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Number of items: 181.

Journal article

Diverse genomoviruses representing twenty-nine species identified associated with plants. Fontenele Rafaela S, Roumagnac Philippe, Richet Cécile, Kraberger Simona, Stainton Daisy, Aleamotu‘a Maketalena, Filloux Denis, Bernardo Pauline, Harkins Gordon William, McCarthy James, Charles Lachlan S., Lamas Natalia S., Abreu Emanuel F. M., Abreu Rayane A., Batista Graciete B., Lacerda Ana L. M., Salywon Andrew M., Wojciechowski Martin, Majure Lucas C., Martin Darren Patrick, Ribeiro Simone G., Lefeuvre Pierre, Varsani Arvind. 2020. Archives of Virology, 165 (12) : pp. 2891-2901.
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Heterogeneity of the rice microbial community of the Chinese centuries-old Honghe Hani rice terraces system. Alonso Pascal, Blondin Laurence, Gladieux Pierre, Mahe Frédéric, Sanguin Hervé, Ferdinand Romain, Filloux Denis, Desmarais Eric, Cerqueira Frédérique, Jin Baihui, Huang Huichuan, He Xiahong, Morel Jean-Benoit, Martin Darren Patrick, Roumagnac Philippe, Vernière Christian. 2020. Environmental Microbiology, 22 (8) : pp. 3429-3445.
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Illuminating an ecological blackbox: Using high throughput sequencing to characterize the plant virome across scales. Maclot François, Candresse Thierry, Filloux Denis, Malmstrom Carolyn M., Roumagnac Philippe, van der Vlugt René, Massart Sébastien. 2020. Frontiers in Microbiology, 11:578064, 16 p.
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Improvements in virus detection at CIRAD's sugarcane quarantine using both viral metagenomics and PCR-Based approaches. Fernandez Emmanuel, Ferdinand Romain, Filloux Denis, Guinet Isabelle, Julian Charlotte, Rott Philippe, Roumagnac Philippe, Daugrois Jean-Heinrich. 2020. Sugar Tech, 22 : pp. 498-503.
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Molecular detection of sugarcane striate virus and sugarcane white streak virus and their prevalence in the Miami World Collection of sugarcane and related grasses. Boukari Wardatou, Filloux Denis, Daugrois Jean-Heinrich, Fernandez Emmanuel, Mollov Dimitre S., Kaye Claudia, Hincapie Martha, Sanchez Alexander, Wang Jianping, Roumagnac Philippe, Rott Philippe. 2020. Plant Pathology, 69 (6) : pp. 1060-1069.
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Molecular viral diagnosis and sanitation of yam genetic resources: Implications for safe yam germplasm exchange. Umber Marie, Filloux Denis, Gélabale Suzia, Gomez Rose-Marie, Marais Armelle, Gallet Séverine, Gamiette Franciane, Pavis Claudie, Teycheney Pierre-Yves. 2020. Viruses, 12 (10):1101, 18 p.
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Sorghum mastrevirus-associated alphasatellites: New geminialphasatellites associated with an African streak mastrevirus infecting wild Poaceae plants on Reunion Island. Claverie Sohini, Varsani Arvind, Hoareau Murielle, Filloux Denis, Roumagnac Philippe, Martin Darren Patrick, Lefeuvre Pierre, Lett Jean-Michel. 2020. Archives of Virology, 165 (8) : pp. 1925-1928.
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Yam asymptomatic virus 1, a novel virus infecting yams (Dioscorea spp.) with significant prevalence in a germplasm collection. Marais Armelle, Umber Marie, Filloux Denis, Gomez Rose-Marie, Faure Chantal, Pavis Claudie, Julian Charlotte, Roumagnac Philippe, Acina Manbole Isabelle Nina, Bonheur Lydiane, Theil Sébastien, Contreras Sandy, Candresse Thierry, Teycheney Pierre-Yves. 2020. Archives of Virology, 5 p.
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A novel divergent geminivirus identified in asymptomatic new world cactaceae plants. Fontenele Rafaela S, Salywon Andrew M., Majure Lucas C., Cobb Ilaria N., Bhaskara Amulya, Avalos-Calleros Jesús, Argüello-Astorga Gerardo, Schmidlin Kara, Khalifeh Anthony, Smith Kendal, Schreck Joshua, Lund Michael, Köhler Matias, Wojciechowski Martin, Hodgson Wendy C., Puente-Martinez Raul, Van Doorslaer Koenraad, Kumari Safaa G., Vernière Christian, Filloux Denis, Roumagnac Philippe, Lefeuvre Pierre, Ribeiro Simone G., Kraberger Simona, Martin Darren Patrick, Varsani Arvind. 2020. Viruses, 12 (4):398, 26 p.
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Diverse and variable virus communities in wild plant populations revealed by metagenomic tools. Susi Hanna, Filloux Denis, Frilander Mikko J., Roumagnac Philippe, Laine Anna-Liisa. 2019. PeerJ, 7:e6140, 24 p.
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Emergence of southern rice black-streaked dwarf virus in the centuries-old Chinese Yuanyang agrosystem of rice landraces. Alonso Pascal, Gladieux Pierre, Moubset Oumaima, Shih Pei-Jung, Mournet Pierre, Frouin Julien, Blondin Laurence, Ferdinand Romain, Fernandez Emmanuel, Julian Charlotte, Filloux Denis, Adreit Henri, Fournier Elisabeth, Ducasse Aurélie, Grosbois Vladimir, Morel Jean-Benoit, Huang Huichuan, Jin Baihui, He Xiahong, Martin Darren Patrick, Vernière Christian, Roumagnac Philippe. 2019. Viruses, 11 (11):985, 13 p.
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Exploring the diversity of Poaceae infecting mastreviruses on Reunion Island using a viral metagenomicsbased approach. Claverie Sohini, Ouattara Alassane, Hoareau Murielle, Filloux Denis, Varsani Arvind, Roumagnac Philippe, Martin Darren Patrick, Lett Jean-Michel, Lefeuvre Pierre. 2019. Scientific Reports, 9:12716, 11 p.
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High‑throughput sequencing of complete genomes of ipomoviruses associated with an epidemic of cassava brown streak disease in the Comoros Archipelago. Scussel Sarah, Candresse Thierry, Marais Armelle, Claverie Sohini, Hoareau Murielle, Azali Hamza Abdou, Verdin Eric, Tepfer Mark, Filloux Denis, Fernandez Emmanuel, Roumagnac Philippe, Robene Isabelle, Lefeuvre Pierre, Jourda Cyril, Roux-Cuvelier Michel, Lett Jean-Michel. 2019. Archives of Virology, 164 (8) : pp. 2193-2196.
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Novel circular DNA viruses associated with Apiaceae and Poaceae from South Africa and New Zealand. Richet Cécile, Kraberger Simona, Filloux Denis, Bernardo Pauline, Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe, Varsani Arvind. 2019. Archives of Virology, 164 (1) : pp. 237-242.
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A new prevalent densovirus discovered in Acari. Insight from metagenomics in viral communities associated with two-spotted mite (Tetranychus urticae) populations. François Sarah, Mutuel Doriane, Duncan Alison B., Rodrigues Leonor R., Danzelle Celya, Lefevre Sophie, Santos Inês, Frayssinet Marie, Fernandez Emmanuel, Filloux Denis, Roumagnac Philippe, Froissart Rémy, Ogliastro Mylène. 2019. Viruses, 11 (3):233, 24 p.
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Characterization of alfalfa virus F, a new member of the genus Marafivirus. Nemchinov Lev G., François Sarah, Roumagnac Philippe, Ogliastro Mylène, Hammond Rosemarie W., Mollov Dimitre S., Filloux Denis. 2018. PloS One, 13 (9):e0203477, 11 p.
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First report of alfalfa leaf curl Virus affecting alfalfa (Medicago sativa) in Jordan, Lebanon, Syria, and Tunisia. Kumari Safaa G., Moukahel A.R., Richet Cécile, Galzi Serge, Filloux Denis, Roumagnac Philippe, Asaad Nader, Hijazi Jomana, Mghandef Samia. 2018. Plant Disease, 102 (10), 2052, 2 p.
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First report of alfalfa leaf curl Virus from alfalfa in Iran. Davoodi Zohreh, Heydarnejad Jahangir, Massumi Hossein, Richet Cécile, Galzi Serge, Filloux Denis, Roumagnac Philippe. 2018. Plant Disease, 102 (11) : p. 2385.
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Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale. Bernardo Pauline, Charles-Dominique Tristan, Barakat Mohamed, Ortet Philippe, Fernandez Emmanuel, Filloux Denis, Hartnady Penelope, Rebelo Tony A., Cousins Stephen, Mesleard François, Cohez Damien, Yaverkovski Nicole, Varsani Arvind, Harkins Gordon William, Peterschmitt Michel, Malmstrom Carolyn, Martin Darren Patrick, Roumagnac Philippe. 2018. ISME Journal, 12 : pp. 174-184.
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Increase in taxonomic assignment efficiency of viral reads in metagenomic studies. François Sarah, Filloux Denis, Frayssinet Marie, Roumagnac Philippe, Martin Darren Patrick, Ogliastro Mylène, Froissart Rémy. 2018. Virus Research, 244 : pp. 230-234.
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Nanopore-based detection and characterization of yam viruses. Filloux Denis, Fernandez Emmanuel, Loire Etienne, Claude Lisa, Galzi Serge, Candresse Thierry, Winter Stephan, Jeeva M.L., Makeshkumar T., Martin Darren Patrick, Roumagnac Philippe. 2018. Scientific Reports, 8:17879, 11 p.
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Nanovirus‐alphasatellite complex identi ed in Vicia cracca in the Rhône delta region of France. Gallet Romain, Kraberger Simona, Filloux Denis, Galzi Serge, Fontes Hugo, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2018. Archives of Virology, 163 (3) : pp. 695-700.
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Viral metagenomic-based screening of sugarcane from florida reveals occurrence of six sugarcane-infecting viruses and high prevalence of Sugarcane yellow leaf virus. Filloux Denis, Fernandez Emmanuel, Comstock Jack C., Mollov Dimitre S., Roumagnac Philippe, Rott Philippe. 2018. Plant Disease, 102 (11) : pp. 2317-2323.
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The westward journey of alfalfa leaf curl virus. Davoodi Zohreh, Bejerman Nicolás, Richet Cécile, Filloux Denis, Kumari Safaa G., Chatzivassiliou Elisavet K., Galzi Serge, Julian Charlotte, Samarfard Samira, Trucco Verónica, Giolitti Fabián, Fiallo-Olivé Elvira, Navas-Castillo Jesús, Asaad Nader, Rahman Moukahel Abdul, Hijazi Jomana, Mghandef Samia, Heydarnejad Jahangir, Massumi Hossein, Varsani Arvind, Dietzgen Ralf G., Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe. 2018. Viruses, 10 (10):542, 16 p.
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Complete genome sequences of cowpea polerovirus 1 and cowpea polerovirus 2 infecting cowpea plants in Burkina Faso. Palanga Essowé, Martin Darren Patrick, Galzi Serge, Zabré Jean, Bouda Zakaria, Bouma Neya James, Sawadogo Mahamadou, Traoré Oumar, Peterschmitt Michel, Roumagnac Philippe, Filloux Denis. 2017. Archives of Virology, 162 (7) : pp. 2149-2152.
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First report of maize yellow mosaic virus infecting maize in Burkina Faso. Palanga Essowé, Longué R.D.S., Koala M., Néya J.B., Traoré Oumar, Martin Darren Patrick, Peterschmitt Michel, Filloux Denis, Roumagnac Philippe. 2017. New Disease Reports, 35 : p. 26.
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Genome sequences of a capulavirus infecting Plantago lanceolata in the Aland archipelago of Finland. Susi Hanna, Laine Anna-Liisa, Filloux Denis, Kraberger Simona, Farkas Kata, Bernardo Pauline, Frilander Mikko J., Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2017. Archives of Virology, 162 (7) : pp. 2041-2045.
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Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and Réunion. Boukari Wardatou, Alcala-Briseño Ricardo I., Kraberger Simona, Fernandez Emmanuel, Filloux Denis, Daugrois Jean-Heinrich, Comstock Jack C., Lett Jean-Michel, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe, Polston Jane E., Rott Philippe. 2017. Virology Journal, 14:146, 8 p.
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Two novel Alphaflexiviridae members revealed by deep sequencing of the Vanilla (Orchidaceae) virome. Grisoni Michel, Marais Armelle, Filloux Denis, Saison Anne, Faure Chantal, Julian Charlotte, Theil Sébastien, Contreras Sandy, Teycheney Pierre-Yves, Roumagnac Philippe, Candresse Thierry. 2017. Archives of Virology, 162 (12) : pp. 3855-3861.
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Discovery of parvovirus-related sequences in an unexpected broad range of animals. François Sarah, Filloux Denis, Roumagnac Philippe, Bigot D., Gayral Philippe, Martin Darren Patrick, Froissart Rémi, Ogliastro Mylène. 2016. Scientific Reports, 6 (30880), 13 p.
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Metagenomic-based screening and molecular characterization of cowpea-infecting viruses in Burkina Faso. Palanga Essowé, Filloux Denis, Martin Darren Patrick, Fernandez Emmanuel, Gargani Daniel, Ferdinand Romain, Zabré Jean, Bouda Zakaria, Neya Bouma, Sawadogo Mahamadou, Traoré Oumar, Peterschmitt Michel, Roumagnac Philippe. 2016. PloS One, 11 (10):e0165188, 21 p.
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Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa. Bernardo Pauline, Muhire Brejnev, François Sarah, Deshoux Maëlle, Hartnady Penelope, Farkas Kata, Kraberger Simona, Filloux Denis, Fernandez Emmanuel, Galzi Serge, Ferdinand Romain, Granier Martine, Marais Armelle, Monge Blasco Pablo, Candresse Thierry, Escriu Fernando, Varsani Arvind, Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe. 2016. Virology, 493 : pp. 142-153.
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Prevalence of Sugarcane yellow leaf virus in sugarcane producing regions in Kenya revealed by reverse transcription loop-mediated isothermal amplification method. Amata Ruth Lodenyi, Fernandez Emmanuel, Filloux Denis, Martin Darren Patrick, Rott Philippe, Roumagnac Philippe. 2016. Plant Disease, 100 (2) : pp. 260-268.
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Alfalfa leaf curl virus: an aphid-transmitted geminivirus. Roumagnac Philippe, Granier Martine, Bernardo Pauline, Deshoux Maëlle, Ferdinand Romain, Galzi Serge, Fernandez Emmanuel, Julian Charlotte, Abt Isabelle, Filloux Denis, Mesleard François, Varsani Arvind, Blanc Stéphane, Martin Darren Patrick, Peterschmitt Michel. 2015. Journal of Virology, 89 (18) : pp. 9683-9688.
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Metagenomic analysis of the sugarcane virome in Florida reveals prevalent and potential novel viruses. Fernandez Emmanuel, Filloux Denis, Comstock Jack C., Roumagnac Philippe, Rott Philippe. 2015. Phytopathology, 105 (11S), Résumé : S4.43. 2015 APS Annual Meeting, Pasadena, États-Unis, 1 August 2015/5 August 2015.
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The genomes of many yam species contain transcriptionally active endogenous geminiviral sequences that may be functionally expressed. Filloux Denis, Murrell Sasha, Koohapitagtam M., Golden Michael, Julian Charlotte, Galzi Serge, Uzest Marilyne, Rodier-Goud Marguerite, D'Hont Angélique, Vernerey Marie-Stéphanie, Wilkin P., Peterschmitt Michel, Winter Stephan, Murrell Ben, Martin Darren Patrick, Roumagnac Philippe. 2015. Virus Evolution, 1 (1), 17 p.
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Appearances can be deceptive: Revealing a hidden viral infection with deep sequencing in a plant quarantine Context. Candresse Thierry, Filloux Denis, Muhire Brejnev, Julian Charlotte, Galzi Serge, Fort Guillaume, Bernardo Pauline, Daugrois Jean-Heinrich, Fernandez Emmanuel, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2014. PloS One, 9 (7):e102945, 13 p.
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Molecular characterization of yam virus X, a new potexvirus infecting yams (Dioscorea spp) and evidence for the existence of at least three distinct potexviruses infecting yams. Acina Manbole Isabelle Nina, Bonheur Lydiane, Svanella-Dumas Laurence, Filloux Denis, Gomez Rose-Marie, Faure Chantal, Lange David, Anzala Fabiola, Pavis Claudie, Marais Armelle, Roumagnac Philippe, Candresse Thierry, Teycheney Pierre-Yves. 2014. Archives of Virology, 159 (12) : pp. 3421-3426.
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Positional cloning of the rice male sterility gene ms-IR36, widely used in the inter-crossing phase of recurrent selection schemes. Frouin Julien, Filloux Denis, Taillebois James E., Grenier Cécile, Montes Fabienne, De Lamotte Frédéric, Verdeil Jean-Luc, Courtois Brigitte, Ahmadi Nourollah. 2014. Molecular Breeding, 33 (3) : pp. 555-567.
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The genome of African yam (Dioscorea cayenensis-rotundata complex) hosts endogenous sequences from four distinct badnavirus species. Umber Marie, Filloux Denis, Muller Emmanuelle, Laboureau Nathalie, Galzi Serge, Roumagnac Philippe, Iskra Caruana Marie-Line, Pavis Claudie, Teycheney Pierre-Yves, Seal Susan. 2014. Molecular Plant Pathology, 15 (8) : pp. 790-801.
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A novel itera-like densovirus isolated by viral metagenomics from the sea barley Hordeum marinum. François Sarah, Bernardo Pauline, Filloux Denis, Roumagnac Philippe, Yaverkovski Nicole, Froissart Rémi, Ogliastro Mylène. 2014. Genome Announcements, 2 (6):e01196, 2 p.
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The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Seal Susan, Turaki Aliyu, Muller Emmanuelle, Lava Kumar P., Kenyon Lawrence, Filloux Denis, Galzi Serge, Lopez-Montes Antonio, Iskra Caruana Marie-Line. 2014. Virus Research, 186 : pp. 144-145. International Plant Virus Epidemiology Symposium. 12, Arusha, Tanzanie, 28 January 2013/1 February 2013.
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Cryopreservation of yam germplasm in Guadeloupe (FWI). Gallet Séverine, Gamiette Franciane, Filloux Denis, Engelmann Florent. 2007. Advances in Horticultural Science, 21 (4) : pp. 244-246.

Ocorrência de YMMV em Dioscorea alata no estado de Pernambuco : [Poster, Resumo]. Andrade G.P., Silva A.K.S., Filloux Denis, Pio-Ribeiro Gilvan, Kitajima E.W., Xavier D.M., Nascimento R.J.. 2006. Fitopatologia Brasileira, 31, suppl., S344
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Pour la mise en place d'un centre de transit dédié aux plantes à racines et tubercules. Filloux Denis. 2004. Troupeaux et Cultures des Tropiques (4) : pp. 35-37.

Book chapter

From spatial metagenomics to molecular characterization of plant viruses: A geminivirus case study. Claverie Sohini, Bernardo Pauline, Kraberger Simona, Hartnady Penelope, Lefeuvre Pierre, Lett Jean-Michel, Galzi Serge, Filloux Denis, Harkins Gordon William, Varsani Arvind, Martin Darren Patrick, Roumagnac Philippe. 2018. In : Environmental virology and virus ecology. Malmstrom Carolyn M. (ed.). Burlington : Academic Press, pp. 55-83. (Advances in Virus Research, 101) ISBN 978-0-12-814415-2
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Viral metagenomics and sugarcane pathogens. Roumagnac Philippe, Mollov Dimitre S., Daugrois Jean-Heinrich, Filloux Denis. 2018. In : Achieving sustainable cultivation of sugarcane. Volume 2: Breeding, pests and diseases. Rott Philippe (ed.). Cambridge : Burleigh Dodds Science Publishing, pp. 183-200. (Burleigh Dodds Series in Agricultural Science) ISBN 978-1-78676-148-4
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Viral metagenomics approaches for high-resolution screening of multiplexed arthropod and plant viral communities. François Sarah, Filloux Denis, Fernandez Emmanuel, Ogliastro Mylène, Roumagnac Philippe. 2018. In : Viral metagenomics: methods and protocols. Pantaleo Vitantonio (ed.), Chiumenti Michela (ed.). New York : Humana Press, pp. 77-95. (Methods in Molecular Biology, 1746, 1746) ISBN 978-1-4939-7682-9
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Metagenomics approaches based on virion-associated nucleic acids (VANA): an innovative tool for assessing without A priori viral diversity of plants. Filloux Denis, Dallot Sylvie, Delaunay Agnès, Galzi Serge, Jacquot Emmanuel, Roumagnac Philippe. 2015. In : Plant pathology: techniques and protocols. Lacomme Christophe (ed.). New York : Springer [Etats-Unis], pp. 249-257. (Methods in Molecular Biology, 1302) ISBN 978-1-4939-2619-0
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SNaPshot and CE-SSCP: two simple and cost-effective methods to reveal genetic variability within a virus species. Delaunay Agnès, Dallot Sylvie, Filloux Denis, Dupuy Virginie, Roumagnac Philippe, Jacquot Emmanuel. 2015. In : Plant pathology: techniques and protocols. Lacomme Christophe (ed.). New York : Springer [Etats-Unis], pp. 187-206. (Methods in Molecular Biology, 1302) ISBN 978-1-4939-2619-0
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La cartographie de la population de IR64/ Azucena. Guiderdoni Emmanuel, Courtois Brigitte, Huang Ning, Mc Couch Susan R., Ghesquière Alain, Lorieux Mathias, Filloux Denis, Albar Laurence, Ahmadi Nourollah, Tharreau Didier, Nottéghem Jean-Loup. 2006. In : La France et le CGIAR : delivering scientific results for agricultural development = France and the CGIAR : delivering scientific results for agricultural development. Rocchi Daniel (ed.), Despréaux Denis (ed.), Frison Emile A. (ed.), Hubert Bernard (ed.), Lantin Manuel M. (ed.). Washington : CGIAR, pp. 34-38.

Using molecular markers in rice population through recurrent selection. Courtois Brigitte, Filloux Denis, Ahmadi Nourollah, Noyer Jean-Louis, Billot Claire, Guimaraes Elcio Perpetuo. 2005. In : Population improvement: A way of exploiting the rice genetic resources of Latin America. Guimaraes Elcio Perpetuo (ed.). FAO, EMBRAPA, CIRAD-CA. Rome : FAO, pp. 53-74.

Uso de marcadores moleculares para el manejo de poblaciones de arroz mejoradas mediante la seleccion recurrente. Courtois Brigitte, Filloux Denis, Ahmadi Nourollah, Noyer Jean-Louis, Billot Claire, Guimaraes Elcio Perpetuo. 2003. In : Mejoramiento poblacional, una alternativa para explorar los recursos genéticos del arroz en América latina. Guimaraes Elcio Perpetuo (ed.). FAO, EMBRAPA, CIRAD-CA. Cali : CIAT, pp. 53-76. ISBN 958-694-061-6

Le riz. Guiderdoni Emmanuel, Courtois Brigitte, Filloux Denis. 1996. In : Intégration chez les plantes tropicales 2 = [Integration in tropical plants]. Teisson C. Paris : AUPELF-UREF, pp. 117-151.

Guest paper

Geometagenomics: A second metagenomics generation to better understand plant virus ecology and evolution. Filloux Denis, Martin Darren Patrick, Roumagnac Philippe. 2018. . Liège : s.n., 1 p. Final Meeting of COST-DIVAS Action: HTS Technologies for the study and diagnostic of plant viruses, Liège, Belgique, 26 November 2018/30 November 2018.
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Paper with proceedings

Improvements in virus detection at CIRAD's sugarcane quarantine using both viral metagenomics and PCR-based approaches. Fernandez Emmanuel, Ferdinand Romain, Filloux Denis, Guinet Isabelle, Julian Charlotte, Rott Philippe, Roumagnac Philippe, Daugrois Jean-Heinrich. 2019. In : Proceedings of the XXX International Society of Sugar Cane Technologists Congress. ISSCT. Tucuman : ISSCT, pp. 345-351. ISBN 978-616-92761-0-4 ISSCT Congress. 30, Tucuman, Argentine, 2 September 2019/5 September 2019.
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Genomic characterization of sugarcane mild mosaic virus. Filloux Denis, Fernandez Emmanuel, Mollov Dimitre S., Julian Charlotte, Rott Philippe, Roumagnac Philippe, Daugrois Jean-Heinrich. 2018. In : Book of Abstracts XII ISSCT Pathology Workshop. Coimbatore : ISSCT, pp. 26-27. ISSCT Pathology Workshop. 12, Coimbatore, Inde, 3 September 2018/7 September 2018.
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Identification of two SCYLV recombinants between different genotypes in the germplasm collection of Guadeloupe. Fernandez Emmanuel, Filloux Denis, Julian Charlotte, Roumagnac Philippe, Daugrois Jean-Heinrich. 2018. In : Book of Abstracts XII ISSCT Pathology Workshop. Coimbatore : ISSCT, p. 28. ISSCT Pathology Workshop. 12, Coimbatore, Inde, 3 September 2018/7 September 2018.
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Visacane sugarcane quarantine and its partner networks. Fernandez Emmanuel, Thong-Chane Audrey, Barau Laurent, Filloux Denis, Guinet-Brial Isabelle, Mollow Dimitre, Julian Charlotte, Ferdinand Romain, Roumagnac Philippe, Daugrois Jean-Heinrich. 2018. In : Sugar Crops Improvement, Biotechnology, Bio-refinery and Diversification: Impacts on Bio-based Economy. Thailand Society of Sugar Technologists. Udon Thani : Thailand Society of Sugar Technologists, 4 p. IAPSIT International Sugar Conference. 6, Udon Thani, Thaïlande, 6 March 2018/9 March 2018.
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Visacane sugarcane quarantine and its partner networks. Fernandez Emmanuel, Thong-Chane Audrey, Barau Laurent, Filloux Denis, Guinet-Brial Isabelle, Mollow Dimitre, Julian Charlotte, Ferdinand Romain, Roumagnac Philippe, Daugrois Jean-Heinrich. 2018. In : Sugar crops improvement, biotechnology, Bio-refinery and diversification: Impacts on bio-based economy: 6th IAPSIT International Sugar Conference. Souvenir de presentation IS-2018. Rao G.P. (ed;), Solomon S. (ed.), Li Yang-Rui (ed.), Swapna M. (ed.), Sinh Priyanka (ed.), Tiwari Ajay (ed.), Vanichsriratana Wirat (ed.), Uraichuen Sopon (ed.). TSSCT, Kasetsart University, IAPSIT. Udon Thani : TSSCT-IAPSIT, Résumé, p. 52. IAPSIT International Sugar Conference. 6, Udon Thani, Thaïlande, 6 March 2018/9 March 2018.
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Metagenomics-based exploration of the genetic diversity of SCYLV in the sugarcane collection of Guadeloupe. Fernandez Emmanuel, Filloux Denis, Julian Charlotte, Lubin Adjanoh Nadia, Teycheney Pierre-Yves, Candresse Thierry, Roumagnac Philippe, Daugrois Jean-Heinrich. 2016. In : Building bridges between disciplines for sustainable management of plant virus diseases. INRA, Université d'Avignon. Avignon : INRA, Résumé, p. 83. International Plant Virus Epidemiology Symposium. 13, Avignon, France, 6 June 2016/10 June 2016.
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Impact of NGS-based diagnosis on sugarcane quarantine processes. Daugrois Jean-Heinrich, Darroussat Marie-Josée, Fenouillet Catherine, Ferdinand Romain, Fernandez Emmanuel, Filloux Denis, Galzi Serge, Guinet-Brial Isabelle, Julian Charlotte, Lubin Nadia, Roques Danièle, Roumagnac Philippe. 2015. In : Book of abstracts. XI Pathology and IX Entomology ISSCT joint Workshop. FIADE. Guayaquil : FIADE, Résumé, p. 17. ISSCT Pathology Workshop. 11, Guayaquil, Équateur, 14 September 2015/18 September 2015.
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Characterisation of badnaviruses and endogenous pararetroviruses in West African yam breeding lines. Turaki Aliyu, Lava Kumar P., Lopez-Montes Antonio, Seal Susan, Muller Emmanuelle, Galzi Serge, Filloux Denis, Iskra Caruana Marie-Line. 2013. In : Building bridges between disciplines for sustainable management of plant virus diseases. Lava Kumar P. (ed), Lopez Katherine (ed.), Njuguma Catherine (ed.). ICTVE, IITA. Ibadan : IITA, p. 63. ISBN 978-978-8444-08-4 International Plant Virus Epidemiology Symposium. 12, Arusha, Tanzanie, 28 January 2013/1 February 2013.
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Geo-metagenomics: deciphering the spatial biodiversity of plant viruses associated with the unique fynbos ecosystem of Southern Africa and its neighbouring agro-ecosystem. Bernardo Pauline, Ortet Philippe, Barakat Mohamed, Rebelo Anthony, Cousins Stephen, Fernandez Emmanuel, Peterschmitt Michel, Filloux Denis, Varsani Arvind, Martin Darren Patrick, Roumagnac Philippe. 2013. In : EMBO Workshop Green Viruses, from Gene to Landscape, 7-11 September 2013, Hyères-les-Palmiers, France : programme and abstracts book. CNRS, UMR BGPI. s.l. : s.n., Résumé, p. 43. EMBO Workshop Green Viruses, from Gene to Landscape, Hyères-les-Palmier, France, 7 September 2013/11 September 2013.
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The INTERREG-DEVAG project : a regional network for the development of agroecological cropping systems for horticultural crops in the Carribbean. Fernandes Paula, Lavigne Christian, Rhino Béatrice, Langlais Christian, Deberdt Peninna, Diédhiou Siré, Ratnadass Alain, Jannoyer Magalie, Malézieux Eric, Filloux Denis. 2011. In : Proceedings of the First International symposium on tropical horticulture, Kingston, Jamaica, November 22-26, 2010. Benkeblia Noureddine (ed.). ISHS-Section tropical and subtropical fruits. Louvain : ISHS [Belgique], pp. 147-151. (Acta Horticulturae, 894) ISBN 978-90-66050-67-9 International Society for Horticultural Science.
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Poster

Another night at the museum: searching for traces of plant viruses using the virion-associated nucleic acid metagenomics approach. [P.21]. Julian Charlotte, Filloux Denis, Rieux Adrien, Lefeuvre Pierre, Lett Jean-Michel, Becker Nathalie, Gagnevin Lionel, Trinder-Smith Terry H., Hartnady Penelope, Martin Darren Patrick, Roumagnac Philippe. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, p. 80. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 January 2019/31 January 2019.
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Assessment of the viral disease threats on sorghum and phenotyping support on diseases. [P.29]. Bangratz Martine, Tibiri Ezechiel Bionimian, Julian Charlotte, Filloux Denis, Pinel-Galzi Agnès, Brugidou Christophe, Roumagnac Philippe, Tiendrebeogo Fidèle, Hébrard Eugénie. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, p. 88. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 January 2019/31 January 2019.
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Diversity and composition of arthropod pests' viral communities, and insights about pest viruses distribution in arthropod communities. [P.08]. François Sarah, Kulikowski Maximilien, Frayssinet Marie, Filloux Denis, Fernandez Emmanuel, Roumagnac Philippe, Froissart Rémi, Ogliastro Mylène. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, p. 67. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 January 2019/31 January 2019.
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Global geographical distribution of capulaviruses. [P.42]. Galzi Serge, Filloux Denis, Richet Cécile, Julian Charlotte, Ferdinand Romain, Davoodi Zohreh, Bejerman Nicolás, Kumari Safaa G., Chatzivassiliou Elisavet K., Fiallo-Olivé Elvira, Navas-Castillo Jesús, Susi Hanna, Laine Anna-Liisa, Varsani Arvind, Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, p. 101. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 January 2019/31 January 2019.
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Nanopore-based detection and characterization of plant viruses. [P.14]. Filloux Denis, Fernandez Emmanuel, Roumagnac Philippe. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, p. 73. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 January 2019/31 January 2019.
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PCR-mediated sugarcane bacilliform virus detection for quarantine purpose. [P.39]. Daugrois Jean-Heinrich, Fernandez Emmanuel, Filloux Denis. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, p. 98. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 January 2019/31 January 2019.
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Reverse transcriptase template switching: a method for without a priori amplification of full-length genome of positive-sense single-strand polyadenylated RNA plant viruses. [P.51]. Claude Lisa, Fernandez Emmanuel, Roumagnac Philippe, Filloux Denis. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, p. 110. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 January 2019/31 January 2019.
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Development of MetaXplor: a viral metagenomics database. P29. Filloux Denis, Petel Adrien, Sempere Guilhem, Claverie Sohini, Lefeuvre Pierre, Mahe Frédéric, Roumagnac Philippe. 2018. In : Book of abstract Pathobiome 2018. INRA. Ajaccio : INRA, Résumé, p. 50. Pathobiome, Ajaccio, France, 18 March 2018/20 March 2018.
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Exploring within-host diversity of plant viruses in rice agrosystems using two high-throughput sequencing strategies. Poulicard Nils, Dereeper Alexis, Pinel-Galzi Agnès, Fernandez Emmanuel, Julian Charlotte, Hubert Judith, Filloux Denis, Fargette Denis, Roumagnac Philippe, Hébrard Eugénie. 2018. In : Book of abstract of the International Phytobiomes Conference 2018. International Phytobiomes Alliance, INRA, IRD. Montpellier : International Phytobiomes Alliance-INRA, p. 68. International phytobiomes conference. 2, Montpellier, France, 4 December 2018/6 December 2018.
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Relationship between rice genetic diversity and microbiota composition in traditional Yuanyang rice terraces of China. P1. Filloux Denis, Ferdinand Romain, Fernandez Emmanuel, Huang Huichuan, Jin Baihui, He Xiahong, Ali S., Vernière Christian, Roumagnac Philippe. 2018. In : Book of abstract Pathobiome 2018. INRA. Ajaccio : INRA, Résumé, p. 32. Pathobiome, Ajaccio, France, 18 March 2018/20 March 2018.
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Rice genetic diversity and microbiome characterization of a centuries-old Chinese rice agro-system. Alonso Pascal, Filloux Denis, Blondin Laurence, Mahe Frédéric, Fournier Elisabeth, Gladieux Pierre, Ducasse Aurélie, Morel Jean-Benoit, Mournet Pierre, Huang Huichuan, Jin Baihui, He Xiahong, Ferdinand Romain, Fernandez Emmanuel, Vernière Christian, Roumagnac Philippe. 2018. In : Book of abstract of the International Phytobiomes Conference 2018. International Phytobiomes Alliance, INRA, IRD. Montpellier : International Phytobiomes Alliance-INRA, p. 48. International phytobiomes conference. 2, Montpellier, France, 4 December 2018/6 December 2018.
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Development of bioinformatics tools for sequence data mining and virus discovery. [P40]. Filloux Denis, Petel Adrien, Sempere Guilhem, Claverie Sohini, Lefeuvre Pierre, Mahe Frédéric, Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, p. 101. Rencontres de virologie végétale, Aussois, France, 15 January 2017/19 January 2017.
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Genetic diversity within yam Badnavirus species and their relationship with endogenous Dioscorea bacilliform virus sequences (eDBV) into yam genome. P61. Umber Marie, Gomez Rose-Marie, Filloux Denis, Pavis Claudie, Teycheney Pierre-Yves. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, p. 122. Rencontres de virologie végétale, Aussois, France, 15 January 2017/19 January 2017.
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Improved diagnosis tools for the detection of yam virus in the sanitation process and unveil virus-free accessions for international exchange. [P19]. Gomez Rose-Marie, Gélabale Suzia, Filloux Denis, Gamiette Franciane, Pavis Claude, Umber Marie. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, p. 80. Rencontres de virologie végétale, Aussois, France, 15 January 2017/19 January 2017.
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Metagenomics-based discovery and molecular characterization of a novel sugarcane mastrevirus. [P13]. Fernandez Emmanuel, Boukari Wardatou, Alcala-Briseño Ricardo I., Kraberger Simona, Filloux Denis, Lett Jean-Michel, Lefeuvre Pierre, Comstock Jack C., Daugrois Jean-Heinrich, Varsani Arvind, Polston Jane E., Rott Philippe, Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, p. 74. Rencontres de virologie végétale, Aussois, France, 15 January 2017/19 January 2017.
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Metagenomics-based discovery and molecular characterization of novel geminiviruses from two Mediterranean-climate biodiversity hotspots. [P57]. Galzi Serge, Bernardo Pauline, Fernandez Emmanuel, Julian Charlotte, Ferdinand Romain, Harkins Gordon William, Peterschmitt Michel, Martin Darren Patrick, Filloux Denis, Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, p. 118. Rencontres de virologie végétale, Aussois, France, 15 January 2017/19 January 2017.
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Spatial metagenomics illuminate the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale. Roumagnac Philippe, Bernardo Pauline, Charles-Dominique Tristan, Fernandez Emmanuel, Filloux Denis, Ortet Philippe, Barakat Mohamed, Rebelo Tony A., Cousins Stephen, Mesleard François, Cohez Damien, Yaverkovski Nicole, Varsani Arvind, Harkins Gordon William, Peterschmitt Michel, Malmstrom Carolyn M., Martin Darren Patrick. 2017. . Paris : INRA, p. 93. International Conference on Holobionts, Paris, France, 19 April 2017/21 April 2017.
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Sugarcane mild mosaic virus: towards the full characterization of this sugarcane Ampelovirus re-discovered using metagenomics-based approaches. [P03]. Daugrois Jean-Heinrich, Candresse Thierry, Fernandez Emmanuel, Filloux Denis, Julian Charlotte, Teycheney Pierre-Yves, Mollov Dimitre S., Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, p. 64. Rencontres de virologie végétale, Aussois, France, 15 January 2017/19 January 2017.
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Understanding how long-term microbiome-plant-environment interactions drive the emergence or non-emergence of rice diseases in the Chinese Yunnan province. [P39]. Alonso Pascal, Filloux Denis, Ferdinand Romain, Blondin Laurence, Baihui, He Xiahong, Vernière Christian, Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, p. 100. Rencontres de virologie végétale, Aussois, France, 15 January 2017/19 January 2017.
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Using preserved herbarium specimens to analyse past viral diversity: preliminary methodological results. [P53]. Julian Charlotte, Fernandez Emmanuel, Lefeuvre Pierre, Lett Jean-Michel, Bernardo Pauline, Malmstrom Carolyn M., Martin Darren Patrick, Filloux Denis, Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, p. 114. Rencontres de virologie végétale, Aussois, France, 15 January 2017/19 January 2017.
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Viral metagenomics-based approach to uncover mastreviruses diversity within Reunion Island's agroecological interfaces. [P50]. Claverie Sohini, Ouattara Alassane, Hoareau Murielle, Hascoat Jérémy, Lebreton Gérard, Grondin Martial, Fernandez Emmanuel, Filloux Denis, Roumagnac Philippe, Lett Jean-Michel, Lefeuvre Pierre. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, p. 111. Rencontres de virologie végétale, Aussois, France, 15 January 2017/19 January 2017.
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Identification of a new Mastrevirus of Saccharum barberi, Saccharum officinarum and Saccharum spontaneum in Florida. Boukari Wardatou, Alcala-Briseño Ricardo I., Kraberger Simona, Fernandez Emmanuel, Filloux Denis, Comstock Jack C., Varsani Arvind, Roumagnac Philippe, Polston Jane E., Rott Philippe. 2016. . Tampa : s.n., Résumé, pp. 1-2. APS annual meeting, Tampa, États-Unis, 30 July 2016/3 August 2016.
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The genomes of several plant species contain endogenous geminiviral sequences. Filloux Denis, Murrell Sasha, Koohapitagtam M., Golden Michael, Julian Jacqueline, Galzi Serge, Uzest Marilyne, Rodier-Goud Marguerite, D'Hont Angélique, Vernerey Marie-Stéphanie, Wilkin P., Peterschmitt Michel, Winter Stephan, Murrell Ben, Martin Darren Patrick, Roumagnac Philippe. 2016. In : 8th International Geminivirus Symposium. University of Delhi, Jawaharlal Nehru University, Jamia Millia Islamia, ICAR-NRCPB , NIPGR, Indian Virological Society. s.l. : s.n., p. 1. International Geminivirus Symposium. 8, New Delhi, Inde, 7 November 2016/10 November 2016.
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Looking for the vector of the latest discovered geminivirus genus, Capulavirus. [P.48]. Bernardo Pauline, Deshoux Maëlle, Granier Martine, Ferdinand Romain, Galzi Serge, Fernandez Emmanuel, Blanc Stéphane, Filloux Denis, Peterschmitt Michel, Roumagnac Philippe. 2015. In : 15èmes Rencontres de Virologie Végétale, Aussois, France, 18-22 janvier 2015. CIRAD ; IRD. s.l. : s.n., Résumé, p. 106. Rencontres de virologie végétale. 15, Aussois, France, 18 January 2015/22 January 2015.
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Metagenomic discovery, worldwide distribution and genetic diversity of novel macluraviruses infecting yams (Dioscorea spp.). [P.28]. Filloux Denis, Bonheur Lydiane, Umber Marie, Pavis Claudie, Fernandez Emmanuel, Galzi Serge, Julian Charlotte, Daugrois Jean-Heinrich, Sukal Amit, Winter Stephan, Teycheney Pierre-Yves, Candresse Thierry, Roumagnac Philippe. 2015. In : 15èmes Rencontres de Virologie Végétale, Aussois, France, 18-22 janvier 2015. CIRAD ; IRD. s.l. : s.n., Résumé, p. 86. Rencontres de virologie végétale. 15, Aussois, France, 18 January 2015/22 January 2015.
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Metagenomic screening of the sugarcane virome in Florida. [P.36]. Fernandez Emmanuel, Filloux Denis, Comstock Jack C., ElSayed Abdelaleim, Roumagnac Philippe, Rott Philippe. 2015. In : 15èmes Rencontres de Virologie Végétale, Aussois, France, 18-22 janvier 2015. CIRAD ; IRD. s.l. : s.n., Résumé, p. 94. Rencontres de virologie végétale. 15, Aussois, France, 18 January 2015/22 January 2015.
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Metagenomics-based detection of viruses infecting cowpea in Burkina-Faso. [P.30]. Palanga Essowè, Fernandez Emmanuel, Filloux Denis, Ferdinand Romain, Bouma Neya James, Sawadogo Mahamadou, Traoré Oumar, Peterschmitt Michel, Roumagnac Philippe. 2015. In : 15èmes Rencontres de Virologie Végétale, Aussois, France, 18-22 janvier 2015. CIRAD ; IRD. s.l. : s.n., Résumé, p. 88. Rencontres de virologie végétale. 15, Aussois, France, 18 January 2015/22 January 2015.
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Molecular characterization of novel viral species of the families Closteroviridae and Secoviridae infecting yams. [P.07]. Teycheney Pierre-Yves, Gomez Rose-Marie, Lange David, Pavis Claudie, Umber Marie, Acina Manbole Isabelle Nina, Bonheur Lydiane, Filloux Denis, Roumagnac Philippe, Candresse Thierry, Contreras Sandy, Faure Chantal, Marais Armelle, Svanella-Dumas Laurence, Theil Sébastien. 2015. In : 15èmes Rencontres de Virologie Végétale, Aussois, France, 18-22 janvier 2015. CIRAD ; IRD. s.l. : s.n., Résumé, p. 65. Rencontres de virologie végétale. 15, Aussois, France, 18 January 2015/22 January 2015.
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Worldwide genetic diversity of Sugarcane white streak virus. [P.43]. Fenouillet Catherine, Filloux Denis, Galzi Serge, Roumagnac Philippe, Daugrois Jean-Heinrich. 2015. In : 15èmes Rencontres de Virologie Végétale, Aussois, France, 18-22 janvier 2015. CIRAD ; IRD. s.l. : s.n., Résumé, p. 101. Rencontres de virologie végétale. 15, Aussois, France, 18 January 2015/22 January 2015.
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Characterization and diagnostic of Yam virus X (YVX) and Yam necrosis virus (YNV), two novel viruses infecting yams in Guadeloupe. Acina Manbole Isabelle Nina, Bonheur Lydiane, Anzala Fabiola, Gomez Rose-Marie, Lange Dominique, Faure Chantal, Marais Armelle, Pavis Claudie, Roumagnac Philippe, Filloux Denis, Candresse Thierry, Teycheney Pierre-Yves. 2013. In : 14èmes Rencontres de virologie végétale (RVV 2013) : Aussois, France, 13-17 janvier 2013. Marais Armelle (ed.), Revers Frédéric (ed.). SFP, INRA. Paris : SFP, Résumé, p. 57. Rencontres de Virologie Végétale. 14, Aussois, France, 13 January 2013/17 January 2013.
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Towards a better characterization of endogenous badnavirus sequences of yams (Dioscorea spp.). Umber Marie, Laboureau Nathalie, Muller Emmanuelle, Roumagnac Philippe, Iskra Caruana Marie-Line, Pavis Claudie, Teycheney Pierre-Yves, Filloux Denis. 2013. In : 14èmes Rencontres de virologie végétale (RVV 2013) : Aussois, France, 13-17 janvier 2013. Marais Armelle (ed.), Revers Frédéric (ed.). SFP, INRA. Paris : SFP, Résumé, p. 99. Rencontres de Virologie Végétale. 14, Aussois, France, 13 January 2013/17 January 2013.
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Yam virus X (YVX) et Yam necrosis virus (YNV), deux nouveaux virus des genres Potexvirus et Sadwavirus infectant les ignames en Guadeloupe. Acina Manbole Isabelle Nina, Bonheur Lydiane, Anzala Fabiola, Gomez Rose-Marie, Lange Dominique, Faure Chantal, Filloux Denis, Roumagnac Philippe, Marais Armelle, Candresse Thierry, Pavis Claudie, Teycheney Pierre-Yves. 2012. In : 8e colloque de la Société Française de Phytopathologie, 5 au 8 juin 2012,Paris, France : Livre des résumés. Attard Agnès (ed.), Barny Marie-Anne (ed.), Brisset Marie-Noelle (ed.), Cilas Christian (ed.), Dellagi Alia (ed.), Desprez-Loustau Marie-Laure (ed.), Expert Dominique (ed.), Fabre Frédéric (ed.), Fagard Mathilde (ed.), Fudal Isabelle (ed.), Genin Stéphane. SFP, INRA, CNRS. Paris : SFP, Résumé, p. 73. Congrès de la Société française de phytopathologie. 8, Paris, France, 5 June 2012/8 May 2012.
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Exploration sans a priori de la biodiversité phytovirale de l'igname (Dioscorea spp.) en serre de quarantaine. Filloux Denis, Galzi Serge, Fernandez Emmanuel, Roumagnac Philippe. 2011. In : 13èmes Rencontres de virologie végétale (RVV 2011), Aussois, France, 16-20 janvier 2011. SFP. s.l. : s.n., 1 p. Rencontres de virologie végétale. 13, Aussois, France, 16 January 2011/20 January 2011.
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Géo-métagénomique. Déchiffrer la biodiversité spatiale des phytovirus associés à des agro-écosystèmes tropicaux et méditerranéens. Fernandez Emmanuel, Galzi Serge, Filloux Denis, Girard Jean-Claude, Martin Darren Patrick, Roumagnac Philippe. 2011. In : 13èmes Rencontres de virologie végétale (RVV 2011), Aussois, France, 16-20 janvier 2011. SFP. s.l. : s.n., 1 p. Rencontres de virologie végétale. 13, Aussois, France, 16 January 2011/20 January 2011.
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The INTERREG-DEVAG project: a regional network for the development of agroecological cropping systems for horticultural crops in the Caribbean. Fernandes Paula, Otero Pujol Lilliam, Padron Cespedes Elda Cristina, Mazorra Calero Carlos, Prophete Emmanuel, De Lacroix Stéphanie, Lavigne Christian, Eunide Alphonse Marie, Cueto Rodriguez Jorge Rolando, Fernandez Delgado Jany, Fontes Marrero Dayami, Chauvet Eric., Arnau Gemma, Pena Turruellas Elizabeth, Borges Mirtha, Lezcano Mas Yohanka, Filloux Denis, Carvil Nicolas, Pinon Gomez Mayte, Del Vallin Borrego Gladys, Temple Ludovic, Duchaufour Hervé, Crux Borruel Mercedes, Rhino Béatrice, Langlais Christian, Deberdt Peninna, Diédhiou Siré, Dick Richard, Ratnadass Alain, Jannoyer-Lesueur Magalie, Malézieux Eric. 2011. In : Assuring carribean food and nutrition security in the context of climate change : 47th Annual meeting Caribbean Food Crops Society (CFCS), Bridgetown, Barbade, July 3rd-9th, 2011. s.l. : s.n., 1 p. Annual Meeting of Caribbean Food Crops Society. 47, Bridgetown, Barbade, 3 July 2011/9 July 2011.
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Molecular characterization of Secoviridae and Potexvirus infecting yams (Dioscorea spp). Anzala Fabiola, Filloux Denis, Gomez Rose-Marie, Roumagnac Philippe, Pavis Claudie, Teycheney Pierre-Yves. 2011. In : 15th International Congress of Virology, 11-16 September 2011, Sapporo, Japon : International Union of Microbiological Societies 2011 Congress (IUMS 2011), 6-16 September, Sapporo, Japon. s.l. : s.n., Résumé, 1 p. International Congress of Virology. 15, Sapporo, Japon, 11 September 2011/16 September 2011.
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Caractérisation génétique et virale des ignames cultivées de Madagascar. Rajaonah Mamy Tiana, Chaïr Hâna, Rodier Marguerite, Filloux Denis, Jeannoda Vololoniaina. 2010. In : 19ème Congrès de l'AETFAT sur la diversité des plantes africaines, systématique et développement durable, 25-30 avril 2010, Madagascar. s.l. : s.n., 1 p. Congrès de l'AETFAT sur la diversité des plantes africaines, systématique et développement durable. 19, Madagascar, 25 April 2010/30 April 2010.
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The INTERREG-DEVAG project: a regional network for the development of agroecological cropping systems for horticultural crops in the Caribbean. Fernandes Paula, Otero Pujol Lilliam, Padron Cespedes Elda Cristina, Mazorra Calero Carlos, Prophète Caroline, De Lacroix Stéphanie, Lavigne Christian, Eunide Alphonse Marie, Cueto Rodriguez Jorge Rolando, Fernandez Delgado Jany, Fontes Marrero Dayami, Chauvet Eric., Arnau Gemma, Pena Turruellas Elizabeth, Borges Mirtha, Lezcano Mas Yohanka, Filloux Denis, Carvil Nicolas, Pinon Gomez Mayte, Del Vallin Borrego Gladys, Temple Ludovic, Duchaufour Hervé, Crux Borruel Mercedes, Rhino Béatrice, Langlais Christian, Deberdt Peninna, Diédhiou Siré, Ratnadass Alain, Jannoyer Magalie, Malézieux Eric. 2010. In : First International Symposium on Tropical Horticulture (TropHort 2010), November, 22-26, 2010, Kingston, Jamaica. s.l. : s.n., 1 p. International Symposium on Tropical Horticulture. 1, Kingston, Jamaïque, 22 November 2010/26 November 2010.
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Detection and partial characterization of two new potexviruses infecting yams (Dioscorea spp.). Filloux Denis, Galzi Serge. 2009. In : 15th Triennal Symposium of the International Society for Tropical Root Crops (ISTRC). Tropical roots and tubers in a changing climate: A convement opportunity for the world, 2-6 November 2009, Lima, Peru. s.l. : s.n., 1 p. Symposium of the International Society for Tropical Root Crops. 15, Lima, Pérou, 2 November 2009/6 November 2009.
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Efforts récents pour la détection et la caractérisation des virus infectant les ignames (Dioscorea spp.) pour garantir l'état sanitaire du germplasme. Filloux Denis, Galzi Serge, Pereira de Andrade Genira, Pio-Ribeiro Gilvan, Gallet Séverine, Umber Marie, Gamiette Franciane. 2009. In : 12èmes Rencontres de virologie végétale, Aussois du 18 au 22 janvier 2009. SFP. s.l. : s.n., 1 p. Rencontres de virologie végétale. 12, Aussois, France, 18 January 2009/22 January 2009.
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Assessment of phyosanitary problems of yam in Northeastern Brazil. Andrade G.P., Khalid M.A., Xavier D.M., Vernier Philippe, Filloux Denis, Pio-Ribeiro Gilvan. 2008. In : Meeting of the Brazilian Phytopathological Society, Belo Horizonte, Brazil, August 10-15 2008. s.l. : s.n., 1 p. Meeting of the Brazilian Phytopathological Society, Belo horizonte, Brésil, 10 August 2008/15 August 2008.

Effects of sucrose and growth regulators on the multiplication and the microtuberization of yams (Dioscorea spp.). Carlier A., Odah K., Filloux Denis, Vernier Philippe, Du Jardin Patrick. 2006. In : 20ème International Congress on Plant Tissue and Cell Culture, 20 octobre 2006, Gembloux, Belgique. s.l. : s.n., 1 p. International Congress on Plant Tissue and Cell Culture. 20, Gembloux, Belgique, 20 October 2006.
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Plantas de inhame en Pernambuco e Paraiba apresentam infecções simples e mista por potyvirus e badnavirus [Abstract and Poster]. Pio-Ribeiro Gilvan, Andrade G.P., Filloux Denis, Vernier Philippe, Melo-Filho P.A., Almeida H.S.M., Xavier A.S.. 2006. In : 39e Congresso Brasileiro de Fitopatologia, 14-18 agosto 2006, Salvador, Brésil. s.l. : s.n., Résumé, 2 p. Congresso Brasileiro de Fitopatologia. 39, Salvador, Brésil, 14 August 2006/18 August 2006.
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Quarantaine de plantes à racines et tubercules pour l'échange international de matériel végétal sain. Filloux Denis, Girard Jean-Claude. 2005. In : 41st Annual Meeting of the Carribean Food Crop Society = 41ème Congrès annuel de la Société Caraïbe pour les Plantes Alimentaires, 10-16 juillet 2005, Gosier. CFCS, Guadeloupe. s.l. : s.n., 1 p. Annual Meeting of the Caribbean Food Crops Society. 41, Gosier, Guadeloupe, 10 July 2005/16 July 2005.
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Motivations et approche technique de la microtubérisation des ignames (Dioscorea sp). Carlier A., Filloux Denis, Vernier Philippe, Odah K., Du Jardin Patrick. 2004. In : Journées Scientifiques de l'AUF, 4-7 octobre 2004, Lomé, Togo. s.l. : s.n., 1 p. Journées Scientifiques de l'AUF, Lomé, Togo, 4 October 2004/7 October 2004.
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Development of microsatellite markers of chloroplastic genome studies in Citrus [S29-10]. Lotfy Samia, Luro François, Froelicher Yann, Risterucci Ange-Marie, Filloux Denis, Ollitrault Patrick. 2003. In : 7th International Congress of Plant Molecular Biology, ISPMB 2003, Barcelona (Spain), June 23-28. Book of abstracts. ISPMB. Barcelone : ISPMB Office, Résumé, p. 408. International Congress of Plant Molecular Biology. 7, Barcelone, Espagne, 23 June 2003/28 June 2003.

Paper without proceedings

Deciphering plant virus ecology and evolution using metagenomics-based approaches. Filloux Denis, Lefeuvre Pierre, Lett Jean-Michel, Varsani Arvind, Harkins Gordon William, Malmstrom Carolyn M., Martin Darren Patrick, Roumagnac Philippe. 2019. . State College : s.n., Résumé, 1 p. International Congress on Virus Evolution. 10, State College, États-Unis, 7 March 2019/9 March 2019.
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Description of the diversity and structure of mastrevirus communities at the scale of an agrosystem in La Réunion based on a metagenomic approach. Claverie Sohini, Scussel Sarah, Hoareau Marie Murielle, Hascoat Jérémy, Lebreton Gérard, Grondin Martial, Filloux Denis, Roumagnac Philippe, Martin Darren Patrick, Lett Jean-Michel, Lefeuvre Pierre. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, p. 48. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 January 2019/31 January 2019.
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Diversity and structure of Poaceae-infecting mastreviruses communities on Reunion Island using a viral metagenomics-based approach. Claverie Sohini, Scussel Sarah, Hoareau Murielle, Hascoat Jérémy, Lebreton Gérard, Grondin Martial, Filloux Denis, Roumagnac Philippe, Martin Darren Patrick, Lett Jean-Michel, Lefeuvre Pierre. 2019. In : Programme and abstracts of the 9th International Germinivirus Symposium (IGS 2019) and the 7th ssDNA Comparative virology workshop. University of California. Davis : University of California, Résumé, p. 44. International Geminivirus Symposium. 9, Davis, États-Unis, 9 November 2019/13 November 2019.
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Effect of species composition on virome diversity in various ecosystemic communities of Poaceae. Maclot François, Candresse Thierry, Filloux Denis, Roumagnac Philippe, Massart Sébastien. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, p. 18. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 January 2019/31 January 2019.
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Exploring within-host diversity of plant viruses in rice agrosystems using two high-throughput sequencing strategies. Poulicard Nils, Dereeper Alexis, Pinel-Galzi Agnès, Fernandez Emmanuel, Julian Charlotte, Hubert Judith, Filloux Denis, Fargette Denis, Roumagnac Philippe, Hébrard Eugénie. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, p. 34. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 January 2019/31 January 2019.
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Geographical distribution and diversity of Plantago Lanceolata latent virus, a member of the Capulavirus genus. Filloux Denis, Galzi Serge, Julian Charlotte, Ryckebusch Faustine, Granier Martine, Peterschmitt Michel, Davoodi Zohreh, Susi Hanna, Laine Anna-Liisa, Roumagnac Philippe. 2019. In : Programme and abstracts of the 9th International Germinivirus Symposium (IGS 2019) and the 7th ssDNA Comparative virology workshop. University of California. Davis : University of California, Résumé, p. 71. International Geminivirus Symposium. 9, Davis, États-Unis, 9 November 2019/13 November 2019.
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Hidden diversity of endogenous geminiviral sequences across plant genomes and transcriptomes. Sharma Vikas, Roumagnac Philippe, Filloux Denis, Lefeuvre Pierre, Teycheney Pierre-Yves, Martin Darren Patrick, Maumus Florian. 2019. In : Programme and abstracts of the 9th International Germinivirus Symposium (IGS 2019) and the 7th ssDNA Comparative virology workshop. University of California. Davis : University of California, Résumé, p. 58. International Geminivirus Symposium. 9, Davis, États-Unis, 9 November 2019/13 November 2019.
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Nanopore-based detection and characterization of yam viruses. Filloux Denis, Fernandez Emmanuel, Loire Etienne, Claude Lisa, Galzi Serge, Candresse Thierry, Winter Stephan, Jeeva M.L., Makeshkumar T., Martin Darren Patrick, Roumagnac Philippe. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, p. 53. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 January 2019/31 January 2019.
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Night at the museum: Contribution of small RNA from historical herbarium specimens in the reconstruction of evolutionary histories of geminiviruses. Lett Jean-Michel, Scussel Sarah, Campos Paola, Filloux Denis, Roumagnac Philippe, Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe, Martin Darren Patrick, Lefeuvre Pierre, Rieux Adrien, Becker Nathalie. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, p. 52. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 January 2019/31 January 2019.
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Night at the museum: Contribution of small RNA from historical herbarium specimens in the reconstruction of evolutionary histories of geminiviruses. Rieux Adrien, Campos Paola, Scussel Sarah, Duvermy Arnaud, Filloux Denis, Roumagnac Philippe, Martin Darren Patrick, Becker Nathalie, Lett Jean-Michel. 2019. In : Programme and abstracts of the 9th International Germinivirus Symposium (IGS 2019) and the 7th ssDNA Comparative virology workshop. University of California. Davis : University of California, Résumé, p. 36. International Geminivirus Symposium. 9, Davis, États-Unis, 9 November 2019/13 November 2019.
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Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale. O13. Bernardo Pauline, Charles-Dominique Tristan, Barakat Mohamed, Ortet Philippe, Fernandez Emmanuel, Filloux Denis, Hartnady Penelope, Rebelo Tony A., Cousins Stephen, Mesleard François, Cohez Damien, Yaverkovski Nicole, Varsani Arvind, Harkins Gordon William, Peterschmitt Michel, Malmstrom Carolyn, Martin Darren Patrick, Roumagnac Philippe. 2018. In : Book of abstract Pathobiome 2018. INRA. Ajaccio : INRA, Résumé, pp. 25-26. Pathobiome, Ajaccio, France, 18 March 2018/20 March 2018.
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Étude de la diversité des virus des plantes conservés dans les herbiers. Delattre R., Julian Charlotte, Fernandez Emmanuel, Filloux Denis, Roumagnac Philippe. 2018. In : Actes de conférences : Le printemps de Baillarguet. CIRAD. Montpellier : CIRAD, Résumé, p. 12. Le printemps de Baillarguet 2018. 10, Montpellier, 28 May 2018/29 May 2018.
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Deciphering plant-associated viruses at the agroecosystem scale using geometagenomics. Charles-Dominique Tristan, Fernandez Emmanuel, Filloux Denis, Ortet Philippe, Barakat Mohamed, Rebelo Tony A., Varsani Arvind, Malmstrom Carolyn M., Martin Darren Patrick, Roumagnac Philippe. 2016. . University of Helsinki. Helsinki : University of Helsinki, Résumé, 1 p. International Meeting on Wild Plant Pathosystems. 2, Helsinki, Finlande, 29 August 2016/31 August 2016.
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Improved diagnosis tools for the detection of yam virus in the sanitation process and unveil virus-free accessions for producers' exchange. Gomez Rose-Marie, Gélabale Suzia, Filloux Denis, Gamiette Franciane, Pavis Claudie, Umber Marie. 2016. In : Proceedings of the 52nd annual meeting of the Caribbean Food Crops Society: “Engineering Ecological Modernization of Agriculture / Exploring the Potential of Tropical Biological Resources for Innovation / Towards a Bio-Economic Development of Caribbean Co. Naves Michel (ed.), Angeon Valérie (ed.), Merlot Bérengère (ed.), Fahrasmane Louis (ed.), Diman Jean Louis (ed.), Labbé Patrick (ed.), Traffond Patricia (ed.), Colon Wilfredo (ed.), Ozier Lafontaine Harry (ed.). INRA. Le Gosier : Caribbean Food Crops Society, pp. 116-117. Caribbean food crops society annual meeting. 52, Le Gosier, Guadeloupe, 10 July 2016/16 July 2016.
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Improved diagnostic tools for the detection badnaviruses in yams unveil the existence of endogenous sequences of extant badnavirus species in yams. [O.36]. Umber Marie, Filloux Denis, Muller Emmanuelle, Laboureau Nathalie, Galzi Serge, Gomez Rose-Marie, Roumagnac Philippe, Caruana Marie-Line, Pavis Claudie, Teycheney Pierre-Yves. 2015. In : 15èmes Rencontres de Virologie Végétale, Aussois, France, 18-22 janvier 2015. CIRAD ; IRD. s.l. : s.n., Résumé, p. 51. Rencontres de virologie végétale. 15, Aussois, France, 18 January 2015/22 January 2015.
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Viral treasure hunt in European outermost territories: how metagenomics boosts the discovery of novel viral species in tropical and sub-tropical crops germplasm. [O.18]. Teycheney Pierre-Yves, Bandou Eric, Gomez Rose-Marie, Lange David, Pavis Claudie, Umber Marie, Acina Manbole Isabelle Nina, Bonheur Lydiane, Daugrois Jean-Heinrich, Fernandez Emmanuel, Filloux Denis, Julian Charlotte, Roumagnac Philippe, Grisoni Michel, Pierret Alycia, Rubington Margot, Candresse Thierry, Contreras Sandy, Faure Chantal, Marais Armelle, Theil Sébastien, Da Câmara Machado Artur, Mendonça Duarte, Pinheiro de Carvalho Miguel A.A., Silva Emanuel. 2015. In : 15èmes Rencontres de Virologie Végétale, Aussois, France, 18-22 janvier 2015. CIRAD ; IRD. s.l. : s.n., Résumé, p. 30. Rencontres de virologie végétale. 15, Aussois, France, 18 January 2015/22 January 2015.
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Assessment and characterization of the genetic diversity of viruses infecting cultivated yams (Dioscorea spp.) in Haïti. Galzi Serge, Scutt Ricot, Prophète P., Roumagnac Philippe, Filloux Denis. 2013. In : 14èmes Rencontres de virologie végétale (RVV 2013) : Aussois, France, 13-17 janvier 2013. Marais Armelle (ed.), Revers Frédéric (ed.). SFP, INRA. Paris : SFP, Résumé, p. 70. Rencontres de Virologie Végétale. 14, Aussois, France, 13 January 2013/17 January 2013.
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Cartographie des virus de l'igname en Haïti : risques pour la production et recommandations. Filloux Denis, Galzi Serge, Scutt Ricot, Prophete Emmanuel, Roumagnac Philippe. 2013. In : Conférence finale du projet DEVAG Réseau caribéen pour le développement de systèmes horticoles agroécologique. CIRAD. s.l. : s.n., Résumé, 1 p. Conférence finale du projet DEVAG, Schoelcher, Martinique, 5 December 2013.
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Characterization of new endogenous geminiviral elements in yam (Dioscorea spp.) genomes. Filloux Denis, Koohapitagtam M., Golden Michael, Julian Charlotte, Galzi Serge, Rodier-Goud Marguerite, D'Hont Angélique, Vernerey Marie-Stéphanie, Wilkin P., Peterschmitt Michel, Martin Darren Patrick, Roumagnac Philippe. 2013. In : 14èmes Rencontres de virologie végétale (RVV 2013) : Aussois, France, 13-17 janvier 2013. Marais Armelle (ed.), Revers Frédéric (ed.). SFP, INRA. Paris : SFP, Résumé, p. 5. Rencontres de Virologie Végétale. 14, Aussois, France, 13 January 2013/17 January 2013.
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Characterization of novel, highly divergent geminiviruses and insights into the evolutionary history of geminiviruses. Bernardo Pauline, Ortet Philippe, Barakat Mohamed, Rebelo Anthony, Cousins Stephen, Fernandez Emmanuel, Mesleard François, Peterschmitt Michel, Filloux Denis, Varsani Arvind, Martin Darren Patrick, Roumagnac Philippe. 2013. In : 7th International Geminvirus Symposium and 5th International ssDNA Comparative Virology Workshop, Hangzhou, China, November 3-9, 2013. s.l. : s.n., Résumé, 1 p. International Geminvirus Symposium. 7, Hangzhou, Chine, 3 November 2013/9 November 2013.
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Diverse circular single-stranded DNA viruses discovered from research greenhouses and agro-ecosystems. Fort Guillaume, Bernardo Pauline, Fernandez Emmanuel, Galzi Serge, Filloux Denis, Roumagnac Philippe. 2013. In : 14èmes Rencontres de virologie végétale (RVV 2013) : Aussois, France, 13-17 janvier 2013. Marais Armelle (ed.), Revers Frédéric (ed.). SFP, INRA. Paris : SFP, Résumé, p. 66. Rencontres de Virologie Végétale. 14, Aussois, France, 13 January 2013/17 January 2013.
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Geo-metagenomics: deciphering the spatial biodiversity of ssDNA viruses associated with Western Cape and Camargue agroecosystems. Bernardo Pauline, Ortet Philippe, Barakat Mohamed, Rebelo Anthony, Cousins Stephen, Fernandez Emmanuel, Mesleard François, Peterschmitt Michel, Filloux Denis, Varsani Arvind, Martin Darren Patrick, Roumagnac Philippe. 2013. In : 7th International Geminvirus Symposium and 5th International ssDNA Comparative Virology Workshop, Hangzhou, China, November 3-9, 2013. s.l. : s.n., Résumé, 1 p. International Geminvirus Symposium. 7, Hangzhou, Chine, 3 November 2013/9 November 2013.
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Improvement of three nucleic acid isolation protocols for an overall diagnosis of viruses on six vegetative propagated plants. Julian Charlotte, Bernardo Pauline, Fernandez Emmanuel, Galzi Serge, Grisoni Michel, Da Silva Mendoça D.M., Pavis Claudie, Roumagnac Philippe, Filloux Denis. 2013. In : 14èmes Rencontres de virologie végétale (RVV 2013) : Aussois, France, 13-17 janvier 2013. Marais Armelle (ed.), Revers Frédéric (ed.). SFP, INRA. Paris : SFP, Résumé, p. 75. Rencontres de Virologie Végétale. 14, Aussois, France, 13 January 2013/17 January 2013.
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Pathology and viral metagenomics, a recent history. Bernardo Pauline, Fernandez Emmanuel, Filloux Denis, Albina Emmanuel, Eloit Marc, Roumagnac Philippe. 2013. In : 14èmes Rencontres de virologie végétale (RVV 2013) : Aussois, France, 13-17 janvier 2013. Marais Armelle (ed.), Revers Frédéric (ed.). SFP, INRA. Paris : SFP, Résumé, p. 20. Rencontres de Virologie Végétale. 14, Aussois, France, 13 January 2013/17 January 2013.
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Découverte et analyse de séquences de type Geminiviridae intégrées au génome des Dioscoreaceae : une aide pour la phylogénie ? Filloux Denis. 2011. In : Workshop 2011 du Réseau Evolution Virale (REV), 6-7 octobre 2011, Montpellier, France. Rémy Froissart, Samuel Alain. s.l. : s.n., Résumé, p. 12. Workshop 2011 du Réseau Evolution Virale (REV), Montpellier, France, 6 October 2011/7 October 2011.
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Exploration de la diversité virale des ignames (Dioscorea spp.) cultivées de Madagascar et implications pour le contrôle de l'état sanitaire des plantations. Filloux Denis, Rajaonah Mamy Tiana, Jeannoda Vololoniaina. 2011. In : Atelier thématique Agronomie et écosystème Programme CORUS et Aires-Sud, Antananarivo, Madagascar, 21-26 mars 2011. s.l. : s.n., 12 p. Atelier thématique Agronomie et écosystème, Antananarivo, Madagascar, 21 March 2011/26 March 2011.
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Indexing and elimination of viruses infecting yams (Dioscorea spp.) for the safe movement of germplasm. Filloux Denis, Girard Jean-Claude. 2006. In : Roots and tubers for sustainable development, issues and strategies : Proceedings of the 14th triennal Symposium, Thiruvananthapuram Kerala, India, 20-26 november 2006. International Society for Tropical Root Crop. s.l. : s.n., 13 p. ISTRC Triennal Symposium. 14, Thiruvananthapuram, Inde, 20 November 2006/26 November 2006.
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La cytométrie en flux. Une technologie de pointe au service du développement. Filloux Denis, Jenny Christophe, Ollitrault Patrick, Totté Philippe. 2000. In : Journée la recherche s'affiche, Pointe-à-Pitre, Guadeloupe, 16 juin 2000. UAG. s.l. : s.n., 1 p. Journée la recherche s'affiche, Guadeloupe, 16 June 2000.

La culture d'anthères de riz au CIRAD : bilan actuel des recherches et de l'utilisation des lignées HD. Filloux Denis, Courtois Brigitte, Guiderdoni Emmanuel. 1996. In : Participation au colloque "haploïdie" du 21 juin 1996 organisé à l'INRA de Versailles. Rapport de mission, 19-22. 06/96/Filloux D. Petit-Bourg : CIRAD-CA, 1 p. Congrès IAPTC-France haplométhodes, Versailles, France, 21 June 1996.

Anther culture for rice improvement at CIRAD-CA. Filloux Denis, Courtois Brigitte, Guiderdoni Emmanuel. 1995. In : Symposium CIRAD/CATIE amélioration génétique et développement des cultures tropicales, 20 au 29 novembre 1995, Turrialba, Costa Rica = Simposio CIRAD/CATIE mejoramiento genético y desarrollo de los cultivos tropicales, 20 al 29 de Noviembre 1995, Turrialba, Costa Rica. Vasquez Nelly, Escalant Jean-Vincent. CATIE, CIRAD. Turrialba : CATIE, pp. 43-48. Simposio sobre Mejoramiento genético y desarrollo de los cultivos tropicales, Turrialba, Costa Rica, 20 November 1995/29 November 1995.

Rice anther culture at CIRAD-CA. Filloux Denis, Courtois Brigitte, Guiderdoni Emmanuel. 1994. In : International upland rice breeders workshop. Scientific papers. CIRAD-CA. Montpellier : CIRAD-CA, pp. 1-3. International upland rice breeders workshop, Montpellier, France, 6 September 1993/10 September 1993.

Disertation

Analyse de la diversité génétique d'une population restauratrice de fertilité utilisée pour la création de variétés hybrides de riz (Oryza sativa L.). Filloux Denis. 2001. Montpellier : UM2, 17 p. Mémoire DEA : Ressources phytogénétiques et intéractions biologiques : Université Montpellier 2
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Technical and research document

L'amélioration variétale du riz en France méditerranéenne. Rapport d'activités 2000. Clément Guy, Louvel Didier, Séguy Jean-Louis, Lambertin Robert, Filloux Denis, Guiderdoni Emmanuel, Taillebois James E.. 2001. Arles : Centre français du riz, 217 p.

L'amélioration variétale du riz en France méditerranéenne, commission semences. Rapport de synthèse 1997. Clément Guy, Séguy Jean-Louis, Lambertin Robert, Filloux Denis, Guiderdoni Emmanuel, Taillebois James E.. 1998. Arles : CIRAD-CA, 1-10

L'amélioration variétale du riz en France méditerranéenne. Rapport d'activités 1998. Rapport de synthèse 1998. Clément Guy, Séguy Lucien, Lambertin Robert, Filloux Denis, Guiderdoni Emmanuel, Taillebois James E.. 1998. Montpellier : CIRAD-CA, 9 p.
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L'haplométhode appliquée aux riz méditerranéens. Station de Roujol, Guadeloupe. Mas d'Adrien, Camargue. Campagne 1997. Filloux Denis, Clément Guy, Séguy Lucien, Lambertin Robert. 1998. Arles : CIRAD-CA, 165-193

Participation au congrès "Anther and Pollen : from Biology to Biotechnology" du 09 au 10 avril 1998 organisé à Reims (France). Rapport de mission 07-14/04/98. Filloux Denis. 1998. Petit-Bourg : CIRAD-CA, 64 p. Anther and pollen: from biology to biotechnology, Reims, France, 9 April 1998/10 April 1998.

L'amélioration variétale du riz en France méditeranéenne. Rapport d'activité 1997. Clément Guy, Séguy Lucien, Lambertin Robert, Filloux Denis, Guiderdoni Emmanuel, Taillebois James E.. 1997. Arles : CFR, 229 p.

L'amélioration variétale du riz en France méditerranéenne. Rapport d'activités 1996. Clément Guy, Séguy Jean-Louis, Lambertin Robert, Filloux Denis, Guiderdoni Emmanuel, Taillebois James E.. 1997. Arles : CIRAD-CA, 203 p.

L'amélioration variétale du riz en France méditerranéenne. Commission semences. Rapport d'activité 1995. Clément Guy, Séguy Jean-Louis, Lambertin Robert, Filloux Denis, Guiderdoni Emmanuel, Taillebois James E.. 1996. Arles : CIRAD-CA, 228 p.

Androgenèse du riz. Rapport analytique. Campagne 1992 et 1993. Filloux Denis. 1995. Petit-Bourg : CIRAD-CA, 20 p.

L'amélioration variétale du riz en France méditerranéenne. Commission semences. Rapport d'activité 1994. Clément Guy, Séguy Jean-Louis, Lambertin Robert, Filloux Denis, Guiderdoni Emmanuel, Taillebois James E.. 1995. Arles : CFR, 229 p.

L'amélioration variétale du riz. Rizière expérimentale du Mas d'Adrien. Rapport de synthèse 1994. Clément Guy, Séguy Jean-Louis, Lambertin Robert, Filloux Denis, Guiderdoni Emmanuel, Taillebois James E.. 1995. Montpellier : CIRAD-CA, 13 p.

L'amélioration variétale du riz : rizière expérimentale du Mas d'Adrien. Rapport de synthèse 1993. Clément Guy, Séguy Jean-Louis, Lambertin Robert, Filloux Denis, Guiderdoni Emmanuel, Taillebois James E.. 1994. Montpellier : CIRAD-CA, 11 p.

L'amélioration variétale du riz en France Méditerranéenne. Commission semences. Rapport d'activités 1993. Clément Guy, Séguy Jean-Louis, Lambertin Robert, Filloux Denis, Guiderdoni Emmanuel, Taillebois James E.. 1994. Arles : CFR, 215 p.

L'amélioration variétale du riz. Rizière exprérimentale du mas d'Adrien. Rapport de synthèse 1993. Clément Guy, Séguy Jean-Louis, Lambertin Robert, Filloux Denis, Guiderdoni Emmanuel, Taillebois James E.. 1993. Montpellier : CIRAD-CA, 11 p.

Mission report

Compte-rendu de mission en Amérique Latine du 19 février au 11 mars 1995. Filloux Denis. 1995. Petit-Bourg : CIRAD-CA, 14 p.

Section of report

L'haplométhode appliquée aux riz méditerranéens. Station de Roujol, Guadeloupe. Mas d'Adrien, Camargue. Filloux Denis, Louvel Didier, Clément Guy, Séguy Jean-Louis, Lambertin Robert. 2001. In : L'amélioration variétale du riz en France méditerranéenne. Rapport d'activités 2000. Clément Guy, Louvel Didier, Séguy Jean-Louis, Lambertin Robert, Filloux Denis, Guiderdoni Emmanuel, Taillebois James E.. CFR, INRA, CIRAD-CA, UCASP. Arles : Centre français du riz, pp. 170-181.

L'amélioration variétale du riz en France méditerranéenne : rapport d'activités 1999. Clément Guy, Louvel Didier, Séguy Jean-Louis, Lambertin Robert, Filloux Denis, Guiderdoni Emmanuel, Taillebois James E.. 2000. In : L'amélioration variétale du riz en France méditerranéenne : rapport d'activités 1999. CFR, INRA, CIRAD-CA. Arles : Centre français du riz, pp. 12-21.

L'amélioration variétale du riz en France méditerranéenne : rapport de synthèse 1999. Clément Guy, Louvel Didier, Séguy Jean-Louis, Lambertin Robert, Filloux Denis, Guiderdoni Emmanuel, Taillebois James E.. 2000. In : L'amélioration variétale du riz en France méditerranéenne : rapport d'activités 1999. CFR, INRA, CIRAD-CA. Arles : Centre français du riz, pp. 1-10.

L'haplométhode appliquée aux riz méditérranéens, station de Roujol, Guadeloupe, Mas d'Adrien, Camargue. Filloux Denis, Clément Guy, Séguy Jean-Louis, Lambertin Robert. 2000. In : L'amélioration variétale du riz en France méditerranéenne : rapport d'activités 1999. CFR, INRA, CIRAD-CA. Arles : Centre français du riz, pp. 136-157.

Compte-rendu final d'ATP n.24/93. Mise au point et perfectionnement de techniques de production de plantes haploides et haplodiploïdes. Riz. Filloux Denis, Guiderdoni Emmanuel. 1997. In : Réunion MICAP du 3 avril 1997. Présentation finale de l'ATP/CIRAD : mise au point et perfectionnement de techniques de production de plantes haploïdes et haplodiploïdes. Bakry Frédéric. CIRAD-FLHOR. Montpellier : CIRAD-FLHOR, pp. 21-41.

Appui à l'amélioration variétale du riz : ressources génétiques, hybridations et androgenèse. Filloux Denis. 1995. In : Rapport annuel : Guadeloupe 1995. CIRAD. CIRAD. Capesterre-Belle-Eau : CIRAD, 6 p.

This list was generated on Sun Nov 29 10:38:11 2020 CET.