Genomicus in 2022: Comparative tools for thousands of genomes and reconstructed ancestors

Nguyen Nga Thi Thuy, Vincens Pierre, Dufayard Jean François, Roest Crollius Hugues, Louis Alexandra. 2022. Genomicus in 2022: Comparative tools for thousands of genomes and reconstructed ancestors. Nucleic Acids Research, 50 (1) : 1025-1031.

https://doi.org/10.1093/nar/gkab1091

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Url - jeu de données - Entrepôt autre : http://www.genomicus.bio.ens.psl.eu/genomicus

Résumé : Genomicus is a database and web-server dedicated to comparative genomics in eukaryotes. Its main functionality is to graphically represent the conservation of genomic blocks between multiple genomes, locally around a specific gene of interest or genome-wide through karyotype comparisons. Since 2010 and its first release, Genomicus has synchronized with 60 Ensembl releases and seen the addition of functions that have expanded the type of analyses that users can perform. Today, five public instances of Genomicus are supporting a total number of 1029 extant genomes and 621 ancestral reconstructions from all eukaryotes kingdoms available in Ensembl and Ensembl Genomes databases complemented with four additional instances specific to taxonomic groups of interest.

Mots-clés Agrovoc : génome, banque de données, génomique comparée, caryotype, bioinformatique, génomique, Eukaryota

Mots-clés géographiques Agrovoc : France

Mots-clés libres : Génomique comparative, Visualisation des données

Classification Agris : U60 - Sciences de la vie et de la Terre
F30 - Génétique et amélioration des plantes
L10 - Génétique et amélioration des animaux

Champ stratégique Cirad : CTS 1 (2019-) - Biodiversité

Agences de financement hors UE : Agence Nationale de la Recherche

Projets sur financement : (FRA) Memory in living systems: an integrated approach, (FRA) Paris Sciences et Lettres

Auteurs et affiliations