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Number of items: 55.

Journal article

Full moonlight-induced circadian clock entrainment in Coffea arabica. Breitler Jean-Christophe, Djerrab Doaa, Leran Sophie, Toniutti Lucile, Guittin Charlie, Severac Dany, Pratlong M., Dereeper Alexis, Etienne Hervé, Bertrand Benoît. 2020. BMC Plant Biology, 20:24, 11 p.
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Genotyping by sequencing can reveal the complex mosaic genomes in gene pools resulting from reticulate evolution: a case study in diploid and polyploid citrus. Ahmed Dalel, Comte Aurore, Curk Franck, Costantino Gilles, Luro François, Dereeper Alexis, Mournet Pierre, Froelicher Yann, Ollitrault Patrick. 2019. Annals of Botany, 123 (7) : pp. 1231-1251.
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Rice Galaxy: An open resource for plant science. Juanillas Venice, Dereeper Alexis, Beaume Nicolas, Droc Gaëtan, Dizon Joshua, Mendoza John Robert, Perdon Jon Peter, Mansueto Locedie, Triplett Lindsay, Lang Jillian M., Zhou Gabriel, Ratharanjan Kunalan, Plale Beth, Haga Jason, Leach Jan E., Ruiz Manuel, Thomson Michael J., Alexandrov Nickolai, Larmande Pierre, Kretzschmar Tobias, Mauleon Ramil P.. 2019. GigaScience, 8 (5) : pp. 1-14.
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Transcriptome data from three endemic Myrtaceae species from New Caledonia displaying contrasting responses to myrtle rust (Austropuccinia psidii). Soewarto Julia, Hamelin Chantal, Bocs Stéphanie, Mournet Pierre, Vignes Hélène, Berger Angélique, Armero Villanueva Alix Augusto, Martin Guillaume, Dereeper Alexis, Sarah Gautier, Carriconde Fabian, Maggia Laurent. 2019. Data in Brief, 22 : pp. 794-811.
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Identification of a hypervirulent pathotype of Rice yellow mottle virus: A Threat to genetic resistance deployment in West-Central Africa. Hébrard Eugénie, Pinel-Galzi Agnès, Oludare Aderonke, Poulicard Nils, Aribi Jamel, Fabre Sandrine, Issaka Souley, Mariac Cédric, Dereeper Alexis, Albar Laurence, Silué Drissa, Fargette Denis. 2018. Phytopathology, 108 (2) : pp. 299-307.
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Gigwa—Genotype investigator for genome-wide analyses. Sempere Guilhem, Philippe Florian, Dereeper Alexis, Ruiz Manuel, Sarah Gautier, Larmande Pierre. 2016. GigaScience, 5 (25), 9 p.
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The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Guignon Valentin, Hueber Yann, Rouard Mathieu, Bocs Stéphanie, Couvin David, De Lamotte Frédéric, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Gkanogiannis Anestis, Hamelin Chantal, Larivière Delphine, Martin Guillaume, Ortega Enrique, Pitollat Bertrand, Pointet Stéphanie, Ruiz Manuel, Gautier Sarah, Summo Marilyne, This Dominique, Ravel Sébastien, Larmande Pierre, Monat Cécile, Sabot François, Tando Ndomassi, Tranchant-Dubreuil Christine, Sempere Guilhem, Dereeper Alexis. 2016. Current Plant Biology, 7-8 : pp. 6-9.
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SNiPlay3: A web-based application for exploration and large scale analyses of genomic variations. Dereeper Alexis, Homa Félix, Andres Gwendoline, Sempere Guilhem, Sarah Gautier, Hueber Yann, Dufayard Jean François, Ruiz Manuel. 2015. Nucleic Acids Research, 43 (W1) : W295-W300.
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The coffee genome hub: a resource for coffee genomes. Dereeper Alexis, Bocs Stéphanie, Rouard Mathieu, Guignon Valentin, Ravel Sébastien, Tranchant-Dubreuil Christine, Poncet Valérie, Garsmeur Olivier, Lashermes Philippe, Droc Gaëtan. 2015. Nucleic Acids Research, 43 (D1), D1028-D1035
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The greater phenotypic homeostasis of the allopolyploid Coffea arabica improved the transcriptional homeostasis over that of both diploid parents. Bertrand Benoît, Bardil Amélie, Baraille Hélène, Dussert Stéphane, Doulbeau Sylvie, Dubois Emeric, Severac Dany, Dereeper Alexis, Etienne Hervé. 2015. Plant and Cell Physiology, 56 (10) : pp. 2035-2051.
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The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Denoeud France, Carretero-Paulet Lorenzo, Dereeper Alexis, Droc Gaëtan, Guyot Romain, Pietrella Marco, Chunfang Zheng, Alberti Adriana, Anthony François, Aprea Giuseppe, Aury Jean-Marc, Bento Pascal, Bernard Maria, Bocs Stéphanie, Campa Claudine, Cenci Alberto, Combes Marie-Christine, Crouzillat Dominique, Da Silva Corinne, Daddiego Loretta, De Bellis Fabien, Dussert Stéphane, Garsmeur Olivier, Gayraud Thomas, Guignon Valentin, Jahn Katharina, Jamilloux Véronique, Joët Thierry, Labadie Karine, Tianying Lan, Leclercq Julie, Lepelley Maud, Leroy Thierry, Lei-Ting Li, Librado Pablo, Lopez Loredana, Muñoz Adriana, Noël Benjamin, Pallavicini Alberto, Perrotta Gaetano, Poncet Valérie, Pot David, Priyono, Rigoreau Michel, Rouard Mathieu, Rozas Julio, Tranchant-Dubreuil Christine, VanBuren Robert, Qiong Zhang, Andrade Alan A., Argout Xavier, Bertrand Benoît, De Kochko Alexandre, Graziosi Giorgio, Henry Robert, Jayarama, Ming Ray, Nagai Chifumi, Rounsley Steve, Sankoff David, Giuliano Giovanni, Albert Victor A., Wincker Patrick, Lashermes Philippe. 2014. Science, 345 (6201) : pp. 1181-1184.
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BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution. Dereeper Alexis, Guyot Romain, Tranchant-Dubreuil Christine, Anthony François, Argout Xavier, De Bellis Fabien, Combes Marie-Christine, Gavory Fréderick, De Kochko Alexandre, Kudrna Dave, Leroy Thierry, Poulain Julie, Rondeau Myriam, Song Xiang, Wing Rod A., Lashermes Philippe. 2013. Plant Molecular Biology, 83 (3) : pp. 177-189.
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Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid Coffea arabica grown at contrasted temperatures. Combes Marie-Christine, Dereeper Alexis, Severac Dany, Bertrand Benoît, Lashermes Philippe. 2013. New Phytologist, 200 (1) : pp. 251-260.
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The banana genome hub. Droc Gaëtan, Larivière Delphine, Guignon Valentin, Yahiaoui Nabila, This Dominique, Garsmeur Olivier, Dereeper Alexis, Hamelin Chantal, Argout Xavier, Dufayard Jean-François, Lengellé Juliette, Baurens Franc-Christophe, Cenci Alberto, Pitollat Bertrand, D'Hont Angélique, Ruiz Manuel, Rouard Mathieu, Bocs Stéphanie. 2013. Database, 2013 (bat035), 14 p.
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Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton. Lacape Jean-Marc, Claverie Michel, Vidal Ramon Oliveira, Carazzolle Marcelo Falsarella, Guimarães Pereira Gonçalo Amarante, Ruiz Manuel, Pré Martial, Llewellyn Danny, Al-Ghazi Yves, Jacobs John, Dereeper Alexis, Huguet Stéphanie, Giband Marc, Lanaud Claire. 2012. PloS One, 7 (11):e48855, 16 p.
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SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects. Dereeper Alexis, Nicolas Stéphane, Le Cunff Loïc, Bacilieri Roberto, Doligez Agnès, Péros Jean-Pierre, Ruiz Manuel, This Patrice. 2011. BMC Bioinformatics, 12 (134), 14 p.
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The Generation Challenge Programme platform : Semantic standards and workbench for crop science. Bruskiewich Richard, Senger Martin, Davenport Guy, Ruiz Manuel, Rouard Mathieu, Hazekamp Tom, Takeya Masaru, Doi Koji, Satoh Kouji, Costa Marcos, Simon Reinhard, Balaji Jayashree, Akintunde Akinnola, Mauleon Ramil P., Wanchana Samart, Shah Trushar, Anacleto Mylah, Portugal Arllet, Jun Ulat Victor, Thongjuea Supat, Braak Kyle, Ritter Sebastian, Dereeper Alexis. 2008. International Journal of Plant Genomics, 2008, 6 p.
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SAT, a flexible and optimized Web application for SSR marker development. Dereeper Alexis, Argout Xavier, Billot Claire, Rami Jean-François, Ruiz Manuel. 2007. BMC Bioinformatics, 8 (465), 10 p.
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Guest paper

The South Green Bioinformatics platform, a comprehensive resource for crop genomics. Ruiz Manuel, Dereeper Alexis, Droc Gaëtan, Sarah Gautier, Tranchant-Dubreuil Christine, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, De Lamotte Frédéric, Larmande Pierre, Sabot François, Sempere Guilhem, Summo Marilyne, Pitollat Bertrand, This Dominique, Bocs Stéphanie, Hueber Yann, El Hassouni Nordine, Martin Guillaume, Gkanogiannis Anestis, Ravel Sébastien, Monat Cécile, Tando Ndomassi, Rouard Mathieu. 2017. In : Proceedings X-Meeting 2017. s.l. : s.n., 1 p. International Conference of the AB3. 13, São Pedro, Brésil, 4 October 2017/6 October 2017.
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Paper with proceedings

South Green, une plateforme de bioinformatique tournée vers l'agriculture dans les pays du sud. Ravel Sébastien, Bocs Stéphanie, Brousseau Louise, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, Larmande Pierre, Mahé Frédéric, Martin Guillaume, Orjuela-Bouniol Julie, Pitollat Bertrand, Rouard Mathieu, Ruiz Manuel, Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, Tando Ndomassi, Tranchant-Dubreuil Christine. 2018. In : JOBIM 2018 Abstracts. SFBI, GdR BiM, IFB, AMU, INSERM, CNRS. Marseille : SFBI, pp. 418-420. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2018), Marseille, 3 July 2018/6 July 2018.
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Gigwa - Genotype Investigator for Genome-Wide Analyses. [P0442]. Ruiz Manuel, Sempere Guilhem, Petel Adrien, Dereeper Alexis, Gautier Sarah, Larmande Pierre. 2017. In : Proceedings Plant and Animal Genome XXV Conference. San Diego : PAG, 1 p. Plant and Animal Genome Conference. 25, San Diego, États-Unis, 14 January 2017/18 January 2017.
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Molecular mechanisms in the first step of ABA-mediated response to drought in Coffea canephora clones. Cotta Michelle G., Marraccini Pierre, This Dominique, Leroy Thierry, Bocs Stéphanie, Droc Gaëtan, Dufayard Jean François, Dereeper Alexis, Lashermes Philippe, Andrade Alan Carvalho. 2015. In : Proceedings of the 25th International Conference on Coffee Science. ASIC. Paris : ASIC, pp. 42-50. ISBN 978-2-900212-24-0 International Conference on Coffee Science. 25, Armenia, Colombie, 8 September 2014/13 September 2014.
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South Green bioinformatics platform: Update 2015. Armero A., Baurens Franc-Christophe, Bocs Stéphanie, Breil A., De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Garsmeur Olivier, Guignon Valentin, Hamelin Chantal, Hueber Yann, Kougbeadjo Ayite, Larivière Delphine, Larmande Pierre, Lorenzo Jonathan, Martin Guillaume, Monat Cécile, Ndomassi T., Ortega Abboud Enrique, Pitollat Bertrand, Ravel Sébastien, Ranwez Vincent, Rouard Mathieu, Ruiz E., Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, This Dominique, Tranchant-Dubreuil Christine, Vallier Félix. 2015. In : Plant Genomics Congress. Global Engage. Londres : Global Engage, p. 51. Plant Genomics Congress. 3, Londres, Royaume-Uni, 11 May 2015/12 May 2015.
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Development of guava microsatellite (SSR) markers using the SAT software. Risterucci Ange-Marie, Nansot Grégoire, Grangeon Romain, Lepitre Vincent, Dereeper Alexis, Argout Xavier, Ruiz Manuel, Billotte Norbert. 2010. In : Proceedings of the Second International Symposium on guava and other Myrtaceae, Mérida, Mexico, November 10-13, 2008, Aguascalientes, Mexico, November 17-18, 2008. Rohde Wolfgang (ed.), Fermin Gustavo (ed.). ISHS. Louvain : ISHS [Belgique], pp. 113-119. (Acta Horticulturae, 849) ISBN 978-90-6605-018-1 International Symposium on Guava and other Myrtaceae. 2, Mérida, Mexique, 10 November 2008/18 November 2008.
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Poster

The South Green Genome Hubs. Droc Gaëtan, Argout Xavier, Bocs Stéphanie, Comte Aurore, Dereeper Alexis, Dufayard Jean François, Garsmeur Olivier, Gkanogiannis Anestis, Guignon Valentin, Hamelin Chantal, Lopez David, Oubda Nicolas, Martin Guillaume, Ravel Sébastien, Ruiz Manuel, Summo Marilyne, Thomas Coline, Tranchant-Dubreuil Christine, Rouard Mathieu. 2020. . SFBI, IFB, GDR-BIM. Montpellier : SFBI, 1 p. Journées ouvertes de biologie, informatique et mathématique (JOBIM 2020), Montpellier, France, 30 June 2020/3 July 2020.
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South Green bioinformatic resources for tropical and Mediterranean crops. Rouard Mathieu, Bocs Stéphanie, Breton Catherine, Comte Aurore, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, Larmande Pierre, Lopez David, Mahe Frédéric, Martin Guillaume, Orjuela-Bouniol Julie, Pitollat Bertrand, Ravel Sébastien, Ruiz Manuel, Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, Tando Ndomassi, Tranchant-Dubreuil Christine. 2020. . SFBI, IFB, GDR-BIM. Montpellier : SFBI, 1 p. Journées ouvertes de biologie, informatique et mathématique (JOBIM 2020). 20, Montpellier, France, 30 June 2020/3 July 2020.
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Resources to manage Rice Big Genomics Data. Agret Clément, Gottin Celine, Dereeper Alexis, Tranchant-Dubreuil Christine, Chateau Annie, Diévart Anne, Sarah Gautier, Mancheron Alban, Ruiz Manuel, Droc Gaëtan. 2019. . Taipei : ISFRG, 1 p. International Symposium of Rice Functional Genomics. 17, Taipei, Taïwan / (République de Chine (Taïwan)), 4 November 2019/6 November 2019.
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Exploring within-host diversity of plant viruses in rice agrosystems using two high-throughput sequencing strategies. Poulicard Nils, Dereeper Alexis, Pinel-Galzi Agnès, Fernandez Emmanuel, Julian Charlotte, Hubert Judith, Filloux Denis, Fargette Denis, Roumagnac Philippe, Hébrard Eugénie. 2018. In : Book of abstract of the International Phytobiomes Conference 2018. International Phytobiomes Alliance, INRA, IRD. Montpellier : International Phytobiomes Alliance-INRA, p. 68. International phytobiomes conference. 2, Montpellier, France, 4 December 2018/6 December 2018.
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South Green bioinformatics platform : Plateforme collaborative de bioinformatique verte héraultaise. Bocs Stéphanie, Couvin David, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Gkanogiannis Anestis, Guignon Valentin, Hamelin Chantal, Hueber Yann, Larivière Delphine, Larmande Pierre, Martin Guillaume, Monat Cécile, Ortega Abboud Enrique, Pitollat Bertrand, Pointet Stéphanie, Ravel Sébastien, Rouard Mathieu, This Patrice, Tranchant-Dubreuil Christine. 2017. . Montpellier : CIRAD, 1 poster Amphithéâtre "Patrimoine Numérique Scientifique", Montpellier, France, 20 February 2017/20 February 2017.
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Genotype investigator for Genome Wide Analysis (GIGwA) [P1111]. Larmande Pierre, Sempere Guilhem, Philippe Florian, Dereeper Alexis, Ruiz Manuel, Sarah Gautier. 2015. In : Plant and Animal Genomes Conference XXIII Conference, San diego, United States, San Diego, United States, January 10-14, 2015. s.l. : s.n., Résumé Plant and Animal Genome Conference. 23, San Diego, États-Unis, 10 January 2015/14 January 2015.
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Managing banana genetic resources and genomic information with the Triplet Drupal/Tripal/Chado [P0944]. Guignon Valentin, Ruas Max, Droc Gaëtan, Dereeper Alexis, Sardos Julie, Hueber Yann, Dufayard Jean-François, Roux Nicolas, Rouard Mathieu. 2015. In : Plant and Animal Genomes Conference XXIII Conference, San diego, United States, San Diego, United States, January 10-14, 2015. s.l. : s.n. Plant and Animal Genome Conference. 23, San Diego, États-Unis, 10 January 2015/14 January 2015.
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Banana genome hub. Droc Gaëtan, Larivière Delphine, Guignon Valentin, Yahiaoui Nabila, This Dominique, Garsmeur Olivier, Dereeper Alexis, Hamelin Chantal, Argout Xavier, Dufayard Jean-François, Lengellé Juliette, Baurens Franc-Christophe, Cenci Alberto, Pitollat Bertrand, D'Hont Angélique, Ruiz Manuel, Rouard Mathieu, Bocs Stéphanie. 2013. In : 6th International Biocuration Conference, Cambridge, Royaume-Uni, april 07-10 2013. s.l. : s.n., 1 p. International Biocuration Conference. 6, Cambridge, Royaume-Uni, 7 April 2013/10 April 2013.
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Identification and characterization of genes involved in ABA perception and signal transduction in Coffea spp : S02P13. Cotta Michelle G., Marraccini Pierre, This Dominique, Leroy Thierry, Bocs Stéphanie, Dereeper Alexis, Lashermes Philippe, Andrade Alan Carvalho. 2013. In : Biotic and Abiotic Stress Tolerance in Plants: the Challenge for the 21st Century : Book of abstracts of the CIBA 2013. Brasileiro Ana Christina Miranda (ed.), Fortes Ferreira Claudia (ed.), Fernandez Diana (ed.), Micheli Fabienne (ed.), Coelho Filho M.A. (ed.), Marraccini Pierre (ed.). EMBRAPA, UESC, CIRAD, IRD. Brasilia : EMBRAPA, Résumé, p. 50. Workshop on Biotic and Abiotic Stress Tolerance in Plants: the Challenge for the 21st Century, Ilhéus-Bahia, Brésil, 6 November 2013/8 November 2013.
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GenMapping web query, an integrated and genetic web application connected to multiple genetic and genomic mapping plant data sources. Poster 15. Dereeper Alexis, Argout Xavier, Ruiz Manuel. 2007. In : 4th International Workshop on Data Integration in the Life Sciences : poster abstracts. s.l. : s.n., Résumé, p. 18. International Workshop on Data Integration in the Life Science. 4, Philadelphia, États-Unis, 27 June 2007/29 June 2007.

Paper without proceedings

South Green resources to manage Rice Big Genomics Data [W682]. Agret Clément, Gottin Celine, Dereeper Alexis, Tranchant-Dubreuil Christine, Chateau Annie, Diévart Anne, Sarah Gautier, Mancheron Alban, Sempere Guilhem, Ruiz Manuel, Droc Gaëtan. 2020. In : Abstracts workshops of the PAG XXVIII. San Diego : PAG, Résumé, p. 302. Plant and Animal Genome. 28, San Diego, États-Unis, 11 January 2020/15 January 2020.
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Exploring within-host diversity of plant viruses in rice agrosystems using two high-throughput sequencing strategies. Poulicard Nils, Dereeper Alexis, Pinel-Galzi Agnès, Fernandez Emmanuel, Julian Charlotte, Hubert Judith, Filloux Denis, Fargette Denis, Roumagnac Philippe, Hébrard Eugénie. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, p. 34. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 January 2019/31 January 2019.
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The south green rice genome hub. Droc Gaëtan, Dereeper Alexis, Ruiz Manuel, Antoine Chloé, Barca Maïra, Tranchant-Dubreuil Christine. 2019. . San Diego : s.n., Résumé, 1 p. Plant and Animal Genome. 17, San Diego, États-Unis, 12 January 2019/16 January 2019.
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Gigwa - Genotype Investigator for Genome-Wide Analyses. Sempere Guilhem, Petel Adrien, Dereeper Alexis, Ruiz Manuel, Larmande Pierre. 2018. In : JOBIM 2018 Abstracts. SFBI, GdR BiM, IFB, AMU, INSERM, CNRS. Marseille : SFBI, Résumé, pp. 251-252. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2018), Marseille, 3 July 2018/6 July 2018.
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TOGGLe (Toolbox for Generic NGS Analyses) A framework to quickly build pipelines and to perform large-scale HTS analysis. Orjuela Castellanos Julie, Ravel Sébastien, Dereeper Alexis, Tando Ndomassi, Sabot François, Tranchant-Dubreuil Christine. 2018. In : JOBIM 2018 Abstracts. SFBI, GdR BiM, IFB, AMU, INSERM, CNRS. Marseille : SFBI, Résumé, pp. 330-331. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2018), Marseille, 3 July 2018/6 July 2018.
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The cassava genome hub. [C20]. Gkanogiannis Anestis, Dereeper Alexis, Szurek Boris, Zarate Carlos, López Camilo, Becerra López-Lavalle Luis Agusto, Ruiz Manuel. 2018. In : Proceedings Plant and Animal Genome XXVI Conference. PAG. San Diego : PAG, Résumé, 1 p. Plant and Animal Genomes Conference. 26, San Diego, États-Unis, 13 January 2018/17 January 2018.
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The international rice informatics consortium bioinformatics resources. Mauleon Ramil P., McNally Kenneth L., Mansueto Locedie, Chebotarov Dmytro, Hendrix Barboza Lord, Juanillas Venice, Larmande Pierre, Droc Gaëtan, Ruiz Manuel, Dereeper Alexis, Sackville Hamilton N. Ruaraidh, Alexandrov Nickolai, Leung Hei, Wing Rod A.. 2018. . ISFG, Tokyo University of Agriculture, JSB. Tokyo : ISRFG, Résumé, 1 p. International Symposium on Rice Functional Genomics (ISRFG 2018). 16, Tokyo, Japon, 5 September 2018/7 September 2018.
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The Banana Genome Hub : [W079]. Droc Gaëtan, Larivière Delphine, Guignon Valentin, Yahiaoui Nabila, This Dominique, Garsmeur Olivier, Dereeper Alexis, Hamelin Chantal, Argout Xavier, Dufayard Jean-François, Lengellé Juliette, Baurens Franc-Christophe, Cenci Alberto, Pitollat Bertrand, D'Hont Angélique, Ruiz Manuel, Rouard Mathieu, Bocs Stéphanie. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 January 2014/15 January 2014.
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The Coffee Genome Hub : [W185]. Dereeper Alexis, Droc Gaëtan, Bocs Stéphanie, Ravel Sébastien, Guignon Valentin, This Dominique, Cotta Michelle G., Lashermes Philippe. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 January 2014/15 January 2014.
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Transposable elements in the robusta coffee genome (Coffea canephora) : [W187]. Bocs Stéphanie, Dereeper Alexis, Gayraud Thomas, Jamilloux Véronique, Lashermes Philippe, Guyot Romain. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 January 2014/15 January 2014.
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The repetitive landscape of the Robusta coffee genome. Guyot Romain, Chaparro Christian, Bocs Stéphanie, Dereeper Alexis, Jamilloux Véronique, Domingues Douglas S., Lashermes Philippe. 2014. In : 11th Solanaceae Conference: book of abstracts, Porto Seguro, Brazil, November 2-6, 2014. Embrapa, UESC, UFLA, Ciba. s.l. : s.n., Résumé, p. 52. Solanaceae Conference. 11, Porto Seguro, Brésil, 2 November 2014/6 November 2014.
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The south green bioinformatics platform : [P988]. Rouard Mathieu, Dereeper Alexis, Droc Gaëtan, Sarah Gautier, Dufayard Jean-François, Guignon Valentin, Hamelin Chantal, Homa Félix, De Lamotte Frédéric, Larmande Pierre, Larivière Delphine, Sabot François, Sempere Guilhem, Summo Marilyne, Pitollat Bertrand, Pointet Stéphanie, This Dominique, Bocs Stéphanie, Ruiz Manuel. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 January 2014/15 January 2014.
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Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid Coffea arabica L. grown in contrasted temperatures : W190. Combes Marie-Christine, Dereeper Alexis, Bertrand Benoît, Lashermes Philippe. 2013. In : Plant and Animal Genome XXI conference, San Diego, USA, January 12-16 2013,. s.l. : s.n., Résumé, 1 p. Plant and Animal Genome conference. 21, San Diego, États-Unis, 12 January 2013/16 January 2013.
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Identificação de polimorfismos em genótipos de Coffea arabica de uma coleção da Etiópia : [n.142]. Yuyama Priscilla Mary, Pot David, Dereeper Alexis, Pointet Stéphanie, Gonçalves Dias da Silva João Batista, Hiroshi Sera Gustavo, Sera Tumoru, Charmetant Pierre, Silva Domingues Douglas, Leroy Thierry, Protasio Pereira Luiz Filipe. 2013. In : VIII Simpósio de Pesquisa dos Cafés do Brasil, 25 a 28 de novembro de 2013, Salvador, Brasil. s.l. : s.n., 5 p. Simpósio de Pesquisa dos Cafés do Brasil. 8, Salvador, Brésil, 25 November 2013/28 November 2013.
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Identificação e caracterização de genes associados à recepção e transdução do sinal de aba em Coffea sp : [n. 279]. Guitton Cotta Michelle, Marraccini Pierre, This Dominique, Leroy Thierry, Bocs Stéphanie, Dereeper Alexis, Lashermes Philippe, Carvalho Andrade Alan. 2013. In : VIII Simpósio de Pesquisa dos Cafés do Brasil, 25 a 28 de novembro de 2013, Salvador, Brasil. s.l. : s.n., 6 p. Simpósio de Pesquisa dos Cafés do Brasil. 8, Salvador, Brésil, 25 November 2013/28 November 2013.

Major cause of somatic polymorphism in clonal grape cultivars : W702. This Patrice, Carrier Gregory, Dereeper Alexis, Legrand Delphine, Sabot François, Maillol Vincent, Pajeile Maud, Ruiz Manuel, Romieu Charles, Bouchez Olivier, Audeguin Laurent, Boursiquot Jean-Michel, Le Cunff Loïc. 2013. In : Plant and Animal Genome XXI conference, San Diego, USA, January 12-16 2013,. s.l. : s.n., Résumé, 1 p. Plant and Animal Genome conference. 21, San Diego, États-Unis, 12 January 2013/16 January 2013.
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Role of Galaxy in a bioinformatic plant breeding platform. Maillol Vincent, Bacilieri Roberto, Bocs Stéphanie, Boursiquot Jean-Michel, Carrier Gregory, Dereeper Alexis, Droc Gaëtan, Fleury Cécile, Larmande Pierre, Le Cunff Loïc, Péros Jean-Pierre, Pitollat Bertrand, Ruiz Manuel, Sarah Gautier, Sempere Guilhem, Summo Marilyne, This Patrice, Dufayard Jean-François. 2012. In : Galaxy Community Conference GCC2012, Chicago, Etats-Unis, July 25-27 2012. s.l. : s.n., Résumé, 1 p. Galaxy Community Conference, Chicago, États-Unis, 25 July 2012/27 July 2012.
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SNiPlay: a web-based tool for detection, management and analysis of SNP (C900). Dereeper Alexis, Nicolas Stéphane, Carrier Gregory, Le Cunff Loïc, Bacilieri Roberto, Doligez Agnès, Péros Jean-Pierre, This Patrice, Ruiz Manuel. 2011. In : Abstracts of Plant and Animal Genomes XIXth Conference, San Diego, CA (USA), January 15-19, 2011. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 19, San Diego, États-Unis, 15 January 2011/19 January 2011.
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Generation challenge programme (GCP) domain modeling and crop information platform. Bruskiewich Richard, Braak Kyle, Davenport Guy, Dereeper Alexis, Farmer Andrew, Hazekamp Tom, McLaren Graham, Metz Thomas, Ritter Sebastian, Ruiz Manuel, Senger Martin, Simon Reinhard, Takeya Masaru, Van Hintum Theo. 2007. In : Abstracts of Plant and Animal Genomes XVth Conference, San Diego, CA (USA), January 13-17, 2007. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 15, San Diego, États-Unis, 13 January 2007/17 January 2007.

Crop information systems : the next generation. Bruskiewich Richard, Davenport Guy, Senger Martin, Metz Thomas, Ruiz Manuel, Dereeper Alexis, Takeya Masaru, Hazekamp Tom, Rouard Mathieu, Simon Reinhard, Rojas E., Balaji Jayashree, Akintunde Akinnola, Costa Marcos, Bink Marco, Wanchana Samart, Mauleon Ramil P., Morris Jane, Farmer Andrew, Chandra S., Kikuchi S., Gaiji Samy, McLaren Graham, Van Hintum Theo. 2006. In : Plant Genomics European Meetings, Venice, 2006. Bologne : Ed. Avenue media, Résumé, p. 77. Plant Genomics European Meetings. 5, Venise, Italie, 11 October 2006/14 October 2006.

SAT, a web-based pipeline for SSR markers development from enriched libraries. Dereeper Alexis, Argout Xavier, Billot Claire, Rami Jean-François, Ruiz Manuel. 2006. In : Abstracts of Plant and Animal Genomes XIVth Conference, San Diego, CA (USA), January 14-18, 2006. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 14, San Diego, États-Unis, 14 January 2006/18 January 2006.

This list was generated on Sun Sep 27 11:06:03 2020 CEST.