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Number of items: 83.

Journal article

Modelling transport of inhibiting and activating signals and their combined effects on floral induction: Application to apple tree. Belhassine Fares, Fumey Damien, Chopard Jérôme, Pradal Christophe, Martinez Sébastien, Costes Evelyne, Pallas Benoît. 2020. Scientific Reports, 10:13085, 14 p.
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MuSCA: A multi-scale source–sink carbon allocation model to explore carbon allocation in plants. An application to static apple tree structures. Reyes F., Pallas Benoît, Pradal Christophe, Vaggi Federico, Zanotelli Damiano, Tagliavini Massimo, Gianelle Damiano, Costes Evelyne. 2020. Annals of Botany, 126 (4), n.spéc. Functional-Structural Plant Growth Modelling : pp. 571-585.
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Reuse of process-based models: Automatic transformation into many programming languages and simulation platforms. Midingoyi Cyrille Ahmed, Pradal Christophe, Athanasiadis Ioannis, Donatelli Marcello, Enders Andreas, Fumagalli Davide, Garcia Frédérick, Holzworth Dean, Hoogenboom Gerrit, Porter Cheryl, Raynal Hélène, Thorburn Peter J., Martre Pierre. 2020. In Silico Plants (diaa007), 43 p.
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Simulating the effects of water limitation on plant biomass using a 3D functional-structural plant model of shoot and root driven by soil hydraulic. Braghiere Renato K., Gérard Frédéric, Evers Jochem, Pradal Christophe, Pagès Loïc. 2020. Annals of Botany, 126 (4):n.spéc. Functional-Structural Plant Growth Modelling : pp. 713-728.

A functional structural model of grass development based on metabolic regulations and coordination rules. Gauthier Marion, Barillot Romain, Schneider Camille, Chambon Camille, Fournier Christian, Pradal Christophe, Robert Corinne, Andrieu Bruno. 2020. Journal of Experimental Botany, 71 (18) : pp. 5454-5468.
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Changes in the vertical distribution of leaf area enhanced light interception efficiency in maize over generations of maize selection. Perez Raphaël, Fournier Christian, Cabrera-Bosquet Llorenç, Artzet Simon, Pradal Christophe, Brichet Nicolas, Chen Tsu-Wei, Chapuis Romain, Welcker Claude, Tardieu François. 2019. Plant, Cell and Environment, 42 (7) : pp. 2105-219.
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Current knowledge and future research opportunities for modeling annual crop mixtures. A review. Gaudio Noemie, Escobar-Gutièrrez Abraham, Casadebaig Pierre, Evers Jochem, Gérard Frédéric, Louarn Gaëtan, Colbach Nathalie, Munz Sebastian, Launay Marie, Marrou Hélène, Barillot Romain, Hinsinger Philippe, Bergez Jacques-Eric, Combes Didier, Durand Jean-Louis, Frak Elzbieta, Pagès Loïc, Pradal Christophe, Saint-Jean Sébastien, Van Der Werf Wopke, Justes Eric. 2019. Agronomy for Sustainable Development, 39 (2):20, 20 p.
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Genetic and environmental dissection of biomass accumulation in multi-genotype maize canopies. Chen Tsu-Wei, Cabrera-Bosquet Llorenç, Alvarez Prado Santiago, Perez Raphaël, Artzet Simon, Pradal Christophe, Coupel-Ledru Aude, Fournier Christian, Tardieu François. 2019. Journal of Experimental Botany, 70 (9) : pp. 2523-2534.
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HydroShoot: A functional-structural plant model for simulating hydraulic structure, gas and energy exchange dynamics of complex plant canopies under water deficit - application to grapevine (Vitis vinifera L.). Albasha Rami, Fournier Christian, Pradal Christophe, Chelle Michaël, Prieto J., Louarn Gaëtan, Simonneau Thierry, Lebon Eric. 2019. In Silico Plants, 1 (1):diz007, 44 p.
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Investigation of complex canopies with a functional–structural plant model as exemplified by leaf inclination effect on the functioning of pure and mixed stands of wheat during grain filling. Barillot Romain, Chambon Camille, Fournier Christian, Combes Didier, Pradal Christophe, Andrieu Bruno. 2019. Annals of Botany, 123 (4) : pp. 727-742.
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VersionClimber: Version Upgrades Without Tears. Pradal Christophe, Cohen-Boulakia Sarah, Valduriez Patrick, Shasha Dennis, Hinsen Konrad. 2019. Computing in Science and Engineering, 21 (5) : pp. 87-93.
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AutoWIG: Automatic generation of python bindings for C++ libraries. Fernique Pierre, Pradal Christophe. 2018. PeerJ Computer Science, 4:e149, 31 p.
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Distributed management of scientific workflows for high-throughput plant phenotyping. Pradal Christophe, Cohen-Boulakia Sarah, Heidsieck Gaetan, Pacitti Esther, Tardieu François, Valduriez Patrick. 2018. ERCIM News (113), n.spéc. Smart Farming : pp. 36-37.
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Modelling interaction dynamics between two foliar pathogens in wheat: A multi-scale approach. Garin Guillaume, Pradal Christophe, Fournier Christian, Claessen David, Houlès Vianney, Robert Corinne. 2018. Annals of Botany, 121 (5) : pp. 927-940.
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Plant architecture and foliar senescence impact the race between wheat growth and Zymoseptoria tritici epidemics. Robert Corinne, Garin Guillaume, Abichou Mariem, Houlès Vianney, Pradal Christophe, Fournier Christian. 2018. Annals of Botany, 121 (5) : pp. 975-989.
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InfraPhenoGrid: A scientific workflow infrastructure for plant phenomics on the Grid. Pradal Christophe, Artzet Simon, Chopard Jérôme, Dupuis Dimitri, Fournier Christian, Mielewczik Michael, Nègre Vincent, Neveu Pascal, Parigot Didier, Valduriez Patrick, Cohen-Boulakia Sarah. 2017. Future Generation Computer Systems, 67 : pp. 341-353.
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Morphological plant modeling: Unleashing geometric and topological potential within the plant sciences. Bucksch Alexander, Atta-Boateng Acheampong, Azihou Akomian Fortuné, Battogtokh Dorjsuren, Baumgartner Aly, Binder Brad M., Braybrook Siobhan, Chang Cynthia, Coneva Viktoirya, DeWitt Thomas J., Fletcher Alexander G., Gehan Malia A., Diaz-Martinez Diego Hernan, Hong Lilan, Iyer-Pascuzzi Anjali S., Klein Laura L., Leiboff Samuel, Li Mao, Lynch Jonathan P., Maizel Alexis, Maloof Julin N., Markelz R.J. Cody, Martinez Ciera C., Miller Laura A., Mio Washington, Palubicki Wojciech, Poorter Hendrik, Pradal Christophe, Price Charles A., Puttonen Eetu, Reese John B., Rellán-Alavarez Rubén, Spalding Edgar P., Sparks Erin E., Topp Christopher N., Williams Joseph H., Chitwood Daniel H.. 2017. Frontiers in Plant Science, 8:900, 16 p.
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Reshaping plant biology: Qualitative and quantitative descriptors for plant morphology. Balduzzi Mathide, Binder Brad M., Bucksch Alexander, Chang Cynthia, Hong Lilan, Lyer-Pascuzzi Anjali, Pradal Christophe, Sparks Erin E.. 2017. Frontiers in Plant Science, 8:117, 15 p.
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Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. Cohen-Boulakia Sarah, Belhajjame Khalid, Collin Olivier, Chopard Jérôme, Froidevaux Christine, Gaignard Alban, Hinsen Konrad, Larmande Pierre, Le Bras Yvan, Lemoine Frédéric, Mareuil Fabien, Ménager Hervé, Pradal Christophe, Blanchet Christophe. 2017. Future Generation Computer Systems, 75 : pp. 284-298.
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Virtual plants need water too: Functional-structural root system models in the context of drought tolerance breeding. Ndour Adama, Vadez Vincent, Pradal Christophe, Lucas Mikaël. 2017. Frontiers in Plant Science, 8 (1577), 18 p.
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A robot-assisted imaging pipeline for tracking the growths of maize ear and silks in a high-throughput phenotyping platform. Brichet Nicolas, Fournier Christian, Turc Olivier, Strauss Olivier, Artzet Simon, Pradal Christophe, Welcker Claude, Tardieu François, Cabrera-Bosquet Llorenç. 2017. Plant Methods, 13:96, 12 p.
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Root system markup language: Toward a unified root architecture description language. Lobet Guillaume, Pound Michael P., Diener Julien, Pradal Christophe, Draye Xavier, Godin Christophe, Javaux Mathieu, Leitner Daniel, Meunier Félicien, Nacry Philippe, Pridmore Tony P., Schnepf Andrea. 2015. Plant Physiology, 167 (3) : pp. 617-627.
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A modelling framework to simulate foliar fungal epidemics using functional-structural plant models. Garin Guillaume, Fournier Christian, Andrieu Bruno, Houlès Vianney, Robert Corinne, Pradal Christophe. 2014. Annals of Botany, 114 (4) : pp. 795-812.
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Publishing scientific software matters [Preface]. Pradal Christophe, Varoquaux Gaël, Langtangen Hans Peter. 2013. Journal of Computational Science, 4 (5) : pp. 311-312.
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L-Py: an L-system simulation framework for modeling plant architecture development based on a dynamic language. Boudon Frédéric, Pradal Christophe, Cokelaer Thomas, Prusinkiewicz Przemyslaw, Godin Christophe. 2012. Frontiers in Plant Science, 3 (76), 20 p.
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A novel profile based model for virtual representation of quasi-symmetric plant organs. Mebatsion H.K., Boudon Frédéric, Godin Christophe, Pradal Christophe, Génard Michel, Goz-Bac C., Bertin Nadia. 2011. Computers and Electronics in Agriculture, 75 (1) : pp. 113-124.
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PlantGL : A python-based geometric library for 3D plant modelling at different scales. Pradal Christophe, Boudon Frédéric, Nouguier Christophe, Chopard Jérôme, Godin Christophe. 2009. Graphical Models, 71 : pp. 1-21.
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Sharing efforts for modelling plant systems: from publications to reusable software components. Fournier Christian, Pradal Christophe, Chelle Michaël, Boudon Frédéric, Louarn Gaëtan, Robert Corinne, Combes Didier, Cokelaer Thomas, Bertheloot Jessica, Ma Kai, Saint-Jean Sébastien, Verdenal Alban, Escobar-Gutièrrez Abraham, Andrieu Bruno, Godin Christophe. 2009. Comparative Biochemistry and Physiology. Part A, Molecular and Integrative Physiology, 153 (2), suppl.n°1, Résumé, S222
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OpenAlea: a visual programming and component-based software platform for plant modelling. Pradal Christophe, Dufour-Kowalski Samuel, Boudon Frédéric, Fournier Christian, Godin Christophe. 2008. Functional Plant Biology, 35 (9-10) : pp. 751-760. International Workshop on Functional-Structural Plant Models. 5, Napier, Nouvelle-Zélande, 4 November 2007/9 November 2007.
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Estimating the fractal dimension of plants using the two-surface method: An analysis based on 3D-digitized tree foliage. Boudon Frédéric, Godin Christophe, Pradal Christophe, Puech Olivier, Sinoquet Hervé. 2006. Fractals, 14 (3) : pp. 149-163.
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Paper with proceedings

Adaptive caching for data-intensive scientific workflows in the cloud. Heidsieck Gaetan, De Oliveira Daniel, Pacitti Esther, Pradal Christophe, Tardieu François, Valduriez Patrick. 2019. In : Database and expert systems applications. DEXA 2019. Hartmann Sven (ed.), Küng Josef (ed.), Chakravarthy Sharma (ed.), Anderst-Kotsis Gabriele (ed.), Tjoa A. Min (ed.), Khalil Ismail (ed.). Cham : Springer, pp. 452-466. (Lecture Notes in Computer Science, 11707, 11707) ISBN 978-3-030-27617-1 International Conference on Database and Expert Systems Applications (DEXA 2019). 30, Linz, Autriche, 26 August 2019/29 August 2019.
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Towards a model of wheat leaf morphogenesis at plant scale driven by organ-level metabolites. Gauthier M., Barillot Romain, Schneider Anne, Fournier Christian, Pradal Christophe, Pinet Amélie, Andrieu Bruno. 2018. In : Electronic proceedings of 2018 6th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA). Anhui Agricultural University, INRA. Hefei : IEEE, pp. 94-101. ISBN 978-1-5386-7817-6 International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA18). 6, Hefei, Chine, 4 November 2018/8 November 2018.
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Using crop-pathogen modeling to identify plant traits to control Zymoseptoria tritici epidemics on wheat. PIV-58. Gigot Christophe, Claessen David, Garin Guillaume, Fournier Christian, Pradal Christophe, Robert Corinne. 2018. In : Congress Abstracts of EUCARPIA Cereal section Meeting and 2nd International wheat innovation workshop. Thierry Langin (ed.), Gilles Charmet (ed.), Jacques Le Gouis (ed.), Philippe Leroy (ed.). Clermont-Ferrand : INRA, Résumé, p. 113. ISBN 978-2-9563873-0-5 EUCARPIA Cereal section Meeting "Breeeding cereals for sustainable agriculture, Clermont-Ferrand, France, 19 March 2018/22 March 2018.
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An architecture for the integration of different functional and structural plant models. Long Qinqin, Migault Vincent, Kurth Winfried, Pallas Benoît, Pradal Christophe. 2018. In : International Conference IEEA 18, March 28–31, 2018, Beijing, China. ACM. New York : ACM, pp. 107-113. ISBN 978-1-4503-6362-4 International Conference on Informatics, Environment, Energy and Applications (IEEA 2018). 7, Pékin, Chine, 28 March 2018/31 March 2018.
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The role of hydraulics FSPMs in the context of root breeding : a case study on Pearl Millet. Ndour Adama, Pradal Christophe, Vadez Vincent, Passot Sixtine, Guédon Yann, Laplaze Laurent, Lucas Mikaël. 2018. In : European Geosciences Union General Assembly 2018- volume 20. EGU. Vienne : European Geosciences Union, 1 p. EGU2018 - European Geophysical Union General Assembly 2018, Vienne, Autriche, 8 April 2018/13 April 2018.
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Characterization of mango tree patchiness using a tree-segmentation/clustering approach. Fernique Pierre, Dambreville Anaëlle, Durand Jean-Baptiste, Pradal Christophe, Lauri Pierre-Eric, Normand Frédéric, Guédon Yann. 2016. In : 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA). IEEE, FSPMA. Qingdao : IEEE, pp. 68-74. ISBN 978-1-5090-1659-4 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Qingdao, Chine, 7 November 2016/11 November 2016.
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High-throughput phenotyping platform reveals genetic variability and quantitative trait loci of light-related parameters in maize models. Chen Tsu-Wei, Fournier Christian, Artzet Simon, Brichet Nicolas, Chopard Jérôme, Pradal Christophe, Alvarez-Prado Santiago, Cabrera-Bosquet Llorenç, Welcker Claude, Tardieu François. 2016. In : Seeking Sustainable Agricultural Solutions AgMIP6 Global Workshop: Oral and poster abstracts. Montpellier : AgMIP, Résumé, p. 55. Global Workshop of the Agricultural Model Intercomparison and Improvement Project (AgMIP), Montpellier, France, 28 June 2016/30 June 2016.
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HydroShoot: a new FSPM model for simulating hydraulic structure and gas-exchange dynamics of complex plants canopies under water deficit. Albasha Rami, Fournier Christian, Pradal Christophe, Prieto J., Louarn Gaëtan, Lebon Eric. 2016. In : 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016). Qingdao : s.n., 1 p. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Qingdao, Chine, 7 November 2016/11 November 2016.
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Multiscale functional-structural plant modelling at the example of apple trees: Project description. Bayol Benoît, Cournède Paul-Henry, Sainte-Marie Julien, Viaud Gautier, Chi Faustino, Kurth Winfried, Long Qinqin, Merklein Johannes, Streit Katarína, Costes Evelyne, Migault Vincent, Pallas Benoît, Buck-Sorlin Gerhard H., Poirier Magalie, Pradal Christophe. 2016. In : 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA). IEEE, FSPMA. Qingdao : IEEE, pp. 1-5. ISBN 978-1-5090-1659-4 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Qingdao, Chine, 7 November 2016/11 November 2016.
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Reducing algorithm complexity in trees. Godin Christophe, Boudon Frédéric, Pradal Christophe. 2016. In : 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016): Book of abstract oral. FSPMA. Qingdao : FSPMA, Résumé, p. 52. International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, Qingdao, Chine, 7 November 2016/11 November 2016.
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Using combined virtual plant - pathogen models to compare the influence of wheat architecture on epidemics of two contrasted foliar fungi. Garin Guillaume, Fournier Christian, Pradal Christophe, Houlès Vianney, Robert Corinne. 2016. In : 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016). IEEE. Qingdao : IEEE, p. 18. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Qingdao, Chine, 7 November 2016/11 November 2016.
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OpenAlea: scientific workflows combining data analysis and simulation. Pradal Christophe, Fournier Christian, Valduriez Patrick, Cohen-Boulakia Sarah. 2015. In : Proceedings of the 27th International Conference on Scientific and Statistical Database Management. Gupta Amarnath (ed.), Rathbun Susan (ed.). New York : ACM, 6 p. ISBN 978-1-4503-3709-0 International Conference on Scientific and Statistical Database Management. 27, San Diego, États-Unis, 29 June 2015/1 July 2015.
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A multi-scale model to explore carbon allocation in plants. Reyes F., Gianelle Damiano, Pallas Benoît, Costes Evelyne, Pradal Christophe, Tagliavini Massimo, Zanotelli Damiano. 2015. In : Proceedings of the X International Symposium on Modelling in Fruit Research and Orchard Management. Costes Evelyne (ed.). ISHS. Louvain : ISHS, Résumé, pp. 285-292. (Acta Horticulturae, 1160) ISBN 978-94-6261-1566 International Symposium on Modelling in Fruit Research and Orchard Management. 10, Montpellier, France, 2 June 2015/5 June 2015.
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Deciphering mango tree asynchronisms using Markov tree and probabilistic graphical models. Dambreville Anaëlle, Fernique Pierre, Pradal Christophe, Lauri Pierre-Eric, Normand Frédéric, Guédon Yann, Durand Jean-Baptiste. 2013. In : Proceedings of the 7th International Conference on Functional-Structural Plant Models (FSPM2013), Saariselkä, Finland, 9-14 June 2013. Eds. Risto Sievänen, Eero Nikinmaa, Christophe Godin, Anna Lintunen, Pekka Nygren. Vantaa : Finnish Society of Forest Science, pp. 210-212. ISBN 978-951-651-408-9 International Conference on Functional-Structural Plant Models. 7, Saariselkä, Finlande, 9 June 2013/14 June 2013.
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OpenAlea 2.0: Architecture of an integrated modeling environment on the web. Pradal Christophe, Coste Julien, Boudon Frédéric, Fournier Christian, Godin Christophe. 2013. In : Proceedings of the 7th International Conference on Functional-Structural Plant Models (FSPM2013), Saariselkä, Finland, 9-14 June 2013. Eds. Risto Sievänen, Eero Nikinmaa, Christophe Godin, Anna Lintunen, Pekka Nygren. Vantaa : Finnish Society of Forest Science, p. 213. ISBN 978-951-651-408-9 International Conference on Functional-Structural Plant Models. 7, Saariselkä, Finlande, 9 June 2013/14 June 2013.
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A generic model of interactions between FSPM, foliar pathogens and microclimate. Garin Guillaume, Pradal Christophe, Andrieu Bruno, Houlès Vianney, Robert Corinne, Fournier Christian. 2013. In : Proceedings of the 7th International Conference on Functional-Structural Plant Models (FSPM2013), Saariselkä, Finland, 9-14 June 2013. Eds. Risto Sievänen, Eero Nikinmaa, Christophe Godin, Anna Lintunen, Pekka Nygren. Vantaa : Finnish Society of Forest Science, pp. 339-341. ISBN 978-951-651-408-9 International Conference on Functional-Structural Plant Models. 7, Saariselkä, Finlande, 9 June 2013/14 June 2013.
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An integrated and modular model for simulating and evaluating how canopy architecture can help reduce fungicide applications. Fournier Christian, Pradal Christophe, Abichou Mariem, Andrieu Bruno, Bancal Marie-Odile, Bedos Carole, Benoit Pierre, Chambon Camille, Chapuis Romain, Cotteux Eric, Mamy Laure, Paveley Neil, Pot Valérie, Saint-Jean Sébastien, Richard Claire, Sinfort Carole, Ter Halle Alexandra, Van Den Berg Eric, Walker Anne Sophie. 2013. In : Proceedings of the 7th International Conference on Functional-Structural Plant Models (FSPM2013), Saariselkä, Finland, 9-14 June 2013. Eds. Risto Sievänen, Eero Nikinmaa, Christophe Godin, Anna Lintunen, Pekka Nygren. Vantaa : Finnish Society of Forest Science, pp. 345-348. ISBN 978-951-651-408-9 International Conference on Functional-Structural Plant Models. 7, Saariselkä, Finlande, 9 June 2013/14 June 2013.
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Investigating the influence of geometrical traits on light interception efficiency of apple trees: a modelling study with MAppleT. Han Liqi, Costes Evelyne, Boudon Frédéric, Cokelaer Thomas, Pradal Christophe, Da Silva David, Faivre Robert. 2012. In : Plant growth modeling, simulation, visualization and applications. Proceedings PMA12 : The Fourth International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Shanghai, China, 31 October-3 November 2012. Kang Meng Zhen (ed.), Dumont Yves (ed.), Guo Yan (ed.). Piscataway : IEEE, pp. 152-159. ISBN 978-1-4673-0068-1 International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA12). 4, Shanghai, Chine, 31 October 2012/3 November 2012.
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A plastic, dynamic and reducible 3D geometric model for simulating gramineous leaves. Fournier Christian, Pradal Christophe. 2012. In : Plant growth modeling, simulation, visualization and applications. Proceedings PMA12 : The Fourth International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Shanghai, China, 31 October-3 November 2012. Kang Meng Zhen (ed.), Dumont Yves (ed.), Guo Yan (ed.). Piscataway : IEEE, pp. 125-132. ISBN 978-1-4673-0068-1 International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA12). 4, Shanghai, Chine, 31 October 2012/3 November 2012.
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Scientific workflow for reusing plant/FSPM models. Chopard Jérôme, Pradal Christophe, Barbeau Daniel, Cokelaer Thomas, Godin Christophe. 2011. In : 19th International Congress on Modelling and Simulation (MODSIM2011), Perth, Australia, 12 to 16 December 2011. Chan F. (ed.), Marinova D. (ed.), Anderssen R.S. (ed.). Canberra : MSSANZ, pp. 968-974. ISBN : 978-0-9872143-1-7 International Congress on Modelling and Simulation. 19, Perth, Australie, 12 December 2011/16 December 2011.
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Modeling directional anisotropy of thermal infrared measurements over a pine forest canopy. Kurz Britta, Lagouarde Jean-Pierre, Moreau Patrick, Guyon Dominique, Champion Isabelle, Ogée Jérôme, Boudon Frédéric, Caraglio Yves, Godin Christophe, Pradal Christophe. 2006. In : Second recent advances in quantitative remote sensing (RAQRS'II), Auditori de Torrent, Spain, 25-29 September 2006. Sobrino José A. (ed.). Universidad de Valencia. Valence : Universitat de Valencia, pp. 320-325. ISBN 978-84-370-6533-5 International Symposium on Recent Advances in Quantitative Remote Sensing. 2, Valence, Espagne, 25 September 2006/29 September 2006.
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Poster

Exploring carbon allocation with a multi-scale model: the case of apple. Reyes Francisco, Pallas Benoît, Pradal Christophe, Zanotelli Damiano, Boudon Frédéric, Vaggi Federico, Saudreau Marc, Tagliavini Massimo, Gianelle Damiano, Costes Evelyne. 2016. In : Book of abstracts poster: 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016). FSPM, PMA. Qingdao : FSPMA, p. 84. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Qingdao, Chine, 7 November 2016/11 November 2016.
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GroIMP / OpenAlea Interface: towards a formal protocol for cross-platform modelling. Long Qinqin, Pradal Christophe, Migault Vincent, Merklein Johannes, Kurth Winfried. 2016. . Qingdao : FSPMA, 1 poster IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Qingdao, Chine, 7 November 2016/11 November 2016.
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OpenAleaLab: An open-source multi-paradigm - multi-language software framework for modeling morphogenesis. Pradal Christophe, Coste Julien, Baty Guillaume, Ribes Sophie, Boudon Frédéric, Godin Christophe. 2016. In : Book of abstracts poster: 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016). FSPM, PMA. Qingdao : FSPMA, p. 80. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Qingdao, Chine, 7 November 2016/11 November 2016.
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Toward the inter-comparison of radiation transfer model for plant modelling application. Fournier Christian, Boudon Frédéric, Chelle Michaël, Saudreau Marc, Ngao Jérôme, Louarn Gaëtan, Combes Didier, Pradal Christophe. 2016. In : Book of abstracts poster: 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016). FSPM, PMA. Qingdao : FSPMA, p. 89. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Qingdao, Chine, 7 November 2016/11 November 2016.
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Phenomenal: a software framework for model-assisted analysis of high throughput plant phenotyping data. Fournier Christian, Artzet Simon, Chopard Jérôme, Mielewczik Michael, Brichet Nicolas, Cabrera Llorenç, Sirault X., Cohen-Boulakia Sarah, Pradal Christophe. 2015. . Louvain-la-Neuve : IAMPS, 2 p. International Workshop on Image Analysis Methods for the Plant Sciences (IAMPS). 4, Louvain-la-Neuve, Belgique, 21 September 2015/22 September 2015.
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Paper without proceedings

The Agricultural Model Exchange Initiative. Martre Pierre, Donatelli Marcello, Pradal Christophe, Enders Andreas, Ahmed Midingoyi Cyrille, Athanasiadis Ioannis, Fumagalli Davide, Holzworth Dean, Hoogenboom Gerrit, Porter Cheryl, Raynal Hélène, Rizzoli Andrea E., Thorburn Peter J.. 2018. In : Abstracts of the 7th AgMIP Global Workshop. IICA. San José : IICA, Résumé, pp. 17-18. AgMIP Global Workshop. 7, San José, Costa Rica, 24 April 2018/26 April 2018.
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Genetic variability in light-related parameters of maize models revealed by linking 3D-reconstruction of plant architecture with light model and phenotyping platform. Chen Tsu-Wei, Fournier Christian, Artzet Simon, Brichet Nicolas, Chopard Jérôme, Pradal Christophe, Alvarez-Prado Santiago, Cabrera-Bosquet Llorenç, Welcker Claude, Tardieu François. 2016. In : IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016). Qingdao : s.n., 1 p. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Qingdao, Chine, 7 November 2016/11 November 2016.
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A functional structural model of wheat leaf metabolism during extension. Schneider Anne, Barillot Romain, Chambon Camille, Fournier Christian, Pradal Christophe, Andrieu Bruno. 2016. In : 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016). Qingdao : s.n., 1 p. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Qingdao, Chine, 7 November 2016/11 November 2016.
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ECHAP : un projet pour identifier les possibilités de réduction de l'utilisation des fongicides en utilisant l'architecture des couverts. Robert Corinne, Fournier Christian, Abichou Mariem, Andrieu Bruno, Bancal Marie-Odile, Barriuso Enrique, Bedos Carole, Benoit Pierre, Bergheaud V., Bidon M., Bonicelli Bernard, Chambon Camille, Chapuis Romain, Cotteux Eric, Da Costa J., Durand Brigitte, Gagnaire Nathalie, Gaudillat Damien, Gigot Christophe, Girardin Guillaume, Gouache David, Jean Jacques Josiane, Mamy Laure, Ney Bertrand, Paveley Neil, Perriot Benjamin, Poidevin Samuel, Pointet Stéphanie, Pot Valérie, Pradal Christophe, Richard C., Saint-Jean Sébastien, Salse Jérôme, Sinfort Carole, Smith J., Ter Halle Alexandra, Van Den Berg Eric, Walker Anne Sophie. 2015. . Versailles : Groupe Français des Pesticides, Résumé, 2 p. congrès annuel du Groupe Français des Pesticides : Devenir et impact des pesticides : verrous à lever et nouveaux enjeux, Versailles, France, 25 May 2015/27 May 2015.
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Dealing with plant phenotypic plasticity using FSPM: opportunities and challenges for plant breeding. The rice example. Luquet Delphine, Rebolledo Maria Camila, Dingkuhn Michaël, Clément-Vidal Anne, Pradal Christophe, Soulie Jean-Christophe. 2011. In : 1st French-Brazilian Meeting on Functional-Structural Plant Modeling (FSPM), October 24-27, 2011, Campinas, Brazil. s.l. : s.n., Diaporama, (21 vues) French-Brazilian FSPM Meeting. 1, Campinas, Brésil, 24 October 2011/27 October 2011.
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Intérêts des plateformes de modélisation pour améliorer l'application du modèle ecomeristem en appui au phénotypage et ideotypage. Luquet Delphine, Soulie Jean-Christophe, Pradal Christophe, Ramat Eric. 2011. In : Journées annuelles 2011 du Réseau IGEC (Interaction Génotype-Environnement-Conduite), 21-22 novembre 2011, Paris, France. s.l. : s.n., Diaporama, (8 vues) Journées annuelles 2011 du Réseau IGEC, Paris, France, 21 November 2011/22 November 2011.
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L-Py: L-Systems in Python : [Présentation #4458]. Boudon Frédéric, Pradal Christophe. 2011. In : EuroSciPy 2011, August 25-28, Paris. INRIA Saclay Ile-de-France. s.l. : s.n., 2 p. European Meeting on Python in Science. 4, Paris, France, 25 August 2001/28 August 2001.
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Building modular FSPM under OpenAlea : concepts and applications. Fournier Christian, Pradal Christophe, Louarn Gaëtan, Combes Didier, Soulie Jean-Christophe, Luquet Delphine, Boudon Frédéric, Chelle Michaël. 2010. In : Proceedings of the 6th International Workshop on Functional-Structural Plant Models, FSPM 2010, September 12-17, 2010, University of California, Davis (USA). Dejong Thedore M. (ed.), Da Silva David (ed.). University of California-Department of Plant Sciences. Davis : University of California, pp. 109-112. International Workshop on Functional-Structural Plant Models. 6, Davis, États-Unis, 12 September 2010/17 September 2010.
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Feedbacks between plant microclimate and morphogenesis in fluctuating environment : analysis for rice using Ecomeristem model coupled with 3D plant and energy balance computation tools in OpenAlea platform. Soulie Jean-Christophe, Pradal Christophe, Fournier Christian, Luquet Delphine. 2010. In : Proceedings of the 6th International Workshop on Functional-Structural Plant Models, FSPM 2010, September 12-17, 2010, University of California, Davis (USA). Dejong Thedore M. (ed.), Da Silva David (ed.). University of California-Department of Plant Sciences. Davis : University of California, pp. 138-140. International Workshop on Functional-Structural Plant Models. 6, Davis, États-Unis, 12 September 2010/17 September 2010.
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L-Py, an open L-systems framework in Python. Boudon Frédéric, Cokelaer Thomas, Pradal Christophe, Godin Christophe. 2010. In : Proceedings of the 6th International Workshop on Functional-Structural Plant Models, FSPM 2010, September 12-17, 2010, University of California, Davis (USA). Dejong Thedore M. (ed.), Da Silva David (ed.). University of California-Department of Plant Sciences. Davis : University of California, pp. 116-119. International Workshop on Functional-Structural Plant Models. 6, Davis, États-Unis, 12 September 2010/17 September 2010.
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Modeling strategies using visual programming in OpenAlea. Pradal Christophe, Cokelaer Thomas, Barbeau Daniel, Moscardi Eric, Chopard Jérôme, Godin Christophe. 2010. In : Proceedings of the 6th International Workshop on Functional-Structural Plant Models, FSPM 2010, September 12-17, 2010, University of California, Davis (USA). Dejong Thedore M. (ed.), Da Silva David (ed.). University of California-Department of Plant Sciences. Davis : University of California, pp. 113-115. International Workshop on Functional-Structural Plant Models. 6, Davis, États-Unis, 12 September 2010/17 September 2010.
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Modelling of the airborne dispersal of a pathogen over a structured vegetal cover. Mammeri Youcef, Burie Jean-Baptiste, Calonnec Agnès, Cokelaer Thomas, Costes Evelyne, Langlais Michel, Pradal Christophe. 2010. In : Proceedings of the 6th International Workshop on Functional-Structural Plant Models, FSPM 2010, September 12-17, 2010, University of California, Davis (USA). Dejong Thedore M. (ed.), Da Silva David (ed.). University of California-Department of Plant Sciences. Davis : University of California, pp. 55-57. International Workshop on Functional-Structural Plant Models. 6, Davis, États-Unis, 12 September 2010/17 September 2010.
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VisuAlea, towards a scientific modelling environment using visual programming. Pradal Christophe, Barbeau Daniel, Cokelaer Thomas, Moscardi Eric. 2010. In : Annual European Conference for Scientists Unsing Phyton EuroSciPy 2010, Paris, 8-11 July 2010. s.l. : s.n., Résumé, 1 p. Annual European Conference for Scientists Using Phython, Paris, France, 8 July 2010/11 August 2010.
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Compression progressive de modèles de plantes à base de cylindres généralisés. Mondet Sébastien, Boudon Frédéric, Hoelt J.C., Morin Géraldine, Grigoras Romulus, Pradal Christophe, Paulin M.. 2007. In : Journées de l'Association francophone d'informatique graphique. Association francophone d'informatique graphique. s.l. : s.n., pp. 197-204. Journées de l'Association francophone d'informatique graphique. 20, Marne-la-Vallée, France, 26 November 2007/28 November 2007.
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Modeling of light transmission under heterogeneous forest canopy : model description and validation. Da Silva David, Balandier Philippe, Boudon Frédéric, Marquier André, Pradal Christophe, Godin Christophe, Sinoquet Hervé. 2007. In : Proceedings : Abstracts of papers and posters of the 5th International Workshop on Functional Structural Plant Models, November 4-9, 2007, Napier, New Zealand. Eds by Prusinkiewicz P., Hanan J., Lane B. Napier : HortResearch, 58 (4 ) International Workshop on Functional-Structural Plant Models. 5, Napier, Nouvelle-Zélande, 4 November 2007/9 November 2007.
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OpenAlea: An open-source platform for the integration of heterogeneous FSPM components. Dufour-Kowalski Samuel, Pradal Christophe, Dones Nicolas, Barbier de Reuille Pierre, Boudon Frédéric, Chopard Jérôme, DaSilva D., Durand Jean-Baptiste, Ferraro Pascal, Fournier Christian, Guédon Yann, Ouangraoua A., Smith C., Stoma Szymon, Theveny Frédéric, Sinoquet Hervé, Godin C.. 2007. In : Proceedings : Abstracts of papers and posters of the 5th International Workshop on Functional Structural Plant Models, November 4-9, 2007, Napier, New Zealand. Eds by Prusinkiewicz P., Hanan J., Lane B. Napier : HortResearch, pp. 36-1. International Workshop on Functional-Structural Plant Models. 5, Napier, Nouvelle-Zélande, 4 November 2007/9 November 2007.
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The architecture of OpenAlea : A visual programming and component based software for plant modeling. Pradal Christophe, Dufour-Kowalski Samuel, Boudon Frédéric, Dones Nicolas. 2007. In : Proceedings : Abstracts of papers and posters of the 5th International Workshop on Functional Structural Plant Models, November 4-9, 2007, Napier, New Zealand. Eds by Prusinkiewicz P., Hanan J., Lane B. Napier : HortResearch, pp. 25-1. International Workshop on Functional-Structural Plant Models. 5, Napier, Nouvelle-Zélande, 4 November 2007/9 November 2007.
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OpenAlea : a platform for plant modelling analysis and simulation. Pradal Christophe, Boudon Frédéric, Dones Nicolas, Durand Jean-Baptiste, Barbier de Reuille Pierre, Fournier Christian, Sinoquet Hervé, Godin Christophe. 2006. In : Europhyton 2006, Genève, Suisse, 03-05 juillet 2006. s.l. : s.n., Diaporama, (27 vues) Europhyton 2006, Genève, Suisse, 3 July 2006/5 July 2006.

ALEA : Atelier logiciel libre pour la modélisation des plantes. Pradal Christophe, Godin Christophe. 2005. In : Causeries d'Intech' Sophia, 30-06-2005, Sophia-Antipolis, France. s.l. : s.n., Diaporama, (19 vues) Causeries d'Intech' Sophia, Sophia Antipolis, France, 30 June 2005.
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ALEA: A software for integrating analysis and simulation tools for 3D architecture and ecophysiology. Pradal Christophe, Dones Nicolas, Godin Christophe, Barbier de Reuille Pierre, Boudon Frédéric, Adam Boris, Sinoquet Hervé. 2004. In : Proceedings of the 4th International workshop on functional-structural plant models (FSPM), abstracts of papers and posters, 7-11 June 2004, Montpellier, France. Godin Christophe (ed.), Hanan Jim (ed.), Kurth Winfried (ed.), Lacointe André (ed.), Takenaka Akio (ed.), Prusinkiewicz Przemyslaw (ed.), Dejong Thedore M. (ed.), Beveridge Christine (ed.). CIRAD-AMIS-UMR AMAP. Montpellier : CIRAD-AMAP, p. 406. International Workshop on Functional-Structural Plant Models (FSPM). 4, Montpellier, France, 7 June 2004/11 June 2004.

Thesis

Architecture de Dataflow pour des systèmes modulaires et génériques de simulation de plante. Pradal Christophe. 2019. Montpellier : Université de Montpellier, 128 p. Thèse de doctorat : Informatique : Université de Montpellier
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Technical and research document

Platform Migrator. Technical Report TR2018-990. Contractor Munir, Pradal Christophe, Shasha Dennis. 2018. New-York : University of New-York, 43 p.
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PlantGL : a python-based geometric library for 3D plant modelling at different scales. Pradal Christophe, Boudon Frédéric, Nouguier Christophe, Chopard Jérôme, Godin Christophe. 2007. Le Chesnay : INRIA, 42 p. (Rapport de recherche : INRIA. Thème BIO, 6367)
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GEOM Module manual. I. user guide. Boudon Frédéric, Nouguier Christophe, Godin Christophe, Pradal Christophe. 2003. Montpellier : CIRAD, 74 p.
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Cours materials

IPython & Jupyter. Pradal Christophe. 2016. Montpellier : CIRAD-BIOS-UMR AGAP-INRIA, Diaporama, 1 diaporama (47 vues)
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Scientific workflows. Pradal Christophe. 2016. Saint-Jean-de-Luz : CIRAD-BIOS-UMR AGAP-INRIA, 1 diaporama (76 vues)
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This list was generated on Sun Nov 22 10:07:55 2020 CET.