RapGreen, an interactive software and web package to explore and analyze phylogenetic trees

Dufayard Jean François, Bocs Stéphanie, Guignon Valentin, Larivière Delphine, Louis Alexandra, Oubda Nicolas, Rouard Mathieu, Ruiz Manuel, De Lamotte Frédéric. 2021. RapGreen, an interactive software and web package to explore and analyze phylogenetic trees. NAR Genomics and Bioinformatics, 3 (3):lqab088, 6 p.

Url - autres données associées : https://github.com/SouthGreenPlatform/rap-green/wiki/Examples-of-installed-services

Résumé : RapGreen is a modular software package targeted at scientists handling large datasets for phylogenetic analysis. Its primary function is the graphical visualization and exploration of large trees. In addition, RapGreen offers a tree pattern search function to seek evolutionary scenarios among large collections of phylogenetic trees. Other functionalities include tree reconciliation with a given species tree: the detection of duplication or loss events during evolution and tree rooting. Last but not least, RapGreen features the ability to integrate heterogeneous data while visualizing and otherwise analyzing phylogenetic trees.

Mots-clés Agrovoc : phylogénie, bioinformatique, application des ordinateurs, traitement des données, phylogénétique

Mots-clés complémentaires : Algorithme

Classification Agris : U60 - Sciences de la vie et de la Terre
U10 - Informatique, mathématiques et statistiques

Champ stratégique Cirad : CTS 1 (2019-) - Biodiversité

Auteurs et affiliations

• Dufayard Jean François, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0002-7427-6822 - auteur correspondant
• Bocs Stéphanie, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0001-7850-4426
• Guignon Valentin, Bioversity International (FRA)
• Larivière Delphine, Montpellier SupAgro (FRA)
• Louis Alexandra, IBENS (FRA)
• Oubda Nicolas, Université de Montpellier (FRA)
• Rouard Mathieu, Bioversity International (FRA)
• Ruiz Manuel, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0001-8153-276X
• De Lamotte Frédéric, INRAE (FRA)

Source : Cirad-Agritrop (https://agritrop.cirad.fr/599620/)

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