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Number of items: 27.

Journal article

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Coexistence of multiple endemic and pandemic lineages of the rice blast pathogen. Gladieux Pierre, Ravel Sébastien, Rieux Adrien, Cros-Arteil Sandrine, Adreit Henri, Milazzo Joëlle, Thierry Maud, Fournier Elisabeth, Terauchi Ryohei, Tharreau Didier. 2018. Mbio, 9 (2):e01806, 17 p.
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Gene flow between divergent cereal- and grass-specific lineages of the rice blast fungus Magnaporthe oryzae. Gladieux Pierre, Condon Bradford, Ravel Sébastien, Soanes Darren M., Maciel João Leodato Nunes, NhaniJúnior Antonio, Chen Li, Terauchi Ryohei, Lebrun Marc-Henri, Tharreau Didier, Mitchell Thomas K., Pedley Kerry F., Valent Barbara, Talbot Nicholas J., Farman Mark, Fournier Elisabeth. 2018. Mbio, 9 (1):e01219, 17 p.
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Next generation sequencing elucidates cacao badnavirus diversity and reveals the existence of more than ten viral species. Muller Emmanuelle, Ravel Sébastien, Agret Clément, Abrokwah Francis, Dzahini-Obiatey Henry, Galyuon I., Kouakou K., Jeyaseelan E.C., Allainguillaume Joel, Wetten Andrew. 2018. Virus Research, 244 : pp. 235-251.
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Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae. Islam M. Totazzal, Croll Daniel, Gladieux Pierre, Soanes Darren M., Persoons Antoine, Bhattacharjee Pallab, Hossain Md. Shaid, Gupta Dipali Rani, Rahman Md Mahbubur, Mahboob M. Golam, Cook Nicola, Salam Moin U., Surovy Musrat Zahan, Sancho Vanessa Bueno, Maciel João Leodato Nunes, NhaniJúnior Antonio, Castroagudín Vanina Lilián, de Assis Reges Juliana T., Ceresini Paulo Cezar, Ravel Sébastien, Kellner Ronny, Fournier Elisabeth, Tharreau Didier, Lebrun Marc-Henri, McDonald Bruce A., Stitt Timothy, Swan Daniel, Talbot Nicholas J., Saunders Diane G.O., Win Joe, Kamoun Sophien. 2016. BMC Biology, 14 (84), 11 p.
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The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Guignon Valentin, Hueber Yann, Rouard Mathieu, Bocs Stéphanie, Couvin David, De Lamotte Frédéric, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Gkanogiannis Anestis, Hamelin Chantal, Larivière Delphine, Martin Guillaume, Ortega Enrique, Pitollat Bertrand, Pointet Stéphanie, Ruiz Manuel, Gautier Sarah, Summo Marilyne, This Dominique, Ravel Sébastien, Larmande Pierre, Monat Cécile, Sabot François, Tando Ndomassi, Tranchant-Dubreuil Christine, Sempere Guilhem, Dereeper Alexis. 2016. Current Plant Biology, 7-8 : pp. 6-9.
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TOGGLE: toolbox for generic NGS analyses. Monat Cécile, Tranchant-Dubreuil Christine, Kougbeadjo Ayite, Farcy Cédric, Ortega-Abboud Enrique, Amanzougarene Souhila, Ravel Sébastien, Agbessi Mawussé, Orjuela-Bouniol Julie, Summo Marilyne, Sabot François. 2015. BMC Bioinformatics, 16 (374) : pp. 1-8.
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The coffee genome hub: a resource for coffee genomes. Dereeper Alexis, Bocs Stéphanie, Rouard Mathieu, Guignon Valentin, Ravel Sébastien, Tranchant-Dubreuil Christine, Poncet Valérie, Garsmeur Olivier, Lashermes Philippe, Droc Gaëtan. 2015. Nucleic Acids Research, 43 (D1), D1028-D1035
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Population genomics of eusocial insects: the costs of a vertebrate-like effective population size. Romiguier J., Lourenco Joao M., Gayral Philippe, Faivre Nicolas, Weinert Lucy Anne, Ravel Sébastien, Ballenghien Marion, Cahais Vincent, Bernard Aurélien, Loire Etienne, Keller Laurent, Galtier Nicolas. 2014. Journal of Evolutionary Biology, 27 (3) : pp. 593-603.
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Guest paper

The South Green Bioinformatics platform, a comprehensive resource for crop genomics. Ruiz Manuel, Dereeper Alexis, Droc Gaëtan, Sarah Gautier, Tranchant-Dubreuil Christine, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, De Lamotte Frédéric, Larmande Pierre, Sabot François, Sempere Guilhem, Summo Marilyne, Pitollat Bertrand, This Dominique, Bocs Stéphanie, Hueber Yann, El Hassouni Nordine, Martin Guillaume, Gkanogiannis Anestis, Ravel Sébastien, Monat Cécile, Tando Ndomassi, Rouard Mathieu. 2017. In : Proceedings X-Meeting 2017. s.l. : s.n., 1 p. International Conference of the AB3. 13, São Pedro, Brésil, 4 October 2017/6 October 2017.
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Paper with proceedings

South Green, une plateforme de bioinformatique tournée vers l'agriculture dans les pays du sud. Ravel Sébastien, Bocs Stéphanie, Brousseau Louise, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, Larmande Pierre, Mahé Frédéric, Martin Guillaume, Orjuela-Bouniol Julie, Pitollat Bertrand, Rouard Mathieu, Ruiz Manuel, Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, Tando Ndomassi, Tranchant-Dubreuil Christine. 2018. In : JOBIM 2018 Abstracts. SFBI, GdR BiM, IFB, AMU, INSERM, CNRS. Marseille : SFBI, pp. 418-420. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2018), Marseille, 3 July 2018/6 July 2018.
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TOGGLE-3: A Framework to Build Quickly Pipelines and to Perform Large-Scale NGS Analysis. [P0469]. Tranchant-Dubreuil Christine, Ravel Sébastien, Monat Cécile, Helou Laura, Diallo Abdoulaye, Sarah Gautier, Orjuela-Bouniol Julie, Sabot François. 2017. In : Proceedings Plant and Animal Genome XXV Conference. San Diego : PAG, 1 p. Plant and Animal Genome Conference. 25, San Diego, États-Unis, 14 January 2017/18 January 2017.
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Analyse du transcriptome du champignon Magnaporthe oryzae et d'une bactérie du genre Burkholderia mis en confrontation in vitro. Mohamed Abdillah, Fournier Elisabeth, Cros-Arteil Sandrine, Ravel Sébastien. 2016. In : Actes du Printemps de Baillarguet. 8ème édition. Berthelot Edwige (ed.), Diagne Christophe (ed.), Hammami Pachka (ed.), Lesieur Vincent (ed.), Lies Adrien (ed.), Rombaut Antoine (ed.). INRA, EBCL, Ecole Doctorale GAIA, CeMEB, CIRAD, IRD, Montpellier SupAgro. Montferrier : INRA-CIRAD, Résumé, p. 58. Printemps de Baillarguet. 8, Montferrier-sur-Lez, France, 2 June 2016/3 June 2016.
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Association genetics to identify genes involved in aggressiveness traits in the plant pathogenic fungus Mycosphaerella fijiensis. Picard Léa, Carlier Jean, Ravel Sébastien. 2016. In : Actes du Printemps de Baillarguet. 8ème édition. Berthelot Edwige (ed.), Diagne Christophe (ed.), Hammami Pachka (ed.), Lesieur Vincent (ed.), Lies Adrien (ed.), Rombaut Antoine (ed.). INRA, EBCL, Ecole Doctorale GAIA, CeMEB, CIRAD, IRD, Montpellier SupAgro. Montferrier : INRA-CIRAD, Résumé, p. 52. Printemps de Baillarguet. 8, Montferrier-sur-Lez, France, 2 June 2016/3 June 2016.
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South Green bioinformatics platform: Update 2015. Armero A., Baurens Franc-Christophe, Bocs Stéphanie, Breil A., De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Garsmeur Olivier, Guignon Valentin, Hamelin Chantal, Hueber Yann, Kougbeadjo Ayite, Larivière Delphine, Larmande Pierre, Lorenzo Jonathan, Martin Guillaume, Monat Cécile, Ndomassi T., Ortega Abboud Enrique, Pitollat Bertrand, Ravel Sébastien, Ranwez Vincent, Rouard Mathieu, Ruiz E., Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, This Dominique, Tranchant-Dubreuil Christine, Vallier Félix. 2015. In : Plant Genomics Congress. Global Engage. Londres : Global Engage, p. 51. Plant Genomics Congress. 3, Londres, Royaume-Uni, 11 May 2015/12 May 2015.
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Poster

The South Green Genome Hubs. Droc Gaëtan, Argout Xavier, Bocs Stéphanie, Comte Aurore, Dereeper Alexis, Dufayard Jean François, Garsmeur Olivier, Gkanogiannis Anestis, Guignon Valentin, Hamelin Chantal, Lopez David, Oubda Nicolas, Martin Guillaume, Ravel Sébastien, Ruiz Manuel, Summo Marilyne, Thomas Coline, Tranchant-Dubreuil Christine, Rouard Mathieu. 2020. . SFBI, IFB, GDR-BIM. Montpellier : SFBI, 1 p. Journées ouvertes de biologie, informatique et mathématique (JOBIM 2020), Montpellier, France, 30 June 2020/3 July 2020.
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South Green bioinformatic resources for tropical and Mediterranean crops. Rouard Mathieu, Bocs Stéphanie, Breton Catherine, Comte Aurore, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, Larmande Pierre, Lopez David, Mahe Frédéric, Martin Guillaume, Orjuela-Bouniol Julie, Pitollat Bertrand, Ravel Sébastien, Ruiz Manuel, Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, Tando Ndomassi, Tranchant-Dubreuil Christine. 2020. . SFBI, IFB, GDR-BIM. Montpellier : SFBI, 1 p. Journées ouvertes de biologie, informatique et mathématique (JOBIM 2020). 20, Montpellier, France, 30 June 2020/3 July 2020.
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Epidemiosurveillance in the French West Indies of genotypes involved in the adaptation to varietal resistances in the fungus Pseudocercospora fijiensis causing the black leaf streak disease of banana. Dumartinet Thomas, Ravel Sébastien, Bonnot François, Roussel Véronique, Lubin Nadia, Chilin-Charles Yolande, Trouspance Yohan Emmanuel, Aguayo Jaime, Abadie Catherine, Carlier Jean. 2019. In : Abstract book of the 30th Fungal Genetics Conference. Genetics society of America. Pacific Grove : Genetics society of America, Résumé, p. 182. Fungal Genetics Conference. 30, Pacific Grove, CA, États-Unis, 12 March 2019/17 March 2019.
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Epidemiosurveillance in the French West Indies of genotypes involved in the adaptation to varietal resistances in the fungus Pseudocercospora fijiensis causing the black leaf streak disease of banana. Dumartinet Thomas, Picard Léa, Ravel Sébastien, Bonnot François, Zapater Marie-Françoise, Bieysse Daniel, Roussel Véronique, Habas Rémy, Lubin Nadia, Chilin-Charles Yolande, Trouspance Yohan Emmanuel, Aguayo Jaime, Abadie Catherine, Carlier Jean. 2018. . Aussois : Société française de phytopathologie, 1 poster Journées Jean Chevaugeon, Rencontres de phytopathologie-mycologie. 12, Aussois, France, 15 January 2018/19 January 2018.
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South Green bioinformatics platform : Plateforme collaborative de bioinformatique verte héraultaise. Bocs Stéphanie, Couvin David, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Gkanogiannis Anestis, Guignon Valentin, Hamelin Chantal, Hueber Yann, Larivière Delphine, Larmande Pierre, Martin Guillaume, Monat Cécile, Ortega Abboud Enrique, Pitollat Bertrand, Pointet Stéphanie, Ravel Sébastien, Rouard Mathieu, This Patrice, Tranchant-Dubreuil Christine. 2017. . Montpellier : CIRAD, 1 poster Amphithéâtre "Patrimoine Numérique Scientifique", Montpellier, France, 20 February 2017/20 February 2017.
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Incipient speciation in the rice blast fungus. Thierry Maud, Ravel Sébastien, Cros-Arteil Sandrine, Adreit Henri, Milazzo Joëlle, Fournier Elisabeth, Loos Renaud, Gladieux Pierre, Tharreau Didier. 2015. In : Book of abstract of the 28th Fungal Genetics Conference. Genetics society of America. Pacific Grove : Genetics society of America, Résumé, pp. 184-185. Fungal Genetics Conference. 28, Pacific Grove, États-Unis, 17 March 2015/22 March 2015.
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Molecular evolution of MAX effectors in the rice blast fungus Pyricularia oryzae. Charriat F., Ravel Sébastien, Gracy Jérôme, Cros-Arteil Sandrine, Fournier Elisabeth, Kroj Thomas, Gladieux Pierre. 2015. In : Book of abstract of the 28th Fungal Genetics Conference. Genetics society of America. Pacific Grove : Genetics society of America, Résumé, p. 110. Fungal Genetics Conference. 28, Pacific Grove, États-Unis, 17 March 2015/22 March 2015.
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Paper without proceedings

Gene copy number variation impacts on gene expression in a multipartite virus. Gallet Romain, Di Mattia Jeremy, Ravel Sébastien, Vitalis Renaud, Michalakis Yannis, Blanc Stéphane. 2019. In : Programme and abstracts of the 9th International Germinivirus Symposium (IGS 2019) and the 7th ssDNA Comparative virology workshop. University of California. Davis : University of California, Résumé, p. 86. International Geminivirus Symposium. 9, Davis, États-Unis, 9 November 2019/13 November 2019.
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Epidémiosurveillance dans les Antilles de génotypes impliqués dans l'adaptation à des résistances variétales chez le champignon Pseudocercospora fijiensis causant la maladie des raies noires du bananier. Dumartinet Thomas, Picard Léa, Ravel Sébastien, Bonnot François, Zapater Marie-Françoise, Bieysse Daniel, Rousse Véronique, Habas Rémy, Abadie Catherine, Aguayo Jaime, Carlier Jean. 2018. In : Actes de conférences : Le printemps de Baillarguet. CIRAD. Montpellier : CIRAD, Résumé, p. 29. Le printemps de Baillarguet 2018. 10, Montpellier, 28 May 2018/29 May 2018.
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Histoire des populations et adaptation à l'hôte dans les caraïbes chez le champignon Mycosphaerella fijiensis parasite du bananier. Carlier Jean, Zapater Marie-Françoise, Bieysse Daniel, Montero Yanetsy, Roussel Véronique, Habas Rémy, Ravel Sébastien, Rodriguez Rosalba, Martínez T., Perez-Vicente Luis, Abadie Catherine, Wright Stephen. 2018. . Aussois : INRA, Résumé, 1 p. Journées Jean Chevaugeon, Rencontres de Phytopathologie-Mycologie. 12, Aussois, France, 15 January 2018/19 January 2018.
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TOGGLe (Toolbox for Generic NGS Analyses) A framework to quickly build pipelines and to perform large-scale HTS analysis. Orjuela Castellanos Julie, Ravel Sébastien, Dereeper Alexis, Tando Ndomassi, Sabot François, Tranchant-Dubreuil Christine. 2018. In : JOBIM 2018 Abstracts. SFBI, GdR BiM, IFB, AMU, INSERM, CNRS. Marseille : SFBI, Résumé, pp. 330-331. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2018), Marseille, 3 July 2018/6 July 2018.
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The Coffee Genome Hub : [W185]. Dereeper Alexis, Droc Gaëtan, Bocs Stéphanie, Ravel Sébastien, Guignon Valentin, This Dominique, Cotta Michelle G., Lashermes Philippe. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 January 2014/15 January 2014.
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This list was generated on Sun Nov 22 11:03:15 2020 CET.