Résultats pour : "écologie microbienne"

Benchmarking of virome metagenomic analysis approaches using a large, 60+ members, viral synthetic community. Schönegger Deborah, Moubset Oumaima, Margaria Paolo, Menzel Wulf, Winter Stephan, Roumagnac Philippe, Marais Armelle, Candresse Thierry. 2023. Journal of Virology, 97 (11), 20 p.

Biogeographical survey of soil microbiomes across sub-Saharan Africa: structure, drivers, and predicted climate-driven changes. Cowan D.A., Lebre P.H., Amon C.E.R., Becker R.W., Boga H.I., Boulangé Alain, Chiyaka T.L., Coetzee T., De Jager P.C., Dikinya O., Eckardt F., Greve M., Harris M.A., Hopkins D.W., Houngnandan H.B., Houngnandan P., Jordaan K., Kaimoyo E., Kambura A.K., Kamgan-Nkuekam G., Makhalanyane T.P., Maggs-Kölling G., Marais E., Mondlane H., Nghalipo E., Olivier B.W., Ortiz M., Pertierra L.R., Ramond J.B., Seely M., Sithole-Niang I., Valverde A., Varliero G., Vikram S., Wall Diana H., Zeze A.. 2022. Microbiome, 10:131, 22 p.

Effects of ultramafic topsoil stockpiling during mine activities on its microbial diversity and other microbiological and physicochemical characteristics. Amir Hamid, Bordez Laurent, Cavaloc Yvon, Jourand Philippe, Ducousso Marc, Juillot Farid. 2022. Ecological Engineering, 177:106563, 11 p.

Soil enzymes in response to climate warming: Mechanisms and feedbacks. Fanin Nicolas, Mooshammer Maria, Sauvadet Marie, Meng Cheng, Alvarez Gaël, Bernard Laetitia, Bertrand Isabelle, Blagodatskaya Evgenia, Bon Lucie, Fontaine Sébastien, Niu Shuli, Lashermes Gwenaëlle, Maxwell Tania L., Weintraub Michael, Wingate Lisa, Moorhead Daryl, Nottingham Andrew. 2022. Functional Ecology, 36 (6), n.spéc. Emerging relationships among microbes, soil carbon storage and climate change : 1378-1395.

The mosquito microbiome includes habitat-specific but rare symbionts. Schrieke Hans, Maignien Loïs, Constancias Florentin, Trigodet Florian, Chakloute Sarah, Rakotoarivony Ignace, Marie Albane, L'Ambert Grégory, Makoundou Patrick, Pagès Nonito, Eren A. Murat, Weill Mylène, Sicard Mathieu, Reveillaud Julie. 2022. Computational and Structural Biotechnology Journal, 20 : 410-420.

Assessing soil microbial biodiversity as affected by grazing and woody vegetation cover in a temperate savannah. El Mujtar Verónica, Gregorutti Viviana C., Eclesia Roxana P., Wingeyer Ana, Lezana Lucrecia, Canavelli Sonia B., Tittonell Pablo. 2021. Annals of Applied Biology, 179 (2) : 231-245.

Identifying potential hosts of short-branch microsporidia. Doliwa Annemie, Dunthorn Micah, Rassoshanska Erika, Mahé Frédéric, Bass David, Duarte Ritter Camila. 2021. Microbial Ecology, 82 : 549-553.

Periodontitis associates with species-specific gene expression of the oral microbiota. Belstrom Daniel, Constancias Florentin, Drautz-Moses Daniela I., Schuster Stephan C., Veleba Mark, Mahé Frédéric, Givskov Michael. 2021. npj Biofilms and Microbiomes, 7:76, 10 p.

Changes in soil organic matter and microbial communities after fine and coarse residues inputs from Mediterranean tree species. Brunel Caroline, Gros Raphael, Lerch Thomas Z., Farnet Da Silva Anne Marie. 2020. Applied Soil Ecology, 149:103516, 10 p.

Controlled sampling of ribosomally active protistan diversity in sediment-surface layers identifies putative players in the marine carbon sink. Rodríguez-Martínez Raquel, Leonard Guy, Milner David S., Sudek Sebastian, Conway Mike, Moore Karen, Hudson Theresa, Mahé Frédéric, Keeling Patrick J., Santoro Alyson E., Worden Alexandra Z., Richards Thomas A.. 2020. ISME Journal, 14 (4) : 984-998.

Diversity and dynamics of relevant nanoplanktonic diatoms in the Western English Channel. Arsenieff Laure, Le Gall Florence, Rigaut-Jalabert Fabienne, Mahé Frédéric, Sarno Diana, Gouhier Léna, Baudoux Anne-Claire, Simon Nathalie. 2020. ISME Journal, 14 (8) : 1966-1981.

Environmental drivers of microbial functioning in Mediterranean forest soils. Brunel Caroline, Farnet Da Silva Anne Marie, Gros Raphael. 2020. Microbial Ecology, 80 : 669-681.

Evolutionary trajectories in plant-associated Pseudomonas and Xanthomonas strains. Scortichini Marco (ed.), Arnold Dawn (ed.), Pruvost Olivier (ed.), Jacques Marie Agnès (ed.), Bernal Adriana Jimena (ed.). 2020. Lausanne : Frontiers Media, 172 p. (Frontiers Research Topics) ISBN 978-2-88963-700-3

Heterogeneity of the rice microbial community of the Chinese centuries-old Honghe Hani rice terraces system. Alonso Pascal, Blondin Laurence, Gladieux Pierre, Mahé Frédéric, Sanguin Hervé, Ferdinand Romain, Filloux Denis, Desmarais Eric, Cerqueira Frédérique, Jin Baihui, Huang Huichuan, He Xiahong, Morel Jean-Benoit, Martin Darren Patrick, Roumagnac Philippe, Vernière Christian. 2020. Environmental Microbiology, 22 (8) : 3429-3445.

Influence de l'hôte et de phytovirus sur l'assemblage du microbiote du riz à l'échelle de deux agrosystèmes. Alonso Pascal. 2020. Montpellier : Montpellier SupAgro, 218 p. Thèse de doctorat : Microbiologie. Bio-informatique : Montpellier SupAgro

Microbial symbionts and nutrient (N and P) sharing: Effect on soil microbial activity in the upland rice (Oriza sativa) and bean (Phaseolus vulgaris) intercropping. Razakatiana Adamson Tsoushima Ernest, Becquer Thierry, Randriambanona Herizo, Baohanta Rondro Harinisainana, Andrianandrasana Martial Doret, Le Roux Christine, Duponnois Robin, Ramanankierana Heriniaina. 2020. Scientific Papers. Series A. Agronomy, 63 (1) : 490-499.

Nipah virus circulation at human–bat interfaces, Cambodia. Cappelle Julien, Hoem Thavry, Hul Vibol, Furey Neil M., Nguon Kunthy, Prigent Steven, Dupon Liane, Ken Sreymom, Neung Chhoeuth, Hok Visal, Pring Long, Lim Thona, Bumrungsri Sara, Duboz Raphaël, Buchy Philippe, Ly Sowath, Duong Veasna, Tarantola Arnaud, Binot Aurélie, Dussart Philippe. 2020. Bulletin of the World Health Organization, 98 (8) : 539-547.

Salinity-induced changes in the rhizosphere microbiome improve salt tolerance of Hibiscus hamabo. Yuan Yongge, Brunel Caroline, van Kleunen Mark, Li Jummin, Jin Zexin. 2019. Plant and Soil, 443 : 525-537.

Trait-based life-history strategies explain succession scenario for complex bacterial communities under varying disturbance. Santillan Ezequiel, Seshan Hari, Constancias Florentin, Wuertz Stefan. 2019. Environmental Microbiology, 21 (10) : 3751-3764.

A new prevalent densovirus discovered in Acari. Insight from metagenomics in viral communities associated with two-spotted mite (Tetranychus urticae) populations. François Sarah, Mutuel Doriane, Duncan Alison B., Rodrigues Leonor R., Danzelle Celya, Lefevre Sophie, Santos Inês, Frayssinet Marie, Fernandez Emmanuel, Filloux Denis, Roumagnac Philippe, Froissart Rémy, Ogliastro Mylène. 2019. Viruses, 11 (3):233, 24 p.

Microbial island biogeography: Isolation shapes the life history characteristics but not diversity of root-symbiotic fungal communities. Davison John, Moora Mari, Öpik Maarja, Ainsaar Leho, Ducousso Marc, Hiiesalu Inga, Jairus Teele, Johnson Nancy, Jourand Philippe, Kalamees Rein, Koorem Kadri, Meyer Jean-Yves, Püssa Kersti, Reier Ülle, Pärtel Meelis, Semchenko Marina, Traveset Anna, Vasar Martti, Zobel Martin. 2018. ISME Journal, 12 (9) : 2211-2224.

Challenging the conceptual framework of maintenance hosts for influenza A viruses in wild birds. Caron Alexandre, Cappelle Julien, Gaidet Nicolas. 2017. Journal of Applied Ecology, 54 (3) : 681-690.

Day-to-day dynamics of commensal Escherichia coli in Zimbabwean cows evidence temporal fluctuations within a host-specific population structure. Massot Méril, Couffignal Camille, Clermont Olivier, D'Humières Camille, Chatel Jérémie, Plault Nicolas, Andremont Antoine, Caron Alexandre, Mentré France, Denamur Erick. 2017. Applied and Environmental Microbiology, 83 (13):e00659, 17 p.

Functional genes of microorganisms, comprehending the dynamics of agricultural ecosystems. Reali Catiusca, Pilz Júnior Harry Luiz, Meile Jean-Christophe, Shorr Galindo Sabine, Fiuza Lidia Mariana. 2017. Brazilian Archives of Biology and Technology, 60:e17160370, 18 p.

Fungal adaptation to contemporary fungicide applications: the case of Botrytis cinerea populations from Champagne vineyards (France). Walker Anne Sophie, Ravigné Virginie, Rieux Adrien, Ali S., Carpentier F., Fournier Elisabeth. 2017. Molecular Ecology, 26 (7), n.spéc. Microbial local adaption : 1919-1935.

Application of PCR-DGGE to the study of dynamics and biodiversity of microbial contaminants during the processing of Hibiscus sabdariffa drinks and concentrates. Ndiaye Ndeye Adiara, Hamdouche Yasmine, Kane Ale, Cisse Mady, Berthiot Laurent, Touré-Kané N. Coumba, Montet Didier. 2016. Fruits, 71 (3) : 141-149.

Applications of metagenomics to fermented foods. Bigot Céline, Meile Jean-Christophe, Remize Fabienne, Strub Caroline. 2016. In : Fermented foods. Part I: biochemistry and biotechnology. Montet Didier (ed.), Ray Ramesh C. (ed.). Boca Raton : CRC Press, 333-346. (Food Biology Series) ISBN 978-1-4987-4079-1

Biological control of cacao diseases. Ten Hoopen Gerben Martijn, Krauss Ulrike. 2016. In : Cacao diseases: a history of old enemies and new encounters. Bailey Bryan A. (ed.), Meinhardt Lyndel W. (ed.). Cham : Springer International Publishing, 511-566. ISBN 978-3-319-24787-8

Discrimination of post-harvest coffee processing methods by microbial ecology analyses. Hamdouche Yasmine, Meile Jean-Christophe, Nganou Donkeng Nadège, Durand Noel, Teyssier Corinne, Montet Didier. 2016. Food Control, 65 : 112-120.

Distribution patterns of microbial communities in ultramafic landscape: A metagenetic approach highlights the strong relationships between diversity and environmental traits. Bordez Laurent, Jourand Philippe, Ducousso Marc, Carriconde Fabian, Cavaloc Yvon, Santini Sébastien, Claverie Jean-Michel, Wantiez L., Leveau Antoine, Amir Hamid. 2016. Molecular Ecology, 25 (10) : 2258-2272.

Diverse circular replication-associated protein encoding viruses circulating in invertebrates within a lake ecosystem. Dayaram Anisha, Galatowitsch Mark L., Argüello-Astorga Gerardo, van Bysterveldt Katherine, Kraberger Simona, Stainton Daisy, Harding Jon S., Roumagnac Philippe, Martin Darren Patrick, Lefeuvre Pierre, Varsani Arvind. 2016. Infection, Genetics and Evolution, 39 : 304-316.

Dynamics of bacterial community composition in the malaria mosquito's epithelia. Tchioffo Majoline T., Boissiere Anne, Abate Luc, Nsango Sandrine E., Bayibéki Albert N., Awono-Ambéné Parfait, Christen Richard, Gimonneau Geoffrey, Morlais Isabelle. 2016. Frontiers in Microbiology, 6 (1500), 9 p.

Escherichia coli population structure and antibiotic resistance at a buffalo/cattle interface in Southern Africa. Mercat Mathilde, Clermont Olivier, Massot Méril, Ruppe Etienne, De Garine-Wichatitsky Michel, Miguel Eve, Valls Fox Hugo, Cornélis Daniel, Andremont Antoine, Denamur Erick, Caron Alexandre. 2016. Applied and Environmental Microbiology, 82 (5) : 1459-1467.

Impact of wheat/faba bean mixed cropping or rotation systems on soil microbial functionalities. Wahbi Sanâa, Prin Yves, Thioulouse Jean, Sanguin Hervé, Baudoin Ezékiel, Maghraoui Tasnime, Oufdou Khalid, Le Roux Christine, Galiana Antoine, Hafidi Mohamed, Duponnois Robin. 2016. Frontiers in Plant Science, 7 (1364), 9 p.

Surface polysaccharides and quorum sensing are involved in the attachment and survival of Xanthomonas albilineans on sugarcane leaves. Mensi Imène, Daugrois Jean-Heinrich, Pieretti Isabelle, Gargani Daniel, Fleites Laura, Noëll Julie, Bonnot François, Gabriel Dean W., Rott Philippe. 2016. Molecular Plant Pathology, 17 (2) : 236-246.

Using ecology, physiology, and genomics to understand host specificity in Xanthomonas. Jacques Marie Agnès, Arlat Mathieu, Boulanger Alice, Boureau Tristan, Carrère Sébastien, Cesbron Sophie, Chen Nicolas W.G., Cociancich Stéphane, Darrasse Armelle, Denancé Nicolas, Fischer-Le-Caux Marion, Gagnevin Lionel, Koebnik Ralf, Lauber Emmanuelle, Noel Laurent D., Pieretti Isabelle, Portier Perrine, Pruvost Olivier, Rieux Adrien, Robène Isabelle, Royer Monique, Szurek Boris, Verdier Valérie, Vernière Christian. 2016. Annual Review of Phytopathology, 54 : 163-187.

Biodiversity study of the yeast in fresh and fermented camel and mare's milk by denaturing gradient gel electrophoresis. Baubekova Almagul, Akhmetsadykova Shynar, Konuspayeva Gaukhar, Akhmetsadykov Nourlan, Faye Bernard, Loiseau Gérard. 2015. Journal of Camel Practice and Research, 22 (1) : 91-95.

Discriminating organic and conventional foods by analysis of their microbial ecology: An application on fruits. Bigot Céline, Meile Jean-Christophe, Kapitan Gnimdu André, Montet Didier. 2015. Food Control, 48 : 123-129.

Discrimination des procédés de transformation post-récolte du cacao et du café par analyse globale de l'écologie microbienne. Hamdouche Yasmine. 2015. Montpellier : Montpellier SupAgro, 292 p. Thèse de doctorat : Biotechnologie, Microbiologie : Montpellier SupAgro Centre international d'études supérieures en sciences agronomiques

Dynamics of microbial ecology during cocoa fermentation and drying: Towards the identification of molecular markers. Hamdouche Yasmine, Guehi Tagro Simplice, Durand Noël, Kedjebo Kra Brou Didier, Montet Didier, Meile Jean-Christophe. 2015. Food Control, 48 : 117-122.

Microbial ecology of arsenic-mobilizing Cambodian sediments: Lithological controls uncovered by stable-isotope probing. Héry Marina, Rizoulis Athanasios, Sanguin Hervé, Cooke David A., Pancost Richard D., Polya David A., Lloyd Jonathan R.. 2015. Environmental Microbiology, 17 (6) : 1857-1869.

Multiple introductions and admixture at the origin of the continental spread of the fungal banana pathogen Mycosphaerella fijiensis in Central America: a statistical test using approximate bayesian computation. Robert Stéphanie, Zapater Marie-Françoise, Carlier Jean, Abadie Catherine, Ravigné Virginie. 2015. Revue d'Ecologie, 70, suppl. n°12 "Invasions biologiques" : 127-138.

Differing courses of genetic evolution of Bradyrhizobium inoculants as revealed by long-term molecular tracing in Acacia mangium plantations. Perrineau Marie-Mathilde, Le Roux Christine, Galiana Antoine, Faye Aliou, Duponnois Robin, Goh Doreen Kim Soh, Prin Yves, Béna Gilles. 2014. Applied and Environmental Microbiology, 80 (18) : 5709-5716.

Ecologie, diversité, et découverte de phytovirus à l'échelle de deux agro-écosystèmes dans un cadre spatio-temporel à l'aide de la géo-métagénomique. Bernardo Pauline. 2014. Montpellier : UM2, 278 p. Thèse de doctorat : Microbiologie parasitologie : Université Montpellier 2

Coexisting with wildlife in transfrontier conservation areas in Zimbabwe: Cattle owners' awareness of disease risks and perceptions of the role played by wildlife. De Garine-Wichatitsky Michel, Miguel Eve, Mukamuri Billy B., Garine Eric, Wencelius Jean, Pfukenyi Davies Mubika, Caron Alexandre. 2013. Comparative Immunology, Microbiology and Infectious Diseases, 36 (3), spec. : 321-332.

Constraints on genome dynamics revealed from gene distribution among the Ralstonia solanacearum species. Lefeuvre Pierre, Cellier Gilles, Remenant Benoit, Chiroleu Frédéric, Prior Philippe. 2013. PloS One, 8 (5):e63155, 11 p.

Determination of speciality food salt origin by using 16S rDNA fingerprinting of bacterial communities by PCReDGGE: An application on marine salts produced in solar salterns from the French Atlantic Ocean. Dufossé Laurent, Donadio Clara, Valla Alain, Meile Jean-Christophe, Montet Didier. 2013. Food Control, 32 (2) : 644-649.

Métagénomique virale et pathologie Une histoire récente. Bernardo Pauline, Albina Emmanuel, Eloit Marc, Roumagnac Philippe. 2013. MS - Médecine Sciences, 29 (5) : 501-508.

Determination of coffee origin by using 28S rDNA fingerprinting of fungal communities by PCR-DGGE: Application to the Cameroonian coffee. Nganou Donkeng Nadège, Durand Noël, Tatsadjieu Ngoune Léopold, Meile Jean-Christophe, El Sheikha Aly, Montet Didier, Mbufung C.M.. 2012. International Journal of Biosciences, 2 (5) : 18-30.

Dynamique des populations microbiennes au cours du traitement post récolte du café et relations interspécifiques entre souches ochratoxinogènes. Durand Noël. 2012. Montpellier : UM2, 240 p. Thèse de doctorat : Sciences des procédés Sciences des aliments. Biotechnologie, microbiologie : Université Montpellier 2

Influence of technological treatments on bacterial communities in tilapia (Oreochromis niloticus) as determined by 16S rDNA fingerprinting using polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE). Maïworé Justine, Tatsadjieu Ngoune Léopold, Goli Thierry, Montet Didier, Mbofung C.M.F.. 2012. African Journal of Biotechnology, 11 (34) : 8586-8593.

Multivariate analyses in soil microbial ecology: A new paradigm. Thioulouse Jean, Prin Yves, Duponnois Robin. 2012. Environmental and Ecological Statistics, 19 (4) : 499-520.

Parasite community ecology and epidemiological interactions at the wildlife/domestic/human interface : can we anticipate emerging infectious diseases in their hotspots? Caron Alexandre, De Garine-Wichatitsky Michel, Morand Serge. 2011. Ecohealth, 7, suppl., Résumé, S24 International One Health Congress. 1, Victoria, Australie, 14 Février 2011/16 Février 2011.

Epidémiologie spatiale : les maladies vues du ciel. Tran Annelise, Guis Hélène, Guernier Vanina, Gerbier Guillaume. 2009. In : Introduction à l'épidémiologie intégrative des maladies infectieuses et parasitaires. Guégan Jean-François, Choisy Marc. Paris : De Boeck Université, 41-80. (LMD) ISBN 978-2-8041-5948-1

Biologie et épidémiologie de l'agent de la maladie des taches noires de la mangue. Pruvost Olivier, Couteau Annie, Luisetti Jacques, Vernière Christian. 1995. Fruits, 50 (3) : 183-189.

Détection de Xanthomonas campestris pv. citri, agent du chancre bactérien des agrumes, par NESTED-PCR : Optimisation de la technique et mise au point d'un protocole quantitatif, application dans le cadre d'une étude d'écologie microbienne. Villemot Isabelle. 1994. Lille : Université de sciences et technologies de Lille, 116 p. Mémoire DESS : Génie Cellulaire et Moléculaire : Université des sciences et techniques du Languedoc

Inoculation des légumineuses en milieu tropical : recherche, développement et aspects économiques. Saint Macary Hervé, Beunard Pierre, Scaglia J.A.. 1992. In : Biological nitrogen fixation and sustainability of tropical agriculture : Proceedings of the Fourth International Conference of the AABNF, Ibadan, Nigeria, 24-28 September 1990. Mulongoy K. (ed.), Gueye M. (ed.), Spencer Dunstan S. C. (ed.). AABNF. New York : John Wiley, 343-350. ISBN 0-47-193560-3 International Conference of the African Association for Biological Nitrogen Fixation. 4, Ibadan, Nigeria, 24 Septembre 1990/28 Septembre 1990.

Compte-rendu de mission à l'Université Claude Bernard - Lyon I. Laboratoire d'écologie microbienne du 5 au 6 février 1990. Saint Macary Hervé. 1990. Montpellier : CIRAD-IRAT, 6 p.