequencing enables the detection of single nucleotide variations in CRISPR/Cas9 gene-edited organisms. Fraiture Marie-Alice, D’aes Jolien, Guiderdoni Emmanuel, Meunier Anne Cecile, Delcourt Thomas, Hoffman Stefan, Vandermassen Els, De Keersmaecker Sigrid C. J., Vanneste Kevin, Roosens Nancy. 2023. Foods, 12 (3) : 1-14.

The compact genome of the sponge Oopsacas minuta (Hexactinellida) is lacking key metazoan core genes. Santini Sébastien, Schenkelaars Quentin, Jourda Cyril, Duchesne Marc, Belahbib Hassiba, Rocher Caroline, Selva Marjorie, Riesgo Ana, Vervoort Michel, Leys Sally P., Kodjabachian Laurent, Le Bivic André, Borchiellini Carole, Claverie Jean-Michel, Renard Emmanuelle. 2023. BMC Biology, 21:139, 21 p.

CROWN ROOTLESS1 binds DNA with a relaxed specificity and activates OsROP and OsbHLH044 genes involved in crown root formation in rice. Gonin Mathieu, Jeong Kwanho, Coudert Yoan, Lavarenne Jeremy, Hoang Giang Thi, Bes Martine, To Huong Thi Mai, Thiaw Marie-Rose Ndella, Do Toan Van, Moukouanga Daniel, Guyomarc'h Soazig, Bellande Kevin, Brossier Jean-Rémy, Parizot Boris, Nguyen Hieu Trang, Beeckman Tom, Bergougnoux Véronique, Rouster Jacques, Sallaud Christophe, Laplaze Laurent, Champion Anthony, Gantet Pascal. 2022. Plant Journal, 111 (2) : 546-566.

Complete genome sequence of a novel marafivirus infecting pearl millet in Burkina Faso. Palanga Essowé, Tibiri Ezechiel Bionimian, Bangratz Martine, Filloux Denis, Julian Charlotte, Pinel-Galzi Agnès, Koala Moustapha, Bouma Neya James, Brugidou Christophe, Tiendrebeogo Fidèle, Roumagnac Philippe, Hebrard Eugénie. 2022. Archives of Virology, 167 : 145-148.

Genome characterization and complete sequence of a new badnavirus from Pandanus amaryllifolius. Alvarez-Quinto Robert A., Grinstead Samuel, Rott Philippe, Mollow Dimitre. 2022. Archives of Virology, 167 : 1717-1720.

Identification of a novel vitivirus from pineapple in Reunion Island. Massé Delphine, Filloux Denis, Candresse Thierry, Massart Sébastien, Marals Armelle, Verdin Eric, Cassam Nathalie, Fernandez Emmanuel, Roumagnac Philippe, Teycheney Pierre-Yves, Lefeuvre Pierre, Lett Jean-Michel. 2022. Archives of Virology, 167 : 2355-2357.

PanExplorer: A web-based tool for exploratory analysis and visualization of bacterial pan-genomes. Dereeper Alexis, Summo Marilyne, Meyer Damien. 2022. Bioinformatics, 38 (18) : 4412-4414.

Spodoptera littoralis genome mining brings insights on the dynamic of expansion of gustatory receptors in polyphagous noctuidae. Meslin Camille, Mainet Pauline, Montagné Nicolas, Robin Stéphanie, Legeai Fabrice, Bretaudeau Anthony, Johnston J Spencer, Koutroumpa Fotini, Persyn Emma, Monsempès Christelle, François Marie-Christine, Jacquin-Jolyb Emmanuelle. 2022. G3 - Genes Genomes Genetics, 12 (8):jkac131, 12 p.

Wild boars as reservoir of highly virulent clone of hybrid shiga toxigenic and enterotoxigenic Escherichia coli responsible for edema disease, France. Perrat Alexandre, Branchu Priscilla, Decors Anouk, Turci Silvia, Bayon-Auboyer Marie-Hélène, Petit Geoffrey, Grosbois Vladimir, Brugère Hubert, Auvray Frédéric, Oswald Eric. 2022. Emerging Infectious Diseases, 28 (2) : 382-393.

A curated dataset of peste des petits ruminants virus sequences for molecular epidemiological analyses. Baron Michael D., Bataille Arnaud. 2022. PloS One, 17 (2):e0263616, 22 p.

ddPCR strategy to detect a gene-edited plant carrying a single variation point: Technical feasibility and interpretation issues. Fraiture Marie-Alice, Guiderdoni Emmanuel, Meunier Anne Cecile, Papazova Nina, Roosens Nancy. 2022. Food Control, 137:108904, 10 p.

The rice ILI2 locus is a bidirectional target of the African Xanthomonas oryzae pv. oryzae major transcription activator-like effector TalC but does not contribute to disease susceptibility. Doucoure Hinda, Auguy Florence, Baufume Servane, Fabre Sandrine, Gabriel Marc, Thomas Emilie, Dambreville Fleur, Sciallano Coline, Szurek Boris, Koita Ousmane, Verdier Valérie, Cunnac Sébastien. 2022. International Journal of Molecular Sciences, 23 (10):5559, 20 p.

Contribution of historical herbarium small RNAs to the reconstruction of a cassava mosaic geminivirus evolutionary history. Rieux Adrien, Campos Paola, Duvermy Arnaud, Scussel Sarah, Martin Darren Patrick, Gaudeul Myriam, Lefeuvre Pierre, Becker Nathalie, Lett Jean-Michel. 2021. Scientific Reports, 11 (1):21280, 12 p.

DILS: Demographic inferences with linked selection by using ABC. Fraïsse Christelle, Popovic Iva, Mazoyer Clément, Spataro Bruno, Delmotte Stéphane, Romiguier Jonathan, Loire Etienne, Simon Alexis, Galtier Nicolas, Duret Laurent, Bierne Nicolas, Vekemans Xavier, Roux Camille. 2021. Molecular Ecology Resources, 21 (8), n.spéc. : 2629-2644.

Free-living, psychrotrophic bacteria of the Genus Psychrobacter are descendants of pathobionts. Welter Daphne K., Ruaud Albane, Henseler Zachariah M., De Jong Hannah N., Van Coeverden de Groot Peter, Michaux Johan, Gormezano Linda, Waters Jillian L., Youngblut Nicholas D., Ley Ruth E.. 2021. mSystems, 6 (2), 20 p.

Genome characterization and diversity of trifolium virus 1: identification of a novel legume-infecting capulavirus. Ma Yuxin, Svanella‑Dumas Laurence, Julian Charlotte, Galzi Serge, Fernandez Emmanuel, Yvon Michel, Pirolles Elodie, Lefebvre Marie, Filloux Denis, Roumagnac Philippe, Candresse Thierry. 2021. Archives of Virology, 166 : 2573-2578.

Global range expansion history of pepper (Capsicum spp.) revealed by over 10,000 genebank accessions. Tripodi Pasquale, Rabanus-Wallace Mark Timothy, Barchi Lorenzo, Kale Sandip, Esposito Salvatore, Acquadro Alberto, Schafleitner Roland, Van Zonneveld Maarten, Prohens Jaime, Diez Maria José, Börner Andreas, Salinier Jérémy, Caromel Bernard, Bovy Arnaud, Boyaci Filiz, Pasev Gancho, Brandt Ronny, Himmelbach Axel, Portis Ezio, Finkers Richard, Lanteri Sergio, Paran Ilan, Lefebvre Véronique, Giuliano Giovanni, Stein Nils. 2021. Proceedings of the National Academy of Sciences of the United States of America, 118 (34):e2104315118, 9 p.

GreenPhylDB v5: A comparative pangenomic database for plant genomes. Guignon Valentin, Toure Abdel, Droc Gaëtan, Dufayard Jean François, Conte Matthieu, Rouard Mathieu. 2021. Nucleic Acids Research, 49 (D1) : D1464-D1471.

High-resolution temporal transcriptome sequencing unravels ERF and WRKY as the master players in the regulatory networks underlying sesame responses to waterlogging and recovery. Wang Linhai, Dossa Komivi, You Jun, Zhang Yanxin, Li Donghua, Zhou Rong, Yu Jingyin, Wei Xin, Zhu Xiaodong, Jiang Shiyang, Gao Yuan, Mmadi Marie Ali, Zhang Xiurong. 2021. Genomics, 113 (1) : 276-290.

Identification and distribution of novel badnaviral sequences integrated in the genome of cacao (Theobroma cacao). Muller Emmanuelle, Ullah Ihsa, Dunwell Jim M., Daymond Andrew J., Richardson Megan, Allainguillaume Joel, Wetten Andrew. 2021. Scientific Reports, 11:8270, 13 p.

Pangenome of white lupin provides insights into the diversity of the species. Hufnagel Maciel Bárbara, Soriano Alexandre, Taylor Jemma, Divol Fanchon, Kroc Magdalena, Sanders Heather, Yeheyis Likawent, Nelson Matthew, Péret Benjamin. 2021. Plant Biotechnology Journal, 19 (12) : 2532-2543.

Tomato interveinal yellowing virus: A novel tomato-infecting monopartite begomovirus from Côte d'Ivoire. N'Cho Anthelme Jocelin, Seka Koutoua, Hoareau Murielle, Konan Arthur, Fondio Lassina, Lefeuvre Pierre, Martin Thibaud, Coulibaly Noupe, Lett Jean-Michel. 2021. Archives of Virology, 166 : 1755-1758.

High-quality genome sequence of white lupin provides insight into soil exploration and seed quality. Hufnagel Maciel Bárbara, Marques André, Soriano Alexandre, Marquès Laurence, Divol Fanchon, Doumas Patrick, Sallet Erika, Mancinotti Davide, Carrère Sébastien, Marande William, Arribat Sandrine, Keller Jean, Huneau Cécile, Blein Thomas, Aimé Delphine, Laguerre Malika, Taylor Jemma, Schubert Veit, Nelson Matthew, Geu-Flores Fernando, Crespi Martin, Gallardo Karine, Delaux Pierre-Marc, Salse Jérôme, Berges Hélène, Guyot Romain, Gouzy Jérôme, Péret Benjamin. 2020. Nature Communications, 11:492, 12 p.

Sorghum mastrevirus-associated alphasatellites: New geminialphasatellites associated with an African streak mastrevirus infecting wild Poaceae plants on Reunion Island. Claverie Sohini, Varsani Arvind, Hoareau Murielle, Filloux Denis, Roumagnac Philippe, Martin Darren Patrick, Lefeuvre Pierre, Lett Jean-Michel. 2020. Archives of Virology, 165 (8) : 1925-1928.

The glutathione peroxidase family of Theobroma cacao: Involvement in the oxidative stress during witches' broom disease. Martins Alves Akyla Maria, Pereira Menezes Reis Sara, Peres Gramacho Karina, Micheli Fabienne. 2020. International Journal of Biological Macromolecules, 164 : 3698-3708.

EST-SSR development for Digitaria exilis and its relatives D. iburua and D. longiflora from transcriptome sequences. Olodo Katina Floride, Gueye Mame Codou, Calatayud Caroline, Diop Baye Magatte, Kane Ndjido Ardo, Ngom Ablaye, Ntui Valentine O., Barreto Marie-Madeleine S., Uyoh Edak A., Abraham Salomon, Vigouroux Yves, Billot Claire, Barnaud Adeline. 2019. Plant Genetic Resources, 17 (3) : 280-284.

Evolution of attenuation and risk of reversal in Peste des Petits Ruminants vaccine strain Nigeria 75/1. Eloiflin Roger-Junior, Boyer Marie, Kwiatek Olivier, Guendouz Samia, Loire Etienne, Servan de Almeida Renata, Libeau Geneviève, Bataille Arnaud. 2019. Viruses, 11 (8):724, 18 p.

High bacterial diversity in nearshore and oceanic biofilms and their influence on larval settlement by Hydroides elegans (Polychaeta). Lema Kimberley A., Constancias Florentin, Rice Scott A., Hadfield Michael G.. 2019. Environmental Microbiology, 21 (9), n.spéc. Our Microbial Overlords: Microbial Control of Host Behaviour : 3472-3488.

High‑throughput sequencing of complete genomes of ipomoviruses associated with an epidemic of cassava brown streak disease in the Comoros Archipelago. Scussel Sarah, Candresse Thierry, Marais Armelle, Claverie Sohini, Hoareau Murielle, Azali Hamza Abdou, Verdin Eric, Tepfer Mark, Filloux Denis, Fernandez Emmanuel, Roumagnac Philippe, Robene Isabelle, Lefeuvre Pierre, Jourda Cyril, Roux-Cuvelier Michel, Lett Jean-Michel. 2019. Archives of Virology, 164 (8) : 2193-2196.

Identification and characterization of Xanthomonas albilineans causing sugarcane leaf scald in China using multilocus sequence analysis. Ntambo Mbuya Sylvain, Meng Jian-Yu, Rott Philippe, Royer Monique, Lin L. H., Zhang Hui-Li, Gao San-Ji. 2019. Plant Pathology, 68 (2) : 269-277.

Molecular detection and phylogenetic analysis of Peste des petits ruminants virus circulating in small ruminants in eastern Amhara region, Ethiopia. Alemu Biruk, Gari Getachew, Libeau Geneviève, Kwiatek Olivier, Kidane Menbere, Belayneh Rediet, Siraw Bewuket, Wieland Barbara, Asfaw Wondwoson, Abdi Reta D.. 2019. BMC Veterinary Research, 15:84, 9 p.

Trait-based life-history strategies explain succession scenario for complex bacterial communities under varying disturbance. Santillan Ezequiel, Seshan Hari, Constancias Florentin, Wuertz Stefan. 2019. Environmental Microbiology, 21 (10) : 3751-3764.

Yam genomics supports West Africa as a major cradle of crop domestication. Scarcelli Nora, Cubry Philippe, Akakpo Roland, Thuillet Anne-Céline, Obidiegwu Jude, Baco Mohamed N., Otoo Emmanuel, Sonké Bonaventure, Dansi Alexandre, Djedatin Gustave, Mariac Cédric, Couderc Marie, Causse Sandrine, Alix Karine, Chaïr Hâna, François Olivier, Vigouroux Yves. 2019. Science Advances, 5 (5):eaaw1947, 7 p.

Autosomal and mitochondrial adaptation following admixture: a case study on the honeybees of Reunion Island. Wragg David, Techer Maéva Angélique, Canale-Tabet Kamila, Basso Benjamin, Bidanel Jean-Pierre, Labarthe Emmanuelle, Bouchez Olivier, Le Conte Yves, Clémencet Johanna, Delatte Hélène, Vignal Alain. 2018. Genome Biology and Evolution, 10 (1) : 220-238.

Complete genome sequence of a lineage II Peste des Petits Ruminants virus from Sierra Leone. Dundon William G., Adombi Caroline Mélanie, Kanu Saidu, Loitsch Angelika, Cattoli Giovanni, Diallo Adama. 2018. Genome Announcements, 6 (1):e01417-17, 2 p.

First report and genomic sequence of a new alfalfa marafivirus from France. Nemchinov Lev G., François Sarah, Roumagnac Philippe, Mollov Dimitre S., Filloux Denis. 2018. Phytopathology, 108 (10S), p. S1.188 International Congress of Plant Pathology (ICPP2018). 11, Boston, États-Unis, 29 Juillet 2018/3 Août 2018.

High-resolution genetic map and QTL analysis of growth-related traits of Hevea brasiliensis cultivated under suboptimal temperature and humidity conditions. Conson Andre R.O., Taniguti Cristiane H., Amadeu Rodrigo R., Andreotti Isabela A.A., de Souza Lívia Moura, dos Santos Luciano H. B., Rosa João Ricardo Bachega Feijó, Mantello Camilia Campos, Da Silva Carla Cristina, José Scaloppi Junior Erivaldo, Ribeiro Rafael Vasconcelos, Le Guen Vincent, Garcia Antonio Augusto Franco, Gonçalves Paulo De Souza, de Souza Anete Pereira. 2018. Frontiers in Plant Science, 9:1255, 16 p.

Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean. Chen Nicolas W.G., Serres-Giardi Laurana, Ruh Mylène, Briand Martial, Bonneau Sophie, Darrasse Armelle, Barbe Valérie, Gagnevin Lionel, Koebnik Ralf, Jacques Marie Agnès. 2018. BMC Genomics, 19:606, 20 p.

Nanopore-based detection and characterization of yam viruses. Filloux Denis, Fernandez Emmanuel, Loire Etienne, Claude Lisa, Galzi Serge, Candresse Thierry, Winter Stephan, Jeeva M.L., Makeshkumar T., Martin Darren Patrick, Roumagnac Philippe. 2018. Scientific Reports, 8:17879, 11 p.

Next generation sequencing elucidates cacao badnavirus diversity and reveals the existence of more than ten viral species. Muller Emmanuelle, Ravel Sébastien, Agret Clément, Abrokwah Francis, Dzahini-Obiatey Henry, Galyuon I., Kouakou K., Jeyaseelan E.C., Allainguillaume Joel, Wetten Andrew. 2018. Virus Research, 244 : 235-251.

Nonhuman primates across sub-Saharan Africa are infected with the yaws bacterium Treponema pallidum subsp. pertenue. Knauf Sascha, Gogarten Jan F., Schuenemann Verena J., De Nys Hélène, Düx Ariane, Strouhal Michal, Mikalová Lenka, Bos Kirsten I., Armstrong Roy, Batamuzi Emmanuel K., Chuma Idrissa S., Davoust Bernard, Diatta Georges, Fyumagwa Robert, Kazwala Reuben R., Keyyu Julius, Lejora Inyasi A. V., Levasseur Anthony, Liu Hsi, Mayhew Michael A., Mediannikov Oleg, Raoult Didier, Wittig Roman M., Roos Christian, Leendertz Fabian Hubertus, Smajs David, Nieselt Kay, Krause Johannes, Calvignac-Spencer Sébastien. 2018. Emerging Microbes and Infections, 7 (1) : 1-4.

Rice diversity panel provides accurate genomic predictions for complex traits in the progenies of biparental crosses involving members of the panel. Ben Hassen Manel, Cao Tuong-Vi, Bartholome Jérôme, Orasen Gabriele, Colombi C., Rakotomalala J., Razafinimpiasa Lisy, Bertone C., Biselli Chiara, Volante Andrea, Desiderio Francesca, Jacquin Laval, Valè Giampiero, Ahmadi Nourollah. 2018. Theoretical and Applied Genetics, 131 (2) : 417-435.

A15 Rapid radiation of treponema pallidum pertenue in wild non-human primates. Düx Ariane, Schuenemann Verena J., Gogarten Jan F., De Nys Hélène, Nieselt Kay, Mayhew Michael A., Leendertz Fabian Hubertus, Calvignac-Spencer Sébastien, Krause Johannes. 2017. Virus Evolution, 3, suppl. 1 : p. 56. International Bioinformatics Workshop on Virus Evolution and Molecular Epidemiology (VEME). 21, Séoul, 14 Août 2016/16 Septembre 2016.

Adaptation of genetically monomorphic bacteria: evolution of copper resistance through multiple horizontal gene transfers of complex and versatile mobile genetic elements. Richard Damien, Ravigné Virginie, Rieux Adrien, Facon Benoît, Boyer Claudine, Boyer Karine, Grygiel Pierre, Javegny Stéphanie, Terville Marie Annabelle, Canteros B.I., Robene Isabelle, Vernière Christian, Chabirand Aude, Pruvost Olivier, Lefeuvre Pierre. 2017. Molecular Ecology, 26 (7), n.spéc. Microbial Local Adaptation : 2131-2149.

Alternative oxidase (AOX) constitutes a small family of proteins in Citrus clementina and Citrus sinensis L. Osb. Araújo Castro Jacqueline, Drielle Gomes Ferreira Monique, Santana Silva Raner José, Andrade Bruno Silva, Micheli Fabienne. 2017. PloS One, 12 (5):e0176878, 17 p.

Changes in anthocyanin production during domestication of Citrus. Butelli Eugenio, Garcia-Lor Andrés, Licciardello Concetta, Las Casas Giuseppina, Hill Lionel, Reforgiato Giuseppe, Keremane Manjunath, Ramadugu Chandrika, Krueger Robert, Xu Qiang, Deng Xiuxin, Fanciullino Anne Laure, Froelicher Yann, Navarro Luis, Martin Cathie. 2017. Plant Physiology, 173 (4) : 2225-2242.

Comparative analysis of core collection sampling methods for mandarin germplasm based on molecular and phenotypic data. Garcia-Lor Andrés, Luro François, Ollitrault Patrick, Navarro Luis. 2017. Annals of Applied Biology, 171 (3) : 327-339.

Complete genome sequences of six copper-resistant Xanthomonas citri pv. citri strains causing Asiatic citrus canker, obtained using long-read technology. Richard Damien, Boyer Claudine, Vernière Christian, Canteros B.I., Lefeuvre Pierre, Pruvost Olivier. 2017. Genome Announcements, 5 (12):e00010-17, 2 p.

Complete genome sequences of six copper-resistant Xanthomonas strains causing bacterial spot of solaneous plants, Bblonging to X. gardneri, X. euvesicatoria, and X. vesicatoria, using long-read technology. Richard Damien, Boyer Claudine, Lefeuvre Pierre, Canteros B.I., Beni-Madhu Shyam, Portier Perrine, Pruvost Olivier. 2017. Genome Announcements, 5 (8):e01693-16, 2 p.

Construction of two genetic linkage maps of taro using single nucleotide polymorphism and microsatellite markers. Soulard Laurent, Mournet Pierre, Guitton Baptiste, Chaïr Hâna. 2017. Molecular Breeding, 37 (3):37, 15 p.

Cyanobacteria as source of marine bioactive compounds: Molecular specific detection based on Δ9 desaturase gene. Ben Amor Faten, Barkallah Mohamed, Elleuch Fatma, Karkouch Nesrine, Dammak Mouna, Baréa Bruno, Villeneuve Pierre, Abdelkafi Slim, Fendri Imen. 2017. International Journal of Biological Macromolecules, 105 (Part 2) : 1440-1445.

Development of SNP markers present in expressed genes of the plant-pathogen interaction: Theobroma cacao - Moniliophtora perniciosa. Lemos Lívia Santos Lima, Gramacho Karina Peres, Pires José Luis, Ferreira Santos Rogério Mercês, Ganem Rodrigo Sousa, Costa Marcio Gilberto Cardoso, Micheli Fabienne. 2017. AgroTropica, 29 (2) : 111-118.

Diversité et origine génétique des espèces de la sous famille des Aurantioideae et décryptage des structures interspécifiques des génomes des agrumes modernes. Oueslati Bahri Amel. 2017. Tunis : Université de Tunis El Manar, 200 p. Thèse de doctorat : Biologie. Génétique et biologie moléculaire : Université de Tunis El Manar

Do changes in gene expression contribute to sexual isolation and reinforcement in the house mouse? Loire Etienne, Tusso Sergio, Caminade Pierre, Severac Dany, Boursot Pierre, Ganem Guila, Smadja Carole. 2017. Molecular Ecology, 26 (19) : 5189-5202.

Evolution of the banana genome (Musa acuminata) is impacted by large chromosomal translocations. Martin Guillaume, Carreel Françoise, Coriton Olivier, Hervouet Catherine, Cardi Céline, Derouault Paco, Roques Danièle, Salmon Frédéric, Rouard Mathieu, Sardos Julie, Labadie Karine, Baurens Franc-Christophe, D'Hont Angélique. 2017. Molecular Biology and Evolution, 34 (9), 28 p.

Experimental evaluation of faecal Escherichia coli and hepatitis E virus as biological indicators of contacts between domestic pigs and Eurasian wild boar. Barth S., Geue L., Hinsching A., Jenckel M., Schlosser J., Eiden Martin, Pietschmann J., Menge Christian, Beer Martin, Groschup Martin, Jori Ferran, Etter Eric, Blome S.. 2017. Transboundary and Emerging Diseases, 64 (2) : 487-494.

Exploiting genetic information to trace plant virus dispersal in landscapes. Picard Coralie, Dallot Sylvie, Brunker Kirstyn, Berthier Karine, Roumagnac Philippe, Soubeyrand Samuel, Jacquot Emmanuel, Thébaud Gaël. 2017. Annual Review of Phytopathology, 55 : 139-160.

First report of maize yellow mosaic virus infecting maize in Burkina Faso. Palanga Essowé, Longué R.D.S., Koala Moustapha, Néya J.B., Traoré Oumar, Martin Darren Patrick, Peterschmitt Michel, Filloux Denis, Roumagnac Philippe. 2017. New Disease Reports, 35 : p. 26.

Genome sequences of a capulavirus infecting Plantago lanceolata in the Aland archipelago of Finland. Susi Hanna, Laine Anna-Liisa, Filloux Denis, Kraberger Simona, Farkas Kata, Bernardo Pauline, Frilander Mikko J., Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2017. Archives of Virology, 162 (7) : 2041-2045.

Genome sequencing of the sweetpotato whitefly Bemisia tabaci MED/Q. Xie Wen, Chen Chunhai, Yang Zezhong, Guo Litao, Yang Xin, Wang Dan, Chen Ming, Huang Jinqun, Wen Yanan, Zeng Yang, Liu Yating, Xia Jixing, Tian Lixia, Cui Hongying, Wu Qingjun, Wang Shaoli, Wu Baoyun, Li Xianchiun, Tan Xinqiu, Ghanim Murad, Qiu Baoli, Pan Huipeng, Chu Dong, Delatte Hélène, Maruthi M.N., Ge Feng, Zhou Xueping, Wang Xiaowei, Wan Fang-Hao, Du Yuzhou, Luo Chen, Yan Fengming, Preisser Evan L., Jiao Xiaoguo, Coates Brad S., Zhao Jinyang, Gao Qiang, Xia Jinquan, Yin Ye, Liu Yong, Brown Judith, Zhou Xuguo-Joe, Zhang Youjun. 2017. GigaScience, 6 (5), 7 p.

Genome-wide identification and characterization of cacao WRKY transcription factors and analysis of their expression in response to witches' broom disease. Silva Monteiro de Almeida Dayanne, Do Amaral Daniel Oliveira Jordão, Del-Bem Luiz-Eduardo, Bronze dos Santos Emily, Santana Silva Raner José, Peres Gramacho Karina, Vincentz Michel, Micheli Fabienne. 2017. PloS One, 12 (10):e0187346, 23 p.

Genotyping by sequencing reveals the interspecific C. maxima / C. reticulata admixture along the genomes of modern citrus varieties of mandarins, tangors, tangelos, orangelos and grapefruits. Oueslati Amel, Salhi-Hannachi Amel, Luro François, Vignes Hélène, Mournet Pierre, Ollitrault Patrick. 2017. PloS One, 12 (10):e0185618, 22 p.

Le génome du cacaoyer : du décodage de sa séquence jusqu'à l'étude de gènes impliqués dans des caractères agronomiques d'intérêt. Argout Xavier. 2017. Montpellier : Montpellier SupAgro, 238 p. Thèse de doctorat : Biologie, interactions, diversité adaptative des plantes : Montpellier SupAgro

Liver microbiome of Peromyscus leucopus, a key reservoir host species for emerging infectious diseases in North America. André A., Mouton Alice, Millien Virginie, Michaux Johan. 2017. Infection, Genetics and Evolution, 52 : 10-18.

Molecular mechanisms in the first step of aba-mediated response in Coffea ssp. Guitton Cotta Michelle. 2017. Montpellier : Montpellier SupAgro, 176 p. Thèse de doctorat : Biologie intégrative des plantes : Montpellier SupAgro

New strains of chickpea chlorotic dwarf virus discovered on diseased papaya and tomato plants in Burkina Faso. Ouattara Alassane, Tiendrebeogo Fidèle, Lefeuvre Pierre, Hoareau Murielle, Claverie Sohini, Traoré Edgar Valentin, Barro Nicolas, Traoré Oumar, Varsani Arvind, Lett Jean-Michel. 2017. Archives of Virology, 162 (6) : 1791-1794.

Phytophthora megakarya and Phytophthora palmivora, closely related causal agents of cacao black pod rot, underwent increases in genome sizes and gene numbers by different mechanisms. Ali Shahin, Shao Jonathan, Lary David J., Kronmiller Brent A., Shen Danyu, Strem Mary, Amoako-Attah Ishmael, Yaw Akrofi Andrew, Begoude Dider, Ten Hoopen Gerben Martijn, Coulibaly Klotioloma, Kébé Boubacar Ismaël, Melnick Rachel L., Guiltinan Mark J., Tyler Brett, Meinhardt Lyndel W., Bailey Bryan. 2017. Genome Biology and Evolution, 9 (3) : 536-557.

The evolutionary fate of the chloroplast and nuclear rps16 genes as revealed through the sequencing and comparative analyses of four novel legume chloroplast genomes from Lupinus. Keller J., Rousseau-Gueutin Mathieu, Martin Guillaume, Morice Jérôme, Boutte Julien, Coissac E., Ourari M., Ainouche Malika Lily, Salmon Armel, Cabello-Hurtado F., Ainouche Abdelkader. 2017. DNA Research, 24 (4) : 343-358.

A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives. Sarah Gautier, Homa Félix, Pointet Stéphanie, Contreras Sandy, Sabot François, Nabholz Benoit, Santoni Sylvain, Sauné Laure, Ardisson Morgane, Chantret Nathalie, Sauvage Christopher, Tregear James, Jourda Cyril, Pot David, Vigouroux Yves, Chaïr Hâna, Scarcelli Nora, Billot Claire, Yahiaoui Nabila, Bacilieri Roberto, Khadari Bouchaib, Boccara Michel, Barnaud Adeline, Péros Jean-Pierre, Labouisse Jean-Pierre, Pham Jean Louis, David Jacques, Glemin Sylvain, Ruiz Manuel. 2017. Molecular Ecology Resources, 17 (3) : 565-580.

The trouble with MEAM2: Implications of pseudogenes on species delimitation in the globally invasive Bemisia tabaci (Hemiptera: Aleyrodidae) cryptic species complex. Tay Wee Tek, Elfekih S., Court L.N., Gordon Karl H.J., Delatte Hélène, De Barro Paul. 2017. Genome Biology and Evolution, 9 (10) : 2732-2738.

Analyse de la diversité génétique des isolats de Magnaporthe oryzae du Burkina Faso et du Togo par les marqueurs microsatellites (SSRs). Kassankogno Abalo Itolou, Ouedraogo Ibrahima, Adreit Henri, Milazzo Joëlle, Ouédraogo Léonard, Sankara Philippe, Tharreau Didier. 2016. International Journal of Biological and Chemical Sciences, 10 (5) : 2259-2267.

Ancient and modern DNA reveal dynamics of domestication and cross-continental dispersal of the dromedary. Almathen Faisal, Charruau Pauline, Mohandesan Elmira, Mwacharo Joram M., Orozco-terWengel Pablo, Pitt Daniel, Abdussamad Abdussamad M., Uerpmann Margarethe, Uerpmann Hans-Peter, De Cupere Bea, Magee Peter, Alnaqeeb Majed A., Salim Bashir, Raziq Abdul, Dessie Tadelle, Abdelhadi Omer M.A., Banabazi Mohammad H., Al-Eknah Marzouk, Walzer Chris, Faye Bernard, Hofreiter Michael, Peters Joris, Hanotte Olivier, Burger Pamela A.. 2016. Proceedings of the National Academy of Sciences of the United States of America, 113 (24) : 6707-6712.

Combining conservative and variable markers to infer the evolutionary history of Prunus subgen. Amygdalus s.l. under domestication. Delplancke Malou, Yazbek Mariana, Arrigo Nils, Espindola Anahi, Joly Hélène, Alvarez Nadir. 2016. Genetic Resources and Crop Evolution, 63 (2) : 221-234.

Development of single nucleotide polymorphism markers in the large and complex rubber tree genome using next-generation sequence data. Moura De Souza Livia, Toledo-Silva Guilherme, Cardoso-Silva Claudio Benicio, Da Silva Carla Cristina, De Araujo Andreotti Isabella, Oliveira Conson André Ricardo, Mantello Camilia Campos, Le Guen Vincent, Pereira de Souza Anete. 2016. Molecular Breeding, 36 (8):115, 10 p.

Draft genome sequences of nine strains of Ralstonia solanacearum differing in virulence to eggplant (Solanum melongena). Guinard Jérémy, Vinatzer Boris A., Poussier Stéphane, Lefeuvre Pierre, Wicker Emmanuel. 2016. Genome Announcements, 4 (1):e01415, 15 p.

Dynamics of bacterial community composition in the malaria mosquito's epithelia. Tchioffo Majoline T., Boissiere Anne, Abate Luc, Nsango Sandrine E., Bayibéki Albert N., Awono-Ambéné Parfait, Christen Richard, Gimonneau Geoffrey, Morlais Isabelle. 2016. Frontiers in Microbiology, 6 (1500), 9 p.

Emergence of lineage IV peste des petits ruminants virus in Ethiopia: Complete genome sequence of an Ethiopian isolate 2010. Muniraju Murali, Mahapatra Mana, Ayelet Gelagay, Babu A., Olivier G., Munir M., Libeau Geneviève, Batten Carrie, Banyard Ashley C., Parida Satya. 2016. Transboundary and Emerging Diseases, 63 (4) : 435-442.

Evolutionary dynamics of the Leucine-Rich Repeats Receptor-Like Kinase (LRR-RLK) subfamily in angiosperms. Fischer Iris, Diévart Anne, Droc Gaëtan, Dufayard Jean François, Chantret Nathalie. 2016. Plant Physiology, 170 (3) : 1595-1610.

First microsatellite markers developed from Cupuassu ESTs: Application in diversity analysis and cross-species transferability to cacao. Ferraz dos Santos Lucas, Moreira Fregapani Roberta, Falcão Loeni Ludke, Togawa Roberto Coiti, Costa Marcos Mota do Carmo, Lopes Uilson Vanderlei, Peres Gramacho Karina, Alves Rafael Moyses, Micheli Fabienne, Marcellino Lucilia Helena. 2016. PloS One, 11 (3):e0151074, 19 p.

Genome-wide investigation of hsf genes in sesame reveals their segmental duplication expansion and their active role in drought stress response. Dossa Komivi, Diouf Diaga, Cissé Ndiaga. 2016. Frontiers in Plant Science, 7:1522, 16 p.

Geographic differentiation and population genetic structure of Moniliophthora roreri in the principal cocoa production areas in Colombia. Jaimes Yeirme, Gonzalez Carolina, Rojas Jairo, Cornejo Omar E., Mideros Maria F., Restrepo Silvia, Cilas Christian, Furtado Edson L.. 2016. Plant Disease, 100 (8) : 1548-1558.

High-quality draft genome sequences of two Xanthomonas pathotype strains infecting aroid plants. Robène Isabelle, Bolot Stéphanie, Pruvost Olivier, Arlat Mathieu, Noel Laurent D., Carrère Sébastien, Jacques Marie Agnès, Koebnik Ralf, Gagnevin Lionel. 2016. Genome Announcements, 4 (5):e00902-16, 2 p.

Improvement of the banana Musa acuminata reference sequence using NGS data and semi-automated bioinformatics methods. Martin Guillaume, Baurens Franc-Christophe, Droc Gaëtan, Rouard Mathieu, Cenci Alberto, Kilian Andrzej, Hastie Alex, Dolezelova M., Aury Jean-Marc, Alberti Adriana, Carreel Françoise, D'Hont Angélique. 2016. BMC Genomics, 17 (243), 12 p.

Mapping QTLs for Black pod (Phytophthora palmivora) resistance in three hybrid progenies of cocoa (Theobroma cacao L.) using SSR markers. Akaza Joseph Moroh, Kouassi Abou Bakari, Akaffou Doffou Sélastique, Fouet Olivier, N'Guetta Assanvo Simon-Pierre, Lanaud Claire. 2016. International Journal of Scientific and Research Publications, 6 (1) : 298-311.

Metagenomic-based screening and molecular characterization of cowpea-infecting viruses in Burkina Faso. Palanga Essowé, Filloux Denis, Martin Darren Patrick, Fernandez Emmanuel, Gargani Daniel, Ferdinand Romain, Zabré Jean, Bouda Zakaria, Neya Bouma, Sawadogo Mahamadou, Traoré Oumar, Peterschmitt Michel, Roumagnac Philippe. 2016. PloS One, 11 (10):e0165188, 21 p.

Ongoing geographical spread of Tomato yellow leaf curl virus. Mabvakure Batsirai, Martin Darren Patrick, Kraberger Simona, Cloete Leendert, van Brunschot Sharon, Geering Andrew D., Thomas John, Bananej Kaveh, Lett Jean-Michel, Lefeuvre Pierre, Varsani Arvind, Harkins Gordon William. 2016. Virology, 498 : 257-264.

Plastid phylogenetics of Oceania yams (Dioscorea spp., Dioscoreaceae) reveals natural interspecific hybridization of the greater yam (D. alata). Chaïr Hâna, Sardos Julie, Supply Anthea, Mournet Pierre, Malapa Roger, Lebot Vincent. 2016. Botanical Journal of the Linnean Society, 180 (3) : 319-333.

Reappraisal of Hydatigera taeniaeformis (Batsch, 1786) (Cestoda: Taeniidae) sensu lato with description of Hydatigera kamiyai n. sp. Lavikainen Antti, Iwaki Takashi, Haukisalmi Voitto, Konyaev Sergey V., Casiraghi Maurizio, Dokuchaev Nikolai E., Galimberti Andrea, Halajian Ali, Henttonen Heikki, Ichikawa-Seki Madoka, Itagaki Tadashi, Krivopalov Anton V., Meri Seppo, Morand Serge, Näreaho Anu, Olsson Gert E., Ribas Alexis, Terefe Yitagele, Nakao Minoru. 2016. International Journal for Parasitology, 46 (5-6) : 361-374.

Shotgun sequencing of the mitochondrial genome of the Aldabra giant tortoise (Aldabrachelys gigantea). Besnard Guillaume, Thèves Catherine, Mata Xavier, Holota Hélène, Rakotozafy Lucien M.A., Pedrono Miguel. 2016. Mitochondrial DNA. Part A, 27 (6) : 4543-4544.

Subtelomere organization in the genome of the microsporidian Encephalitozoon cuniculi: Patterns of repeated sequences and physicochemical signatures. Dia Ndongo, Lavie Laurence, Faye Ngor, Méténier Guy, Yeramian Edouard, Duroure Christophe, Toguebaye B.S., Frutos Roger, Niang Mbayame N., Vivares Christian, Ben Mamoun Choukri, Cornillot Emmanuel. 2016. BMC Genomics, 17 (34), 20 p.

Towards a molecular taxonomic key of the Aurantioideae subfamily using chloroplastic SNP diagnostic markers of the main clades genotyped by competitive allele-specific PCR. Oueslati Amel, Ollitrault Frédérique, Baraket Ghada, Salhi-Hannachi Amel, Navarro Luis, Ollitrault Patrick. 2016. BMC Genetics, 17 (118), 14 p.

Transcriptome analysis revealed that a quorum sensing system regulates the transfer of the pAt megaplasmid in Agrobacterium tumefaciens. Mhedbi-Hajri Nadia, Yahiaoui Noura, Mondy Samuel, Hue Nathalie, Pelissier Cyril, Faure Denis, Dessaux Y.. 2016. BMC Genomics, 17 (661), 14 p.

VSEARCH: a versatile open source tool for metagenomics. Rognes Torbjørn, Flouri Tomás, Nichols Ben, Quince Christopher, Mahe Frédéric. 2016. PeerJ, 4 (e2584), 22 p.

Whole-genome sequences of Xanthomonas euvesicatoria strains clarify taxonomy and reveal a stepwise erosion of type 3 effectors. Barak Jeri D., Vancheva Taca, Lefeuvre Pierre, Jones Jeffrey B., Timilsina Sujan, Minsavage Gerald V., Vallad Gary E., Koebnik Ralf. 2016. Frontiers in Plant Science, 7 (1805), 12 p.

A gene-based map of the Nod factor-independent Aeschynomene evenia sheds new light on the evolution of nodulation and legume genomes. Chaintreuil Clémence, Rivallan Ronan, Bertioli David J., Klopp Christophe, Gouzy Jérôme, Courtois Brigitte, Leleux Philippe, Martin Guillaume, Rami Jean-François, Gully Djamel, Parrinello Hugues, Severac Dany, Patrel Delphine, Fardoux Joël, Ribière William, Boursot Marc, Cartieaux Fabienne, Czernic Pierre, Ratet Pascal, Mournet Pierre, Giraud Eric, Arrighi Jean-François. 2016. DNA Research, 23 (4) : 365-376.

A physical map of important QTLs, functional markers and genes available for sesame breeding programs. Dossa Komivi. 2016. Physiology and Molecular Biology of Plants, 22 : 613-619.

The strange lifestyle of multipartite viruses. Sicard Anne, Michalakis Yannis, Gutiérrez Serafin, Blanc Stéphane. 2016. PLoS Pathogens, 12 (11):e1005819, 19 p.

Cassiicolin genes among Corynespora cassiicola isolates from Rubber plantations in Malaysia. Shuib Siti Shuhada, Déon Marine, Mahyuddin Murnita Mohamad, Izhar Azimah, Fumanal Boris, Sunderasan E., Pujade-Renaud Valérie. 2015. Journal of Rubber Research, 18 (2) : 109-126.

Characterization of a candidate gene for drought tolerance in Coffea: the CcDREB1D gene, in contrasting genotypes of Coffea canephora and related species. Costa Alves Gabriel. 2015. Montpellier : Montpellier SupAgro, 190 p. Thèse de doctorat : Biologie intégrative : Montpellier SupAgro Centre international d'études supérieures en sciences agronomiques

Clade- and species-specific features of genome evolution in the Saccharomycetaceae. Wolfe Kenneth H., Armisén David, Proux-Wera Estelle, ÓhÉigeartaigh Seán S., Azam Haleema, Gordon Jonathan, Byrne Kevin P.. 2015. FEMS Yeast Research, 15 (5), 12 p.

Combined sanger and ngs sequence analysis of the myostatin gene (mstn) in the Camelus dromedarius species. Muzzachi S., Burger P., Fitak Robert Rodgers, Oulmouden A., Cherifi Y., Yahyaoui H., Zayed M.A., Lacalandra G.M., Faye Bernard, Ciani Elena. 2015. Veterinariâ, 42 (2), n.spéc. Silk road camel: The camelids, main stake for sustainable development : 353-355. 4th Conference of the International Society of Camelid Research and Development/ISOCARD 2015. 4, Almaty, Kazakhstan, 8 Juin 2015/12 Juin 2015.

Comparative genomics of a cannabis pathogen reveals insight into the evolution of pathogenicity in Xanthomonas. Jacobs Jonathan M., Pesce Céline, Lefeuvre Pierre, Koebnik Ralf. 2015. Frontiers in Plant Science, 6 (431), 13 p.

Draft genome sequence of Xanthomonas sacchari strain LMG 476. Pieretti Isabelle, Bolot Stéphanie, Carrère Sébastien, Barbe Valérie, Cociancich Stéphane, Rott Philippe, Royer Monique. 2015. Genome Announcements, 3 (2):e00146, 2 p.

Draft genome sequence of an alphaproteobacterium associated with the Mediterranean sponge Oscarella lobularis. Jourda Cyril, Santini Sébastien, Rocher Caroline, Le Bivic André, Claverie Jean-Michel. 2015. Genome Announcements, 3 (5):e00977-15, 2 p.

Draft genome sequences of two Xanthomonas euvesicatoria strains from the Balkan Peninsula. Vancheva Taca, Lefeuvre Pierre, Bogatzevska Nevena, Moncheva Penka, Koebnik Ralf. 2015. Genome Announcements, 3 (1):e01528, 2 p.

Draft genome sequences of two Xanthomonas vesicatoria strains from the Balkan peninsula. Vancheva Taca, Bogatzevska Nevena, Moncheva Penka, Lefeuvre Pierre, Koebnik Ralf. 2015. Genome Announcements, 3 (1):e01558-14, 2 p.

Evidence of intense chromosomal shuffling during conifer evolution. de Miguel Marina, Bartholomé Jérôme, Ehrenmann François, Murat Florent, Moriguchi Yoshinari, Uchiyama Kentaro, Ueno Saneyoshi, Tsumura Yoshihiko, Lagraulet Hélène, de Maria Nuria, Cabezas José-Antonio, Cervera María-Teresa, Gion Jean-Marc, Salse Jérôme, Plomion Christophe. 2015. Genome Biology and Evolution, 7 (1) : 2799-2809.

Full genome sequence analysis of two isolates reveals a novel Xanthomonas species close to the sugarcane pathogen Xanthomonas albilineans. Pieretti Isabelle, Cociancich Stéphane, Bolot Stéphanie, Carrère Sébastien, Morisset Alexandre, Rott Philippe, Royer Monique. 2015. Genes, 6 (3) : 714-733.

Genetic diversity of human rhinoviruses in Cambodia during a three-year period reveals novel genetic types. Naughtin Monica, Rith Sareth, Sentilhes Anne-Charlotte, Vong Sirenda, Joffret Marie-Line, Cornillot Emmanuel, Deubel Vincent, Delpeyroux Francis, Frutos Roger, Buchy Philippe. 2015. Infection, Genetics and Evolution, 35 : 42-49.

Genome and phylogenetic analyses of Trypanosoma evansi reveal extensive similarity to T. brucei and multiple independent origins for dyskinetoplasty. Carnes Jason, Anupama Atashi, Balmer Olivier, Jackson Andrew, Lewis Michael, Brown Rob, Cestari Igor, Desquesnes Marc, Gendrin Claire, Hertz-Fowler Christiane, Imamura Hideo, Ivens Alasdair, Koreny Ludek, Lai De-Hua, MacLeod Annette, McDermott Suzanne M., Merritt Chris, Monnerat Severine, Moon Wonjong, Myler Peter, Phan Isabelle, Ramasamy Gowthaman, Sivam Dhileep, Lun Zhao-Rong, Lukes Julius, Stuart Ken, Schnaufer Achim. 2015. PLoS Neglected Tropical Diseases, 9 (1):e3404, 21 p.

Genome-wide analysis of LTR-retrotransposons in oil palm. Beulé Thierry, Agbessi Mawussé, Dussert Stéphane, Jaligot Estelle, Guyot Romain. 2015. BMC Genomics, 16 (795), 14 p.

High-Quality Draft Genome Sequence of the Xanthomonas translucens pv. cerealis Pathotype Strain CFBP 2541. Pesce Céline, Bolot Stéphanie, Cunnac Sébastien, Portier Perrine, Fischer-Le-Caux Marion, Jacques Marie Agnès, Gagnevin Lionel, Arlat Mathieu, Noel Laurent D., Carrère Sébastien, Bragard Claude, Koebnik Ralf. 2015. Genome Announcements, 3 (1):e0157414, 2 p.

High-resolution genetic maps of Eucalyptus improve Eucalyptus grandis genome assembly. Bartholomé Jérôme, Mandrou Eric, Mabiala André, Jenkins Jerry, Nabihoudine Ibouniyamine, Klopp Christophe, Schmutz Jeremy, Plomion Christophe, Gion Jean-Marc. 2015. New Phytologist, 206 (4), n.spéc. Featured papers on 'Eucalyptus genome' : 1283-1296.

Identification and development of new polymorphic microsatellite markers using genome assembly for Ganoderma boninense, causal agent of oil palm basal stem rot disease. Merciere Maxime, Laybats Anthony, Carasco-Lacombe Catherine, Tan Joon Sheong, Klopp Christophe, Durand-Gasselin Tristan, Alwee Sharifah Shahrul Rabiah Syed, Camus-Kulandaivelu Létizia, Breton Frédéric. 2015. Mycological Progress, 14 (11):103, 11 p.

Le pouvoir pathogène chez Ralstonia solanacearum phylotype II : génomique intégrative et paysages transcriptomiques en relation avec l'adaptation à l'hôte. Ailloud Florent. 2015. Saint-Denis : Université de la Réunion, 222 p. Thèse de doctorat : Microbiologie. Phytopathologie : Université de la Réunion

Mitochondrial genome sequence of the glass sponge Oopsacas minuta. Jourda Cyril, Santini Sébastien, Rocher Caroline, Le Bivic André, Claverie Jean-Michel. 2015. Genome Announcements, 3 (4):e00823-15, 2 p.

Molecular characterization and classification of Trypanosoma spp. Venezuelan isolates based on microsatellite markers and kinetoplast maxicircle genes. Sanchez E., Perrone Trina, Recchimuzzi G., Cardozo I., Biteau Nicolas, Aso Pedro Maria, Mijares Alfrédo, Baltz Théo, Berthier David, Balzano-Nogueira L., Gonzatti Marisa. 2015. Parasites and Vectors, 8 (536), 11 p.

Multilocus sequence analysis of xanthomonads causing bacterial spot of tomato and pepper plants reveals strains generated by recombination among species and recent global spread of Xanthomonas gardneri. Timilsina Sujan, Jibrin Mustafa O., Potnis Neha, Minsavage Gerald V., Kebede Misrak, Schwartz Allison, Bart Rebecca, Staskawicz Brian, Boyer Claudine, Vallad Gary E., Pruvost Olivier, Jones Jeffrey R., Goss Erica. 2015. Applied and Environmental Microbiology, 81 (4) : 1520-1529.

New multilocus variable-number tandem-repeat analysis tool for surveillance and local epidemiology of bacterial leaf blight and bacterial leaf streak of rice caused by Xanthomonas oryzae. Poulin Lucie, Grygiel Pierre, Magne Maxime, Gagnevin Lionel, Rodríguez-R Luis Miguel, Forero Serna Natalia, Zhao Shuai, El Rafil M., Dao S., Tekete C., Wonni Issa, Kolta O., Pruvost Olivier, Verdier Valérie, Vernière Christian, Koebnik Ralf. 2015. Applied and Environmental Microbiology, 81 (2) : 688-698.

Nuclear species-diagnostic SNP markers mined from 454 amplicon sequencing reveal admixture genomic structure of modern Citrus varieties. Curk Franck, Ancillo Gema, Ollitrault Frédérique, Perrier Xavier, Jacquemoud-Collet Jean-Pierre, Garcia-Lor Andrés, Navarro Luis, Ollitrault Patrick. 2015. PloS One, 10 (5):e0125628, 25 p.

Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping. Rebolledo Maria Camila, Dingkuhn Michaël, Courtois Brigitte, Gibon Yves, Clément-Vidal Anne, Cruz Daniel F., Duitama Jorge, Lorieux Mathias, Luquet Delphine. 2015. Journal of Experimental Botany, 66 (18), n.spéc. Phenotyping in Plants : 5555-5566.

Plant virus metagenomics: Advances in virus discovery. Roossinck Marilyn J., Martin Darren Patrick, Roumagnac Philippe. 2015. Phytopathology, 105 (6) : 716-727.

QueTAL: A suite of tools to classify and compare TAL effectors functionally and phylogenetically. Pérez-Quintero Alvaro L., Lamy Léo, Gordon Jonathan, Escalon Aline, Cunnac Sébastien, Szurek Boris, Gagnevin Lionel. 2015. Frontiers in Plant Science, 6 (545), 16 p.

Tomato chlorotic mottle Guyane virus: A novel tomato-infecting bipartite begomovirus from French Guiana. Lett Jean-Michel, De Bruyn Alexandre, Hoareau Murielle, Ouattara Alassane, Claverie Sohini, Dalmon Anne, Laplace Damien, Lefeuvre Pierre, Hostachy Bruno. 2015. Archives of Virology, 160 (11) : 2887-2890.

The chloroplast genome of the hexaploid Spartina maritima (Poaceae, Chloridoideae): Comparative analyses and molecular dating. Rousseau-Gueutin Mathieu, Bellot Sidonie, Martin Guillaume, Boutte Julien, Chelaifa Houda, Lima Oscar, Michon-Coudouel Sophie, Naquin Delphine, Salmon Armel, Ainouche K., Ainouche Malika Lily. 2015. Molecular Phylogenetics and Evolution, 93 : 5-16.

The genomes of many yam species contain transcriptionally active endogenous geminiviral sequences that may be functionally expressed. Filloux Denis, Murrell Sasha, Koohapitagtam M., Golden Michael, Julian Charlotte, Galzi Serge, Uzest Marilyne, Rodier-Goud Marguerite, D'Hont Angélique, Vernerey Marie-Stéphanie, Wilkin P., Peterschmitt Michel, Winter Stephan, Murrell Ben, Martin Darren Patrick, Roumagnac Philippe. 2015. Virus Evolution, 1 (1), 17 p.

A large-scale genomic approach affords unprecedented resolution for the molecular epidemiology and evolutionary history of contagious caprine pleuropneumonia. Dupuy Virginie, Verdier Axel, Thiaucourt François, Manso-Silvan Lucia. 2015. Veterinary Research, 46 (74), 11 p.

Appearances can be deceptive: Revealing a hidden viral infection with deep sequencing in a plant quarantine Context. Candresse Thierry, Filloux Denis, Muhire Brejnev, Julian Charlotte, Galzi Serge, Fort Guillaume, Bernardo Pauline, Daugrois Jean-Heinrich, Fernandez Emmanuel, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2014. PloS One, 9 (7):e102945, 13 p.

Building the sugarcane genome for biotechnology and identifying evolutionary trends. de Setta Nathalia, Monteiro-Vitorello Cláudia, Metcalfe Cushla Jane, Cruz Guilherme Marcelo Queiroga, Del Bem Luiz Eduardo, Vicentini Renato, Tebaldi Silveira Nogueira Fábio, Alvares Campos Roberta, Lima Nunes Sideny, Gasperazzo Turrini Paula Crisina, Prata Vieira Andreia, Ochoa Cruz Edgar Andrés, Silveira Corrêa Tatiana Caroline, Takeshi Hotta Carlos, de Mello Varani Alessandro, Vautrin Sonia, Silva da Trindade Adilson, de Mendonça Vilela Marianne, Gimiliani Lembke Carolina, Mieko Sato Paloma, Fandino de Andrade Rodrigo, Yutaka Nishiyama Milton, Cardoso-Silva Claudio Benicio, Castanho Scortecci Katia, Garcia Antonio Augusto Franco, Sampaio Carneiro Monalisa, Kim Changsoo, Paterson Andrew H., Berges Hélène, D'Hont Angélique, Pereira de Souza Anete, Mendes Souza Glaucia, Vincentz Michel, Kitajima João Paulo, Van Sluys Marie-Anne. 2014. BMC Genomics, 15 (540), 18 p.

Caractérisation des différences de structures chromosomiques dans l'espèce Musa acuminata par re-séquençage ; le cas de l'accession Pahang. Martin Guillaume. 2014. Montpellier : Montpellier SupAgro, 299 p. Thèse de doctorat : Systèmes intégrés en biologie, agronomie, géosciences, hydrosciences, environnement (SIBAGHE). Biologie intégrative des plantes : Montpellier SupAgro Centre international d'études supérieures en sciences agronomiques

Complete genome sequence of a field strain of peste des petits ruminants virus Iisolated during 2010-2014 epidemics in Senegal. Salami Habib, Croville Guillaume, Kwiatek Olivier, Mariette Jérôme, Klopp Christophe, Valière Sophie, Guerin Jean-Luc, Lo Moustapha, Thiongane Yaya, Albina Emmanuel, Libeau Geneviève. 2014. Genome Announcements, 2 (5):e00772, 2 p.

Complete genome sequences of lineage III peste des petits ruminants viruses from the Middle East and East Africa. Muniraju Murali, Munir Muhammad, Banyard Ashley C., Ayebazibwe Chrisostom, Wensman Jonas, Zohari Siamak, Berg Mikael, Parthiban AravindhBabu R., Mahapatra Mana, Libeau Geneviève, Batten Carrie, Parida Satya. 2014. Genome Announcements, 2 (5):e01023, 2 p.

De novo transcriptome analysis of Hevea brasiliensis# tissues by RNA-seq and screening for molecular markers. Rippel Salgado Leonardo, Martins Koop Daniela, Guariz Pinheiro Daniel, Rivallan Ronan, Le Guen Vincent, Nicolás Marisa Fabiana, De Almeida Luiz Gonzaga Paula, Ribeiro Rocha Viviani, Magalhaes Milena, Gerber Alexandra Lehmkuhl, Figueira Antonio, De Mattos Cascardo Julio Cézar, Ribeiro de Vasconcelos Ana Tereza, Araújo Silva Wilson, Coutinho Luiz Lehmann, Garcia Dominique. 2014. BMC Genomics, 15 (236), 15 p.

Development and characterization of a new set of 164 polymorphic EST-SSR markers for diversity and breeding studies in rubber tree (Hevea brasiliensis Müll. Arg.). Cubry Philippe, Pujade-Renaud Valérie, Garcia Dominique, Espeout Sandra, Le Guen Vincent, Granet Françoise, Seguin Marc. 2014. Plant Breeding, 133 (3) : 419-426.

Draft genome sequence of Xanthomonas axonopodis pv. allii strain CFBP 6369. Gagnevin Lionel, Bolot Stéphanie, Gordon Jonathan, Pruvost Olivier, Vernière Christian, Robène Isabelle, Arlat Mathieu, Noel Laurent D., Carrère Sébastien, Jacques Marie Agnès, Koebnik Ralf. 2014. Genome Announcements, 2 (4):e00727, 2 p.

Draft genome sequence of the flagellated Xanthomonas fuscans subsp. fuscans strain CFBP 4884. Indiana Arnaud, Briand Martial, Arlat Mathieu, Gagnevin Lionel, Koebnik Ralf, Noel Laurent D., Portier Perrine, Darrasse Armelle, Jacques Marie Agnès. 2014. Genome Announcements, 2 (5):e00966, 2 p.

Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution. Geering Andrew D., Maumus Florian, Copetti Michele, Choisne Nathalie, Zwickl Derrick J., Zytnicki Matthias, Mc Taggart Alistair R., Scalabrin Simone, Vezzulli Silvia, Wing Rod A., Quesneville Hadi, Teycheney Pierre-Yves. 2014. Nature Communications, 5 (2569), 11 p.

Etude de la synthèse des exopolysaccharides sécrétés par les mycoplasmes du groupe "mycoides" et, notamment, par Mycoplasma mycoides subsp. mycoides, agent de la péripneumonie contagieuse bovine. Bertin Clothilde. 2014. Villeurbanne : UCLB, 153 p. Thèse de doctorat : Microbiologie : Université Claude Bernard Lyon 1

Impact of natural selection on lignin and cellulose candidate genes in a natural population of Eucalyptus urophylla. Camus-Kulandaivelu Létizia, Favreau Bénédicte, Ueno Saneyoshi, Przybyla Jonathan, Bouvet Jean-Marc. 2014. Open Journal of Ecology, 4 (17) : 1128-1150.

Impact of recurrent gene duplication on adaptation of plant genomes. Fischer Iris, Dainat Jacques, Ranwez Vincent, Glemin Sylvain, Dufayard Jean-François, Chantret Nathalie. 2014. BMC Plant Biology, 14 (151), 15 p.

Moko disease-causing strains of #Ralstonia solanacearum" from Brazil extend known diversity in paraphyletic phylotype II. Albuquerque Greecy M.R., Santos Liliana A., Felix Kátia C.S., Rollemberg Christtianno L., Silva Adriano M.F., Souza Elineide B., Cellier Gilles, Prior Philippe, Mariano Rosa L.R.. 2014. Phytopathology, 104 (11) : 1175-1182.

Molecular evolution of peste des petits ruminants virus. Muniraju Murali, Munir Muhammad, Parthiban AravindhBabu R., Banyard Ashley C., Bao Jingyue, Wang Zhiliang, Ayebazibwe Chrisostom, Ayelet Gelagay, El Harrak Mehdi, Mahapatra Mana, Libeau Geneviève, Batten Carrie, Parida Satya. 2014. Emerging Infectious Diseases, 20 (12) : 2023-2033.

Phylogenetic reconstruction methods: An overview. De Bruyn Alexandre, Martin Darren Patrick, Lefeuvre Pierre. 2014. In : Molecular Plant Taxonomy. by Pascale Besse (ed.). New York : Humana Press, 257-277. (Mehtods in Molecular Biology, 1115) ISBN 978-1-62703-766-2

Phylogenetic relationships and population structure of Ralstonia solanacearum isolated from diverse origins in Taiwan. Lin C.H., Tsai K.C., Prior Philippe, Wang Jaw-Fen. 2014. Plant Pathology, 63 (6) : 1395-1403.

Positional cloning of the rice male sterility gene ms-IR36, widely used in the inter-crossing phase of recurrent selection schemes. Frouin Julien, Filloux Denis, Taillebois James E., Grenier Cécile, Montes Fabienne, De Lamotte Frédéric, Verdeil Jean-Luc, Courtois Brigitte, Ahmadi Nourollah. 2014. Molecular Breeding, 33 (3) : 555-567.

Sequence and expression analyses of ethylene response factors highly expressed in latex cells from Hevea brasiliensis. Piyatrakul Piyanuch, Yang Meng, Putranto Riza Arief, Pirrello Julien, Dessailly Florence, Hu Songnian, Summo Marilyne, Theeravatanasuk Kannikar, Leclercq Julie, Kuswanhadi, Montoro Pascal. 2014. PloS One, 9 (6):e99367, 20 p.

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Wu Guohong Albert, Prochnik Simon, Jenkins Jerry, Salse Jérôme, Hellsten Uffe, Murat Florent, Perrier Xavier, Ruiz Manuel, Scalabrin Simone, Terol Javier F., Takita Marco Aurélio, Labadie Karine, Poulain Julie, Couloux Arnaud, Jabbari Kamel, Cattonaro Frederica, Del Fabbro Cristian, Pinosio Sara, Zuccolo Andrea, Chapman Jarrod, Grimwood Jane, Tadeo Francisco, Estornell Leandro H., Muñoz-Sanz Juan V., Ibáñez Victoria, Herrero-Ortega Amparo, Aleza Pablo, Pérez-Pérez Júlian, Ramón Daniel, Brunel Dominique, Luro François, Chen Chunxian, Farmerie William G., Desany Brian, Kodira Chinnappa, Mohiuddin Mohammed, Harkins Tim, Fredrikson Karin, Burns Paul, Lomsadze Alexandre, Borodovsky Mark, Reforgiato Giuseppe, Freitas-Astúa Juliana, Quetier Francis, Navarro Luis, Roose Mikeal L., Wincker Patrick, Schmutz Jeremy, Morgante Michele, Machado Marcos Antonio, Talon Manuel, Ollitrault Patrick, Gmitter Frederick G. Jr., Rokhsar Daniel S.. 2014. Nature Biotechnology, 32 : 656-662.

Ségrégation des chromosomes dans un croisement interspécifique de bananiers (AAAB x AA) et redistribution des séquences de Banana streak virus intégrées au génome B. Noumbissie Touko Guy Blaise. 2014. Montpellier : Montpellier SupAgro, 180 p. Thèse de doctorat : Systèmes intégrés en biologie, agronomie, géosciences, hydrosciences et environnement (SIBAGHE). Biologie intégrative des plantes (BIP) : Montpellier SupAgro Centre international d'études supérieures en sciences agronomiques

The common evolutionary history of badnaviruses and banana. Iskra Caruana Marie-Line, Duroy Pierre-Olivier, Chabannes Matthieu, Muller Emmanuelle. 2014. Infection, Genetics and Evolution, 21 : 83-89.

The first complete chloroplast genome of the Genistoid legume Lupinus luteus: evidence for a novel major lineage-specific rearrangement and new insights regarding plastome evolution in the legume family. Martin Guillaume, Rousseau-Gueutin Mathieu, Cordonnier Solenn, Lima Oscar, Michon-Coudouel Sophie, Naquin Delphine, de Carvalho Julie Ferreira, Ainouche Malika Lily, Salmon Armel, Ainouche Abdelkader. 2014. Annals of Botany, 113 (7) : 1197-1210.

The genome of African yam (Dioscorea cayenensis-rotundata complex) hosts endogenous sequences from four distinct badnavirus species. Umber Marie, Filloux Denis, Muller Emmanuelle, Laboureau Nathalie, Galzi Serge, Roumagnac Philippe, Iskra Caruana Marie-Line, Pavis Claudie, Teycheney Pierre-Yves, Seal Susan. 2014. Molecular Plant Pathology, 15 (8) : 790-801.

The genomic substrate for adaptive radiation in African cichlid fish. Brawand David, Wagner Catherine E., Li Yang I., Malinsky Milan, Keller Irène, Fan Shaohua, Simakov Oleg, Ng Alvin Y., Lim Zhi Wei, Bezault Etienne, Turner-Maier Jason, Johnson Jeremy, Alcazar Rosa, Noh Hyun Ji, Russell Pamela, Aken Bronwen, Alföldi Jessica, Amemiya Chris, Azzouzi Naoual, Baroiller Jean-François, Barloy-Hubler Frédérique, Berlin Aaron, Bloomquist Ryan, Carleton Karen L., Conte Matthew A., D'Cotta Helena, Eshel Orly, Gaffney Leslie, Galibert Francis, Gante Hugo F., Gnerre Sante, Greuter Lucie, Guyon Richard, Haddad Nathalie S., Haerty Wilfried, Harris Rayna M., Hofmann Hans A., Hourlier Thibaut, Hulata Gideon, Jaffe David B., Lara Marcia, Lee Alison P., MacCallum Iain, Mwaiko Salome, Nikaido Masato, Nishihara Hidenori, Ozouf-Costaz Catherine, Penman David J., Przybylski Darius, Rakotomanga Michelle, Renn Suzy C. P., Ribeiro Filipe J., Ron Micha, Salzburger Walter, Sanchez-Pulido Luis, Santos Emilia, Searle Steve, Sharpe Ted, Swofford Ross, Tan Frederick J., Williams Louise, Young Sarah, Yin Shuangye, Okada Norihiro, Kocher Thomas D., Miska Eric A., Lander Eric S., Venkatesh Byrappa, Fernald Russell D., Meyer Axel, Ponting Chris P., Streelman J. Todd, Lindblad-Toh Kerstin, Seehausen Ole, Di Palma Frederica. 2014. Nature, 513 (7518) : 375-381.

The pathogenesis-related protein PR-4b from Theobroma cacao presents RNase activity, Ca2+ and Mg2+ dependent-DNase activity and antifungal action on Moniliophthora perniciosa. Menezes Sara Pereira, De Andrade Silva Edson Mario, Lima Eline Matos, Oliveira de Sousa Aurizângela, Andrade Bruno Silva, Santos Lima Livia, Gramacho Karina Peres, Da Silva Gesteira Abelmon, Priminho Pirovani Carlos, Micheli Fabienne. 2014. BMC Plant Biology, 14 (161), 21 p.

The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Seal Susan, Turaki Aliyu, Muller Emmanuelle, Lava Kumar P., Kenyon Lawrence, Filloux Denis, Galzi Serge, Lopez-Montes Antonio, Iskra Caruana Marie-Line. 2014. Virus Research, 186 : 144-145. International Plant Virus Epidemiology Symposium. 12, Arusha, Tanzanie, 28 Janvier 2013/1 Février 2013.

The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants. Porcel Betina M., Denoeud France, Opperdoes Fred, Noël Benjamin, Madoui Mohammed-Amine, Hammarton Tansy, Field Mark, Da Silva Corinne, Couloux Arnaud, Poulain Julie, Katinka Michael, Jabbari Kamel, Aury Jean-Marc, Campbell David A., Cintron Roxana, Dickens Nicolas, Docampo Roberto, Sturm Nancy R., Koumandou Lila, Fabre Sandrine, Flegontov Pavel, Lukes Julius, Michaeli Shula, Mottram Jeremy, Szoor Balazs, Zilberstein Dan, Bringaud Frédéric, Wincker Patrick, Dollet Michel. 2014. PLoS Genetics, 10 (2):e1004007, 24 p.

Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Puig Jérôme, Meynard Donaldo, Khong Ngan Giang, Pauluzzi Germain, Guiderdoni Emmanuel, Gantet Pascal. 2013. Gene Expression Patterns, 13 (5-6) : 160-170.

BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution. Dereeper Alexis, Guyot Romain, Tranchant-Dubreuil Christine, Anthony François, Argout Xavier, De Bellis Fabien, Combes Marie-Christine, Gavory Fréderick, De Kochko Alexandre, Kudrna Dave, Leroy Thierry, Poulain Julie, Rondeau Myriam, Song Xiang, Wing Rod A., Lashermes Philippe. 2013. Plant Molecular Biology, 83 (3) : 177-189.

Citrus (Rustaceae) SNP markers based on competitive allele-specific PCR; transferability across the aurantioideaz subfamily. Garcia-Lor Andrés, Ancillo Gema, Navarro Luis, Ollitrault Patrick. 2013. Applications in Plant Sciences, 1 (4), 6 p.

Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid Coffea arabica grown at contrasted temperatures. Combes Marie-Christine, Dereeper Alexis, Severac Dany, Bertrand Benoît, Lashermes Philippe. 2013. New Phytologist, 200 (1) : 251-260.

Cytological and molecular characterization of three gametoclones of Citrus clementina. Germanà Maria Antonietta, Aleza Pablo, Carrera Esther, Chen Chunxian, Chiancone Benedetta, Costantino Gilles, Dambier Dominique, Deng Xiuxin, Federici Claire T., Froelicher Yann, Guo Wenwu, Ibáñez Victoria, Juarez José, Kwok Kevin, Luro François, Machado Marcos Antonio, Naranjo Miguel Angel, Navarro Luis, Ollitrault Patrick, Rios Gabino, Roose Mikeal L., Talon Manuel, Xu Qiang, Gmitter Frederick G. Jr.. 2013. BMC Plant Biology, 13 (1), 8 p.

Diversité des symbioses ectomycorhiziennes dans les écosystèmes forestiers naturels sur sols ultramafiques de Nouvelle-Caledonie. Prin Yves, Ducousso Marc, Tassin Jacques, Béna Gilles, Jourand Philippe, Dumontet Vincent, Moulin Lionel, Contesto Céline, Ambrosi J.P., Chaintreuil Clémence, Dreyfus Bernard, Lebrun Michel. 2013. In : Des champignons symbiotiques contre la désertification : écosystèmes méditerranéens, tropicaux et insulaires. Duponnois Robin (ed.), Hafidi Mohamed (ed.), Ndoye Ibrahima (ed.), Ramanankierana Heriniaina (ed.), Bâ Amadou Moustapha (ed.). Marseille : IRD [Marseille], 444-473. ISBN 978-2-7592-1827-5

Draft genome sequences of Mycoplasma auris, Mycoplasma arginini, and Mycoplasma yeatsii, two species of the ear canal of Caprinae. Dordet-Frisoni Emilie, Baranowski Eric, Barré Aurélien, Blanchard Alain, Breton Marc, Couture Carole, Dupuy Virginie, Gaurivaud Patrice, Jacob Daniel, Lemaitre Claire, Manso-Silvan Lucia, Nikolski Macha, Nouvel Laurent Xavier, Poumarat François, Sirand-Pugnet Pascal, Thebault Patricia, Theil Sébastien, Thiaucourt François, Citti Christine, Tardy Florence. 2013. Genome Announcements, 1 (3) : 00280-13.

Dynamic of H5N1 virus in Cambodia and emergence of a novel endemic sub-clade. Sorn San, Sok Touch, Ly Sovann, Rith Sareth, Nguyen Tung, Viari Alain, Gavotte Laurent, Holl Davun, Seng Heng, Asgari Nima, Richner Beat, Laurent Denis, Chea Nora, Duong Veasna, Toyoda Tetsuya, Yasudai Chadwick Y., Kitsutani Paul, Zhoui Paul, Bing Sun, Deubel Vincent, Donis Ruben, Frutos Roger, Buchy Philippe. 2013. Infection, Genetics and Evolution, 15, spec. : 87-94. International Giardia and Cryptosporidium Conference. 4, Wellington, Afrique du Sud, 30 Janvier 2012/3 Février 2012.

Endogenous pararetroviruses - a reservoir of virus infection in plants. Chabannes Matthieu, Iskra Caruana Marie-Line. 2013. Current Opinion in Virology, 3 (6) : 615-620.

First report of sequence type 1, pathotype A Xanthomonas citri pv. citri from lime and lemon fruit originating from Bangladesh. Vernière Christian, Vital Karine, Boyer Claudine, Pruvost Olivier, Carter B.A.. 2013. Plant Disease, 97 (6) : 836.

Gene copy number is differentially regulated in a multipartite virus. Sicard Anne, Yvon Michel, Timchenko Tatiana, Gronenborn Bruno, Michalakis Yannis, Gutierrez Serafin, Blanc Stéphane. 2013. Nature Communications, 4:2248, 8 p.

Genetic diversity and lineage dynamic of dengue virus serotype 1 (DENV-1) in Cambodia. Duong Veasna, Simmons Cameron, Gavotte Laurent, Viari Alain, Ong Sivuth, Chantha Ngan, Lennon Niall J., Birren Bruce W., Vong Sirenda, Farrar Jeremy J., Henn Matthew R., Deubel Vincent, Frutos Roger, Buchy Philippe. 2013. Infection, Genetics and Evolution, 15, spec. : 59-68. International Giardia and Cryptosporidium Conference. 4, Wellington, Afrique du Sud, 30 Janvier 2012/3 Février 2012.

Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides. Royer Monique, Koebnik Ralf, Marguerettaz Mélanie, Barbe Valérie, Robin Guillaume P., Brin Christelle, Carrère Sébastien, Gomez Camila, Hügelland Manuela, Völler Ginka H., Noëll Julie, Pieretti Isabelle, Rausch Saskia, Verdier Valérie, Poussier Stéphane, Rott Philippe, Süssmuth Roderich, Cociancich Stéphane. 2013. BMC Genomics, 14 (658), 19 p.

Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads. Darrasse Armelle, Carrère Sébastien, Barbe Valérie, Boureau Tristan, Arrieta-Ortiz Mario L., Bonneau Sophie, Briand Martial, Brin Christelle, Cociancich Stéphane, Durand Karine, Fouteau Stéphanie, Gagnevin Lionel, Guérin Fabien, Guy Endrick, Indiana Arnaud, Koebnik Ralf, Lauber Emmanuelle, Munoz Alejandra, Noel Laurent D., Pieretti Isabelle, Poussier Stéphane, Pruvost Olivier, Robène-Soustrade Isabelle, Rott Philippe, Royer Monique, Serres-Giardi Laurana, Szurek Boris, Van Sluys Marie-Anne, Verdier Valérie, Vernière Christian, Arlat Mathieu, Manceau Charles, Jacques Marie Agnès. 2013. BMC Genomics, 14 (761), 30 p.

Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. manihotis strain CIO151. Arrieta-Ortiz Mario L., Rodríguez-R Luis Miguel, Pérez-Quintero Alvaro L., Poulin Lucie, Díaz Ana C., Arias Rojas Nathalia, Trujillo Cesar, Restrepo Benavides Mariana, Bart Rebecca, Boch Jen, Boureau Tristan, Darrasse Armelle, David Perrine, Dugé de Bernonville Thomas, Fontanilla Paula, Gagnevin Lionel, Guérin Fabien, Jacques Marie Agnès, Lauber Emmanuelle, Lefeuvre Pierre, Medina Cesar, Medina Edgar, Montenegro Nathaly, Munoz Alejandra, Noel Laurent D., Ortiz Quiñoes Juan F., Osorio Daniela, Pardo Carolina, Patil Prabhu B., Poussier Stéphane, Pruvost Olivier, Robène-Soustrade Isabelle, Ryan Robert P., Tabima Javier, Urrego Morales Osacar G., Vernière Christian, Carrère Sébastien, Verdier Valérie, Szurek Boris, Restrepo Silvia, López Camilo, Koebnik Ralf, Bernal Adriana Jimena. 2013. PloS One, 8 (11):e79704, 18 p.

High prevalence of hepatitis E in humans and pigs and evidence of genotype-3 virus in swine, Madagascar. Temmam Sarah, Besnard Lydia, Andriamandimby Soa Fy, Foray Coralie, Rasamoelina-Andriamanivo Harentsoaniaina, Héraud Jean Michel, Cardinale Eric, Dellagi Koussay, Pavio Nicole, Pascalis Hervé, Porphyre Vincent. 2013. American Journal of Tropical Medicine and Hygiene, 88 (2) : 329-338.

High-Quality Draft Genome Sequences of Two Xanthomonas citri pv. malvacearum Strains. Cunnac Sébastien, Bolot Stéphanie, Forero Serna Natalia, Ortiz Erika, Szurek Boris, Noel Laurent D., Arlat Mathieu, Jacques Marie Agnès, Gagnevin Lionel, Carrère Sébastien, Nicole Michel, Koebnik Ralf. 2013. Genome Announcements, 1 (4):e00674, 2 p.

Host associations, biogeography, and phylogenetics of avian malaria in southern African waterfowl. Cumming Graeme S., Shepard Eric, Okanga Sharon, Caron Alexandre, Ndlovu Mduduzi, Peters Jeffrey L.. 2013. Parasitology, 140 : 193-201.

Identification of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing. Duan Cuifang, Argout Xavier, Gebelin Virginie, Summo Marilyne, Dufayard Jean-François, Leclercq Julie, Kuswanhadi, Piyatrakul Piyanuch, Pirrello Julien, Rio Maryannick, Champion Anthony, Montoro Pascal. 2013. BMC Genomics, 14 (30), 22 p.

Molecular characterization of a new alphasatellite associated with a cassava mosaic geminivirus in Madagascar. Harimalala Mireille Aurélie, De Bruyn Alexandre, Hoareau Murielle, Andrianjaka Alice, Ranomenjanahary Sahondramalala, Reynaud Bernard, Lefeuvre Pierre, Lett Jean-Michel. 2013. Archives of Virology, 158 (8) : 1829-1832.

Métagénomique virale et pathologie Une histoire récente. Bernardo Pauline, Albina Emmanuel, Eloit Marc, Roumagnac Philippe. 2013. MS - Médecine Sciences, 29 (5) : 501-508.

New avian paramyxoviruses type I strains identified in Africa provide new outcomes for phylogeny reconstruction and genotype classification. Servan de Almeida Renata, Hammoumi Saliha, Gil Patricia, Briand François-Xavier, Molia Sophie, Gaidet Nicolas, Cappelle Julien, Chevalier Véronique, Balança Gilles, Traoré Abdallah, Grillet Colette, Fridolin Maminiaina Olivier, Guendouz Samia, Dakouo Martin, Samake Kassim, Bezeid Ould El Mamy, Diarra Abbas, Chaka Hassen, Goutard Flavie, Thompson Peter, Martinez Dominique, Jestin Véronique, Albina Emmanuel. 2013. PloS One, 8 (10):e76413, 16 p.

Organisation et évolution de familles de gènes impliqués dans la maturation du fruit chez le bananier. Jourda Cyril. 2013. Montpellier : UM2, 353 p. Thèse de doctorat : Systèmes intégrés en biologie, agronomie, géosciences, hydrosciences et environnement (SIBAGHE). Biologie intégrative des plantes : Université Montpellier 2

Organización de la diversidad genética de los cítricos. Garcia Lor Andrés. 2013. Valence : Universidad Politecnica de Valencia, 259 p. Tesis doctoral : Universidad Politecnica de Valencia

Phylogénie, structure génétique et diversité de virulence de Ralstonia solanacearum Yabucchi et al. (1995),[Burkhoderiacées], agent du flétrissement bactérien en Côte d'Ivoire. N'Guessan Carine Aya. 2013. Abidjan : UFHB, 248 p. Thèse de doctorat : Phytopathologie : Université de Cocody

Promoter analysis of the WRKY transcription factors CaWRKY1a and CaWRKY1b homoeologous genes in coffee (Coffea arabica). Petitot Anne-Sophie, Barsalobres-Cavallari Carla, Ramiro Daniel, Albuquerque Erika, Etienne Hervé, Fernandez Diana. 2013. Plant Cell Reports, 32 (8) : 1263-1276.

QTL mapping of growth-related traits in a full-sib family of rubber tree (Hevea brasiliensis) evaluated in a sub-tropical climate. Souza Livia Moura, Gazaffi Rodrigo, Mantello Camilia Campos, Silva Carla Cristina, Garcia Dominique, Le Guen Vincent, Cardoso Saulo Emilio Almeida, Garcia Antonio Augusto Franco, Souza Anete Pereira. 2013. PloS One, 8 (4):e61238, 10 p.

Three infectious viral species lying in wait in the banana genome. Chabannes Matthieu, Baurens Franc-Christophe, Duroy Pierre-Olivier, Bocs Stéphanie, Vernerey Marie-Stéphanie, Rodier-Goud Marguerite, Barbe Valérie, Gayral Philippe, Iskra Caruana Marie-Line. 2013. Journal of Virology, 87 (15) : 8624-8637.

The complete chloroplast genome of banana (Musa acuminata, Zingiberales): Insight into plastid monocotyledon evolution. Martin Guillaume, Baurens Franc-Christophe, Cardi Céline, Aury Jean-Marc, D'Hont Angélique. 2013. PloS One, 8 (6):e67350, 10 p.

The effect of the DNA preparation method on the sensitivity of PCR for the detection of Trypanosoma evansi in rodents and implications for epidemiological surveillance efforts. Pruvot Mathieu, Kamyingkird Ketsarin, Desquesnes Marc, Sarataphan Nachai, Jittapalapong Sathaporn. 2013. Veterinary Parasitology, 191 (3-4) : 203-208.

A nuclear phylogenetic analysis: SNPs, indels and SSRs deliver new insights into the relationships in the "true citrus fruit trees" group (Citrinae, Rutaceae) and the origin of cultivated species. Garcia-Lor Andrés, Curk Franck, Snoussi Trifa Hager, Morillon Raphaël, Ancillo Gema, Luro François, Navarro Luis, Ollitrault Patrick. 2013. Annals of Botany, 111 (1) : 1-19.

The small RNA profile in latex from Hevea brasiliensis trees is affected by tapping panel dryness. Gebelin Virginie, Leclercq Julie, Kuswanhadi, Argout Xavier, Chaidamsari Tetty, Hu Songnian, Tang Chaorong, Sarah Gautier, Yang Meng, Montoro Pascal. 2013. Tree Physiology, 33 (10) : 1084-1098.

Always Look on Both Sides: Phylogenetic Information Conveyed by Simple Sequence Repeat Allele Sequences. Barthe Stéphanie, Gugerli Felix, Barkley Noelle A., Maggia Laurent, Cardi Céline, Scotti Ivan. 2012. PloS One, 7 (7):e40699, 9 p.

Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades. Guyot Romain, Lefebvre-Pautigny Florent, Tranchant-Dubreuil Christine, Rigoreau Michel, Hamon Perla, Leroy Thierry, Hamon Serge, Poncet Julie, Crouzillat Dominique, De Kochko Alexandre. 2012. BMC Genomics, 13 (103), 14 p.

Banana genome sequencing [Editorial]. Ganry Jacky. 2012. Fruits, 67 (6) : 397-398.

Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton. Lacape Jean-Marc, Claverie Michel, Vidal Ramon Oliveira, Carazzolle Marcelo Falsarella, Guimarães Pereira Gonçalo Amarante, Ruiz Manuel, Pré Martial, Llewellyn Danny, Al-Ghazi Yves, Jacobs John, Dereeper Alexis, Huguet Stéphanie, Giband Marc, Lanaud Claire. 2012. PloS One, 7 (11):e48855, 16 p.

Development of expressed sequence tag and expressed sequence tag-simple sequence repeat marker resources for Musa acuminata. Passos Marco A.N., De Oliveira Cruz Viviane, Emediato Flavia L., De Camargo Teixeira Cristiane, Souza Jr Manoel T., Matsumoto Takashi, Rennó Azevedo Vânia C., Ferreira Claudia Fortes, Amorim Edson Perito, De Alencar Figueiredo Lucio Flavio, Martins Natalia, Barbosa Cavalcante Maria De Jesus, Baurens Franc-Christophe, Da Silva Jr Orzenil Bonfim, Pappas Junior Georgios, Pignolet Luc, Abadie Catherine, Ciampi Ana, Piffanelli Pietro, Miller Roberto Neil Gerard. 2012. AoB Plants, 2012 (pls030), 20 p.

Discovery and mapping of a new expressed sequence tag-single nucleotide polymorphism and simple sequence repeat panel for large-scale genetic studies and breeding of Theobroma cacao L. Allègre Mathilde, Argout Xavier, Boccara Michel, Fouet Olivier, Roguet Yolande, Bérard Aurélie, Thévenin Jean-Marc, Chauveau Aurélie, Rivallan Ronan, Clément Didier, Courtois Brigitte, Gramacho Karina Peres, Boland-Auge Anne, Tahi Mathias Gnion, Umaharan Pathmanathan, Brunel Dominique, Lanaud Claire. 2012. DNA Research, 19 (1) : 23-35.

Dossier de candidature au diplôme d'habilitation à diriger des recherches. Perin Christophe. 2012. Montpellier : UM2, 61 p. Habilitation à diriger des recherches : Université Montpellier 2

Dynamique des populations microbiennes au cours du traitement post récolte du café et relations interspécifiques entre souches ochratoxinogènes. Durand Noël. 2012. Montpellier : UM2, 240 p. Thèse de doctorat : Sciences des procédés Sciences des aliments. Biotechnologie, microbiologie : Université Montpellier 2

Epidémiologie d'une zoonose, la Leptospirose, dans deux îles de l'Océan Indien, la Réunion et Mayotte : étude comparée du rôle de différentes espèces sauvages et domestiques. Desvars Amélie. 2012. Saint-Denis : Université de la Réunion, 363 p. Thèse de doctorat : Sciences technologies santé. Epidémiologie : Université de la Réunion

Genetic data from avian influenza and avian paramyxoviruses generated by the European network of excellence (EPIZONE) between 2006 and 2011-Review and recommendations for surveillance. Dundon William G., Heidari Alireza, Fusaro Alice, Monne Isabella, Beato Maria Serena, Cattoli Giovanni, Koch Guus, Starick Elke, Brown Ian H., Aldous Elisabeth W., Briand François-Xavier, Le Gall-Reculé Ghislaine, Jestin Véronique, Jorgensen Poul H., Berg Mikael, Zohari Siamak, Metreveli Giorgi, Munir Muhammad, Stahl Karl, Albina Emmanuel, Hammoumi Saliha, Gil Patricia, Servan de Almeida Renata, Smietanka Krzysztof, Domanska-Blicharz Katarzyna, Minta Zenon, Van Borm Steven, Van den Berg Thierry, Moreno Martin Ana, Barbieri Ilaria, Capua Ilaria. 2012. Veterinary Microbiology, 154 (3-4) : 209-221.

Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels. Pieretti Isabelle, Royer Monique, Barbe Valérie, Carrère Sébastien, Koebnik Ralf, Couloux Arnaud, Darrasse Armelle, Gouzy Jérôme, Jacques Marie Agnès, Lauber Emmanuelle, Manceau Charles, Mangenot Sophie, Poussier Stéphane, Segurens Béatrice, Szurek Boris, Verdier Valérie, Arlat Mathieu, Gabriel Dean W., Rott Philippe, Cociancich Stéphane. 2012. BMC Genomics, 13 (658), 23 p.

Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets. Gebelin Virginie, Argout Xavier, Engchuan Worrawat, Pitollat Bertrand, Duan Cuifang, Montoro Pascal, Leclercq Julie. 2012. BMC Plant Biology, 12 (12), 18 p.

Isolamento e caracterização do gene CaLTP EM Coffea spp. Guitton Cotta Michelle. 2012. Lavras : UFLA, 161 p. Mémoire de master : Biotecnologia Vegetal : Universidade Federal de Lavras

Minerals affect the specific diversity of forest soil bacterial communities. Uroz S., Turpault Marie Pierre, Delaruelle Christine, Mareschal Louis, Pierrat Jean-Claude, Frey-Klett Pascale. 2012. Geomicrobiology Journal, 29 (1) : 88-98.

Quels sont les enjeux au cours de l'évolution du bananier qui ont conduit au maintien de séquences virales de Banana streak virus dans son génome ? Duroy Pierre-Olivier. 2012. Montpellier : UM2, 213 p. Thèse de doctorat : Systèmes intégrés en biologie, agronomie, géosciences, hydrosciences et environnement (SIBAGHE). Biologie intégrative des plantes : Université Montpellier 2

SNP mining in C. Clementina BAC end sequences; transferability in the Citrus genus (Rutaceae), phylogenetic inferences and perspectives for genetic mapping. Ollitrault Patrick, Terol Javier F., Garcia-Lor Andrés, Bérard Aurélie, Chauveau Aurélie, Froelicher Yann, Belzile Caroline, Morillon Raphaël, Navarro Luis, Brunel Dominique, Talon Manuel. 2012. BMC Genomics, 13 (13), 19 p.

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. D'Hont Angélique, Denoeud France, Aury Jean-Marc, Baurens Franc-Christophe, Carreel Françoise, Garsmeur Olivier, Noël Benjamin, Bocs Stéphanie, Droc Gaëtan, Rouard Mathieu, Da Silva Corinne, Jabbari Kamel, Cardi Céline, Poulain Julie, Souquet Marlène, Labadie Karine, Jourda Cyril, Lengellé Juliette, Rodier-Goud Marguerite, Alberti Adriana, Bernard Maria, Correa Margot, Ayyampalayam Saravanaraj, Mckain Michael R, Leebens-Mack Jim, Burgess Diane, Freeling Mike, Mbéguié-A-Mbéguié Didier, Chabannes Matthieu, Wicker Thomas, Panaud Olivier, Barbosa Jose, Hribova Eva, Heslop Harrison Pat, Habas Rémy, Rivallan Ronan, François Philippe, Poiron Claire, Kilian Andrzej, Burthia Dheema, Jenny Christophe, Bakry Frédéric, Brown Spencer, Guignon Valentin, Kema Gert H.J., Dita Miguel A., Waalwijk Cees, Joseph Steeve, Diévart Anne, Jaillon Olivier, Leclercq Julie, Argout Xavier, Lyons Eric, Almeida Ana, Jeridi Mouna, Dolezel Jaroslav, Roux Nicolas, Risterucci Ange-Marie, Weissenbach Jean, Ruiz Manuel, Glaszmann Jean-Christophe, Quetier Francis, Yahiaoui Nabila, Wincker Patrick. 2012. Nature, 488 (7410) : 213-217.

A genetic map of pineapple (Ananas comosus (L.) Merr.) including SCAR, CAPS, SSR and EST-SSR markers. Carlier Jorge Dias, Sousa Nelson Horta, Santo Tatiana Espirito, Coppens D'Eeckenbrugge Géo, Leitão José Manuel. 2012. Molecular Breeding, 29 (1) : 245-260.

The internal transcribed spacer of ribosomal RNA genes in plant trypanosomes (Phytomonas spp.) resolves 10 groups. Dollet Michel, Sturm Nancy R., Campbell David A.. 2012. Infection, Genetics and Evolution, 12 (2) : 299-308.

A novel maize-infecting mastrevirus from La Réunion Island. Pande Daniel, Kraberger Simona, Lefeuvre Pierre, Lett Jean-Michel, Shepherd Dionne Natalie, Varsani Arvind, Martin Darren Patrick. 2012. Archives of Virology, 157 (8) : 1617-1621.

A reference genetic map of C. clementina hort. ex Tan.; citrus evolution inferences from comparative mapping. Ollitrault Patrick, Terol Javier F., Chen Chunxian, Federici Claire T., Lotfy Samia, Hippolyte Isabelle, Ollitrault Frédérique, Bérard Aurélie, Chauveau Aurélie, Cuenca José, Costantino Gilles, Kacar A.Yildiz, Mu Lisa, Garcia-Lor Andrés, Froelicher Yann, Aleza Pablo, Boland Anne, Billot Claire, Navarro Luis, Luro François, Roose Mikeal L., Gmitter Frederick G. Jr., Talon Manuel, Brunel Dominique. 2012. BMC Genomics, 13 (593), 20 p.

Complete genome sequence of a dahlia common mosaic virus isolate from New Zealand. Hadfield James, Linderme Daphné, Shepherd Dionne Natalie, Bezuidenhout Marion, Lefeuvre Pierre, Martin Darren Patrick, Varsani Arvind. 2011. Archives of Virology, 156 (12) : 2297-2301.

Endogenous viral sequences in plant genomes. Teycheney Pierre-Yves, Geering Andrew D.. 2011. In : Recent advances in plant virology. Caranta Carole (ed.), Aranda Miguel A. (ed.), Tepfer Mark (ed.), Lopez-Moya Juan José (ed.). Norfolk : Caister Academic Press, 343-362. ISBN 978-1-904455-75-2

High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane. Garsmeur Olivier, Charron Carine, Bocs Stéphanie, Jouffe Vincent, Samain Sylvie, Couloux Arnaud, Droc Gaëtan, Zini Cyrille, Glaszmann Jean-Christophe, Van Sluys Marie-Anne, D'Hont Angélique. 2011. New Phytologist, 189 (2) : 629-642.

Phylogeography and molecular epidemiology of yersinia pestis in Madagascar. Vogler Amy. J., Chan Fabien, Wagner David.M., Roumagnac Philippe, Lee Judy, Nera Roxanne, Eppinger Mark, Ravel Jacques, Rahalison Lila, Rasoamanana Bruno W., Beckstrom-Sternberg Stephen M., Achtman Mark, Chanteau Suzanne, Keim Paul. 2011. PLoS Neglected Tropical Diseases, 5 (9):e1319, 11 p.

Specific primers for PCR amplification of the ITS1 (ribosomal DNA) of Trypanosoma lewisi. Desquesnes Marc, Kamyingkird Ketsarin, Yangtara Sarawut, Milocco Cristina, Ravel Sophie, Ming-Hui Wang, Zhao-Rong Lun, Morand Serge, Jittapalapong Sathaporn. 2011. Infection, Genetics and Evolution, 11 (6) : 1361-1367.

Two new complete genome sequences offer Insight into host and tissue specificity of plant Pathogenic Xanthomonas spp. Bogdanove Adam J., Koebnik Ralf, Lu Hong, Furutani Ayako, Angiuoli Samuel V., Patil Prabhu B., Van Sluys Marie-Anne, Ryan Robert P., Meyer Damien, Han Sang-Wook, Aparna Gudlur, Rajaram Misha, Delcher Arthur L., Phillippy Adam M., Puiu Daniela, Schatz Michael C., Shumway Martin, Sommer Daniel D., Trapnell Cole, Benahmed Faiza, Dimitrov George, Madupu Ramana, Radune Diana, Sullivan Steven, Jha Gopaljee, Ishihara Hiromichi, Lee Sang-Won, Pandey Alok, Sharma Vikas, Sriariyanun Malinee, Szurek Boris, Vera-Cruz Casiana M., Dorman Karin S., Ronald Pamela C., Verdier Valérie, Dow J. Maxwell, Sonti Ramesh V., Tsuge Seiji, Brendel Volker P., Rabinowicz Pablo D., Leach Jan E., White Frank F., Salzberg Steven L.. 2011. Journal of Bacteriology, 193 (19) : 5450-5464.

Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus). Soler Lucile, Conte Matthew A., Katagiri Takayuki, Howe Aimée E., Lee Bo-Young, Amemiya Chris, Stuart Andrew, Dossat Carole, Poulain Julie, Johnson Jeremy, Di Palma Frederica, Lindblad-Toh Kerstin, Baroiller Jean-François, D'Cotta Helena, Ozouf-Costaz Catherine, Kocher Thomas D.. 2010. BMC Genomics, 11 (636), 8 p.

An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags. Lee Bo-Young, Howe Aimée E., Conte Matthew A., D'Cotta Helena, Pepey Elodie, Baroiller Jean-François, Di Palma Frederica, Carleton Karen L., Kocher Thomas D.. 2010. BMC Genomics, 11:278, 10 p.

Evolution of endogenous sequences of Banana Streak Virus: what can we learn from banana (Musa sp.) evolution? Gayral Philippe, Blondin Laurence, Guidolin Olivier, Carreel Françoise, Hippolyte Isabelle, Perrier Xavier, Iskra Caruana Marie-Line. 2010. Journal of Virology, 84 (14) : 7346-7359.

Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0). Cornuet Jean-Marie, Ravigné Virginie, Estoup Arnaud. 2010. BMC Bioinformatics, 11 (401), 11 p.

Isolation of three members of the multigene family encoding ACC oxidases in Hevea brasiliensis and investigation of their responses to ethylene stimulation and wounding. Kuswanhadi, Leclercq Julie, Rio Maryannick, Tregear James, Ducamp-Collin Marie-Noelle, Montoro Pascal. 2010. Journal of Rubber Research, 13 (3) : 185-205.

Mechanisms of haplotype divergence at the RGA08 nucleotide-binding leucine-rich repeat gene locus in wild banana (Musa balbisiana). Baurens Franc-Christophe, Bocs Stéphanie, Rouard Mathieu, Matsumoto Takashi, Miller Roberto Neil Gerard, Rodier-Goud Marguerite, Mbéguié-A-Mbéguié Didier, Yahiaoui Nabila. 2010. BMC Plant Biology, 10 (149), 16 p.

Multilocus sequence analysis of root nodule isolates from Lotus arabicus (Senegal), Lotus creticus, Argyrolobium uniflorum and Medicago sativa (Tunisia) and description of Ensifer numidicus sp. nov. and Ensifer garamanticus sp. nov. Mérabet Chahinez, Martens M., Mahdhi Mosbah, Zakhia Frédéric, Sy Abdoulaye, Le Roux Christine, Domergue Odile, Coopman R., Bekki Abdelkader, Mars Messaoud, Willems Anne, De Lajudie Philippe. 2010. International Journal of Systematic and Evolutionary Microbiology, 60 (3) : 664-674.

Newcastle disease virus in Madagascar: identification of an original genotype possibly deriving from a died out ancestor of genotype IV. Maminiaina Olivier Fridolin, Gil Patricia, Briand François-Xavier, Albina Emmanuel, Keita Djénéba, Harentsoaniaina Rasamoelina Andriamanivo, Chevalier Véronique, Lancelot Renaud, Martinez Dominique, Rakotondravao René, Rajaonarison Jean-Joseph, Koko M., Andriantsimahavandy Abel A., Jestin Véronique, Servan de Almeida Renata. 2010. PloS One, 5 (11):e13987, 12 p.

Variable number of tandem repeat markers in the genome sequence of Mycosphaerella fijiensis, the causal agent of black leaf streak disease of banana (Musa spp). Garcia S.A.L., Van der Lee Theo A.J., Ferreira Claudia Fortes, Te Lintel Hekkert B., Zapater Marie-Françoise, Goodwin Stephen B., Kema Gert H.J., Souza M.T.. 2010. Genetics and Molecular Research, 9 (4) : 2207-2212.

A high-throughput data mining of single nucleotide polymorphisms in Coffea species expressed sequence tags suggests differential homeologous gene expression in the allotetraploid Coffea arabica 1[W]. Vidal Ramon Oliveira, Mondego Jorge M.C., Pot David, Batista Ambrosio Alinne, Carvalho Andrade Alan, Protasio Pereira Luiz Filipe, Colombo Carlos Augusto, Vieira Luiz Gonzaga Esteves, Carazzolle Marcelo Falsarella, Guimarães Pereira Gonçalo Amarante. 2010. Plant Physiology, 154 (3) : 1053-1066.

A large est resource for Theobroma cacao including cDNAS isolated from various organs and under various biotic and abiotic stresses. Lanaud Claire, Fouet Olivier, Gramacho Karina Peres, Argout Xavier, Legavre Thierry, Sabau Xavier, Risterucci Ange-Marie, Wincker Patrick, Da Silva Corinne, Loor Rey Gaston, Lopes Uilson Vanderlei, Cascardo Julio Cezar M., Courtois Brigitte, Kuhn David N., Schnell Raymond J., Bailey Bryan, Babin Régis, Sounigo Olivier, Ducamp Michel, Paulin Didier, Deberdt Peninna, Verica Joseph, Guiltinan Mark J., Alemanno Laurence, Machado Regina, Phillips Wilbert, Micheli Fabienne, Da Silva Gesteira Abelmon, Clément Didier, Maximova Siela N., Boccara Michel, Butler David R., Rosenquist Eric, Gilmour Martin, Glaszmann Jean-Christophe. 2010. In : 15th International Cocoa Research Conference : cocoa productivity, quality, profitability, human health and the environment = 15e Conférence internationale sur la recherche cacaoyère : Productivité, qualité, rentabilité du cacao, santé humaine et environnement ; 15 Conferencia Internacional de Pesquisas em Cacau. Cacau : produtividade, qualidade, rentabilidade, saude humanna e amb. Lagos : Cocoa Producers' Alliance, 185-191. Conférence internationale sur la recherche cacaoyère. 15, San José, Costa Rica, 9 Octobre 2006/14 Octobre 2006.

Complete biosynthetic gene set for synthesis of polyketide antibiotics, including the albicidin family, resistance genes and uses thereof. Royer Monique, Gabriel Dean W., Frutos Roger, Rott Philippe. 2009. Washington : USPTO, 150 p. N° de dépôt : 10/531,351, N° de brevet : US7510852 B2, N° de brevet international : WO2004/035760 A3, N° de dépôt international : PCT/US2003/033142, N° de dépôt européen : 03777698.6, N° de brevet européen : EP1572966 B1

Histoire évolutive d'intégrations virales infectieuses chez les bananiers M. balbisiana. Gayral Philippe, Guidolin Olivier, Blondin Laurence, Hippolyte Isabelle, Perrier Xavier, Iskra Caruana Marie-Line. 2009. In : 12èmes Rencontres de virologie végétale, Aussois du 18 au 22 janvier 2009. Brault Véronique (ed.), Ziegler-Graff Véronique (ed.), Revers Frédéric (ed.). SFP. Paris : CNRS, Résumé, 4. Rencontres de virologie végétale. 12, Aussois, France, 18 Janvier 2009/22 Janvier 2009.

How to control and prevent the spread of banana streak disease when the origin could be viral sequences integrated in banana genome? Iskra Caruana Marie-Line, Gayral Philippe, Galzi Serge, Laboureau Nathalie. 2009. In : Proceedings of the international symposium on recent advances in banana crop protection for sustainable production and improved livelihoods, White River, South Africa, September 10-14, 2007. Jones David R. (ed.), Van den Bergh Inge (ed.). ISHS. Louvain : ISHS [Belgique], 77-84. (Acta Horticulturae, 828) ISBN 978-90-6605-488-2 International Symposium on recent advances in banana crop protection for sustainable production and improved livelihoods. 1, White River, Afrique du Sud, 10 Septembre 2007/14 Septembre 2007.

Hypermutability of genes in Homo sapiens due to the hosting of long mono-SSR. Loire Etienne, Praz Françoise, Higuet Dominique, Netter Pierre, Achaz Guillaume. 2009. Molecular Biology and Evolution, 26 (1) : 111-121.

Identification of an active LTR retrotransposon in rice. Picault Nathalie, Chaparro Christian, Piegu Benoît, Stenger Wilfried, Formey Damien, Llauro Christel, Descombin Julie, Sabot François, Lasserre Eric, Meynard Donaldo, Guiderdoni Emmanuel, Panaud Olivier. 2009. Plant Journal, 58 (5) : 754-765.

Increasing accuracy and throughput in large-scale microsatellite fingerprinting of cacao field germplasm collections. Motilal Lambert A., Zhang Dapeng, Umaharan Pathmanathan, Mischke Sue, Boccara Michel, Pinney Andrew. 2009. Tropical Plant Biology, 2 (1) : 23-37.

Innovative approach for transcriptomic analysis of obligate intracellular pathogen: Selective capture of transcribed sequences of Ehrlichia ruminantium. Emboule Loïc, Daigle France, Meyer Damien, Mari Bernard, Pinarello Valérie, Sheikboudou Christian, Magnone Virginie, Frutos Roger, Viari Alain, Barbry Pascal, Martinez Dominique, Lefrançois Thierry, Vachiery Nathalie. 2009. BMC Molecular Biology, 10:111, 12 p.

Method for detecting Ralstonia solanacearum race 3 biovar 2. Boucher Christian, Elbaz Mounira, Genin Stéphane, Guidot Alice, Prior Philippe. 2009. Munich : Office Européen des Brevets, 246 p. N° de dépôt européen : 07291213.2, N° de brevet européen : EP2045333 A1, N° de dépôt international : PCT/EP2008/063298, N° de brevet international : WO2009043937 A2, N° de brevet européen : EP2198051 A2

Molecular evidence for the association of a strain of Uganda variant of East African cassava mosaic virus to symptom severity in cassava (Manihot esculenta Crantz) fields in Togo. Adjata K.D., Muller Emmanuelle, Peterschmitt Michel, Traoré Oumar, Gumedzoe M.Y.D.. 2009. American Journal of Biochemistry and Biotechnology, 5 (4) : 196-201.

Molecular phylogeny of Pisolithus species from Moroccan forest woodlands. Bakkali-Yakhlef Salahedine, Mousain Daniel, Duponnois Robin, Ducousso Marc, Belkouri Abdellatif, Kerdouh Benaissa, Perrineau Marie-Mathilde, Abourouh Mohamed. 2009. Symbiosis, 49 (3) : 157-162.

OryGenesDB 2008 update: Database interoperability for functional genomics of rice. Droc Gaëtan, Perin Christophe, Fromentin Sébastien, Larmande Pierre. 2009. Nucleic Acids Research, 37, suppl. 1, D992-D995

Plusieurs types d'insertions virales dans le génome des bananiers peuvent conduire à une infection. Gayral Philippe, Guidolin Olivier, Blondin Laurence, Laboureau Nathalie, Royer Monique, Iskra Caruana Marie-Line. 2009. In : 12èmes Rencontres de virologie végétale, Aussois du 18 au 22 janvier 2009. Brault Véronique (ed.), Ziegler-Graff Véronique (ed.), Revers Frédéric (ed.). SFP. Paris : CNRS, Résumé, 64. Rencontres de virologie végétale. 12, Aussois, France, 18 Janvier 2009/22 Janvier 2009.

Plusieurs types d'insertions virales dans le génome des bananiers peuvent conduire à une infection. Gayral Philippe, Guidolin Olivier, Blondin Laurence, Laboureau Nathalie, Royer Monique, Iskra Caruana Marie-Line. 2009. In : 12èmes Rencontres de virologie végétale, Aussois du 18 au 22 janvier 2009. SFP. s.l. : s.n., 1 p. Rencontres de virologie végétale. 12, Aussois, France, 18 Janvier 2009/22 Janvier 2009.

Single nucleotide polymorphisms from Theobroma cacao expressed sequence tags associated with witches' broom disease in cacao. Lima Leila S., Gramacho Karina Peres, Carels Nicolas, Novais R., Gaiotto Fernanda Amato, Lopes Uilson Vanderlei, Gesteira Abelmon, Zaidan Humberto A., Cascardo Julio Cezar M., Pires José Luis, Micheli Fabienne. 2009. Genetics and Molecular Research, 8 (3) : 799-808.

Variation in intron length in caffeic acid O-methyltransferase (COMT) in Vanilla species (Orchidaceae). Besse Pascale, Da Silva Denis, Bory Séverine, Noirot Michel, Grisoni Michel. 2009. Plant Science, 176 (4) : 425-460.

Analyse, fonction et diversité des génomes viraux des plantes et élaboration de stratégies de lutte. Teycheney Pierre-Yves. 2008. Pointe-à-Pitre : UAG, 58 p. Habilitation à diriger des recherches : Université des Antilles et de la Guyane

Analysis of non-TIR NBS-LRR resistance gene analogs in Musa acuminata Colla: Isolation, RFLP marker development, and physical mapping. Miller Roberto Neil Gerard, Bertioli David J., Baurens Franc-Christophe, Santos Candice M.R., Alves P.C., Martins Natalia, Togawa Roberto Coiti, Souza Manoel, Pappas Junior Georgios. 2008. BMC Plant Biology, 8 (15), 15 p.

Base génétique de l'architecture des caféiers arabica. Exploration d'une base de données architecturales. Pérouel Guillaume. 2008. Montpellier : UM2, 47 p. Mémoire DEA : Biostatistiques : Université Montpellier 2

Cacao swollen shoot virus. Muller Emmanuelle. 2008. In : Characterization, diagnosis and management of plant viruses. Industrial crops. Rao Govind P. (ed.), Paul Khurana S.M. (ed.), Lenardon Sergio L. (ed.). Houston : Studium Press LLC, 423-444. (Plant pathogens series, 1) ISBN 1-933699-31-0

"Candidatus cloacamonas acidaminovorans": Genome sequence reconstruction provides a first glimpse of a new bacterial division. Pelletier Eric, Kreimeyer Annett, Bocs Stéphanie, Rouy Zoe, Gyapay Gabor, Chouari Rakia, Rivière Delphine, Ganesan Akila, Daegelen Patrick, Sghir Abdelghani, Cohen Georges N., Medigue Claudine, Weissenbach Jean, Le Paslier Denis. 2008. Journal of Bacteriology, 190 (7) : 2572-2579.

Deciphering transcriptional networks that govern Coffea arabica seed development using combined cDNA array and real-time RT-PCR approaches. Salmona Jordi, Dussert Stéphane, Descroix Frédéric, De Kochko Alexandre, Bertrand Benoît, Joët Thierry. 2008. Plant Molecular Biology, 66 (1-2) : 105-124.

Development of genomic resources for Citrus clementina : Characterization of three deep-coverage BAC libraries and analysis of 46,000 BAC end sequences. Terol Javier F., Naranjo Miguel Angel, Ollitrault Patrick, Talon Manuel. 2008. BMC Genomics, 9 (423), 12 p.

Differential strain-specific diagnosis of the heartwater agent: Ehrlichia ruminantium. Vachiery Nathalie, Maganga Gaël Darren, Lefrançois Thierry, Kandassamy Yane, Stachurski Frédéric, Adakal Hassane, Ferraz Conchita, Morgat Anne, Bensaïd Albert, Coissac Eric, Boyer Frédéric, Demaille Jacques, Viari Alain, Martinez Dominique, Frutos Roger. 2008. Infection, Genetics and Evolution, 8 (4) : 459-466. International Congress on Molecular Epidemiology and Evolutionary Genetics of Infectious Diseases. 8, Bangkok, Thaïlande, 30 Octobre 2006/2 Novembre 2006.

Evolution des pararétrovirus endogènes de plantes : le cas des séquences intégrées du Banana streak virus chez le bananier (Musa sp.). Gayral Philippe. 2008. Montpellier : UM2, 250 p. Thèse de doctorat : Biologie de l'évolution et écologie : Université Montpellier 2

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. Salzberg Steven L., Sommer Daniel D., Schatz Michael C., Phillipy Adam M., Rabinowicz Pablo D., Tsuge Seiji, Furutani Ayako, Ochiai Hirokazu, Delcher Arthur L., Kelley David, Madapu Ramana, Puiu Daniela, Radune Diana, Shumway Martin, Trapnell Cole, Aparna Gudlur, Jha Gopaljee, Pandey Alok, Patil Prabhu B., Hishihara Hiromichi, Szurek Boris, Meyer Damien. 2008. BMC Genomics, 9 (204), 16 p.

A Genome-wide meta-analysis of rice blast resistance genes and quantitative trait loci provides new insights into partial and complete resistance. Ballini Elsa, Morel Jean-Benoit, Droc Gaëtan, Price Adam H., Courtois Brigitte, Nottéghem Jean-Loup, Tharreau Didier. 2008. Molecular Plant-Microbe Interactions, 21 (7) : 859-868.

Genotyping of Mycoplasma mycoides subsp. mycoides SC by multilocus sequence analysis allows molecular epidemiology of contagious bovine pleuropneumonia. YaYa Aboubakar, Manso-Silvan Lucia, Blanchard Alain, Thiaucourt François. 2008. Veterinary Research, 39 (2) : 1-19.

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. Holt Kathryn E., Parkhill Julian, Mazzoni Camila J., Roumagnac Philippe, Weill François-Xavier, Goodhead Ian, Rance Richard, Baker Stephen, Maskell Duncan J., Wain John, Dolecek Christiane, Achtman Mark, Dougan Gordon. 2008. Nature Genetics, 40 (8) : 987-993.

Insights into the Musa genome : Syntenic relationships to rice and between Musa species. Lescot Magali, Piffanelli Pietro, Ciampi Ana, Ruiz Manuel, Blanc Guillaume, Leebens-Mack Jim, Da Silva Felipe, Santos Candice M.R., D'Hont Angélique, Garsmeur Olivier, Vilarinhos Alberto Duarte, Kanamori Hiroyuki, Matsumoto Takashi, Ronning Catherine, Cheung Foo, Haas Brian, Althoff Ryan, Arbogast Tammy, Hine Erin, Pappas Junior Georgios, Sasaki Takuji, Souza Manoel, Miller Roberto Neil Gerard, Glaszmann Jean-Christophe, Town Christopher. 2008. BMC Genomics, 9 (58), 20 p.

Ligation-mediated PCR, a fast and reliable technique for insertion sequence-based typing of Xanthomonas citri pv. citri. Bui Thi Ngoc Lan, Vernière Christian, Belasque José, Vital Karine, Boutry Sébastien, Gagnevin Lionel, Pruvost Olivier. 2008. FEMS Microbiology Letters, 288 (1) : 33-39.

Panicum streak virus diversity is similar to that observed for maize streak virus. Varsani Arvind, Oluwafemi Sunday, Windram Oliver P., Shepherd Dionne Natalie, Monjane Adérito Luis, Owor Betty E., Rybicki Edward P., Lefeuvre Pierre, Martin Darren Patrick. 2008. Archives of Virology, 153 (3) : 601-604.

Phylogeographic evidence of crop neodiversity in sorghum. De Alencar Figueiredo Lucio Flavio, Calatayud Caroline, Dupuits Céline, Billot Claire, Rami Jean-François, Brunel Denys, Perrier Xavier, Courtois Brigitte, Deu Monique, Glaszmann Jean-Christophe. 2008. Genetics, 179 (2) : 997-1008.

Recent lethal yellowing outbreak: Why is the Malayan Yellow Dwarf Coconut no longer resistant in Jamaica? Lebrun Patricia, Baudouin Luc, Myrie Wayne, Berger Angélique, Dollet Michel. 2008. Tree Genetics and Genomes, 4 (1) : 125-131.

Structure and distribution of a strain-biased tandem repeat element in fall armyworm (Lepidoptera: Noctuidae) populations in Florida, Texas, and Brazil. Nagoshi Rodney N., Armstrong John Scott, Silvie Pierre, Meagher Robert L.. 2008. Annals of the Entomological Society of America, 101 (6) : 1112-1120.

Structure and sequence motifs of siRNA linked with in vitro down-regulation of morbillivirus gene expression. Servan de Almeida Renata, Keita Djénéba, Libeau Geneviève, Albina Emmanuel. 2008. Antiviral Research, 79 (1) : 37-48.

Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions. Argout Xavier, Fouet Olivier, Wincker Patrick, Gramacho Karina Peres, Legavre Thierry, Sabau Xavier, Risterucci Ange-Marie, Da Silva Corinne, Cascardo Julio Cezar M., Allègre Mathilde, Kuhn David N., Verica Joseph, Courtois Brigitte, Loor Rey Gaston, Babin Régis, Sounigo Olivier, Ducamp Michel, Guiltinan Mark J., Ruiz Manuel, Alemanno Laurence, Machado Regina, Phillips Wilbert, Schnell Raymond J., Gilmour Martin, Rosenquist Eric, Butler David R., Maximova Siela N., Lanaud Claire. 2008. BMC Genomics, 9 (512), 19 p.

Utilisation d'une séquence complète du génome d'une souche de Mycoplasma mycoides Subsp. Mycoides LC pour la mise au point de tests de diagnostic, application à l'expression de gènes héérologues. Salah Woubit. 2008. Toulouse : INPT, 206 p. Thèse de doctorat : Science vétérinaire : Institut national polytechnique de Toulouse

The generation challenge programme comparative plant stress-responsive gene catalogue. Wanchana Samart, Thongjuea Supat, Jun Ulat Victor, Anacleto Mylah, Mauleon Ramil P., Conte Matthieu, Rouard Mathieu, Ruiz Manuel, Krishnamurthy Nandini, Sjolander Kimmen, Van Hintum Theo, Bruskiewich Richard. 2008. Nucleic Acids Research, 36 : 943-946.

A single Banana Streak Virus integration event in the banana genome as the origin of infectious endogenous pararetrovirus. Gayral Philippe, Noa-Carrazana Juan Carlos, Lescot Magali, Lheureux Fabrice, Lockhart Benham E.L., Matsumoto Takashi, Piffanelli Pietro, Iskra Caruana Marie-Line. 2008. Journal of Virology, 82 (13) : 6697-6710.

Analyse fonctionnelle de la diversité agronomique chez le sorgho (Sorghum bicolor ssp. bicolor) : sequence diversity and variability of key genes implied in grain quality. De Alencar Figueiredo Lucio Flavio. 2007. Montpellier : UM2, 200 p. Thèse de doctorat : Biologie intégrative des plantes : Université Montpellier 2

Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance. Terol Javier F., Conesa Ana, Colmenero Jose M., Cercos Manuel, Tadeo Francisco, Agusti Javier, Alos Enriqueta, Andres Fernando, Soler Guillermo, Brumos Javier, Iglesias Domingo, Götz Stefan, Legaz Francisco, Argout Xavier, Courtois Brigitte, Ollitrault Patrick, Dossat Carole, Wincker Patrick, Morillon Raphaël, Talon Manuel. 2007. BMC Genomics, 8 (31)

Avoidance of protein fold disruption in natural virus recombinants. Lefeuvre Pierre, Lett Jean-Michel, Reynaud Bernard, Martin Darren Patrick. 2007. PLoS Pathogens, 3 (11) : 1782-1789.

Caractérisation des translocations dans le génome de la banane par cytogénétique moléculaire. Bakry Frédéric, D'Hont Angélique. 2007. In : La plate-forme de recherches avancées Agropolis : génomique et biotechnologie = Agropolis advanced research platform. Genomics & Biotechnology. Savidan Yves (ed.). Agropolis. Montpellier : Agropolis, 23-27. (Les dossiers d'Agropolis International, 5)

Coffea spp. and Coffea canephora diversity evaluated with microsatellites and SNPs. Lessons from comparative analysis. Leroy Thierry, Cubry Philippe, Durand Noël, Dufour Magali, De Bellis Fabien, Jourdan Isabelle, Vieira Luiz Gonzaga Esteves, Musoli Chungason Pascal, Aluka P., Legnaté Hyacinthe, Marraccini Pierre, Pot David. 2007. In : 21st International Conference on Coffee Science, Montpellier (France), 11th - 15th September 2006 = 21ème Colloque scientifique international sur le café ; 21. Internationales Wissenshaftliches Kolloquium über Kaffee ; 21e Coloquio Cientifico Internacional sobre el Café. ASIC. Montpellier : ASIC, 827-834. ISBN 2-900212-20-0 Colloque Scientifique International sur le Café. 21, Montpellier, France, 11 Septembre 2006/15 Septembre 2006.

Comparative analysis of expressed genes from cacao meristems infected by Moniliophthora perniciosa. Gesteira Abelmon, Micheli Fabienne, Carels Nicolas, Da Silva Aline Clara, Gramacho Karina Peres, Schuster Ivan, Macêdo Joci Neuby Alves, Pereira Gonçalo Amarante Guimarães, Cascardo Julio Cezar M.. 2007. Annals of Botany, 100 (1) : 129-140.

Ehrlichia ruminantium : genomic and evolutionary features. Frutos Roger, Viari Alain, Vachiery Nathalie, Boyer Frédéric, Martinez Dominique. 2007. Trends in Parasitology, 23 (9) : 414-419.

Etude des interactions riz-Magnaporthe oryzae. Diversité, origine et évolution du locus du gène de résistance Pi33. Ballini Elsa. 2007. Montpellier : Montpellier SupAgro, 308 p. Thèse de doctorat : Biologie intégrative des plantes : Montpellier SupAgro Centre international d'études supérieures en sciences agronomiques

Eurytoma caninae sp. n. (Hymenoptera, Eurytomidae), a common species previously overlooked with E. rosae. Lotfalizadeh Hosseinali, Delvare Gérard, Rasplus Jean-Yves. 2007. Zootaxa (1640) : 55-68.

Evaluation of the mitochondrial COI gene as a useful genetic marker for Myndus crudus and other Myndus spp. Brown J.K., Dollet Michel. 2007. Phytopathology, 97 (7), suppl., Résumé, S174

Evidence for a founder effect after introduction of Tomato yellow leaf curl virus mild in an insular environment. Delatte Hélène, Holota Hélène, Moury Benoit, Reynaud Bernard, Lett Jean-Michel, Peterschmitt Michel. 2007. Journal of Molecular Evolution, 65 (1) : 112-118.

Functional characterization of MADS box genes involved in the determination of oil palm flower structure. Adam Hélène, Jouannic Stefan, Orieux Yves, Morcillo Fabienne, Richaud Frédérique, Duval Yves, Tregear James. 2007. Journal of Experimental Botany, 58 (6) : 1245-1259.

Genetic diversity in Coffea genus using microsatellites Loci. Cubry Philippe, Pot David, De Bellis Fabien, Musoli Chungason Pascal, Aluka P., Legnaté Hyacinthe, Dufour Magali, Leroy Thierry. 2007. In : 21st International Conference on Coffee Science, Montpellier (France), 11th - 15th September 2006 = 21ème Colloque scientifique international sur le café ; 21. Internationales Wissenshaftliches Kolloquium über Kaffee ; 21e Coloquio Cientifico Internacional sobre el Café. ASIC. Montpellier : ASIC, 916-921. ISBN 2-900212-20-0 Colloque Scientifique International sur le Café. 21, Montpellier, France, 11 Septembre 2006/15 Septembre 2006.

Herpetomonas spp. isolated from tomato fruits (Lycopersicon esculentum) in southern Spain. Marin Clotilde, Fabre Sandrine, Sanchez Moreno Manuel, Dollet Michel. 2007. Experimental Parasitology, 116 : 88-90.

Histoire évolutive d'une intégration virale pathogène : les EPRV du Banana streak virus chez les bananiers Musa balbisiana. Gayral Philippe, Laboureau Nathalie, Iskra Caruana Marie-Line. 2007. In : 11 èmes Rencontres de virologie végétale, Aussois, 28 janvier au 1er février 2007. s.l. : s.n., Résumé, 1 p. Rencontres de virologie végétale. 11, Aussois, France, 28 Janvier 2007/1 Février 2007.

ISSR-PCR : tool for discrimination and genetic structure analysis of lPlutella xylostella populations native to different geographical areas. Roux Olivier, Gevrey M., Arvanitakis Laurence, Gers Charles, Bordat Dominique, Legal Luc. 2007. Molecular Phylogenetics and Evolution, 43 : 240-250.

Identification of new potential regulators of the Medicago truncatula-Sinorhizobium meliloti symbiosis using a large-scale suppression subtractive hybridization approach. Godiard Laurence, Niebel Andreas, Micheli Fabienne, Gouzy Jérôme, Ott Thomas, Gamas Pascal. 2007. Molecular Plant-Microbe Interactions, 20 (3) : 321-332.

Importance de l'origine endogène du BSV dans l'émergence et le maintien d'épidémies. Laboureau Nathalie, Iskra Caruana Marie-Line, Blondin Laurence, Muller Emmanuelle. 2007. In : 11 èmes Rencontres de virologie végétale, Aussois, 28 janvier au 1er février 2007. s.l. : s.n., Résumé, 1 p. Rencontres de virologie végétale. 11, Aussois, France, 28 Janvier 2007/1 Février 2007.

Integrations of Banana streak virus sequences in the genome of the banana Musa balbisiana : Endogenous viruses of host genes? Gayral Philippe, Laboureau Nathalie, Iskra Caruana Marie-Line. 2007. In : 11th Congress of the European Society for Evolutionary Biology, Uppsala, Sweden, August 20-25, 2007. ESEB. s.l. : s.n., Résumé, 1 p. Congress of the European Society for Evolutionary Biology. 11, Uppsala, Suède, 20 Août 2007/25 Août 2007.

Legumes symbioses : Absence of Nod genes in photosynthetic bradyrhizobia. Giraud Eric, Moulin Lionel, Vallenet David, Barbe Valérie, Cytryn Eddie, Avarre Jean-Christophe, Jaubert Marianne, Simon Damien, Cartieaux Fabienne, Prin Yves, Béna Gilles, Hannibal Laure, Fardoux Joël, Kojadinovic Mila, Vuillet Laurie, Lajus Aurélie, Cruveiller Stéphane, Rouy Zoe, Mangenot Sophie, Segurens Béatrice, Dossat Carole, Franck William L., Chang Woo-Suk, Saunders Elizabeth, Bruce David, Richardson Paul, Normand Philippe, Dreyfus Bernard, Pignol David, Stacey Gary, Emerich David, Vermeglio André, Medigue Claudine, Sadowsky Michael. 2007. Science, 316 (5829) : 1307-1312.

Microsatellite diversity in tetraploid Gossypium germplasm : assembling a highly informative genotyping set of cotton SSRs. Lacape Jean-Marc, Dessauw Dominique, Rajab Mazen, Noyer Jean-Louis, Hau Bernard. 2007. Molecular Breeding, 19 (1) : 45-58.

Molecular analysis of Banana streak virus (BSV) in the nuclear genome of Musa balbisiana. Noa-Carrazana Juan Carlos, Lescot Magali, Piffanelli Pietro, Safar Jan, Dolezel Jaroslav, Matsumoto Takashi, Silva-Rosales Laura, Lheureux Fabrice, Teycheney Pierre-Yves, Sasaki Takuji, Iskra Caruana Marie-Line. 2007. In : First ISHS : ProMusa ProMusa Symposium: Recent advances in banana crop protection for sustainable production and improved livelihoods, White River, South Africa, 10-14 september 2007. ISHS. Montpellier : Cirad, Résumé, 1 p. International Symposium on recent advances in banana crop protection for sustainable production and improved livelihoods. 1, White River, Afrique du Sud, 10 Septembre 2007/14 Septembre 2007.

Molecular analysis of a full-length sequence of a new yam badnavirus from Dioscorea sansibarensis. Seal Sue E., Muller Emmanuelle. 2007. Archives of Virology, 152 (4) : 819-825.

Molecular characterization of a pathogenic integration of the Golfinger Gf species of banana streak virus in the genome of Musa balbisiana. Gayral Philippe, Laboureau Nathalie, Iskra Caruana Marie-Line. 2007. In : First ISHS : ProMusa ProMusa Symposium: Recent advances in banana crop protection for sustainable production and improved livelihoods, White River, South Africa, 10-14 september 2007. ISHS. Montpellier : Cirad, Résumé, 1 p. International Symposium on recent advances in banana crop protection for sustainable production and improved livelihoods. 1, White River, Afrique du Sud, 10 Septembre 2007/14 Septembre 2007.

Molecular detection and characterization of phytoplasmas associated with lethal yellowing disease of coconut palms in Jamaica. Myrie Wayne, Harrison Nigel, Dollet Michel, Been Basil. 2007. Bulletin of Insectology, 60 (2) : 159-160. Annual Meeting of the International Phytoplasmologist Working Group. 1, Bologne, Italie, 12 Novembre 2007/15 Novembre 2007.

Molecular identification of Western European species of obsoletus complex (Diptera: Ceratopogonidae) by an internal transcribed spacer-1 rDNA multiplex polymerase chain reaction assay. Mathieu Bruno, Perrin Aurélie, Baldet Thierry, Delecolle Jean Claude, Albina Emmanuel, Cetre-Sossah Catherine. 2007. Journal of Medical Entomology, 44 (6) : 1019-1025.

Possible roles of endogenous plant viral sequences and transgenes containing viral sequences in both virus resistance and virus emergence. Teycheney Pierre-Yves, Tepfer Mark. 2007. Environmental Biosafety Research, 6 (4) : 219-221.

Purification and characterization of cassiicolin, the toxin produced by Corynespora cassiicola, causal agent of the leaf fall disease of rubber tree. De Lamotte Frédéric, Duviau Marie-Pierre, Sanier Christine, Thai Robert, Poncet Joël, Bieysse Daniel, Breton Frédéric, Pujade-Renaud Valérie. 2007. Journal of Chromatography. B (849) : 357-362.

Rational sub-division of plant trypanosomes (Phytomonas spp.) based on minicircle conserved region analysis. Sturm Nancy R., Dollet Michel, Lukes Julius, Campbell David A.. 2007. Infection, Genetics and Evolution, 7 (5) : 570-576.

Toward sequencing cotton (Gossypium) genomes. Chen Z. Jeffrey, Scheffler Brian, Dennis Elizabeth, Triplett Barbara .A., Zhang Tianzhen, Guo Wangzhen, Chen Xiaoqian, Stelly David M., Rabinowicz Pablo D., Town Christopher, Arioli Tony, Brubaker Curt, Cantrell Roy G., Lacape Jean-Marc, Ulloa Mauricio, Chee Peng, Gingle Alan R., Haigler Candace H., Percy Richard, Saha Sukumar, Wilkins Thea, Wright Robert J., Van Deynze Allen, Zhu Yuxian, Yu Shuxun, Abdurakhmonov Ibrokhim, Katageri Ishwarappa, Kumar P. Ananda, Mehboob-ur-Rahman, Zafar Yusuf, Yu John Z., Kohel Russell J., Wendel Jonathan F., Paterson Andrew H.. 2007. Plant Physiology, 145 : 1303-1310.

The exploration of the pathosystem BSV/Musa sp. : How does it work? Gayral Philippe, Lheureux Fabrice, Noa-Carrazana Juan Carlos, Lescot Magali, Piffanelli Pietro, Carreel Françoise, Jenny Christophe, Iskra Caruana Marie-Line. 2007. In : First Biosafenet Seminar, 6-8 June 2007, Venice, Italy. ICGEB. s.l. : s.n., Résumé, 1 p. Biosafenet Seminar. 1, Venise, Italie, 6 Juin 2007/8 Juin 2007.

A large EST resource for theobroma cacao L. Lanaud Claire, Fouet Olivier, Gramacho Karina Peres, Argout Xavier, Legavre Thierry, Sabau Xavier, Risterucci Ange-Marie, Wincker Patrick, Da Silva Corinne, Loor Solorzano Rey Gaston, Cascardo Julio Cezar M., Courtois Brigitte, Kuhn David N., Schnell Rey J., Babin Régis, Sounigo Olivier, Ducamp Michel, Deberdt Peninna, Verica Joseph, Guiltinan Mark J., Alemanno Laurence, Machado Regina, Philips Wilbert, Maximova Siela N., Rosenquist Eric, Gilmour Martin, Glaszmann Jean-Christophe. 2007. In : Abstracts of Plant and Animal Genomes XVth Conference, San Diego, CA (USA), January 13-17, 2007. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 15, San Diego, États-Unis, 13 Janvier 2007/17 Janvier 2007.

Abscence de gènes nod chez certaines souches de Bradyrhizobium photosynthétiques révélée par l'analyse de la séquence de leurs génomes. Moulin Lionel, Avarre Jean-Christophe, Jaubert Marianne, Barbe Valérie, Béna Gilles, Cartiaux F., Delajudie P., Dreyfus Bernard, Elmerich D., Fardoux Joël, Hannibal L., Kojadinovic Mila, Lajus Aurélie, Mangenot S.G., Medigue Claudine, Pignol David, Prin Yves, Rouy Zoe, Stacey Gary, Sadowsky Michael, Vallenet D., Vermeglio André, Vuillet Laurie, Giraud E.. 2006. In : 7èmes Rencontres plantes-bactéries, 20-23 mars 2006, Aussois, France. Résumés. SFP. Angers : INRA, Résumé, 39. Rencontres plantes-bactéries. 7, Aussois, France, 20 Mars 2006/24 Mars 2006.

Cloning of Pi33, the rice resistance gene corresponding to the cloned avirulence gene ACE1 of Magnaporthe grisea. Ballini Elsa, Bordat Amandine, Vergne Emilie, Morel Jean-Benoit, Lebrun Marc-Henri, Nottéghem Jean-Loup, Tharreau Didier. 2006. In : Journées Jean Chevaugeon : VIe rencontres de phytopathologie - mycologie de la Societé française de phytopathologie du 15 au 19 janvier 2006 [Résumés]. Fernandez Diana (ed.), Carlier Jean (ed.), Tharreau Didier (ed.). CIRAD, INRA, IRD, Bayer cropscience, SFP. Montpellier : CIRAD, Résumé, 92. Journées Jean Chevaugeon, Rencontres de phytopathologie-mycologie. 6, Aussois, France, 15 Janvier 2006/19 Janvier 2006.

Efficient Agrobacterium tumefaciens-mediated transformation of embryogenic calli and regeneration of Hevea brasiliensis Müll Arg. plants. Blanc Géraldine, Baptiste Christelle, Oliver Gérald, Martin Florence, Montoro Pascal. 2006. Plant Cell Reports, 24 (12) : 724-733.

Etude de la taxonomie des Xanthomonas associées aux anacardiacées. Ah-You Nathalie, Gagnevin Lionel, Pruvost Olivier. 2006. In : 7èmes Rencontres plantes-bactéries, 20-23 mars 2006, Aussois, France. Résumés. SFP. Angers : INRA, Résumé, 30. Rencontres plantes-bactéries. 7, Aussois, France, 20 Mars 2006/24 Mars 2006.

Genotyping of Sugarcane yellow leaf virus in Colombia, Guadeloupe and Reunion. Abu Ahmad Youssef, Royer Monique, Costet Laurent, Daugrois Jean-Heinrich, Lett Jean-Michel, Victoria Jorge I., Rott Philippe. 2006. In : VIIIth ISSCT Pathology Workshop Petit-Bourg, Guadeloupe (FWI), 23-27 January 2006, programme and abstracts. Daugrois Jean-Heinrich. ISSCT, CIRAD-CA. Réduit : ISSCT, Résumé ISSCT Pathology Workshop. 8, Petit-Bourg, Guadeloupe, 23 Janvier 2006/27 Janvier 2006.

Identification of potyviruses infecting vanilla by direct sequensing of a short RT-PCR amplicon. Grisoni Michel, Moles Marion, Farreyrol Karin, Rassaby Laurence, Davis R., Pearson Michael N.. 2006. Plant Pathology, 55 (4) : 523-529.

Isolement et caractérisation des gènes ACS et ACO impliqués dans la biosynthèse de l'éthylène chez Hevea brasiliensis. Kuswanhadi. 2006. Montpellier : UM2, 166 p. Thèse de doctorat : Amélioration des plantes : Université Montpellier 2

MADS Box Genes in Oil Palm (Elaeis guineensis) : Patterns in the Evolution of the SQUAMOSA, DEFICIENS, GLOBOSA, AGAMOUS, and SEPALLATA Subfamilies. Adam Hélène, Jouannic Stefan, Morcillo Fabienne, Richaud Frédérique, Duval Yves, Tregear James. 2006. Journal of Molecular Evolution, 62 (1) : 15-31.

Physical delimitation of the pepper Bs3 resistance gene specifying recognition of the AvrBs3 protein from Xanthomonas campestris pv. vesicatoria. Jordan Tina, Römer Patrick, Meyer Annett, Szczesny Robert, Pierre Michèle, Piffanelli Pietro, Bendahmane Abdel, Bonas Ulla, Lahaye Thomas. 2006. Theoretical and Applied Genetics, 113 (5) : 895-905.

Polymorphism and position analysis of dinucleotide and trinucleotide microsatellite sequences detected in citrus clementine cv. EST sequences. Luro François, Argout Xavier, Costantino Gilles, Froelicher Yann, Terol Javier F., Agusti Javier, Alos Enriqueta, Andres Fernando, Brumos Javier, Carillo J.A., Cercos Manuel, Colmenero Jose M., Conejero Vicente, Conesa Ana, Iglesias Domingo, Legaz Francisco, Navarro Luis, Soler Guillermo, Tadeo Francisco, Talon Manuel, Courtois Brigitte, Dossat Carole, Wincker Patrick, Ollitrault Patrick, Morillon Raphaël. 2006. In : Abstracts of Plant and Animal Genomes XIVth Conference, San Diego, CA (USA), January 14-18, 2006. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 14, San Diego, États-Unis, 14 Janvier 2006/18 Janvier 2006.

SPODOBASE: An EST database for the lepidopteran crop pest Spodoptera. Nègre Vincent, Hôtelier Thierry, Volkoff Anne-Nathalie, Gimenez Sylvie, Cousserans François, Mita Kazuei, Sabau Xavier, Rocher Janick, Lopez-Ferber Miguel, D'Alençon Emmanuelle, Audant Pascaline, Sabourault Cécile, Bidegainberry Vincent, Hilliou Frédérique, Fournier Philippe. 2006. BMC Bioinformatics, 7 (322), 10 p.

Test de détection de Xanthomonas axonopodis pv dieffenbachiae. Robène-Soustrade Isabelle, Laurent Philippe, Gagnevin Lionel. 2006. Paris : INPI, 24 p. N° de dépôt : 0215279, N° de brevet : FR2848222 B1, N° de dépôt : 1024929, N° de brevet : NLC1024929

Vers l'identification des gènes impliqués dans la pathogénie de Xanthomonas albilineans, l'agent causal de l'échaudure des feuilles de canne à sucre. Champoiseau Patrice, Daugrois Jean-Heinrich, Royer Monique, Rott Philippe. 2006. In : 7èmes Rencontres plantes-bactéries, 20-23 mars 2006, Aussois, France. Résumés. SFP. Angers : INRA, Résumé, 46. Rencontres plantes-bactéries. 7, Aussois, France, 20 Mars 2006/24 Mars 2006.

Analysis of citrus ESTs from standard and normalized full length cDNA libraries. Terol Javier F., Agusti Javier, Alos Enriqueta, Andres Fernando, Argout Xavier, Brumos Javier, Carrillo Jose A., Cercos Manuel, Colmenero Jose M., Conejero Vicente, Conesa Ana, Courtois Brigitte, Dossat Carole, Iglesias Domingo, Legaz Francisco, Morillon Raphaël, Navarro Luis, Ollitrault Patrick, Soler Guillermo, Tadeo Francisco, Wincker Patrick, Talon Manuel. 2005. In : Abstracts of Plant and Animal Genomes XIIIth Conference, San Diego, CA (USA), January 15-19, 2005. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 13, San Diego, États-Unis, 15 Janvier 2005/19 Janvier 2005.

Analysis of the Musa genome from BAC sequencing and its comparison with rice. Piffanelli Pietro, Ciampi Ana, Ruiz Manuel, Rodrigues da Silva Felipe, Lescot Magali, Papas Georgios J., Ronning Catherine, Haas Brian, Wortman Jennifer, Frison Emile A., Roux Nicolas, Miller Roberto Neil Gerard, Côte François-Xavier, D'Hont Angélique, Souza Manoel, Glaszmann Jean-Christophe, Town Christopher. 2005. In : Abstracts of Plant and Animal Genomes XIIIth Conference, San Diego, CA (USA), January 15-19, 2005. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 13, San Diego, États-Unis, 15 Janvier 2005/19 Janvier 2005.

Biosynthèse de l'albicidine, une molécule antibiotique et une pathotoxine de Xanthomonas albilineans. Vivien Eric. 2005. Montpellier : UM2, 188 p. Thèse de doctorat : Microbiologie moléculaire : Université Montpellier 2

Caractérisation de la diversité génétique des Begomovirus responsables de la maladie de la mosaïque du manioc dans les archipels des Comores et des Seychelles. Villar Emilie. 2005. Paris : Université Pierre et Marie Curie, 39 p. Mémoire de master : Pathologie et protection intégrée : Université Pierre et Marie Curie

Conservation of xylem preferentially expressed tags in several subgenera of Eucalyptus l'Hérit. Gion Jean-Marc, Cabannes Emmanuelle, Poitel Mireille, Vigneron Philippe. 2005. In : Abstracts of Plant and Animal Genomes XIIIth Conference, San Diego, CA (USA), January 15-19, 2005. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 13, San Diego, États-Unis, 15 Janvier 2005/19 Janvier 2005.

Construction of a reference microsatelliete genetic map of Magnaporthe grisea and its use for mapping avirulence genes. Kaye Claudia, Bordat Amandine, Wang Yanli, Li Chengyun, Sreewongchai Tanee, Rosenfeld Sophie, Sirithunya Pattama, Shen Ying, Lebrun Marc-Henri, Tharreau Didier. 2005. In : Société française de phytopathologie, VIème congrés, 23-24-25 février 2005, Toulouse : programme et résumés des communications. SFP, INRA, CNRS, ENSAT-INP, UPS, IFR FR40. Paris : Société française de phytopathologie, Résumé, 1 p. Congrès de la Société française de phytopathologie. 6, Toulouse, France, 23 Février 2005/25 Février 2005.

Epidemiology of peste des petits ruminants virus in Ethiopia and molecular studies on virulence. Gopilo Abraham. 2005. Toulouse : INPT, 173 p. Thèse de doctorat : Science vétérinaires : Institut national polytechnique de Toulouse

Isolement et étude moléculaire de souches des virus de la clavelée et de l'ecthyma contagieux en Tunisie. Fakhfakh Emna, Le Goff Christian, Albina Emmanuel, Zekri S., Seghaier Chédia, Odisseev C., Jaafoura M.H., Hammami Salah. 2005. Revue d'Elevage et de Médecine Vétérinaire des Pays Tropicaux, 58 (1-2) : 7-14.

Molecular variability analysis of five new complete cacao swollen shoot virus genomic sequences. Muller Emmanuelle, Sackey Sammy. 2005. Archives of Virology, 150 (1) : 53-66.

Novel vip3-related protein from Bacillus thuringiensis. Rang Cécile, Gil Patricia, Neisner Nathalie, Van Rie Jeroen, Frutos Roger. 2005. Applied and Environmental Microbiology, 71 (10) : 6276-6281.

Phylogenetic and functional analysis of the WRKY gene family in rice. Berri Stefano, Bily A., Faivre-Rampant Odile, Guiderdoni Emmanuel, Piffanelli Pietro. 2005. In : Société française de phytopathologie, VIème congrés, 23-24-25 février 2005, Toulouse : programme et résumés des communications. SFP, INRA, CNRS, ENSAT-INP, UPS, IFR FR40. Paris : Société française de phytopathologie, Résumé, 1 p. Congrès de la Société française de phytopathologie. 6, Toulouse, France, 23 Février 2005/25 Février 2005.

Rapport d'activités 2004. Etude géonomique de l'interaction Hevea - Microcyclus ulei : mise en place d'une collaboration avec l'Université de Santa Cruz (Bahia). Garcia Dominique. 2005. Montpellier : CIRAD, 23 p. N° de rapport : CP_SIC 1803

Sequence of msp1[alpha] gene of Anaplasma marginale Havana isolate and expression in eukaryotic cells. Corona Belkis, Minet Cécile, Albina Emmanuel, Véga A., Martinez S.. 2005. Spanish Journal of Agricultural Research, 3 (3) : 275-280.

South West Indian Ocean islands tomato begomovirus populations represent a new major monopartite begomovirus group. Delatte Hélène, Martin Darren Patrick, Naze Florence, Goldbach Rob, Reynaud Bernard, Peterschmitt Michel, Lett Jean-Michel. 2005. Journal of General Virology, 86 (5) : 1533-1542.

Spatial control of transgene expression in rice (Oryza sativa L.) using the GAL4 enhancer trapping system. Johnson Alexander, Hibberd Jullian, Gay Céline, Essah Pauline A., Haseloff Jim, Tester Mark, Guiderdoni Emmanuel. 2005. Plant Journal, 41 (5) : 779-789.

Transposition of MINE, a composite retrotransposon, in the avirulence gene ACE1 of the rice blast fungus Magnaporthe grisea. Fudal Isabelle, Böhnert Heidi U., Tharreau Didier, Lebrun Marc-Henri. 2005. Fungal Genetics and Biology, 42 (9) : 761-772.

Web accessible tropical crop databases. Ruiz Manuel, Droc Gaëtan, Larmande Pierre, Perin Christophe, Rouard Mathieu, Courtois Brigitte. 2005. In : Abstracts of Plant and Animal Genomes XIIIth Conference, San Diego, CA (USA), January 15-19, 2005. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 13, San Diego, États-Unis, 15 Janvier 2005/19 Janvier 2005.

The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number. Collins Nicola E., Liebenberg Junita, De Villiers Etienne P., Brayton Kelly A., Louw Elmarié, Pretorius Alri, Faber F. Erika, Van Heerden Henriette, Josemans Antoinette, Van Kleef Mirinda, Steyn Helena C., Van Strijp M. Fransie, Zweygarth Erich, Jongejan Frans, Maillard Jean-Charles, Berthier David, et al.. 2005. Proceedings of the National Academy of Sciences of the United States of America, 102 (3) : 838-843.

A step towards association studies for amylose and protein contents in sorghum. De Alencar Figueiredo Lucio Flavio, Courtois Brigitte, Deu Monique, Rami Jean-François, Fliedel Geneviève, Mestres Christian, Davrieux Fabrice, Chantereau Jacques, Garsmeur Olivier, Grabulos Joël, Fallet Véronique, Glaszmann Jean-Christophe. 2005. In : Abstracts of Plant and Animal Genomes XIIIth Conference, San Diego, CA (USA), January 15-19, 2005. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 13, San Diego, États-Unis, 15 Janvier 2005/19 Janvier 2005.

Isolation and characterization of polymorphic microsatellite markers in Zabrotes subfasciatus Boheman (Coleoptera: Bruchidae). Aebi A., Shani T., Butcher R.D.J., Alvarez N., Risterucci Ange-Marie, Benrey B.. 2004. Molecular Ecology Notes, 4 (4) : 752-754.

Microsatellite markers in a complex of Horismenus sp. (Hymenoptera: Eulophidae), parasitoids of bruchid beetles. Aebi A., Alvarez N., Butcher R.D.J., Hansson Christer, Risterucci Ange-Marie, Benrey B.. 2004. Molecular Ecology Notes, 4 (4) : 707-709.

Molecular analysis of banana streak virus integrants in the nuclear genome of Musa balbisiana. Piffanelli Pietro, Noa-Carrazana Juan Carlos, Benabdelmouna Abdellah, Matsumoto Takashi, Silva-Rosales Laura, Lheureux Fabrice, Teycheney Pierre-Yves, Geering Andrew D., D'Hont Angélique, Frison Emile A., Roux Nicolas, Côte François-Xavier, Glaszmann Jean-Christophe, Sasaki Takuji, Caruana Marie-Line. 2004. In : First International congress on Musa: harnessing research for improved livelihoods, 6-9 July 2004, Penang, Malaysia. Abstract guide. Picq Claudine (ed.), Vézina Anne (ed.). INIBAP, MARDI, BAPNET, University of Malaya, University of Putra, IPGRI. Montpellier : INIBAP, Résumé, 36. International Congress on Musa: Harnessing Research for Improved Livelihoods. 1, Penang, Malaisie, 6 Juillet 2004/9 Juillet 2004.

Molecular characterisation of an unidentifiel Flexivirus. Teycheney Pierre-Yves, Marais Armelle, Svanella-Dumas Laurence, Candresse Thierry. 2004. In : First International congress on Musa: harnessing research for improved livelihoods, 6-9 July 2004, Penang, Malaysia. Abstract guide. Picq Claudine (ed.), Vézina Anne (ed.). INIBAP, MARDI, BAPNET, University of Malaya, University of Putra, IPGRI. Montpellier : INIBAP, Résumé, 40. International Congress on Musa: Harnessing Research for Improved Livelihoods. 1, Penang, Malaisie, 6 Juillet 2004/9 Juillet 2004.

Molecular identification of Diadegma species (Ichneumonidae) parasitising diamondback moth Plutella xylostella (Plutellidae) in Eastern and Southern Africa. Wagener B., Löhr Bernhard, Reineke A., Zebitz C.P.W.. 2004. In : Improving biocontrol of Plutella xylostella : Proceedings of the International Symposium, Montpellier, France, 21-24 October 2002. Kirk Alan A. (ed.), Bordat Dominique (ed.). CIRAD, USDA-ARS. Montpellier : CIRAD, 252-256. ISBN 2-87614-570-7 International Symposium Improving Biocontrol of Plutella xylostella, Montpellier, France, 21 Octobre 2002/24 Octobre 2002.

Molecular variability of banana mild mosaic virus. Teycheney Pierre-Yves, Laboureau Nathalie, Caruana Marie-Line, Candresse Thierry. 2004. In : First International congress on Musa: harnessing research for improved livelihoods, 6-9 July 2004, Penang, Malaysia. Abstract guide. Picq Claudine (ed.), Vézina Anne (ed.). INIBAP, MARDI, BAPNET, University of Malaya, University of Putra, IPGRI. Montpellier : INIBAP, Résumé, 39. International Congress on Musa: Harnessing Research for Improved Livelihoods. 1, Penang, Malaisie, 6 Juillet 2004/9 Juillet 2004.

Nuclear microsatellite markers for the date palm (Phoenix dactylifera L.) : Characterization and utility across the genus Phoenix and in other palm genera. Billotte Norbert, Marseillac Nicolas, Brottier Philippe, Noyer Jean-Louis, Jacquemoud-Collet Jean-Pierre, Moreau C., Couvreur Thomas, Chevallier Marie-Hélène, Pintaud Jean-Christophe, Risterucci Ange-Marie. 2004. Molecular Ecology Notes, 4 (2) : 256-258.

Understanting the Theobroma cacao - Crinipellis perniciosa interaction using ESTs and proteomic analyses. Da Silva Gesteira Abelmon, Micheli Fabienne, Gramacho Karina Peres, Cerqueira Alvim Fatima, Priminho Pirovani Carlos, Leal Pires Acassia Benjamin, Mariano Andréa Cristina, Carels Nicolas, Pires José Luis, Vincentz Michel, Pereira G., Cascardo Julio Cezar M.. 2004. Ingenic newsletter (9) : 27-32.

A barley cultivation-associated polymorphism conveys resistance to powdery mildew. Piffanelli Pietro, Ramsay Luke, Waugh Robbe, Benabdelmouna Abdellah, D'Hont Angélique, Hollricher Karin, Jorgensen Jorgen Helms, Schuize-Lefert Paul, Panstruga Ralph. 2004. Nature, 430 (7002) : 887-891.

A new set of microsatellite markers for the peach palm (Bactris gasipaes Kunth); characterization and across-taxa utility within the tribe Cocoeae. Billotte Norbert, Couvreur Thomas, Marseillac Nicolas, Brottier Philippe, Perthuis Bernard, Vallejo M., Noyer Jean-Louis, Jacquemoud-Collet Jean-Pierre, Risterucci Ange-Marie, Pintaud Jean-Christophe. 2004. Molecular Ecology Notes, 4 (4) : 580-582.

A new tomato leaf curl virus from Mayotte. Lett Jean-Michel, Delatte Hélène, Naze Florence, Reynaud Bernard, Abdoul-Karime Anli Liachouroutu, Peterschmitt Michel. 2004. Plant Disease, 88 (6) : 681.

Analysing the genomic distribution of sequence diversity, the new challenge for germplasm characterisation [B-47]. Glaszmann Jean-Christophe, Deu Monique. 2003. In : 7th International Congress of Plant Molecular Biology, ISPMB 2003, Barcelona (Spain), June 23-28. Book of abstracts. ISPMB. Barcelone : ISPMB Office, Résumé, 22. International Congress of Plant Molecular Biology. 7, Barcelone, Espagne, 23 Juin 2003/28 Juin 2003.

Anaplasmose bovine. Camus Emmanuel, Uilenberg Gerrit. 2003. In : Principales maladies infectieuses et parasitaires du bétail. Europe et régions chaudes. Maladies bactériennes, mycoses, maladies parasitaires. Lefèvre Pierre-Charles, Blancou Jean, Chermette René. Paris : Lavoisier Tec et Doc, 1099-1107. ISBN 2-7430-0495-9

Bases genéticas da resistência do cacaueiro à doença de vassoura da bruxa (Crinipellis perniciosa) : [2001-02]. Micheli Fabienne. 2003. In : O Cirad no Brasil : relatorio de atividades 2001-2002. Hainzelin Etienne (ed.). CIRAD. Brasilia : CIRAD, 22-23.

Bases génétiques de la résistance du cacaoyer à la maladie du balai de sorcière (Crinipellis perniciosa) : [2001-02]. Micheli Fabienne. 2003. In : Le Cirad au Brésil : rapport d'activités 2001-2002. Hainzelin Etienne (ed.). CIRAD. Brasilia : CIRAD, 22-23.

Biochemical and molecular markers. Grivet Laurent, Noyer Jean-Louis. 2003. In : Genetic diversity of cultivated tropical plants. Hamon Perla (ed.), Seguin Marc (ed.), Perrier Xavier (ed.), Glaszmann Jean-Christophe (ed.). Montpellier : CIRAD, 1-29. ISBN 1-57808-264-1

Characterisation of oil palm (Elaeis guineensis Jacq.) mads box genes [S20-48]. Adam Hélène, Morcillo Fabienne, Tregear James. 2003. In : 7th International Congress of Plant Molecular Biology, ISPMB 2003, Barcelona (Spain), June 23-28. Book of abstracts. ISPMB. Barcelone : ISPMB Office, Résumé, 280. International Congress of Plant Molecular Biology. 7, Barcelone, Espagne, 23 Juin 2003/28 Juin 2003.

Characterization of Phythophthora species from the American continent and the Caribbean that are pathogenic on cocoa. Herail Claude, Vezian Katia, Ducamp Michel. 2003. In : 14th International Cocoa Research Conference, 13-18 October 2003, Accra, Ghana. Montpellier : Cirad, 1 p. Conférence Internationale sur la Recherche Cacaoyère. 14, Accra, Ghana, 13 Octobre 2003/18 Octobre 2003.

Detection, diversity and integration of yam badnaviruses. Seal Sue E., Kenyon Lawrence, Lebas Bénédicte, Muller Emmanuelle, Caruana Marie-Line, Marchand Jean-Leu. 2003. In : Advances in plant virology : A three day International conference at CIRAD, Montpellier, France on 29 September - 1 October 2003. AAB, CIRAD-AMIS, INRA, ENSAM, IRD. Warwick : AAB, Résumé, 1 p. International Conference : Advances in Plant Virology, Montpellier, France, 29 Septembre 2003/1 Octobre 2003.

Development of single tagged microsatellite sequence (STMS) for networking management of citrus germplasm [S29-24]. Froelicher Yann, Dambier Dominique, Luro François, Costantino Gilles, Lotfy Samia, Didout Christophe, Beaumont Vincent, Brottier Philippe, Risterucci Ange-Marie, Ollitrault Patrick. 2003. In : 7th International Congress of Plant Molecular Biology, ISPMB 2003, Barcelona (Spain), June 23-28. Book of abstracts. ISPMB. Barcelone : ISPMB Office, Résumé, 411. International Congress of Plant Molecular Biology. 7, Barcelone, Espagne, 23 Juin 2003/28 Juin 2003.

Exploration du génome de la canne à sucre par séquençage EST : [2001-02]. Grivet Laurent, D'Hont Angélique. 2003. In : Le Cirad au Brésil : rapport d'activités 2001-2002. Hainzelin Etienne (ed.). CIRAD. Brasilia : CIRAD, 16-17.

Exploração do genoma da cana-de-açucar por seqüenciamento EST : [2001-02]. Grivet Laurent, D'Hont Angélique. 2003. In : O Cirad no Brasil : relatorio de atividades 2001-2002. Hainzelin Etienne (ed.). CIRAD. Brasilia : CIRAD, 16-17.

Four new full sequences of cacao swollen shoot virus: A PCR full length cloning strategy and a variability analysis. Muller Emmanuelle, Sackey Sammy. 2003. In : Advances in plant virology : A three day International conference at CIRAD, Montpellier, France on 29 September - 1 October 2003. AAB, CIRAD-AMIS, INRA, ENSAM, IRD. Warwick : AAB, Résumé, 1 p. International Conference : Advances in Plant Virology, Montpellier, France, 29 Septembre 2003/1 Octobre 2003.

Functional analysis of promoter sequences from Hevea brasiliensis hevein genes, in rice and rubber tree [S05-32]. Pujade-Renaud Valérie, Arokiaraj P., Jones Heddwyn, Sanier Christine, Cambillau Laurence, Tharreau Didier, Narangajavana Jarunya, Chrestin Hervé. 2003. In : 7th International Congress of Plant Molecular Biology, ISPMB 2003, Barcelona (Spain), June 23-28. Book of abstracts. ISPMB. Barcelone : ISPMB Office, Résumé, 78. International Congress of Plant Molecular Biology. 7, Barcelone, Espagne, 23 Juin 2003/28 Juin 2003.

Genome distribution and characterization of EST derived sugarcane resistance gene analogs. Rossi Magdalena, Araujo Paula G., Paulet Florence, Garsmeur Olivier, Dias Viviane M., Chen Hui, Van Sluys Marie-Anne, D'Hont Angélique. 2003. In : IVth Molecular biology workshop, Montpellier, France, 7-11 April 2003 [Abstracts]. ISSCT, Languedoc-Roussillon-Conseil régional, CIRAD-CA. Montpellier : CIRAD-CA, Résumé, 9. Molecular Biology Workshop. 4, Montpellier, France, 7 Avril 2003/11 Avril 2003.

Host specificity of mollicutes oriC plasmids : functional analysis of replication origin. Lartigue Carole, Renaudin Joël, Blanchard Alain, Thiaucourt François, Sirand-Pugnet Pascal. 2003. Nucleic Acids Research, 31 (22) : 6610-6618.

Identification and fine mapping of Pi33, the rice resistance gene corresponding to the magnaporthe grisea avirulence gene ACE1. Berruyer Romain, Adreit Henri, Milazzo Joëlle, Gaillard Sylvain, Berger Angélique, Dioh Waly, Lebrun Marc-Henri, Tharreau Didier. 2003. Theoretical and Applied Genetics, 107 : 1139-1147.

Identification of genetic markers linked to banana streak disease expression in inter-specific Musa hybrids. Lheureux Fabrice, Carreel Françoise, Jenny Christophe, Lockhart Benham E.L., Iskra Caruana Marie-Line. 2003. Theoretical and Applied Genetics, 106 (4) : 594-598.

Integration patterns of Banana streak virus into banana nuclear genome [S25-10]. Noa-Carrazana Juan Carlos, Vilarinhos Alberto Duarte, Caruana Marie-Line, Lheureux Fabrice, Teycheney Pierre-Yves, Sabau Xavier, Glaszmann Jean-Christophe, Dolezel Jaroslav, Piffanelli Pietro. 2003. In : 7th International Congress of Plant Molecular Biology, ISPMB 2003, Barcelona (Spain), June 23-28. Book of abstracts. ISPMB. Barcelone : ISPMB Office, Résumé, 361. International Congress of Plant Molecular Biology. 7, Barcelone, Espagne, 23 Juin 2003/28 Juin 2003.

Les séquences pararétrovirales endogènes des plantes : nouvelle voie d'émergence du virus de mosaïque en tirets des bananiers. Iskra Caruana Marie-Line, Lheureux Fabrice, Dallot Sylvie. 2003. In : 5ème Journées francophones de virologie, 10-11 avril 2003, Paris. s.l. : s.n., Résumé, 1 p. Journées francophones de virologie. 5, Paris, France, 10 Avril 2003/11 Avril 2003.

Rice and reverse genetics as tools to study disease resistance in cereals. Morel J.B., Alidor S., Arnal Didier, Atoui N., Chalvon Véronique, Gaillard Sylvain, Loussert C., Morisset F., Vergne Emilie, Lebrun Marc-Henri, Tharreau Didier, Nottéghem Jean-Loup. 2003. In : IVth Molecular biology workshop, Montpellier, France, 7-11 April 2003 [Abstracts]. ISSCT, Languedoc-Roussillon-Conseil régional, CIRAD-CA. Montpellier : CIRAD-CA, Résumé, 8. Molecular Biology Workshop. 4, Montpellier, France, 7 Avril 2003/11 Avril 2003.

Sequence analysis, transcriptional and posttranscriptional regulation of the rice VDAC family. Al Bitar Fawaz, Roosens Nancy, Smeyers Mathias, Vauterin Marc, Van Boxtel Jos, Jacobs Michel, Homblé Fabrice. 2003. Biochimica and Biophysica Acta, N. Gene structure and Expression, 1625 : 43-51.

Study on the diversity of phytoplasma associated with lethal yellowing. Myrie Wayne, Dollet Michel, McLauglin W., Been Basil. 2003. In : Pan American Plant disease Conference : 42nd Annual meeting on the American Phytopapthological Society-Caribbean Division, South Padre Island, Texas, U.S.A, April 6-10, 2003. s.l. : s.n., Résumé, 1. Annual Meeting of the American Phytopathological Society. 42, South Padre Island, États-Unis, 6 Avril 2003/10 Avril 2003.

Unstable balance of relation between parretrovirus and its host plant : the BSV-EPRV banana pathosystem. Iskra Caruana Marie-Line, Lheureux Fabrice, Noa-Carrazana Juan Carlos, Piffanelli Pietro, Carreel Françoise, Jenny Christophe, Laboureau Nathalie, Lockhart Benham E.L.. 2003. In : Abstracts : EMBO Workshop Genomic Approaches in Plant Virology, May 28-31, 2003, Keszthely, Hungary. s.l. : s.n., Résumé, 8. EMBO Workshop Genomic Approaches in Plant Virology, Keszthely, Hongrie, 28 Mai 2003/31 Mai 2003.

Variabilité du virus du Swollen shoot (CSSV): clonage et analyse de quatre nouvelles séquences entières. Muller Emmanuelle, Sackey Sammy. 2003. In : 9ème Rencontres de virologie végétale, 2 au 6 février 2006, Aussois. Pierre Yot ; CNRS. Strasbourg : CNRS, Résumé, 17. Rencontres de virologie végétale. 9, Aussois, France, 2 Février 2003/6 Février 2003.

The development of simple sequence repeat (SSR) markers for Magnaporthe grisae and their integration into an established genetic linkage map. Kaye Claudia, Milazzo Joëlle, Rozenfeld Sophie, Lebrun Marc-Henri, Tharreau Didier. 2003. Fungal Genetics and Biology, 40 (3) : 207-214.

Bovine NRAMPI gene promoter sequence and polymorphism. Zanotti M., Scotti R., Strillacci M.G., Longeri M.. 2002. In : Second international symposium on Candidate Genes for Animal Health (C.G.A.H), Montpellier, France, August 16-18th 2002 : abstracts. CIRAD, INRA. Montpellier : CIRAD, Résumé, 1 p. International Symposium on Candidate Genes for Animal Health. 2, Montpellier, France, 16 Août 2002/18 Août 2002.

Endogenous Banana streak virus sequences in Musa genome : a new risk for breeding program. Lheureux Fabrice, Carreel Françoise, Jenny Christophe, Laboureau Nathalie, Lockhart Benham E.L., Iskra Caruana Marie-Line. 2002. In : The world of microbes : XIIth International Congress of Virology, Paris, 27th July to 1st August 2002. SFM, IUMS. Paris : EDK, Résumé, 227. International Congress of Virology. 11, Paris, France, 27 Juillet 2002/1 Août 2002.

Identification génétique de quatre régions génomiques impliquées dans les interactions spécifique entre Leptosphaeria maculans et ses hôtes, Brassica napus, B. juncea et B. rapa. Balesdent Marie-Hélène, Attard Agnès, Khün Marie-Line, Rouxel Thierry. 2002. In : Journées Jean Chevaugeon : IVe rencontres de phytopathologie - mycologie du 13 au 17 mars 2002. [Résumés]. CIRAD-MIDEC, INRA, CNRS, SFP. Montpellier : CIRAD, Résumé, 1 p. Journées Jean Chevaugeon, Rencontres de phytopathologie-mycologie. 4, Aussois, France, 13 Mars 2002/17 Mars 2002.

Microsatellite primer amplication by multiplexing: a first application to Eucalyptus grandis. Chaix Gilles, Chantal Isabelle, Poitel Mireille, Razafiarivelo Sylvie, Verhaegen Daniel, Maillard Jean-Charles. 2002. Plant Molecular Biology Reporter, 20 (1), 67a-67e

The development of simple sequence repeat (SSR) markers for Magnaporthe grisae and their integration into an established molecular linkage map : P n. 5. Kaye Claudia, Milazzo Joëlle, Mongkolsamrit Suchada, Sirithunya Pattama, Lebrun Marc-Henri, Tharreau Didier. 2002. In : Journées Jean Chevaugeon : IVe rencontres de phytopathologie - mycologie du 13 au 17 mars 2002. [Résumés]. CIRAD-MIDEC, INRA, CNRS, SFP. Montpellier : CIRAD, 1 p. Journées Jean Chevaugeon, Rencontres de phytopathologie-mycologie. 4, Aussois, France, 13 Mars 2002/17 Mars 2002.

A species-specific satellite DNA family in the genome of the coffee root-knot nematode Meloidogyne exigua : Application to molecular diagnostics of the parasite. Randig Onivaldo, Bongiovanni Michel, Carneiro Regina Maria Dechechi Gomes, Sarah Jean-Louis, Castagnone Sereno Philippe. 2002. Molecular Plant Pathology, 3 (6) : 431-437.

Biological, serological and molecular characterization of ornamental CTV isolates from Corsica. Guzman M., Vernière Christian, Niblett C., Bové Joseph M.. 2001. In : Conference of the International Organization of Citrus Virologist, Pathos, Chypre, 11-16 novembre 2001. IOCV. s.l. : s.n., Résumé, 1 p. Conference of the International Organization of Citrus Virologists. 15, Paphos, Chypre, 11 Novembre 2001/16 Novembre 2001.

Diversité génétique du sugarcane mosaic virus (SCMV) au Congo et au Cameroun. Alegria O.M., Royer Monique, Bousalem M., Chatenet Michèle, Peterschmitt Michel, Girard Jean-Claude, Rott Philippe. 2001. In : Huitièmes rencontres de virologie végétale. Aussois (Savoie), 11-15 mars 2001 : résumés. Yot Pierre, Gilmer David. CNRS. Strasbourg : CNRS, 24. Rencontres de virologie végétale. 8, Aussois, France, 11 Mars 2001/15 Mars 2001.

Epidémiologie moléculaire de la maladie des taches noires du manguier : Intérêt de l'IS1595 en tant qu'outil de typage. Pruvost Olivier, Gagnevin Lionel, Glories Véronique, Couteau Annie, Mete K.. 2001. In : 5e Congrès de la Société Française de Phytopathologie, Angers (France), 26 - 29 mars 2001. Programme et résumés des communications,. SFP. Angers : INRA, Résumé, 1 p. Congrès de la Société Française de Phytopathologie. 5, Angers, France, 26 Mars 2001/29 Mars 2001.

Exploration du génome de la canne à sucre par séquençage d'EST. Grivet Laurent. 2001. In : Le Cirad au Brésil : rapport d'activités 2000. CIRAD. Brasilia : CIRAD, 18-19.

Exploração do genoma da cana-de-açucar por sequenciamento d'EST. Grivet Laurent. 2001. In : O Cirad no Brasil : relatorio de atividades 2000. CIRAD. Brasilia : CIRAD, 18-19.

Identification and molecular structural prediction analysis of a toxicity determinant in the Bacillus sphaericus crystal larvicidal toxin. Yuan Zhiming, Rang Cécile, Maroun Rachid C., Juarez-Perez Victor-Manuel, Frutos Roger, Pasteur Nicole, Vendrely Charlotte, Charles Jean François, Nielsen Leroux Christina. 2001. European Journal of Biochemistry, 268 : 2751-2760.

La génomique appliquée aux caractères agronomiques. Glaszmann Jean-Christophe. 2001. In : Ressources génétiques, géonomique, biotechnologies végétales = Genetic resources, genomics, plant biotechnology. Charrier André (ed.), De Nucé De Lamothe Michel (ed.). Agropolis. Montpellier : Agropolis International, 8. (Les dossiers d'Agropolis International, 1)

Préparation au séquencage du chromosome 12 du riz. Regad Farid, Salses J., Cooke Richard, Presting Gernot, Lagoda Pierre, Delseny Michel. 2001. In : Des modèles biologiques à l'amélioration des plantes. Hamon Serge (ed.). AUF. Paris : IRD, 580. (Colloques et séminaires / IRD) ISBN 2-7099-1472-7 Journées scientifiques du réseau AUF "Biotechnologies végétales : amélioration des plantes et sécurité alimentaire". 7, Montpellier, France, 3 Juillet 2000/5 Juillet 2000.

Regulation of 7S globulin gene expression in zygotic and somatic embryos of oil palm. Morcillo Fabienne, Hartmann Caroline, Duval Yves, Tregear James. 2001. Physiologia Plantarum, 112 (2) : 233-243.

Rice genomics: Present and future. Delseny Michel, Salses J., Cooke Richard, Sallaud Christophe, Regad Farid, Lagoda Pierre, Guiderdoni Emmanuel, Ventelon M., Brugidou Christophe, Ghesquière Alain. 2001. Plant Physiology and Biochemistry, 39 : 323-334.

A direct comparison between the genetic maps of sorghum and rice. Ventelon M., Deu Monique, Garsmeur Olivier, Doligez Agnès, Ghesquière Alain, Lorieux Mathias, Rami Jean-François, Glaszmann Jean-Christophe, Grivet Laurent. 2001. Theoretical and Applied Genetics, 102 : 379-386.

Interest of the insertion sequence IS1595 as a population typing tool for Xanthomonas pv. mangiferaeindicae. Gagnevin Lionel, Glories Véronique, Couteau Annie, Mete K., Gout L., Pruvost Olivier. 2000. In : Biodiversity in plant pathology. Book of abstracts : 5th Congress of the European Foundation for Plant Pathology, Italy, 18-22 september 2000, EFPP. s.l. : s.n., 37. European Foundation for Plant Pathology Congress. 5, Taormina - Giardini Naxos, Italie, 18 Septembre 2000/22 Septembre 2000.

Les puces à ADN : outils pour une nouvelle vision de la diversité et des ressources génétiques. Lagoda Pierre, Regad Farid. 2000. Cahiers Agricultures, 9 (4) : 329-340.

Molecular epidemiology of contagious caprine pleuropneumonia by DNA sequencing. Lorenzon Sophie, David Armelle, Thiaucourt François. 2000. In : 7ème conférence internationale sur les caprins : recueil des communications = 7th international conference on goats : Proceedings. Gruner L. (ed.), Chabert Y. (ed.). Institut de l'élevage, International Goat Association, INRA. Paris : Institut de l'elevage, 860-861. ISBN 2-8414-8039-9 Conférence internationale sur les caprins. 7, Tours, France, 15 Mai 2000/21 Mai 2000.

Phylogeny within the "Mycoides cluster" as shown by a 298 BP long intergenic sequence. Thiaucourt François, Lorenzon Sophie, David Armelle, Bréard Alain. 2000. In : 7ème conférence internationale sur les caprins : recueil des communications = 7th international conference on goats : Proceedings. Gruner L. (ed.), Chabert Y. (ed.). Institut de l'élevage, International Goat Association, INRA. Paris : Institut de l'elevage, 293. ISBN 2-8414-8039-9 Conférence internationale sur les caprins. 7, Tours, France, 15 Mai 2000/21 Mai 2000.

Screening for species-specific DNA families in Musa acuminata. Baurens Franc-Christophe, Noyer Jean-Louis, Lanaud Claire, Lagoda Pierre. 2000. Fruits, 55 (1) : 3-15.

Séquençage génomique et comparatif du riz. Lagoda Pierre. 2000. In : IXèmes Entretiens d'Agropolis : apport des outils biotechnologiques à l'amélioration variétale des plantes méditerranéennes et tropicales. Lundi 22 mai 2000, Montpellier. Agropolis. Montpellier : Agropolis, Résumé, 20. Entretiens d'Agropolis : Apport des outils biotechnologiques à l'amélioration variétale des plantes méditerranéennes et tropicales. 9, Montpellier, France, 22 Mai 2000.

The interspecific genome structure of cultivated banana, Musa sp. revealed by genomic DNA in situ hybridization. D'Hont Angélique, Paget Goy A., Escoute Jacques, Carreel Françoise. 2000. Theoretical and Applied Genetics, 100 : 177-183.

Analyse moléculaire et cellulaire des mécanismes de transmission du maize streak virus par Cicadulina mbila. Lett Jean-Michel, Granier Martine, Grondin Martial, Escoute Jacques, Reynaud Bernard, Peterschmitt Michel. 1999. In : LPRC. Rapport d'activités 1996-1998. Fargette Denis (ed.), Peterschmitt Michel (ed.), Ferrer M. (ed.). CIRAD-LPRC, CIRAD-AMIS. Montpellier : CIRAD, 31-32.

Banques enrichies en microsatellite : méthode pour isoler des marqueurs SSR dans les productions tropicales. Billotte Norbert, Lagoda Pierre, Risterucci Ange-Marie, Baurens Franc-Christophe. 1999. Fruits, 54 (4) : 277-288.

Biochemical and molecular characterization and expression of the 11S-type storage protein from Coffea arabica endosperm. Rogers William John, Bezard Vincent, Deshayes Alain, Meyer Inge, Pétiard Vincent, Marraccini Pierre. 1999. Plant Physiology and Biochemistry, 37 (4) : 261-272.

Caractérisation moléculaire d'un virus infectant le maïs en Egypte : le maize yellow stripe virus. Mahmoud A., Royer Monique, Thouvenel J.C., Peterschmitt Michel. 1999. In : LPRC. Rapport d'activités 1996-1998. Fargette Denis (ed.), Peterschmitt Michel (ed.), Ferrer M. (ed.). CIRAD-LPRC, CIRAD-AMIS. Montpellier : CIRAD, 33-35.

Characterization of 18 new BoLA-DRB3 alleles. Maillard Jean-Charles, Renard C., Chardon P., Chantal Isabelle, Bensaïd Albert. 1999. Animal Genetics, 30 : 200-203.

Development of microsatellite enriched libraries in several tropical species. Gay Céline, Rodier-Goud Marguerite, Kaye Claudia, Pieretti Isabelle, Billotte Norbert, Baurens Franc-Christophe, Lebrun Patricia, Seguin Marc, D'Hont Angélique, Glaszmann Jean-Christophe, Risterucci Ange-Marie. 1999. In : International Plant and Animal Genome Conference. 7. Montpellier : CIRAD-CP, 1 p. Plant and Animal Genomes Conference. 7, San Diego, États-Unis, 17 Janvier 1999/21 Janvier 1999.

Development of microsatellite enriched libraries in several tropical species. Gay Céline, Rodier-Goud Marguerite, Kaye Claudia, Pieretti Isabelle, Billotte Norbert, Baurens Franc-Christophe, Lebrun Patricia, Seguin Marc, D'Hont Angélique, Glaszmann Jean-Christophe, Risterucci Ange-Marie. 1999. In : The international conference on the status of plant and animal genome research : final program and abstracts guide = [Conférence internationale sur l'état de la recherche du génome des plantes et des animaux : programme final et résumés]. Shearago Internat. New York : Scherago International, Résumé, 197. Plant and Animal Genomes Conference. 7, San Diego, États-Unis, 17 Janvier 1999/21 Janvier 1999.

Etiologie de la maladie des énations de l'Althea en Egypte. Bigarré Laurent, Peterschmitt Michel, Thouvenel J.C.. 1999. In : LPRC. Rapport d'activités 1996-1998. Fargette Denis (ed.), Peterschmitt Michel (ed.), Ferrer M. (ed.). CIRAD-LPRC, CIRAD-AMIS. Montpellier : CIRAD, 23-24.

Evaluation de la variabilité moléculaire du YMV. Bousalem M., Fargette Denis, Dubern J., Pinel A., Aribi Jamel. 1999. In : LPRC. Rapport d'activités 1996-1998. Fargette Denis (ed.), Peterschmitt Michel (ed.), Ferrer M. (ed.). CIRAD-LPRC, CIRAD-AMIS. Montpellier : CIRAD, 42-52.

First report of tomato yellow leaf curl Geminivirus in Morocco. Peterschmitt Michel, Granier Martine, Aboulama S.. 1999. Plant Disease, 83 (11) : 1074.

First report of tomato yellow leaf curl virus in Réunion Island. Peterschmitt Michel, Granier Martine, Mekdoud R., Dalmon Anne, Gambin Olivier, Vayssières Jean-François, Reynaud Bernard. 1999. Plant Disease, 83 (3) : 303.

Inter-Alu-like species-specific sequences in the Saccharum complex. Alix Karine, Paulet Florence, Glaszmann Jean-Christophe, D'Hont Angélique. 1999. Theoretical and Applied Genetics, 99 : 962-968.

La maladie de la mosaïque des bractées des bananiers. Caruana Marie-Line, Galzi Serge, Laboureau Nathalie, Bousalem M., Royer Monique, Frutos Roger. 1999. In : LPRC. Rapport d'activités 1996-1998. Fargette Denis (ed.), Peterschmitt Michel (ed.), Ferrer M. (ed.). CIRAD-LPRC, CIRAD-AMIS. Montpellier : CIRAD, 39-42.

Les méthodes de marquage biochimique et moléculaire. Grivet Laurent, Noyer Jean-Louis. 1999. In : Diversité génétique des plantes tropicales cultivées = Genetic diversity of cultivated tropical plants. Hamon Perla (ed.), Seguin Marc (ed.), Perrier Xavier (ed.), Glaszmann Jean-Christophe (ed.). Montpellier : CIRAD, 13-41. ISBN 2-87614-344-8

Molecular cloning of the complete 11S seed storage protein gene of Coffea arabica and promoter analysis in transgenic tobacco plants. Marraccini Pierre, Deshayes Alain, Pétiard Vincent, Rogers William John. 1999. Plant Physiology and Biochemistry, 37 (4) : 273-282.

Nucleotide sequence evidence for three distinct sugarcane streak mastreviruses. Bigarré Laurent, Salah M., Granier Martine, Frutos Roger, Thouvenel J.C., Peterschmitt Michel. 1999. Archives of Virology, 144 : 2331-2344.

The matrix protein gene sequence analysis reveals close relationship between peste des petits ruminants virus (PPRV) and dolphin morbillivirus. Haffar Athman, Libeau Geneviève, Moussa A., Minet Cécile, Diallo Adama. 1999. Virus Research, 64 : 69-75.

Detection of the binary toxin genes of several Bacillus sphaericus strains and their toxicities against susceptible and resistant Culex pipiens. Zhiming Y., Nielsen Leroux Christina, Pasteur Nicole, Charles Jean François, Frutos Roger. 1998. Acta Entomologica Sinica, 41 (4) : 12-29.

Detection of the binary toxin genes of several Bacillus sphaericus strains and their toxicities against susceptible and resistant Culex pipiens. Yuan Zhiming, Nielsen Leroux Christina, Pasteur Nicole, Delecluse A., Charles Jean François, Frutos Roger. 1998. In : Meetings program and abstracts = [Programme et résumés des rencontres]/. Bethesda : SIP, 40. International Colloquium on Invertebrate Pathology and Microbial Control. 7, Sapporo, Japon, 23 Août 1998/28 Août 1998.

Diploid Musa acuminata genetic diversity assayed with sequence-tagged microsatellite sites. Grapin Agnès, Noyer Jean-Louis, Carreel Françoise, Dambier Dominique, Baurens Franc-Christophe, Lanaud Claire, Lagoda Pierre. 1998. Electrophoresis (19) : 1374-1380.

Inter-Alu PCR like genomic profiling in banana. Baurens Franc-Christophe, Noyer Jean-Louis, Lanaud Claire, Lagoda Pierre. 1998. Euphytica, 99 (2) : 137-142.

Isolation and characterization of a satellite DNA family in the Saccharum complex. Alix Karine, Baurens Franc-Christophe, Paulet Florence, Glaszmann Jean-Christophe, D'Hont Angélique. 1998. Genome (Ottawa), 41 : 854-864.

Les séquences répétées de la canne à sucre : spécificités génomiques et apport aux programmes d'introgression. Alix Karine. 1998. Rennes : ENSAR, 156 p. Thèse de doctorat : Biologie et agronomie : Ecole nationale supérieure agronomique de Rennes

Molecular and biological studies of a maize streak virus population from Reunion used to assess maize cultivar response to infection. Peterschmitt Michel, Isnard Muriel, Granier Martine, Bedford I., Frutos Roger, Reynaud Bernard, Markham P.. 1998. In : 2nd international workshop on Bemisia and geminiviral diseases. Program and abstracts = [Deuxième séminaire international sur les maladies à Bemisia et gemini virus. Programme et résumés]. Mayer R.T. (ed.), Maxwell D.P. (ed.). s.l. : s.n., 58. International Workshop on Bemisia and Geminiviral Diseases. 2, San Juan, Porto Rico, 7 Juin 1998/12 Juin 1998.

Molecular evolution of Mycoplasma capricolum subsp. capripneumoniae strains, based on polymorphisms in the 16S rRNA genes. Pettersson B., Bölske Göran, Thiaucourt François, Uhlén M., Johansson Karl-Erik. 1998. Journal of Bacteriology, 180 (9) : 2350-2358.

Physical mapping of the 18S-25S and 5S ribosomal RNA genes in diploid bananas. Dolezelova M., Valarik M., Swennen R., Horry Jean-Pierre, Dolezel Jaroslav. 1998. Biologia Plantarum, 41 (4) : 497-505.

Quasispecies nature of three maize streak virus isolates obtained through different modes of selection from a population used to assess response to infection of maize cultivars. Isnard Muriel, Granier Martine, Frutos Roger, Reynaud Bernard, Peterschmitt Michel. 1998. Journal of General Virology, 79 : 3091-3099.

Rapport sur le "US Workshop on rice genome sequencing", 8 avril 1998, Hyatt Regency Cristal Center, Arlington. Lagoda Pierre. 1998. Montpellier : CIRAD-AMIS, 27 p.