Parcourir par Affiliation d'auteur

Exploring social indicators in smallholder food systems: modeling children's educational outcomes on crop-livestock family farms in Madagascar. Thom Amy E., Bélières Jean-François, Conradie Beatrice, Salgado Paulo, Vigne Mathieu, Fangueiro David. 2024. Frontiers in Sustainable Food Systems, 8:1356985, 17 p.

Metagenomics reveals the structure of Mastrevirus-host interaction network within an agro-ecosystem. Claverie Sohini, Hoareau Marie Murielle, Ben Chehida Sélim, Filloux Denis, Varsani Arvind, Roumagnac Philippe, Martin Darren Patrick, Lett Jean-Michel, Lefeuvre Pierre. 2023. Virus Evolution, 9 (2):vead043, 15 p.

The state of food systems worldwide in the countdown to 2030. Schneider Kate R., Fanzo Jessica, Haddad Lawrence, Herrero Mario, Moncayo Jose Rosero, Herforth Anna, Remans Roseline, Guarin Alejandro, Resnick Danielle, Covic Namukolo, Bene Christophe, Cattaneo Andrea, Aburto Nancy J., Ambikapathi Ramya, Aytekin Destan, Barquera Simon, Battersby Jane, Beal Ty, Molina Paulina Bizzoto, Cafiero Carlo, Campeau Christine, Caron Patrick, et al.. 2023. Nature Food, 4 (12) : 1090-1110.

Biogeographical survey of soil microbiomes across sub-Saharan Africa: structure, drivers, and predicted climate-driven changes. Cowan D.A., Lebre P.H., Amon C.E.R., Becker R.W., Boga H.I., Boulangé Alain, Chiyaka T.L., Coetzee T., De Jager P.C., Dikinya O., Eckardt F., Greve M., Harris M.A., Hopkins D.W., Houngnandan H.B., Houngnandan P., Jordaan K., Kaimoyo E., Kambura A.K., Kamgan-Nkuekam G., Makhalanyane T.P., Maggs-Kölling G., Marais E., Mondlane H., Nghalipo E., Olivier B.W., Ortiz M., Pertierra L.R., Ramond J.B., Seely M., Sithole-Niang I., Valverde A., Varliero G., Vikram S., Wall Diana H., Zeze A.. 2022. Microbiome, 10:131, 22 p.

Establishment of five new genera in the family Geminiviridae: Citlodavirus, Maldovirus, Mulcrilevirus, Opunvirus, and Topilevirus. Roumagnac Philippe, Lett Jean-Michel, Fiallo-Olivé Elvira, Navas-Castillo Jesús, Zerbini F. Murilo, Martin Darren Patrick, Varsani Arvind. 2022. Archives of Virology, 167 : 695-710.

Virion-associated nucleic acid-based metagenomics: A decade of advances in molecular characterization of plant viruses. Moubset Oumaima, François Sarah, Maclot François, Palanga Essowé, Julian Charlotte, Claude Lisa, Fernandez Emmanuel, Rott Philippe, Daugrois Jean-Heinrich, Antoine-Lorquin Aymeric, Bernardo Pauline, Blouin Arnaud G., Temple Coline, Kraberger Simona, Fontenele Rafaela S, Harkins Gordon William, Ma Yuxin, Marais Armelle, Candresse Thierry, Ben Chehida Sélim, Lefeuvre Pierre, Lett Jean-Michel, Varsani Arvind, Massart Sébastien, Ogliastro Mylène, Martin Darren Patrick, Filloux Denis, Roumagnac Philippe. 2022. Phytopathology, 112 (11) : 2253-2272.

Contribution of historical herbarium small RNAs to the reconstruction of a cassava mosaic geminivirus evolutionary history. Rieux Adrien, Campos Paola, Duvermy Arnaud, Scussel Sarah, Martin Darren Patrick, Gaudeul Myriam, Lefeuvre Pierre, Becker Nathalie, Lett Jean-Michel. 2021. Scientific Reports, 11 (1):21280, 12 p.

Fire and herbivory drive fungal and bacterial communities through distinct above- and belowground mechanisms. Vermeire Marie-Liesse, Thoresen J., Lennard K., Vikram S., Kirkman K., Swemmer Anthony, te Beest Mariska, Siebert F., Gordijn P., Venter Z., Brunel Caroline, Wolfaard G., Krumins J.A., Cramer M.D., Hawkins H.J.. 2021. Science of the Total Environment, 785:147189, 11 p.

Global COVID-19 lockdown highlights humans as both threats and custodians of the environment. Bates Amanda E., Primack Richard B., Biggar Brandy S., Bird Thomas J., Clinton Mary E., Command Rylan J., Richards Cerren, Shellard Marc, Geraldi Nathan R., Vergara Valeria, Acevedo-Charry Orlando, Colón-Piñeiro Zuania, Ocampo David, Ocampo-Peñuela Natalia, Sánchez-Clavijo Lina M., Adamescu Cristian M., Cheval Sorin, Racoviceanu Tudor, Adams Matthew D., Kalisa Egide, Kuuire Vincent Z., Aditya Vikram, Anderwald Pia, Wiesmann Samuel, Wipf Sonja, Badihi Gal, Henderson Matthew G., Loetscher Hanspeter, Baerenfaller Katja, Benedetti-Cecchi Lisandro, Bulleri Fabio, Bertocci Lacopo, Maggi Elena, Rindi Luca, Ravaglioli Chiara, Boerder Kristina, Bonnel Julien, Mathias Delphine, Archambault Philippe, Chauvaud Laurent, Braun Camrin D., Thorrold Simon R., Brownscombe Jacob W., Midwood Jonathan D., Boston Christine M., Brooks Jill L., Cooke Steven J., China Victor, Roll Uri, Belmaker Jonathan, Zvuloni Assaf, Coll Marta, Ortega Miquel, Connors Brendan, Lacko Lisa, Jayathilake Dinusha R.M., Costello Mark J., Crimmins Theresa M., Barnett LoriAnne, Denny Ellen G., Gerst Katharine L., Marsh R.L., Posthumus Erin E., Rodriguez Reilly, Rosemartin Alyssa, Schaffer Sara N., Switzer Jeff R., Wong Kevin, Cunningham Susan J., Sumasgutner Petra, Amar Arjun, Thomson Robert L., Stofberg Miqkayla, Hofmeyr Sally, Suri Jessleena, Stuart-Smith Rick D., Day Paul B., Edgar Graham J., Cooper Antonia T., Cabrera De Leo Fabio, Garner Grant, Des Brisay Paulson G., Schrimpf Michael B., Koper Nicola, Diamond Michael S., Dwyer Ross G., Baker Cameron J, Franklin Craig E., Efrat Ron, Berger-Tal Oded, Hatzofe Ohad, Eguíluz Víctor M., Rodríguez Jorge P., Fernández-Gracia Juan, Elustondo David, Calatayud Vicent, English Philina A., Archer Stephanie K., Dudas Sarah E., Haggarty Dana R., Gallagher Austin J., Shea Brandan D., Shipley Oliver N., Gilby Ben L., Ballantyne Jasmine, Olds Andrew D., Henderson Christopher J., Schlacher Thomas A., Halliday William D., Brown Nicholas A.W., Woods Mackenzie B., Balshine Sigal, Juanes Francis, Rider Mitchell J., Albano Patricia S., Hammerschlag Neil, Hays Graeme C., Esteban Nicole, Pan Yuhang, He Guojun, Tanaka Takanao, Hensel Marc J.S., Orth Robert J., Patrick Christopher J., Hentati-Sundberg Jonas, Olsson Olof, Hessing-Lewis Margot L., Higgs Nicholas D., McMahon Clive R., Harcourt Rob, Guinet Christophe, Hirsch Sarah E., Perrault Justin R., Hoover Shelby R., Reilly Jennifer D., Hobaiter Catherine, Gruber Thibaud, Huveneers Charlie, Udyawer Vinay, Clarke Thomas M., Kroesen Laura P., Hik David S., Cherry Seth G., Del Bel Belluz Justin A., Jackson Jennifer M., Lai Shengjie, Lamb Clayton T., LeClair Gregory D., Parmelee Jeffrey R., Chatfield Matthew W.H., Frederick Cheryl A., Lee Sangdon, Park Hyomin, Choi Jaein, LeTourneux Frédéric, Grandmont Thierry, Dulude de-Broin Frédéric, Bêty Joël, Gauthier Gilles, Legagneux Pierre, Lewis Jesse S., Haight Jeffrey, Liu Zhu, Lyon Jarod P., Hale Robin, D'Silva Dallas, MacGregor-Fors Ian, Arbelaez-Cortes Enrique, Estela Felipe A., Sánchez-Sarria Camilo E., García-Arroyo Michelle, Aguirre-Samboní Giann K., Franco Morales Juan C., Malamud Shahar, Gavriel Tal, Buba Yehezkel, Salingré Shira, Lazarus Mai, Yahel Ruthy, Ben Ari Yigael, Miller Eyal, Sade Rotem, Lavian Guy, Birman Ziv, Gury Manor, Baz Harel, Baskin Ilia, Penn Alon, Dolev Amit, Licht Ogen, Karkom Tabi, Davidzon Sharon, Berkovitch Avi, Yaakov Ofer, Manenti Raoul, Mori Emiliano, Ficetola Gentile Francesco, Lunghi Enrico, March David, Godley Brendan J., Martin Cecilia, Mihaly Steven F., Barclay David R., Thomson Dugald J.M., Dewey Richard, Bedard Jeannette, Miller Aroha, Dearden Amber, Chapman Jennifer, Dares Lauren, Borden Laura, Gibbs Donna, Schultz Jessica, Sergeenko Nikita, Francis Fiona, Weltman Amanda, Moity Nicolas, Ramírez-González Jorge, Mucientes Gonzalo, Alonso-Fernández Alexandre, Namir Itai, Bar-Massada Avi, Chen Ron, Yedvab Shmulik, Okey Thomas A., Oppel Steffen, Arkumarev Volen, Bakari Samuel, Dobrev Vladimir, Saravia-Mullin Victoria, Bounas Anastasios, Dobrev Vladimir, Kret Elzbieta, Mengistu Solomon, Pourchier Cloé, Ruffo Alazar, Tesfaye Million, Wondafrash Mengistu, Nikolov Stoyan C., Palmer Charles, Sileci Lorenzo, Rex Patrick T., Lowe Christopher G., Peters Francesc, Pine Matthew K., Radford Craig A, Radford Craig A, Wilson Louise, McWhinnie Lauren, Scuderi Alessia, Jeffs Andrew G., Prudic Kathleen L., Larrivée Maxim, McFarland Kent P., Solis Rodrigo, Hutchinson Rebecca A., Queiroz Nuno, Furtado Miguel A., Sims David W., Southall Emily, Quesada-Rodriguez Claudio A., Diaz-Orozco Jessica P., Rodgers Ku'ulei S., Severino Sarah J.L., Graham Andrew, Stefanak Matthew P., Madin Elizabeth M.P., Ryan Peter G., Maclean Kyle, Weideman Eleanor A., Sekercioğlu Cağan H., Kittelberger Kyle D., Kusak Josip, Seminoff Jeffrey A., Hanna Megan E., Shimada Takahiro, Meekan Mark G., Smith Martin, Mokhatla Mohlamatsane M., Soh Malcolm C.K., Pang Roanna Y.T., Ng Breyl X.K., Lee Benjamin P.Y.-H., Loo Adrian H.B., Er Kenneth B.H., Souza Gabriel B.G., Stallings Christopher D., Curtis Joseph S., Faletti Meaghan E., Peake Jonathan A., Schram Michael J., Wall Kara R., Terry Carina, Rothendler Matt, Zipf Lucy, Ulloa Juan Sebastián, Hernández-Palma Angélica, Gómez-Valencia Bibiana, Cruz-Rodríguez Cristian, Herrera-Varón Yenifer, Roa Margarita, Rodríguez-Buriticá Susana, Ochoa-Quintero Jose Manuel, Vardi Reut, Vázquez Víctor, Requena-Mesa Christian, Warrington Miyako H., Taylor Michelle E., Woodall Lucy C., Stefanoudis Paris V., Zhang Xiangliang, Yang Qiang, Zukerman Yuval, Sigal Zehava, Ayali Amir, Clua Eric, Carzon Pamela, Seguine Clementine, Corradini Andrea, Pedrotti Luca, Foley Catherine M., Gagnon Catherine Alexandra, Panipakoochoo Elijah, Milanes Celene B., Botero Camilo M., Velázquez Yunior R., Milchakova Nataliya A., Morley Simon A., Martin Stephanie M., Nanni Veronica, Otero Tania, Wakeling Julia, Abarro Sarah, Piou Cyril, et al.. 2021. Biological Conservation, 263:109175, 18 p.

How virulent are emerging maize-infecting mastreviruses? Oyeniran Kehinde A., Hartnady Penelope, Claverie Sohini, Lefeuvre Pierre, Monjane Adérito Luis, Donaldson Lara, Lett Jean-Michel, Varsani Arvind, Martin Darren Patrick. 2021. Archives of Virology, 166 (3) : 955-959.

ICTV Virus Taxonomy Profile: Geminiviridae 2021. Fiallo-Olivé Elvira, Lett Jean-Michel, Martin Darren Patrick, Roumagnac Philippe, Varsani Arvind, Zerbini F. Murilo, Navas-Castillo Jesús. 2021. Journal of General Virology, 102 (12), 2 p.

Identification of the begomoviruses squash leaf curl virus and watermelon chlorotic stunt virus in various plant samples in North America. Fontenele Rafaela S, Bhaskara Amulya, Cobb Ilaria N., Majure Lucas C., Salywon Andrew M., Avalos-Calleros Jesús, Argüello‐Astorga Gerardo R., Schmidlin Kara, Roumagnac Philippe, Ribeiro Simone G., Kraberger Simona, Martin Darren Patrick, Lefeuvre Pierre, Varsani Arvind. 2021. Viruses, 13 (5):810, 17 p.

New world cactaceae plants harbor diverse geminiviruses. Fontenele Rafaela S, Salywon Andrew M., Majure Lucas C., Cobb Ilaria N., Bhaskara Amulya, Avalos‐Callero Jesús A., Argüello‐Astorga Gerardo R., Schmidlin Kara, Khalifeh Anthony, Smith Kendal, Schreck Joshua, Lund Michael, Köhler Matias, Wojciechowski Martin, Hodgson Wendy C., Puente‐Martinez Raul, Van Doorslaer Koenraad, Kumari Safaa G., Oyeniran Kehinde A., Vernière Christian, Filloux Denis, Roumagnac Philippe, Lefeuvre Pierre, Ribeiro Simone G., Kraberger Simona, Martin Darren Patrick, Varsani Arvind. 2021. Viruses, 13 (4):694, 27 p.

Novel circular DNA virus identified in Opuntia discolor (Cactaceae) that codes for proteins with similarity to those of geminiviruses. Fontenele Rafaela S, Köhler Matias, Majure Lucas C., Avalos‐Callero Jesús A., Argüello‐Astorga Gerardo R., Font Fabián, Vidal Andreza H., Roumagnac Philippe, Kraberger Simona, Martin Darren Patrick, Lefeuvre Pierre, Varsani Arvind. 2021. Journal of General Virology, 102 (11), 7 p.

Viewpoint: Rigorous monitoring is necessary to guide food system transformation in the countdown to the 2030 global goals. Fanzo Jessica, Haddad Lawrence, Schneider Kate R., Bene Chris, Covic Namukolo, Guarin Alejandro, Herforth Anna, Herrero Acosta Mario, Sumaila Ussif Rashid, Aburto Nancy J., Amuyunzu-Nyamongo Mary, Barquera Simon, Battersby Jane, Beal Ty, Bizzotto Molina Paulina, Brusset Emery, Cafiero Carlo, Campeau Christine, Caron Patrick, et al.. 2021. Food Policy, 104:102163, 20 p.

Conserving Africa's wildlife and wildlands through the COVID-19 crisis and beyond. Lindsey Peter, Allan James, Brehony Peadar, Dickman Amy, Robson Ashley, Begg Colleen, Bhammar Hasita, Blanken Lisa, Breuer Thomas, Fitzgerald Kathleen, Flyman Michael, Gandiwa Patience, Giva Nicia, Kaelo Dickson, Nampindo Simon, Nyambe Nyambe, Steiner Kurt, Parker Andrew, Roe Dilys, Thomson Paul, Trimble Morgan, Caron Alexandre, Tyrrell Peter. 2020. Nature Ecology and Evolution, 4 : 1300-1310.

Diverse genomoviruses representing twenty-nine species identified associated with plants. Fontenele Rafaela S, Roumagnac Philippe, Richet Cécile, Kraberger Simona, Stainton Daisy, Aleamotu‘a Maketalena, Filloux Denis, Bernardo Pauline, Harkins Gordon William, McCarthy James, Charles Lachlan S., Lamas Natalia S., Abreu Emanuel F. M., Abreu Rayane A., Batista Graciete B., Lacerda Ana L. M., Salywon Andrew M., Wojciechowski Martin, Majure Lucas C., Martin Darren Patrick, Ribeiro Simone G., Lefeuvre Pierre, Varsani Arvind. 2020. Archives of Virology, 165 (12) : 2891-2901.

Diversity of pollen sources used by managed honey bees in variegated landscapes. Melin Annelie, Colville Jonathan F., Duckworth Gregory D., Altwegg Res, Slabbert Ruhan, Midgley Jeremy J., Rouget Mathieu, Donaldson John S.. 2020. Journal of Apicultural Research, 59 (5) : 988-999.

Heterogeneity of the rice microbial community of the Chinese centuries-old Honghe Hani rice terraces system. Alonso Pascal, Blondin Laurence, Gladieux Pierre, Mahé Frédéric, Sanguin Hervé, Ferdinand Romain, Filloux Denis, Desmarais Eric, Cerqueira Frédérique, Jin Baihui, Huang Huichuan, He Xiahong, Morel Jean-Benoit, Martin Darren Patrick, Roumagnac Philippe, Vernière Christian. 2020. Environmental Microbiology, 22 (8) : 3429-3445.

Large-scale survey reveals pervasiveness and potential function of endogenous geminiviral sequences in plants. Sharma Vikas, Lefeuvre Pierre, Roumagnac Philippe, Filloux Denis, Teycheney Pierre-Yves, Martin Darren Patrick, Maumus Florian. 2020. Virus Evolution, 6 (2):veaa071, 13 p.

RDP5: A computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets. Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe, Botha Gerrit, Maslamoney Suresh, Schwab Tiana, Kelz Zena, Kumar Venkatesh, Murrell Ben. 2020. Virus Evolution, 7 (1):veaa087, 3 p.

Relational hubs for collaborative landscape stewardship. Cockburn Jessica, Cundill Georgina, Shackleton Sheona, Cele Ayanda, Cornelius Susanna Francina (Ancia), Koopman Vaughan, Le Roux Jean-Pierre, McLeod Nicky, Rouget Mathieu, Schroder Samantha, Van den Broeck Dieter, Wright Dale R., Zwinkels Marijn. 2020. Society and Natural Resources, 33 (5) : 681-693.

Symptom evolution following the emergence of maize streak virus. Monjane Adérito Luis, Dellicour Simon, Hartnady Penelope, Oyeniran Kehinde A., Owor Betty E., Bezeidenhout Marion, Linderme Daphné, Syed Rizwan Ali, Donaldson Lara, Murray Shane, Rybicki Edward P., Kvarnheden Anders, Yazdkhasti Elhman, Lefeuvre Pierre, Froissart Rémy, Roumagnac Philippe, Shepherd Dionne Natalie, Harkins Gordon William, Suchard Marc, Lemey Philippe, Varsani Arvind, Martin Darren Patrick. 2020. eLife, 9:e51984, 19 p.

Emergence of southern rice black-streaked dwarf virus in the centuries-old Chinese Yuanyang agrosystem of rice landraces. Alonso Pascal, Gladieux Pierre, Moubset Oumaima, Shih Pei-Jung, Mournet Pierre, Frouin Julien, Blondin Laurence, Ferdinand Romain, Fernandez Emmanuel, Julian Charlotte, Filloux Denis, Adreit Henri, Fournier Elisabeth, Ducasse Aurélie, Grosbois Vladimir, Morel Jean-Benoit, Huang Huichuan, Jin Baihui, He Xiahong, Martin Darren Patrick, Vernière Christian, Roumagnac Philippe. 2019. Viruses, 11 (11):985, 13 p.

Evolution and ecology of plant viruses. Lefeuvre Pierre, Martin Darren Patrick, Elena Santiago F., Shepherd Dionne Natalie, Roumagnac Philippe, Varsani Arvind. 2019. Nature Reviews. Microbiology, 13 p.

Exploring the diversity of Poaceae infecting mastreviruses on Reunion Island using a viral metagenomicsbased approach. Claverie Sohini, Ouattara Alassane, Hoareau Murielle, Filloux Denis, Varsani Arvind, Roumagnac Philippe, Martin Darren Patrick, Lett Jean-Michel, Lefeuvre Pierre. 2019. Scientific Reports, 9:12716, 11 p.

Novel circular DNA viruses associated with Apiaceae and Poaceae from South Africa and New Zealand. Richet Cécile, Kraberger Simona, Filloux Denis, Bernardo Pauline, Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe, Varsani Arvind. 2019. Archives of Virology, 164 (1) : 237-242.

Using a multi-isotope approach to understand waterfowl movement in southern Africa. Mutumi Gregory L., Cumming Graeme S., Sullivan Mazeika P., Caron Alexandre, Cáceres Carlos. 2019. Condor, 121:duz049 : 1-10.

Assessing the role of dispersed floralresources for managed bees in providingsupporting ecosystem services for croppollination. Melin Annelie, Rouget Mathieu, Colville Jonathan F., Midgley Jeremy J., Donaldson John S.. 2018. PeerJ, 6:e5654, 23 p.

Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale. Bernardo Pauline, Charles-Dominique Tristan, Barakat Mohamed, Ortet Philippe, Fernandez Emmanuel, Filloux Denis, Hartnady Penelope, Rebelo Tony A., Cousins Stephen, Mesleard François, Cohez Damien, Yaverkovski Nicole, Varsani Arvind, Harkins Gordon William, Peterschmitt Michel, Malmstrom Carolyn, Martin Darren Patrick, Roumagnac Philippe. 2018. ISME Journal, 12 : 174-184.

Increase in taxonomic assignment efficiency of viral reads in metagenomic studies. François Sarah, Filloux Denis, Frayssinet Marie, Roumagnac Philippe, Martin Darren Patrick, Ogliastro Mylène, Froissart Rémy. 2018. Virus Research, 244 : 230-234.

Nanovirus‐alphasatellite complex identi ed in Vicia cracca in the Rhône delta region of France. Gallet Romain, Kraberger Simona, Filloux Denis, Galzi Serge, Fontes Hugo, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2018. Archives of Virology, 163 (3) : 695-700.

Notes on recombination and reassortment in multipartite/segmented viruses. Varsani Arvind, Lefeuvre Pierre, Roumagnac Philippe, Martin Darren Patrick. 2018. Current Opinion in Virology, 33 : 156-166.

World management of Geminiviruses. Rojas Maria R., Macedo Monica A., Maliano Minor R., Soto-Aguilar Maria, Souza Juliana O., Briddon Rob W., Kenyon Lawrence, Rivera-Bustamante Rafael, Zerbini F. Murilo, Adkins Scott, Legg James, Kvarnheden Anders, Wintermantel William M., Sudarshana Mysore R., Peterschmitt Michel, Lapidot Moshe, Martin Darren Patrick, Moriones Enrique, Inoue-Nagata Alice K., Gilbertson Robert L.. 2018. Annual Review of Phytopathology, 56 : 637-677.

A framework for engaging stakeholders on the management of alien species. Novoa Ana, Shackleton Ross, Canavan Susan, Cybele Cathleen, Davies Sarah J., Dehnen-Schmutz Katharina, Fried Jana, Gaertner Mirijam, Geerts Sjirk, Griffiths Charles L., Kaplan Haylee, Kumschick Sabrina, Le Maitre David C., Measey G. John, Nunes Ana L., Richardson David M., Robinson Tamara B., Touza Julia, Wilson John R. U.. 2018. Journal of Environmental Management, 205 : 286-297.

The westward journey of alfalfa leaf curl virus. Davoodi Zohreh, Bejerman Nicolás, Richet Cécile, Filloux Denis, Kumari Safaa G., Chatzivassiliou Elisavet K., Galzi Serge, Julian Charlotte, Samarfard Samira, Trucco Verónica, Giolitti Fabián, Fiallo-Olivé Elvira, Navas-Castillo Jesús, Asaad Nader, Rahman Moukahel Abdul, Hijazi Jomana, Mghandef Samia, Heydarnejad Jahangir, Massumi Hossein, Varsani Arvind, Dietzgen Ralf G., Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe. 2018. Viruses, 10 (10):542, 16 p.

Capulavirus and Grablovirus: Two new genera in the family Geminiviridae. Varsani Arvind, Roumagnac Philippe, Fuchs Marc, Navas-Castillo Jesús, Moriones Enrique, Idris Ali, Briddon Rob W., Rivera-Bustamante Rafael, Zerbini F. Murilo, Martin Darren Patrick. 2017. Archives of Virology, 162 (6) : 1819-1831.

Comment on “Marine plastic debris emits a keystone infochemical for olfactory foraging seabirds” by Savoca et al.. Dell'Ariccia Gaia, Phillips Richard A., Van Franeker Jan A., Gaidet Nicolas, Catry Paulo, Granadeiro José P., Ryan Peter G., Bonadonna Francesco. 2017. Science Advances, 3 (6):e1700526, 3 p.

ICTV virus taxonomy profile: Geminiviridae. Zerbini F. Murilo, Briddon Rob W., Idris Ali, Martin Darren Patrick, Moriones Enrique, Navas-Castillo Jesús, Rivera-Bustamante Rafael, Roumagnac Philippe, Varsani Arvind. 2017. Journal of General Virology, 98 : 131-133.

Molecular diversity, geographic distribution and host range of monocot-infecting mastreviruses in Africa and surrounding islands. Kraberger Simona, Saumtally A. Salem, Pande Daniel, Khoodoo Michel H.R., Dhayan Sonadall, Dookun-Saumtally Asha, Shepherd Dionne Natalie, Hartnady Penelope, Atkinson Richard, Lakay Francisco, Hanson Britt, Redhi Devasha, Monjane Adérito Luis, Windram Oliver P., Walters Matthew, Oluwafemi Sunday, Lett Jean-Michel, Lefeuvre Pierre, Martin Darren Patrick, Varsani Arvind. 2017. Virus Research, 238 : 171-178.

Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and Réunion. Boukari Wardatou, Alcala-Briseño Ricardo I., Kraberger Simona, Fernandez Emmanuel, Filloux Denis, Daugrois Jean-Heinrich, Comstock Jack C., Lett Jean-Michel, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe, Polston Jane E., Rott Philippe. 2017. Virology Journal, 14:146, 8 p.

Rapid prioritization of alien plants for eradication based on climatic suitability and eradication feasibility. Rentería Jorge L., Rouget Mathieu, Visser Vernon. 2017. Austral Ecology, 42 (8) : 995-1005.

Divergent evolutionary and epidemiological dynamics of cassava mosaic geminiviruses in Madagascar. De Bruyn Alexandre, Harimalala Mireille Aurélie, Zinga Innocent, Mabvakure Batsirai, Hoareau Murielle, Ravigné Virginie, Walters Matthew, Reynaud Bernard, Varsani Arvind, Harkins Gordon William, Martin Darren Patrick, Lett Jean-Michel, Lefeuvre Pierre. 2016. BMC Evolutionary Biology, 16 (182), 21 p.

Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa. Bernardo Pauline, Muhire Brejnev, François Sarah, Deshoux Maëlle, Hartnady Penelope, Farkas Kata, Kraberger Simona, Filloux Denis, Fernandez Emmanuel, Galzi Serge, Ferdinand Romain, Granier Martine, Marais Armelle, Monge Blasco Pablo, Candresse Thierry, Escriu Fernando, Varsani Arvind, Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe. 2016. Virology, 493 : 142-153.

Ongoing geographical spread of Tomato yellow leaf curl virus. Mabvakure Batsirai, Martin Darren Patrick, Kraberger Simona, Cloete Leendert, van Brunschot Sharon, Geering Andrew D., Thomas John, Bananej Kaveh, Lett Jean-Michel, Lefeuvre Pierre, Varsani Arvind, Harkins Gordon William. 2016. Virology, 498 : 257-264.

Testing epidemiological functional groups as predictors of avian haemosporidia patterns in southern Africa. Hellard Eléonore, Cumming Graeme S., Caron Alexandre, Coe Elizabeth, Peters Jeffrey L.. 2016. Ecosphere, 7 (4), 17 p.

Alfalfa leaf curl virus: an aphid-transmitted geminivirus. Roumagnac Philippe, Granier Martine, Bernardo Pauline, Deshoux Maëlle, Ferdinand Romain, Galzi Serge, Fernandez Emmanuel, Julian Charlotte, Abt Isabelle, Filloux Denis, Mesleard François, Varsani Arvind, Blanc Stéphane, Martin Darren Patrick, Peterschmitt Michel. 2015. Journal of Virology, 89 (18) : 9683-9688.

Bridge hosts, a missing link for disease ecology in multi-host systems. Caron Alexandre, Cappelle Julien, Cumming Graeme S., De Garine-Wichatitsky Michel, Gaidet Nicolas. 2015. Veterinary Research, 46 (83), 11 p.

Empirical analysis suggests continuous and homogeneous circulation of Newcastle disease virus in a wide range of wild bird species in Africa. Cappelle Julien, Caron Alexandre, Servan de Almeida Renata, Gil Patricia, Pedrono Miguel, Mundava Josephine, Fofana Bouba, Balança Gilles, Dakouo Martin, Ould El Mamy Ahmed Bezeid, Abolnik Célia, Maminiaina Olivier Fridolin, Cumming Graeme S., De Visscher Marie-Noël, Albina Emmanuel, Chevalier Véronique, Gaidet Nicolas. 2015. Epidemiology and Infection, 143 (6) : 1292-1303.

Identification of novel Bromus- and Trifolium-associated circular DNA viruses. Kraberger Simona, Farkas Kata, Bernardo Pauline, Booker Cameron, Argüello-Astorga Gerardo, Mesleard François, Martin Darren Patrick, Roumagnac Philippe, Varsani Arvind. 2015. Archives of Virology, 160 (5) : 1303-1311.

Implications of water policy reforms for agricultural productivity in South Africa: Scenario analysis based on the Olifants river basin. Racine Thiam Djiby, Muchapondwa Edwin, Kirsten Johann F., Bourblanc Magalie. 2015. Water Resources and Economics, 9 : 60-79.

The genomes of many yam species contain transcriptionally active endogenous geminiviral sequences that may be functionally expressed. Filloux Denis, Murrell Sasha, Koohapitagtam M., Golden Michael, Julian Charlotte, Galzi Serge, Uzest Marilyne, Rodier-Goud Marguerite, D'Hont Angélique, Vernerey Marie-Stéphanie, Wilkin P., Peterschmitt Michel, Winter Stephan, Murrell Ben, Martin Darren Patrick, Roumagnac Philippe. 2015. Virus Evolution, 1 (1), 17 p.

A social-ecological approach to landscape epidemiology: geographic variation and avian influenza. Cumming Graeme S., Abolnik Célia, Caron Alexandre, Gaidet Nicolas, Grewar John, Hellard Eléonore, Henry Dominic A.W., Reynolds Chevonne. 2015. Landscape Ecology, 30 (6) : 963-985.

Appearances can be deceptive: Revealing a hidden viral infection with deep sequencing in a plant quarantine Context. Candresse Thierry, Filloux Denis, Muhire Brejnev, Julian Charlotte, Galzi Serge, Fort Guillaume, Bernardo Pauline, Daugrois Jean-Heinrich, Fernandez Emmanuel, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2014. PloS One, 9 (7):e102945, 13 p.

Evidence of pervasive biologically functional secondary structures within the genomes of eukaryotic single-stranded DNA viruses. Muhizi Muhire Brejnev, Golden Michael, Murrell Ben, Lefeuvre Pierre, Lett Jean-Michel, Gray Alistair J.A., Poon Art Y.F., Kwanele Ngandu Nobubelo, Semegni Jean-Yves, Tanov Emil Pavlov, Monjane Adérito Luis, Harkins Gordon William, Varsani Arvind, Shepherd Dionne Natalie, Martin Darren Patrick. 2014. Journal of Virology, 88 (4) : 1972-1989.

Timing and patterns of the ENSO signal in Africa over the last 30 years: Insights from normalized difference vegetation index data. Philippon Nathalie, Martiny Nadège, Camberlin Pierre, Hoffman M.T., Gond Valéry. 2014. Journal of Climate, 27 (7) : 2509-2532.

Host associations, biogeography, and phylogenetics of avian malaria in southern African waterfowl. Cumming Graeme S., Shepard Eric, Okanga Sharon, Caron Alexandre, Ndlovu Mduduzi, Peters Jeffrey L.. 2013. Parasitology, 140 : 193-201.

Adaptive evolution by recombination is not associated with increased mutation rates in Maize streak virus. Monjane Adérito Luis, Pande Daniel, Lakay Francisco, Shepherd Dionne Natalie, Van der Walt Eric, Lefeuvre Pierre, Lett Jean-Michel, Varsani Arvind, Rybicki Edward P., Martin Darren Patrick. 2012. BMC Evolutionary Biology, 12 (252), 13 p.

Investigating avian influenza infection hotspots in old-world shorebirds. Gaidet Nicolas, Ould El Mamy Ahmed Bezeid, Cappelle Julien, Caron Alexandre, Cumming Graeme S., Grosbois Vladimir, Gil Patricia, Hammoumi Saliha, Servan de Almeida Renata, Fereidouni Sasan R., Cattoli Giovanni, Abolnik Célia, Mundava Josephine, Fofana Bouba, Ndlovu Mduduzi, Diawara Yelli, Hurtado Renata, Dodman Tim, Balança Gilles. 2012. PloS One, 7 (9):e46049, 12 p.

Linking avian communities and avian influenza ecology in southern Africa using epidemiological functional groups. Caron Alexandre, De Garine-Wichatitsky Michel, Ndlovu Mduduzi, Cumming Graeme S.. 2012. Veterinary Research, 43 (73), 11 p.

Occurrence of the Israel strain of Tomato yellow leaf curl virus in New Caledonia and Loyalty Islands. Péréfarres Frédéric, De Bruyn Alexandre, Kraberger Simona, Hoareau Murielle, Barjon F., Lefeuvre Pierre, Pellegrin Frédéric, Caplong Philippe, Varsani Arvind, Lett Jean-Michel. 2012. New Disease Reports, 25 (6) : 6.

Quantitative comparison and selection of home range metrics for telemetry data. Cumming Graeme S., Cornélis Daniel. 2012. Diversity and Distributions, 18 (11) : 1057-1065.

Report on a five-year avian influenza survey in the manyame catchment. Caron Alexandre, Cumming Graeme S., Mundava Josephine, Chiweshe Ngoni, Mundy Peter J., De Garine-Wichatitsky Michel. 2012. Honeyguide, 58 (2) : 113-120.

Towards a unification of movement ecology and biogeography: conceptual framework and a case study on Afrotropical ducks. Cumming Graeme S., Gaidet Nicolas, Ndlovu Mduduzi. 2012. Journal of Biogeography, 39 (8) : 1401-1411.

Understanding the ecological drivers of avian influenza virus infection in wildfowl : A continental-scale study across Africa. Gaidet Nicolas, Caron Alexandre, Cappelle Julien, Cumming Graeme S., Balança Gilles, Hammoumi Saliha, Cattoli Giovanni, Abolnik Célia, Servan de Almeida Renata, Gil Patricia, Fereidouni Sasan R., Grosbois Vladimir, Tran Annelise, Mundava Josephine, Fofana Bouba, Ould El Mamy Ahmed Bezeid, Ndlovu Mduduzi, Mondain-Monval J.Y., Triplet Patrick, Hagemeijer Ward, Karesh William B., Newman Scott, Dodman Tim. 2012. Proceedings - Royal Society. Biological Sciences, 279 (1731) : 1131-1141.

A novel maize-infecting mastrevirus from La Réunion Island. Pande Daniel, Kraberger Simona, Lefeuvre Pierre, Lett Jean-Michel, Shepherd Dionne Natalie, Varsani Arvind, Martin Darren Patrick. 2012. Archives of Virology, 157 (8) : 1617-1621.

Complete genome sequence of a dahlia common mosaic virus isolate from New Zealand. Hadfield James, Linderme Daphné, Shepherd Dionne Natalie, Bezuidenhout Marion, Lefeuvre Pierre, Martin Darren Patrick, Varsani Arvind. 2011. Archives of Virology, 156 (12) : 2297-2301.

Ecotypes of wild rooibos (Aspalathus linearis (Burm. F) Dahlg., Fabaceae) are ecologically distinct. Hawkins A.B., Malgas R., Biénabe Estelle. 2011. South African Journal of Botany, 77 (2) : 360-370.

Eragrostis minor streak virus: an Asian streak virus in Africa. Martin Darren Patrick, Linderme Daphné, Lefeuvre Pierre, Shepherd Dionne Natalie, Varsani Arvind. 2011. Archives of Virology, 156 (7) : 1299-1303.

Estimating and validating a dynamic risk factor model for pathogen transmission using community-level bird census data : avian influenza at the waterfowl/domestic bird interface in Zimbabwe. Caron Alexandre, De Garine-Wichatitsky Michel, Gaidet Nicolas, Abolnik Célia, Cumming Graeme S.. 2011. Ecohealth, 7, suppl., Résumé, S121 International One Health Congress. 1, Victoria, Australie, 14 Février 2011/16 Février 2011.

Persistence of low pathogenic avian influenza virus in waterfowl in a Southern African ecosystem. Caron Alexandre, Abolnik Célia, Mundava Josephine, Gaidet Nicolas, Burger Christina E., Mochotlhoane Bontsi, Bruinzeel Leo W., Chiweshe Ngoni, De Garine-Wichatitsky Michel, Cumming Graeme S.. 2011. Ecohealth, 8 (1) : 109-115. International One Health Congress. 1, Victoria, Australie, 14 Février 2011/16 Février 2011.

Reconstructing the history of maize streak virus strain a dispersal to reveal diversification hot spots and its origin in Southern Africa. Monjane Adérito Luis, Harkins Gordon William, Martin Darren Patrick, Lemey Philippe, Lefeuvre Pierre, Shepherd Dionne Natalie, Oluwafemi Sunday, Simuyandi Michelo, Zinga Innocent, Komba Ephrem Kosh, Lakoutene Didier P., Mandakombo Noella, Mboukoulida Joseph, Semballa Silla, Tagne Appolinaire, Tiendrebeogo Fidèle, Erdmann Julia B., Van Antwerpen Tania, Owor Betty E., Flett Bradley, Ramusi Moses, Windram Oliver P., Lett Jean-Michel, Briddon Rob W., Markham Peter G., Rybicki Edward P., Varsani Arvind. 2011. Journal of Virology, 85 (18) : 9623-9636.

Risk assessment, eradication, and biological control: global efforts to limit Australian acacia invasions. Wilson John R. U., Gairifo Claire, Gibson Michelle R., Arianoutsou Margarita, Bakar Baki B., Baret Stéphane, Celesti-Grapow Laura, DiTomaso Joseph M., Dufour-Dror Jean-Marc, Kueffer Christophe, Kull Christian A., Hoffmann John H., Impson Fiona A. C., Loope Lloyd L., Marchante Elizabete, Marchante Hélia, Moore Joslin L., Murphy Daniel J., Tassin Jacques, Witt Arne, Zenni Raphael D., Richardson David M.. 2011. Diversity and Distributions, 17 (5) : 1030-1046.

The ecology of influenza a viruses in wild birds in Southern Africa. Cumming Graeme S., Caron Alexandre, Abolnik Célia, Cattoli Giovanni, Bruinzeel Leo W., Burger Christina E., Cecchetin Krizia, Chiweshe Ngoni, Mochotlhoane Bontsi, Mutumi Gregory L., Ndlovu Mduduzi. 2011. Ecohealth, 8 (1) : 4-13. International One Health Congress. 1, Victoria, Australie, 14 Février 2011/16 Février 2011.

Estimating dynamic risk factors for pathogen transmission using community-level bird census data at the wildlife/domestic interface. Caron Alexandre, De Garine-Wichatitsky Michel, Gaidet Nicolas, Chiweshe Ngoni, Cumming Graeme S.. 2010. Ecology and Society, 15 (3):25, 25 p.

The spread of Tomato Yellow leaf Curl Virus from the Middle East to the world. Lefeuvre Pierre, Martin Darren Patrick, Harkins Gordon William, Lemey Philippe, Gray Alistair J.A., Meredith Sandra, Lakay Francisco, Monjane Adérito Luis, Lett Jean-Michel, Varsani Arvind. 2010. PLoS Pathogens, 6 (10):e1001164, 12 p.

Comparative analysis of Panicum streak virus and Maize streak virus diversity, recombination patterns and phylogeography. Varsani Arvind, Monjane Adérito Luis, Donaldson Lara, Oluwafemi Sunday, Zinga Innocent, Komba Ephrem Kosh, Plakoutene Didier, Mandakombo Noella, Mboukoulida Joseph, Semballa Silla, Briddon Rob W., Markham Peter G., Lett Jean-Michel, Lefeuvre Pierre, Rybicki Edward P., Martin Darren Patrick. 2009. Virology Journal, 6 (194), 14 p.

Dating the origins of the maize-adapted strain of maize streak virus, MSV-A. Harkins Gordon William, Martin Darren Patrick, Duffy Siobain, Monjane Adérito Luis, Shepherd Dionne Natalie, Windram Oliver P., Owor Betty E., Donaldson Lara, Van Antwerpen Tania, Sayed Rizwan A., Flett Bradley, Ramusi Moses, Rybicki Edward P., Peterschmitt Michel, Varsani Arvind. 2009. Journal of General Virology, 90 (12) : 3066-3074.

Seasonal density estimates of common large herbivores in Hwange National Park, Zimbabwe. Chamaille-Jammes Simon, Valeix Marion, Bourgarel Mathieu, Murindagomo Félix, Fritz Hervé. 2009. African Journal of Ecology, 47 (4) : 804-808.

Widely conserved recombination patterns among single-stranded DNA viruses. Lefeuvre Pierre, Lett Jean-Michel, Varsani Arvind, Martin Darren Patrick. 2009. Journal of Virology, 83 (6) : 2697-2707.

Novel sugarcane streak and sugarcane streak Reunion mastreviruses from southern Africa and La Réunion. Shepherd Dionne Natalie, Varsani Arvind, Windram Oliver P., Lefeuvre Pierre, Monjane Adérito Luis, Owor Betty E., Martin Darren Patrick. 2008. Archives of Virology, 153 (3) : 605-609.

Panicum streak virus diversity is similar to that observed for maize streak virus. Varsani Arvind, Oluwafemi Sunday, Windram Oliver P., Shepherd Dionne Natalie, Monjane Adérito Luis, Owor Betty E., Rybicki Edward P., Lefeuvre Pierre, Martin Darren Patrick. 2008. Archives of Virology, 153 (3) : 601-604.

Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen. Varsani Arvind, Shepherd Dionne Natalie, Monjane Adérito Luis, Owor Betty E., Erdmann Julia B., Rybicki Edward P., Peterschmitt Michel, Briddon Rob W., Markham Peter G., Oluwafemi Sunday, Windram Oliver P., Lefeuvre Pierre, Lett Jean-Michel, Martin Darren Patrick. 2008. Journal of General Virology, 89 (9) : 2063-2074.

A protocol for the rapid isolation of full geminivirus genomes from dried plant tissue. Shepherd Dionne Natalie, Martin Darren Patrick, Lefeuvre Pierre, Monjane Adérito Luis, Owor Betty E., Rybicki Edward P., Varsani Arvind. 2008. Journal of Virological Methods, 149 (1) : 97-102.

Begomovirus melting pot in the south-west Indian Ocean islands: Molecular diversity and evolution through recombination. Lefeuvre Pierre, Martin Darren Patrick, Hoareau Murielle, Naze Florence, Delatte Hélène, Thierry Magalie, Varsani Arvind, Becker Nathalie, Reynaud Bernard, Lett Jean-Michel. 2007. Journal of General Virology, 88 (12) : 3458-3468.

Transfrontier conservation areas : People living on the edge. Andersson Jens A. (ed.), De Garine-Wichatitsky Michel (ed.), Cumming David H.M. (ed.), Dzingirai Vupenyu (ed.), Giller Ken E. (ed.). 2013. Londres : Earthscan Publications, 238 p.

La forêt comme commun en Afrique Centrale: une lutte de subsistance dans la globalisation. Boutinot Laurence, Baticle Christophe, Dkamela Guy Patrice. 2019. In : Communs, aujourd'hui ! Enjeux planétaires d'une gestion locale des ressources renouvelables. Delmas Bruno (ed.), Le Roy Etienne (ed.), Giraud, Gaël (ed.). Paris : Karthala, 135-157. (Hommes et sociétés) ISBN 978-2-8111-2564-6

From spatial metagenomics to molecular characterization of plant viruses: A geminivirus case study. Claverie Sohini, Bernardo Pauline, Kraberger Simona, Hartnady Penelope, Lefeuvre Pierre, Lett Jean-Michel, Galzi Serge, Filloux Denis, Harkins Gordon William, Varsani Arvind, Martin Darren Patrick, Roumagnac Philippe. 2018. In : Environmental virology and virus ecology. Malmstrom Carolyn M. (ed.). Burlington : Academic Press, 55-83. (Advances in Virus Research, 101) ISBN 978-0-12-814415-2

Africa. Niang Isabelle (ed.), Ruppel Olivier C. (ed.), Dube Pauline (ed.), Leary Neil A. (ed.), Abdrabo Mohamed A. K., Essel Ama, Lennard Christopher, Padgham Jonathan, Urquhart Penny, Adelekan Ibidun (collab.), Archibald Sally (collab.), Balinga Michael (collab.), Barkhordarian Armineh (collab.), Battersby Jane (collab.), Bilir Eren (collab.), Burke Marshall (collab.), Chahed Mohammed (collab.), Chatterjee Monalisa (collab.), Chidiezie Chineke Theo (collab.), Descheemaeker Katrien (collab.), Djoudi Houria (collab.), Ebi Kristie L. (collab.), Demba Fall Papa (collab.), Fuentes Ricardo (collab.), Garland Rebecca (collab.), Gaye Fatou (collab.), Hilmi Karim (collab.), Gbobaniyi Emiloa (collab.), Gonzalez Patrick (collab.), Harvey Blane (collab.), Hayden Mary H. (collab.), Hemp Andreas (collab.), Jobbins Guy (collab.), Johnson Jennifer (collab.), Lobell David B. (collab.), Locatelli Bruno (collab.), Ludi Eva (collab.), Naess Lars Otto (collab.), Ndebele-Murisa Mzime R. (collab.), Ndiaye Aminata (collab.), Newsham Andrew (collab.), Njai Sirra (collab.), Nkem Johnson (collab.), Mukarugwisa Olwoch Jane (collab.), Pauw Pieter (collab.), Pramova Emilia (collab.), Rakotondrafara Marie-Louise (collab.), Raleigh Clionadh (collab.), Roberts Debra (collab.), Roncoli Carla (collab.), Toure Sarr Aissa (collab.), Schleyer Michael Henry (collab.), Schulte-Uebbing Lena (collab.), Schulze Roland (collab.), Seid Hussen (collab.), Shackleton Sheona (collab.), Shongwe Mxolisi (collab.), Stone Dáithí (collab.), Thomas David (collab.), Ugochukwu Okoro (collab.), Victor Dike (collab.), Vincent Katharine (collab.), Warner Koko (collab.), Yaffa Sidat (collab.). 2014. In : Climate change 2014: Impacts, adaptation, and vulnerability. Part B: Regional aspects. Contribution of working group II to the fifth assessment report of the intergovernmental panel of climate change. Barros Vicente R. (ed.), Field Christopher B. (ed.), Dokken David Jon (ed.), Mastrandrea Michael D. (ed.), Mach Katharine J. (ed.), et al.. Cambridge : Cambridge University Press-Intergovernmental Panel on Climate Change, 1199-1265. ISBN 978-1-107-68386-0

Land-and natural resource-based livehood opportunities in TFCAs. Cumming David H.M., Dzingirai Vupenyu, De Garine-Wichatitsky Michel. 2013. In : Transfrontier conservation areas : People living on the edge. Andersson Jens A. (ed.), De Garine-Wichatitsky Michel (ed.), Cumming David H.M. (ed.), Dzingirai Vupenyu (ed.), Giller Ken E. (ed.). Londres : Earthscan Publications, 163-191.

People at wildlife frontiers in Southern Africa. Andersson Jens A., De Garine-Wichatitsky Michel, Cumming David H.M., Dzingirai Vupenyu, Giller Ken E.. 2013. In : Transfrontier conservation areas : People living on the edge. Andersson Jens A. (ed.), De Garine-Wichatitsky Michel (ed.), Cumming David H.M. (ed.), Dzingirai Vupenyu (ed.), Giller Ken E. (ed.). Londres : Earthscan Publications, 1-11.

Whither TFCAs and people on the edge in Southern Africa? Cumming David H.M., Andersson Jens A., De Garine-Wichatitsky Michel, Dzingirai Vupenyu, Giller Ken E.. 2013. In : Transfrontier conservation areas : People living on the edge. Andersson Jens A. (ed.), De Garine-Wichatitsky Michel (ed.), Cumming David H.M. (ed.), Dzingirai Vupenyu (ed.), Giller Ken E. (ed.). Londres : Earthscan Publications, 192-203.

Once upon a time, the VANA story based on the review "virion-associated nucleic acid-based metagenomics : a decade of advances in molecular characterization of plant viruses". Moubset Oumaima, François Sarah, Maclot François, Palanga Essowé, Julian Charlotte, Claude Lisa, Fernandez Emmanuel, Rott Philippe, Daugrois Jean-Heinrich, Antoine-Lorquin Aymeric, Bernardo Pauline, Blouin Arnaud G., Temple Coline, Kraberger Simona, Fontenele Rafaela S, Harkins Gordon William, Ma Yuxin, Marais Armelle, Candresse Thierry, Ben Chehida Sélim, Lefeuvre Pierre, Lett Jean-Michel, Varsani Arvind, Massart Sébastien, Ogliastro Mylène, Martin Darren Patrick, Filloux Denis, Roumagnac Philippe. 2023. In : 19e Rencontres de virologie végétale (RVV2023). Résumés. SFV, SFP, RIVOC, IRD, INRAE, CNRS, CIRAD, Agropolis. Aussois : SFV, Résumé, p. 91. Rencontres de virologie végétale (RVV2023). 19, Aussois, France, 15 Janvier 2023/19 Janvier 2023.

Virome release of an invasive exotic plant species in Southern France. Moubset Oumaima, Filloux Denis, Fontes Hugo, Julian Charlotte, Fernandez Emmanuel, Claude Lisa, Galzi Serge, Chiroleu Frédéric, Mesleard François, Kraberger Simona, Custer Joy M., Salywon Andrew M., Makings Elizabeth, Martin Patrick Darren, Varsani Arvind, Ravigne Virginie, Roumagnac Philippe. 2023. In : 12th International Congress of Plant Pathology (ICPP 2023): One health for all plants, crops and trees. Book of abstracts. ISPP, SFP. Lyon : ISPP, Résumé, 1081-1082. International Conference on Plant Pathology (ICPP 2023). 12, Lyon, France, 20 Août 2023/25 Août 2023.

from boots on the ground to nucleotides in the sequencer: Advances in the study of plant virus ecology using plant virus metagenomics. Fritz Matthieu, Reggiardo Bérénice, Filloux Denis, Claude Lisa, Fernandez Emmanuel, Mahe Frédéric, Kraberger Simona, Custer Joy M., Becquart Pierre, Ndong Mebaley Telstar, Bohou Kombila Linda, Lenguiya Léadisaelle H., Boundenga Larson, Mombo Illich M., Maganda Gael D., Niama Fabien R., Koumba Jean-Sylvain, Ogliastro Mylène, Yvon Michel, Martin Darren Patrick, Blanc Stéphane, Varsani Arvind, Leroy Eric M., Roumagnac Philippe. 2023. In : 12th International Congress of Plant Pathology (ICPP 2023): One health for all plants, crops and trees. Book of abstracts. ISPP, SFP. Lyon : ISPP, Résumé, p. 1081 International Conference on Plant Pathology (ICPP 2023). 12, Lyon, France, 20 Août 2023/25 Août 2023.

Cassava mosaic disease in Madagascar: complex epidemiology and evolutionary dynamics of cassava mosaic geminiviruses. Harimalala Mireille Aurélie, De Bruyn Alexandre, Chiroleu Frédéric, Hoareau Murielle, Zinga Innocent, Ranomenjanahary Sahondramalala, Ravigné Virginie, Reynaud Bernard, Varsani Arvind, Harkins Gordon William, Martin Darren Patrick, Lefeuvre Pierre, Lett Jean-Michel. 2016. In : Building bridges between disciplines for sustainable management of plant virus diseases. INRA, Université d'Avignon. Avignon : INRA, Résumé, 107. International Plant Virus Epidemiology Symposium. 13, Avignon, France, 6 Juin 2016/10 Juin 2016.

Are communities rich in ecological functions favouring diseases transmission in return? Hellard Eléonore, Caron Alexandre, Cumming Graeme S.. 2014. In : Resilience and development: mobilising for transformation. Villeurbanne : Centre pour la Communication Scientifique Directe, 689. Resilience Alliance 2014, Montpellier, France, 4 Mai 2014/8 Mai 2014.

Viral dynamics: notes from plant-infecting ssDNA viruses. Martin Darren Patrick, Harkins Gordon William, Monjane Adérito Luis, Lefeuvre Pierre, Lett Jean-Michel, Van der Walt Eric, Shepherd Dionne Natalie, Rybicki Edward P., Thomas John, Stainton Daisy, Kraberger Simona, Varsani Arvind. 2013. In : Building bridges between disciplines for sustainable management of plant virus diseases. Lava Kumar P. (ed), Lopez Katherine (ed.), Njuguma Catherine (ed.). ICTVE, IITA. Ibadan : IITA, Résumé, p. 72. ISBN 978-978-8444-08-4 International Plant Virus Epidemiology Symposium. 12, Arusha, Tanzanie, 28 Janvier 2013/1 Février 2013.

Another night at the museum: searching for traces of plant viruses using the virion-associated nucleic acid metagenomics approach. [P.21]. Julian Charlotte, Filloux Denis, Rieux Adrien, Lefeuvre Pierre, Lett Jean-Michel, Becker Nathalie, Gagnevin Lionel, Trinder-Smith Terry H., Hartnady Penelope, Martin Darren Patrick, Roumagnac Philippe. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, 80. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 Janvier 2019/31 Janvier 2019.

Global geographical distribution of capulaviruses. [P.42]. Galzi Serge, Filloux Denis, Richet Cécile, Julian Charlotte, Ferdinand Romain, Davoodi Zohreh, Bejerman Nicolás, Kumari Safaa G., Chatzivassiliou Elisavet K., Fiallo-Olivé Elvira, Navas-Castillo Jesús, Susi Hanna, Laine Anna-Liisa, Varsani Arvind, Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, 101. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 Janvier 2019/31 Janvier 2019.

Metagenomics-based discovery and molecular characterization of novel geminiviruses from two Mediterranean-climate biodiversity hotspots. [P57]. Galzi Serge, Bernardo Pauline, Fernandez Emmanuel, Julian Charlotte, Ferdinand Romain, Harkins Gordon William, Peterschmitt Michel, Martin Darren Patrick, Filloux Denis, Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, 118. Rencontres de virologie végétale, Aussois, France, 15 Janvier 2017/19 Janvier 2017.

Using preserved herbarium specimens to analyse past viral diversity: preliminary methodological results. [P53]. Julian Charlotte, Fernandez Emmanuel, Lefeuvre Pierre, Lett Jean-Michel, Bernardo Pauline, Malmstrom Carolyn M., Martin Darren Patrick, Filloux Denis, Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, 114. Rencontres de virologie végétale, Aussois, France, 15 Janvier 2017/19 Janvier 2017.

The genomes of several plant species contain endogenous geminiviral sequences. Filloux Denis, Murrell Sasha, Koohapitagtam M., Golden Michael, Julian Jacqueline, Galzi Serge, Uzest Marilyne, Rodier-Goud Marguerite, D'Hont Angélique, Vernerey Marie-Stéphanie, Wilkin P., Peterschmitt Michel, Winter Stephan, Murrell Ben, Martin Darren Patrick, Roumagnac Philippe. 2016. In : 8th International Geminivirus Symposium. University of Delhi, Jawaharlal Nehru University, Jamia Millia Islamia, ICAR-NRCPB , NIPGR, Indian Virological Society. s.l. : s.n., 1. International Geminivirus Symposium. 8, New Delhi, Inde, 7 Novembre 2016/10 Novembre 2016.

Cloud water interception and resilience of tropical montane bryophytes to climate change in cloud forests of La Reunion. Ah-Peng Claudine, Guérot Louise, Figenschou Laura, Doizy Anna, Stamenoff Pierre, Hedderson Terry A.j.. 2019. In : Book of abstracts talks of of the third international conference on Island ecology, evolution and conservation. Flores Olivier (ed.), Ah-Peng Claudine (ed.), Wilding Nicholas (ed.). Université de la Réunion. Saint-Denis : Université de la Réunion, Résumé, 129. International conference on Island ecology, evolution and conservation. 3, Saint-Denis, Réunion, 8 Juillet 2019/13 Juillet 2019.

Deciphering plant virus ecology and evolution using metagenomics-based approaches. Filloux Denis, Lefeuvre Pierre, Lett Jean-Michel, Varsani Arvind, Harkins Gordon William, Malmstrom Carolyn M., Martin Darren Patrick, Roumagnac Philippe. 2019. . State College : s.n., Résumé, 1 p. International Congress on Virus Evolution. 10, State College, États-Unis, 7 Mars 2019/9 Mars 2019.

Description of the diversity and structure of mastrevirus communities at the scale of an agrosystem in La Réunion based on a metagenomic approach. Claverie Sohini, Scussel Sarah, Hoareau Marie Murielle, Hascoat Jérémy, Lebreton Gérard, Grondin Martial, Filloux Denis, Roumagnac Philippe, Martin Darren Patrick, Lett Jean-Michel, Lefeuvre Pierre. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, 48. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 Janvier 2019/31 Janvier 2019.

Diversity and structure of Poaceae-infecting mastreviruses communities on Reunion Island using a viral metagenomics-based approach. Claverie Sohini, Scussel Sarah, Hoareau Murielle, Hascoat Jérémy, Lebreton Gérard, Grondin Martial, Filloux Denis, Roumagnac Philippe, Martin Darren Patrick, Lett Jean-Michel, Lefeuvre Pierre. 2019. In : Programme and abstracts of the 9th International Germinivirus Symposium (IGS 2019) and the 7th ssDNA Comparative virology workshop. University of California. Davis : University of California, Résumé, 44. International Geminivirus Symposium. 9, Davis, États-Unis, 9 Novembre 2019/13 Novembre 2019.

Hidden diversity of endogenous geminiviral sequences across plant genomes and transcriptomes. Sharma Vikas, Roumagnac Philippe, Filloux Denis, Lefeuvre Pierre, Teycheney Pierre-Yves, Martin Darren Patrick, Maumus Florian. 2019. In : Programme and abstracts of the 9th International Germinivirus Symposium (IGS 2019) and the 7th ssDNA Comparative virology workshop. University of California. Davis : University of California, Résumé, 58. International Geminivirus Symposium. 9, Davis, États-Unis, 9 Novembre 2019/13 Novembre 2019.

Nanopore-based detection and characterization of yam viruses. Filloux Denis, Fernandez Emmanuel, Loire Etienne, Claude Lisa, Galzi Serge, Candresse Thierry, Winter Stephan, Jeeva M.L., Makeshkumar T., Martin Darren Patrick, Roumagnac Philippe. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, 53. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 Janvier 2019/31 Janvier 2019.

Night at the museum: Contribution of small RNA from historical herbarium specimens in the reconstruction of evolutionary histories of geminiviruses. Lett Jean-Michel, Scussel Sarah, Campos Paola, Filloux Denis, Roumagnac Philippe, Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe, Martin Darren Patrick, Lefeuvre Pierre, Rieux Adrien, Becker Nathalie. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, 52. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 Janvier 2019/31 Janvier 2019.

Night at the museum: Contribution of small RNA from historical herbarium specimens in the reconstruction of evolutionary histories of geminiviruses. Rieux Adrien, Campos Paola, Scussel Sarah, Duvermy Arnaud, Filloux Denis, Roumagnac Philippe, Martin Darren Patrick, Becker Nathalie, Lett Jean-Michel. 2019. In : Programme and abstracts of the 9th International Germinivirus Symposium (IGS 2019) and the 7th ssDNA Comparative virology workshop. University of California. Davis : University of California, Résumé, 36. International Geminivirus Symposium. 9, Davis, États-Unis, 9 Novembre 2019/13 Novembre 2019.

Symptom evolution following the emergence of maize streak virus. Monjane Adérito Luis, Dellicour Simon, Hartnady Penelope, Oyeniran Kehinde A., Owor Betty E., Bezeidenhout Marion, Linderme Daphné, Syed Rizwan Ali, Donaldson Lara, Murray Shane, Rybicki Edward P., Kvarnheden Anders, Yazdkhasti Elhman, Lefeuvre Pierre, Froissart Rémy, Roumagnac Philippe, Shepherd Dionne Natalie, Harkins Gordon William, Suchard Marc, Lemey Philippe, Varsani Arvind, Martin Darren Patrick. 2019. In : Programme and abstracts of the 9th International Germinivirus Symposium (IGS 2019) and the 7th ssDNA Comparative virology workshop. University of California. Davis : University of California, Résumé, 21-22. International Geminivirus Symposium. 9, Davis, États-Unis, 9 Novembre 2019/13 Novembre 2019.

Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale. O13. Bernardo Pauline, Charles-Dominique Tristan, Barakat Mohamed, Ortet Philippe, Fernandez Emmanuel, Filloux Denis, Hartnady Penelope, Rebelo Tony A., Cousins Stephen, Mesleard François, Cohez Damien, Yaverkovski Nicole, Varsani Arvind, Harkins Gordon William, Peterschmitt Michel, Malmstrom Carolyn, Martin Darren Patrick, Roumagnac Philippe. 2018. In : Book of abstract Pathobiome 2018. INRA. Ajaccio : INRA, Résumé, 25-26. Pathobiome, Ajaccio, France, 18 Mars 2018/20 Mars 2018.

Deciphering plant-associated viruses at the agroecosystem scale using geometagenomics. Charles-Dominique Tristan, Fernandez Emmanuel, Filloux Denis, Ortet Philippe, Barakat Mohamed, Rebelo Tony A., Varsani Arvind, Malmstrom Carolyn M., Martin Darren Patrick, Roumagnac Philippe. 2016. . University of Helsinki. Helsinki : University of Helsinki, Résumé, 1 p. International Meeting on Wild Plant Pathosystems. 2, Helsinki, Finlande, 29 Août 2016/31 Août 2016.

The spread of tomato yellow leaf curl virus from the middle east to the World. Lefeuvre Pierre, Martin Darren Patrick, Harkins Gordon William, Lemey Philippe, Gray Alistair J.A., Meredith Sandra, Lakay Francisco, Monjane Adérito Luis, Lett Jean-Michel, Varsani Arvind. 2011. In : 13èmes Rencontres de virologie végétale (RVV 2011), Aussois, France, 16-20 janvier 2011. SFP. s.l. : s.n., 1 p. Rencontres de virologie végétale. 13, Aussois, France, 16 Janvier 2011/20 Janvier 2011.