Parcourir par Auteur Cirad

Clustering with variable selection for longitudinal data: application to gene expression data. Denis Marie, Tadesse Mahlet. 2023. . ENAR. Nashville : ENAR, Résumé, 1 p. ENAR 2023 Spring Meeting, Nashville, États-Unis, 19 Mars 2023/22 Mars 2023.

A Bayesian two-step integrative procedure incorporating prior knowledge for the identification of miRNA-mRNAs involved in hepatocellular carcinoma. Denis Marie, Varghese Rency S., Barefoot Megan E., Tadesse Mahlet, Ressom Habtom W.. 2022. In : 2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC). IEEE. New-York : IEEE, 81-86. ISBN 9781728127835 Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). 44, Glasgow, Royaume-Uni, 11 Juillet 2022/15 Juillet 2022.

Bayesian varying coefficient model with selection: An application to functional mapping. Heuclin Benjamin (ed.), Mortier Frédéric (ed.), Trottier Catherine (ed.), Denis Marie (ed.). 2021. Journal of the Royal Statistical Society. Series C, Applied Statistics, 70 (1) : 24-50.

In silico QTL mapping in an oil palm breeding program reveals a quantitative and complex genetic resistance to Ganoderma boninense. Daval Aurélie, Pomiès Virginie, Le Squin Sandrine, Denis Marie, Riou Virginie, Breton Frédéric, Nopariansyah, Bink Marco, Cochard Benoît, Jacob Florence, Billotte Norbert, Tisne Sébastien. 2021. Molecular Breeding, 41 (9):53, 18 p.

Environmental and trophic determinism of fruit abscission and outlook with climate change in tropical regions. Tisne Sébastien, Denis Marie, Domonhedo Hubert, Pallas Benoît, Cazemajor Michel, Tranbarger Timothy John, Morcillo Fabienne. 2020. Plant-Environment Interactions, 1 (1) : 17-28.

Distinct leaf transcriptomic response of water deficient Eucalyptus grandis submitted to potassium and sodium fertilization. Favreau Bénédicte, Denis Marie, Ployet Raphael, Mounet Fabien, Peireira da Silva Hana, Franceschini Livia, Laclau Jean-Paul, Labate Carlos Alberto, Carrer Helaine. 2019. PloS One, 14 (6):e0218528, 30 p.

Metabolomics signatures associated with an oral glucose challenge in pregnant women. Gelaye Bizu, Clish C.B., Denis Marie, Larrabure G., Tadesse Mahlet, Deik A., Pierce K., Bullock K., Dennis C., Enquobahrie Daniel A., Williams Michelle A.. 2019. Diabetes and Metabolism, 45 (1) : 39-46.

A systems biology view of wood formation in Eucalyptus grandis trees submitted to different potassium and water regimes. Ployet Raphael, Veneziano Labate Monica, Regiani Thais, Christina Mathias, Morel Marie, San Clemente Hélène, Denis Marie, Favreau Bénédicte, Tomazello Filho Mario, Laclau Jean-Paul, Labate Carlos Alberto, Chaix Gilles, Grima Pettenati Jacqueline, Mounet Fabien. 2019. New Phytologist, 223 (2) : 766-782.

Evaluation of spatio-temporal Bayesian models for the spread of infectious diseases in oil palm. Denis Marie, Cochard Benoît, Syahputra Indra, De Franqueville Hubert, Tisne Sébastien. 2018. Spatial and Spatio-Temporal Epidemiology, 24 : 63-74.

Water deficiency and potassium supply trigger interconnected signals to modulate wood formation in Eucalyptus. Ployet Raphael, San Clemente Hélène, Morel Marie, Veneziano Labate Monica, Favreau Bénédicte, Denis Marie, Laclau Jean-Paul, Labate Carlos Alberto, Chaix Gilles, Grima Pettenati Jacqueline, Mounet Fabien. 2018. In : Eucalyptus 2018: Managing Eucalyptus plantation under global changes. Abstracts book. CIRAD, IUFRO, MUSE. Montpellier : CIRAD, Résumé, p. 106. ISBN 978-2-87614-743-0 Eucalyptus 2018, Montpellier, France, 17 Septembre 2018/21 Septembre 2018.

The Genomic Selection of Theobroma cacao: a new strategy of marker assisted selection to improve breeding efficiency and predict useful traits in new populations. [20]. Ribeyre Fabienne, Sounigo Olivier, Argout Xavier, Cilas Christian, Efombagn Mousseni Ives Bruno, Denis Marie, Bouvet Jean-Marc, Fouet Olivier, Lanaud Claire. 2017. In : Proceedings of the International Symposium on cocoa research. ICCO. Lima : ICCO, 7 p. International Symposium on Cocoa Research (ISCR 2017). 1, Lima, Pérou, 13 Novembre 2017/17 Novembre 2017.

Hierarchical Approaches for Integrating Various Types of Genomic Datasets. Denis Marie, Tadesse Mahlet G.. 2017. In : ENAR 2017 Spring Meeting abstracts. Eastern North American Region International Biometric Society. Washington : Eastern North American Region International Biometric Society, Résumé, 297. ENAR 2017 Spring Meeting, Washington, États-Unis, 12 Mars 2017/15 Mars 2017.

Identification of Ganoderma disease resistance loci using natural field infection of an oil palm multiparental population. Tisne Sébastien, Pomies Virginie, Riou Virginie, Syahputra Indra, Cochard Benoît, Denis Marie. 2017. G3 - Genes Genomes Genetics, 7 : 1683-1692.

Integrative genomic analyses. Tadesse Mahlet G., Denis Marie. 2017. In : ENAR 2017 Spring Meeting abstracts. Eastern North American Region International Biometric Society. Washington : Eastern North American Region International Biometric Society, Résumé, 189. ENAR 2017 Spring Meeting, Washington, États-Unis, 12 Mars 2017/15 Mars 2017.

Evaluation of hierarchical models for integrative genomic analyses. Denis Marie, Tadesse Mahlet. 2016. Bioinformatics, 32 (5) : 738-746.

Impact of potassium and sodium fertilization on secondary cell wall formation in Eucalyptus grandis. Ployet Raphael, Favreau Bénédicte, Denis Marie, San Clemente Hélène, Rodrigues José Carlos, Laclau Jean-Paul, Labate Monica, Tomazello Filho Mario, Labate Carlos Alberto, Grima Pettenati Jacqueline, Chaix Gilles, Mounet Fabien. 2016. . Arcachon : IUFRO, 1 poster IUFRO Genomics and Forest Tree Genetics, Arcachon, France, 30 Mai 2016/3 Juin 2016.

Les logiciels pour la sélection génomique. Denis Marie. 2016. In : Sélection génomique : théorie et mise en oeuvre en relation avec les programmes d'amélioration. Deretz Séverine (ed.). INRA, CIRAD. Paris : INRA, 145-154. (Ecoles-chercheurs INRA, 6) ISBN 2-7380-1387-2 Ecoles-chercheurs INRA sur la sélection géonomique 2013 - Théorie et mise en oeuvre en relation avec les programmes d'amélioration, Bruz, 23 Septembre 2013/27 Septembre 2013.

Placental genetic variations in circadian clock-related genes increase the risk of placental abruption. Qiu Chunfang, Gelaye Bizu, Denis Marie, Tadesse Mahlet G., Enquobahrie Daniel A., Ananth Cande V., Pacora Percy N., Salazar Manuel, Sanchez Sixto E., Williams Michelle A.. 2016. International Journal of Molecular Epidemiology and Genetics, 7 (1) : 32-40.

Précision de prédiction génomique chez une plante pérenne : cas du palmier à huile. Cros David, Denis Marie (collab.), Sanchez Leopoldo (collab.), Cochard Benoît (collab.), Flori Albert (collab.), Durand-Gasselin Tristan (collab.), Nouy Bruno (collab.), Omoré Alphonse (collab.), Pomiès Virginie (collab.), Riou Virginie (collab.), Suryana Edyana (collab.), Bouvet Jean-Marc (collab.). 2016. In : Sélection génomique : théorie et mise en oeuvre en relation avec les programmes d'amélioration. Deretz Séverine (ed.). INRA, CIRAD. Paris : INRA, 197-214. (Ecoles-chercheurs INRA, 6) ISBN 2-7380-1387-2 Ecoles-chercheurs INRA sur la sélection géonomique 2013 - Théorie et mise en oeuvre en relation avec les programmes d'amélioration, Bruz, 23 Septembre 2013/27 Septembre 2013.

Circadian clock-related genetic risk scores and risk of placental abruption. Qiu Chunfang, Gelaye Bizu, Denis Marie, Tadesse Mahlet G., Luque Fernandez Miguel Angel, Enquobahrie Daniel A., Ananth Cande V., Sanchez Sixto E., Williams Michelle A.. 2015. Placenta, 36 (12) : 1480-1486.

Experimental assessment of the accuracy of genomic selection in sugarcane. Gouy Matthieu, Rousselle Yves, Bastianelli Denis, Lecomte Philippe, Bonnal Laurent, Roques Danièle, Efile Jean-Claude, Rocher Solen, Daugrois Jean-Heinrich, Toubi Lyonel, Nabeneza Serge, Hervouet Catherine, Telismart Hugues, Denis Marie, Thong-Chane Audrey, Glaszmann Jean-Christophe, Hoarau Jean-Yves, Nibouche Samuel, Costet Laurent. 2015. In : Pushing the frontiers of sugarcane improvement, ISSCT Workshop abstracts. ERCANE, ARTAS, Tereos Océan Indien. Saint-Gilles : ISSCT, 56. Germplasm and Breeding ISSCT Workshop. 11, Saint-Gilles, Réunion, 1 Juin 2015/5 Juin 2015.

Genomic selection for heterosis without dominance in multiplicative traits: case study of bunch production in oil palm [W554]. Cros David, Denis Marie, Bouvet Jean-Marc, Sanchez Leopoldo. 2015. In : Plant and Animal Genomes Conference XXIII Conference, San diego, United States, San Diego, United States, January 10-14, 2015. s.l. : s.n. Plant and Animal Genome Conference. 23, San Diego, États-Unis, 10 Janvier 2015/14 Janvier 2015.

Genomic selection prediction accuracy in a perennial crop: case study of oil palm (Elaeis guineensis Jacq.). Cros David, Denis Marie, Sanchez Leopoldo, Cochard Benoît, Flori Albert, Durand-Gasselin Tristan, Nouy Bruno, Omoré Alphonse, Pomies Virginie, Riou Virginie, Suryana Edyana, Bouvet Jean-Marc. 2015. Theoretical and Applied Genetics, 128 (3) : 397-410.

Hierarchical approach for integrating various genomic data sets. Denis Marie, Tadesse Mahlet. 2015. . ASA. Seattle : ASA, Résumé, 1 p. JSM 2015 (Joint Statistical Meetings), Seattle, États-Unis, 8 Août 2015/13 Août 2015.

Impact of potassium and sodium fertilization on the leaf transcriptome of Eucalyptus grandis submitted to water deficiency. S3.P54. Favreau Bénédicte, da Silva Hana Pereira, Franceschini Livia Maria, Denis Marie, Ployet Raphael, Mounet Fabien, Carrer Helaine, Laclau Jean-Paul, Lab Carlos. 2015. In : Books of abstracts. IUFRO. Florence : IUFRO, 1. IUFRO Tree Biotechnology conference, Florence, Italie, 8 Juin 2015/12 Juin 2015.

Long-term genomic selection for heterosis without dominance in multiplicative traits: Case study of bunch production in oil palm. Cros David, Denis Marie, Bouvet Jean-Marc, Sanchez Leopoldo. 2015. BMC Genomics, 16 (651), 16 p.

Maternal early pregnancy serum metabolites and risk of gestational diabetes mellitus. Enquobahrie Daniel A., Denis Marie, Tadesse Mahlet, Gelaye Bizu, Ressom Habtom W., Williams Michelle A.. 2015. Journal of Clinical Endocrinology and Metabolism, 100 (11) : 4348-4356.

Mixed model approach for IBD-based QTL mapping in a complex oil palm pedigree. Tisne Sébastien, Denis Marie, Cros David, Pomies Virginie, Riou Virginie, Syahputra Indra, Omoré Alphonse, Durand-Gasselin Tristan, Bouvet Jean-Marc, Cochard Benoît. 2015. BMC Genomics, 16 (798), 12 p.

Near infrared spectroscopy as a discriminate approach to classify eucalyptus tissues according to their physiological status. Chaix Gilles, Favreau Bénédicte, Denis Marie, Regiani Thais, Carrer Helaine, Chambi Legoas Roger, Franzol Samara Dilio, Laclau Jean-Paul, Filho Mario Tomazello. 2015. In : NIR2015 Brazil Highlighting South America: Book of abstracts. ICNIRS. Foz do Iguassu : ICNIRS, Résumé, P197. International Conference on Near Infrared Spectroscopy. 17, Foz do Iguassu, Brésil, 18 Octobre 2015/23 Octobre 2015.

Assessing the additive and dominance genetic effects of vegetative propagation ability in Eucalyptus-influence of modeling on genetic gain. Makouanzi Garel, Bouvet Jean-Marc, Denis Marie, Saya Aubin Rachel, Mankessi François, Vigneron Philippe. 2014. Tree Genetics and Genomes, 10 (5) : 1243-1256.

Comparing strategies of genomic selection to increase oil palm fresh fruit bunch yield. Cros David, Denis Marie, Bouvet Jean-Marc, Sanchez Leopoldo. 2014. In : 4th International Oil Palm Conference, 17-19 June 2014, Bali, Indonesia. IOPRI. s.l. : s.n., 1 p. International Oil Palm Conference. 4, Bali, Indonésie, 17 Juin 2014/19 Juin 2014.

Estimation of genealogical coancestry in plant species using a pedigree reconstruction algorithm and application to an oil palm breeding population. Cros David, Sanchez Leopoldo, Cochard Benoît, Samper Patrick, Denis Marie, Bouvet Jean-Marc, Fernandez Jesus. 2014. Theoretical and Applied Genetics, 127 (4) : 981-994.

Genome-wide prediction methods in highly diverse and heterozygous species: proof-of-concept through simulation in grapevine. Fodor Agota, Segura Vincent, Denis Marie, Neuenschwander Samuel, Fournier-Level Alexandre, Chatelet Philippe, Aziz Homa Félix Abdel, Lacombe Thierry, This Patrice, Le Cunff Loïc. 2014. PloS One, 9 (11):e110436, 14 p.

Genomic selection in oil palm (Elaeis guineensis Jacq.). Cros David, Denis Marie, Sanchez Leopoldo, Cochard Benoît, Flori Albert, Durand-Gasselin Tristan, Nouy Bruno, Omoré Alphonse, Pomies Virginie, Riou Virginie, Suryana Edyana, Bouvet Jean-Marc. 2014. In : 4th International Oil Palm Conference, Bali, Indonesia, 17-19 June 2014. IOPRI. s.l. : s.n., 15 p. International Oil Palm Conference. 4, Bali, Indonésie, 17 Juin 2014/19 Juin 2014.

Nucleotide diversity in lignification genes and QTNs for lignin quality in a multi-parental population of Eucalyptus urophylla. Mandrou Eric, Denis Marie, Plomion Christophe, Salin Franck, Mortier Frédéric, Gion Jean-Marc. 2014. Tree Genetics and Genomes, 10 (5) : 1281-1290.

Placental genome and maternal-placental genetic interactions: A genome-wide and candidate gene association study of placental abruption. Denis Marie, Salazar M., Williams M.A., Enquobahrie Daniel A., Tadesse Mahlet G., Sanchez Sixto E., Ananth Cande V.. 2014. PloS One, 9 (12):e116346, 24 p.

Practival aspects of genomic selection in oil palm (Elaeis guineensis). Cros David, Denis Marie, Sanchez Leopoldo, Cochard Benoît, Flori Albert, Durand-Gasselin Tristan, Nouy Bruno, Omoré Alphonse, Pomies Virginie, Riou Virginie, Suryana Edyana, Bouvet Jean-Marc. 2014. In : International Colloquium on Harnessing the Oil Palm Genome for Breeding, Bali, Indonesia, 16 june 2014. ISOPB. s.l. : s.n., Résumé, 2 p. International Colloquium on Harnessing the Oil Palm Genome for Breeding, Bali, Indonésie, 16 Juin 2014.

Efficiency of genomic selection with models including dominance effect in the context of Eucalyptus breeding. Denis Marie, Bouvet Jean-Marc. 2013. Tree Genetics and Genomes, 9 (1) : 37-51.

Experimental assessment of the accuracy of genomic selection in sugarcane. Gouy Matthieu, Rousselle Yves, Bastianelli Denis, Lecomte Philippe, Bonnal Laurent, Roques Danièle, Efile Jean-Claude, Rocher Solen, Daugrois Jean-Heinrich, Toubi Lyonel, Nabeneza Serge, Hervouet Catherine, Telismart Hugues, Denis Marie, Thong-Chane Audrey, Glaszmann Jean-Christophe, Hoarau Jean-Yves, Nibouche Samuel, Costet Laurent. 2013. Theoretical and Applied Genetics, 126 (10) : 2575-2586.

Genetic variation of wood chemical traits and association with underlying genes in Eucalyptus urophylla. Denis Marie, Favreau Bénédicte, Ueno Saneyoshi, Camus-Kulandaivelu Létizia, Chaix Gilles, Gion Jean-Marc, Nourrisier-Mountou S., Polidori Joel, Bouvet Jean-Marc. 2013. Tree Genetics and Genomes, 9 (4) : 927-942.

Impact of Na and K fertilization on Eucalyptus response to drought - integrative approach : S02T08. Favreau Bénédicte, Denis Marie, Battie Laclau Patricia, Franzol Samara Dilio, Labate Carlos Alberto, Tomazello M., Chaix Gilles. 2013. In : Biotic and Abiotic Stress Tolerance in Plants: the Challenge for the 21st Century : Book of abstracts of the CIBA 2013. Brasileiro Ana Christina Miranda (ed.), Fortes Ferreira Claudia (ed.), Fernandez Diana (ed.), Micheli Fabienne (ed.), Coelho Filho M.A. (ed.), Marraccini Pierre (ed.). EMBRAPA, UESC, CIRAD, IRD. Brasilia : EMBRAPA, Résumé, 21-22. Workshop on Biotic and Abiotic Stress Tolerance in Plants: the Challenge for the 21st Century, Ilhéus-Bahia, Brésil, 6 Novembre 2013/8 Novembre 2013.

Leaf metabolomic fingerprinting of Eucalyptus grandis on field submitted to water constraint and K+ or Na+ fertilization. Favreau Bénédicte, Denis Marie, Regiani Thais, Moraes Fabricio E., Marques Felipe G, Budzinski I.G.F., Laclau Jean-Paul, Labate Carlos Alberto. 2013. In : 5th Brazilian Mass Spectrometry Conference (BrMASS 2013), Campinas, Brazil, 07-11 decembre 2013. Sociedade Brasileira de Espectrometria de Massas (BrMASS). s.l. : s.n., 1 p. Brazilian Mass Spectrometry Conference. 5, Campinas, Brésil, 7 Décembre 2013/11 Décembre 2013.

Efficiency of genomic selection with models including dominance effect in the context of perennial crop breeding. Denis Marie, Bouvet Jean-Marc. 2012. In : XVth Meeting of the EUCARPIA Biometrics in Plant Breeding Section. 15, September 2012, Stuttgart , Germany. s.l. : s.n., Résumé, 1 p. Meeting of the EUCARPIA Biometrics in Plant Breeding. 15, Stuttgart, Allemagne, 5 Septembre 2012/7 Septembre 2012.

Genomic selection in small populations with reduced effective size: example of oil palm. Cros David, Denis Marie, Sanchez Leopoldo, Cochard Benoît, Durand-Gasselin Tristan, Bouvet Jean-Marc. 2012. In : Tree Breeding, Genomics and Evolutionary Biology: New synergies to tackle the impact of climate change in the 21st century : Final Conference and Workshops of Noveltree Project, Helsinki and Vantaa, Finland, 6th-18th October 2012. s.l. : s.n., 1 p. Final Conference and Workshops of Noveltree Project, Helsinki, Finlande, 16 Octobre 2012/18 Octobre 2012.

Potential of genomic selection in perennial crops: preliminary results in the context of Eucalyptus and oil palm breeding : P-180. Denis Marie, Cros David, Cochard Benoît, Camus-Kulandaivelu Létizia, Durand-Gasselin Tristan, Bouvet Jean-Marc. 2012. In : Programme and book of abstracts of the 4th International Conference of Quantitative Genetics:Understanding Variation in Complex Traits, Edinburgh, UK, 17-22 june 2012. ICQG 4 Conference. s.l. : s.n., Résumé, 150. International Conference of Quantitative Genetics. 4, Edinburgh, Royaume-Uni, 17 Juin 2012/22 Juin 2012.

Functional variability of two lignification genes in Eucalyptus urophylla. Mandrou Eric, Mortier Frédéric, Denis Marie, Chaix Gilles, Villar Emilie, Plomion Christophe, Gion Jean-Marc. 2011. BMC Proceedings, 5 (7), suppl. : 012-012. Tree Biotechnology Conference from Genomes to Integration and Delivery, Bahia, Brésil, 26 Juin 2011/2 Juillet 2011.

Genomic selection in tree breeding : Testing accuracy of prediction models including dominance effect. Denis Marie, Bouvet Jean-Marc. 2011. BMC Proceedings, 5 (7), suppl. : 013-013. Tree Biotechnology Conference from Genomes to Integration and Delivery, Bahia, Brésil, 26 Juin 2011/2 Juillet 2011.

Genotype x environment interactions for growth and wood traits for eucalyptus hybrids. Chaix Gilles, Denis Marie, Polidori Joel, Vigneron Philippe, Makouanzi Garel, Diombokho Abdoulaye, Nourissier-Mountou Sophie, Bouvet Jean-Marc. 2011. In : Improvement and culture of eucalypts. Proceedings. De Moraes Gonçalves Jose Leonardo (ed.), Voigtlaender Maureen (ed.). USP-ESALQ, IUFRO, North Carolina State University, EMBRAPA, CIRAD, IPEF, CAPES. Piracicaba : ESALQ, 175-178. IUFRO Working group 2.08.03 Meeting on Improvement and culture of Eucalypts, Porto Seguro, Brésil, 14 Novembre 2011/18 Novembre 2011.

NIR spectral heritability: a promising tool for wood breeders. Hein Paulo Ricardo Gherardi, Denis Marie, Trugilho Paulo Fernando, Lima Jose Tarcisio, Rosado Antônio Marcos, Chaix Gilles. 2011. In : Improvement and culture of eucalypts. Proceedings. De Moraes Gonçalves Jose Leonardo (ed.), Voigtlaender Maureen (ed.). USP-ESALQ, IUFRO, North Carolina State University, EMBRAPA, CIRAD, IPEF, CAPES. Piracicaba : ESALQ, 251-254. IUFRO Working group 2.08.03 Meeting on Improvement and culture of Eucalypts, Porto Seguro, Brésil, 14 Novembre 2011/18 Novembre 2011.

Méthodes de modélisation bayésienne et applications en recherche clinique. Denis Marie. 2010. Montpellier : UM1, 154 p. Thèse de doctorat : Biostatistique. Information, structures, systèmes : Université Montpellier 1