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Number of items: 166.

Journal article

V-Mango: A functional–structural model of mango tree growth, development and fruit production. Boudon Frédéric, Persello Séverine, Jestin Alexandra, Briand Anne-Sarah, Grechi Isabelle, Fernique Pierre, Guédon Yann, Lechaudel Mathieu, Lauri Pierre-Eric, Normand Frédéric. 2020. Annals of Botany, 126 (4), n.spéc. Functional-Structural Plant Growth Modelling : pp. 745-763.
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Identifying phenological phases in strawberry using multiple change-point models. Labadie Marc, Denoyes Béatrice, Guédon Yann. 2019. Journal of Experimental Botany, 70 (20) : pp. 5687-5701.
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Lateral roots: Random diversity in adversity. Muller Bertrand, Guédon Yann, Passot Sixtine, Lobet Guillaume, Nacry Philippe, Pagès Loïc, Wissuwa Mathieu, Draye Xavier. 2019. Trends in Plant Science, 24 (9) : pp. 810-825.
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Long proleptic and sylleptic shoots in peach (Prunus persica L. Batsch) trees have similar, predetermined, maximum numbers of nodes and bud fate patterns. Prats-Llinàs Maria Teresa, López Gerardo, Fyhrie Katherine, Pallas Benoît, Guédon Yann, Costes Evelyne, Dejong Thedore M.. 2019. Annals of Botany, 123 (6) : pp. 933-1004.
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Are compound leaves more complex than simple ones? A multi-scale analysis. Koch Garance, Rolland Gaëlle, Dauzat Myriam, Bédiée Alexis, Baldazzi Valentina, Bertin Nadia, Guédon Yann, Granier Christine. 2018. Annals of Botany, 122 (7) : pp. 1173-1185.
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A new phenotyping pipeline reveals three types of lateral roots and a random branching pattern in two cereals. Passot Sixtine, Moreno-Ortega Beatriz, Moukouanga Daniel, Balsera Crispulo, Guyomarc'h Soazig, Lucas Mikaël, Lobet Guillaume, Laplaze Laurent, Muller Bertrand, Guédon Yann. 2018. Plant Physiology, 177 : pp. 896-910.
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Identifying developmental zones in maize lateral root cell length profiles using multiple change-point models. Moreno-Ortega Beatriz, Fort Guillaume, Muller Bertrand Lionel, Guédon Yann. 2017. Frontiers in Plant Science, 8:1750, 19 p.
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Integrative models for joint analysis of shoot growth and branching patterns. Peyhardi Jean, Caraglio Yves, Costes Evelyne, Lauri Pierre-Eric, Trottier Catherine, Guédon Yann. 2017. New Phytologist, 126 (4) : pp. 1291-1304.
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Characterization of pearl millet root architecture and anatomy reveals three types of lateral roots. Passot Sixtine, Gnacko Fatoumata, Moukouanga Daniel, Lucas Mikaël, Guyomarc'h Soazig, Ortega Beatriz Moreno, Atkinson Jonathan, Belko Marème N., Bennett Malcolm J., Gantet Pascal, Wells Darren, Guédon Yann, Vigouroux Yves, Verdeil Jean-Luc, Muller Bertrand, Laplaze Laurent. 2016. Frontiers in Plant Science, 7 (829), 11 p.
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Identification of successive flowering phases highlights a new genetic control of the flowering pattern in strawberry. Perrotte Justine, Guédon Yann, Gaston Amèlia, Denoyes Béatrice. 2016. Journal of Experimental Botany, 67 (19) : pp. 5643-5655.
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Identifying developmental phases in the Arabidopsis thaliana rosette using integrative segmentation models. Lievre Maryline, Granier Christine, Guédon Yann. 2016. New Phytologist, 210 (4) : pp. 1466-1478.
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Modelling the influence of dimerisation sequence dissimilarities on the auxin signalling network. Legrand Jonathan, Léger Jean-Benoist, Robin Stéphane, Vernoux Teva, Guédon Yann. 2016. BMC Systems Biology, 10 (22), 17 p.
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Partitioned conditional generalized linear models for categorical responses. Peyhardi Jean, Trottier Catherine, Guédon Yann. 2016. Statistical Modelling, 16 (4) : pp. 297-321.
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Analysing growth and development of plants jointly using developmental growth stages. Dambreville Anaëlle, Lauri Pierre-Eric, Normand Frédéric, Guédon Yann. 2015. Annals of Botany, 115 (1) : pp. 93-105.
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Differentiated responses of apple tree floral phenology to global warming in contrasting climatic regions. Legave Jean Michel, Guédon Yann, Malagi Gustavo, El Yaacoubi Adnane, Bonhomme Marc. 2015. Frontiers in Plant Science, 6 (1054), 13 p.
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How different pruning severities alter shoot structure: A modelling approach in young 'Nonpareil' almond trees. Negron Claudia, Contador Loreto, Lampinen Bruce D., Metcalf Samuel G., Guédon Yann, Costes Evelyne, Dejong Thedore M.. 2015. Functional Plant Biology, 42 (3) : pp. 325-335.
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Segmentation uncertainty in multiple change-point models. Guédon Yann. 2015. Statistics and Computing, 25 (2) : pp. 303-320.
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A new specification of generalized linear models for categorical responses. Peyhardi Jean, Trottier Catherine, Guédon Yann. 2015. Biometrika, 102 (4) : pp. 889-906.
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Applications of hidden hybrid Markov/semi-Markov models: from stopover duration to breeding success dynamics. Choquet Rémi, Béchet Arnaud, Guédon Yann. 2014. Ecology and Evolution, 4 (6) : pp. 817-826.
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Cytokinin signalling inhibitory fields provide robustness to phyllotaxis. Besnard Fabrice, Refahi Yassin, Morin Valérie, Marteaux Benjamin, Brunoud Géraldine, Chambrier Pierre, Rozier Frédérique, Mirabet Vincent, Legrand Jonathan, Lainé Stéphanie, Thévenon Emmanuel, Farcot Etienne, Cellier Coralie, Das Pradeep, Bishopp Anthony, Dumas Renaud, Parcy François, Helariutta Ykä, Boudaoud Arezki, Godin Christophe, Traas Jan, Guédon Yann, Vernoux Teva. 2014. Nature, 505n.7483 : pp. 417-421.
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Differences in proleptic and epicormic shoot structures in relation to water deficit and growth rate in almond trees (Prunus dulcis). Negron Claudia, Contador Loreto, Lampinen Bruce D., Metcalf Samuel G., Guédon Yann, Costes Evelyne, Dejong Thedore M.. 2014. Annals of Botany, 113 (3) : pp. 545-554.
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Exploring bud dormancy completion with a combined architectural and phenological analysis: The case of apple trees in contrasting winter temperature conditions. Dutra Schmitz Juliano, Guédon Yann, Herter Flavio Gilberto, Berenhauser Leite Gabriel, Lauri Pierre-Eric. 2014. American Journal of Botany, 101 (3) : pp. 398-407.
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Deciphering structural and temporal interplays during the architectural development of mango trees. Dambreville Anaëlle, Lauri Pierre-Eric, Trottier Catherine, Guédon Yann, Normand Frédéric. 2013. Journal of Experimental Botany, 64 (8) : pp. 2467-2480.
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Estimating stop over duration in the presence of trap-effects. Choquet Rémi, Guédon Yann, Besnard Aurélien, Guillermain M., Pradel Roger. 2013. Ecological Modelling, 250 : pp. 111-118.
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New insights for estimating the genetic value of segregating apple progenies for irregular bearing during the first years of tree production. Durand Jean-Baptiste, Guitton Baptiste, Peyhardi Jean, Holtz Yan, Guédon Yann, Trottier Catherine, Costes Evelyne. 2013. Journal of Experimental Botany, 64 (16) : pp. 5099-5113.
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Pattern identification and characterization reveal permutations of organs as a key genetically controlled property of post-meristematic phyllotaxis. Guédon Yann, Refahi Yassin, Besnard Fabrice, Farcot Etienne, Godin Christophe, Vernoux Teva. 2013. Journal of Theoretical Biology, 338 : pp. 94-110.
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Systematic analysis of branching patterns of three almond cultivars with different tree architectures. Negron Claudia, Contador Loreto, Lampinen Bruce D., Metcalf Samuel G., Dejong Thedore M., Guédon Yann, Costes Evelyne. 2013. Journal of the American Society for Horticultural Science, 138 (6) : pp. 407-415.
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Deciphering the ontogeny of a sympodial tree. Costes Evelyne, Guédon Yann. 2012. Trees, 26 (3) : pp. 865-879.
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Deciphering the developmental plasticity of walnut saplings in relation to climatic factors and light environment. Taugourdeau Olivier, Chaubert-Pereira Florence, Sabatier Sylvie-Annabel, Guédon Yann. 2011. Journal of Experimental Botany, 62 (15) : pp. 5283-5296.
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How young trees cope with removal of whole or parts of shoots: an analysis of local and distant responses to pruning in 1-year-old apple (Malus X domestica; Rosaceae) trees. Fumey Damien, Lauri Pierre-Eric, Guédon Yann, Godin Christophe, Costes Evelyne. 2011. American Journal of Botany, 98 (11) : pp. 1737-1751.
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The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Vernoux Teva, Brunoud Géraldine, Farcot Etienne, Morin Valérie, Van Den Daele Hilde, Legrand Jonathan, Oliva Marina, Das Pradeep, Larrieu Antoine, Wells Darren, Guédon Yann, Armitage Lynne, Picard Franck, Guyomarc'h Soizic, Cellier Coralie, Parry Geraint, Koumproglou Rachil, Doonan John H., Estelle Mark, Godin Christophe, Kepinski Stefan, Bennett Malcolm J., De Veylder Lieven, Traas Jan. 2011. Molecular Systems Biology (7):508, 15 p.
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Markov and semi-markov switching linear mixed models used to identify forest Tree growth components. Chaubert-Pereira Florence, Guédon Yann, Lavergne Christian, Trottier Catherine. 2010. Biometrics, 66 (3) : pp. 753-762.
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Phase change-related variations of dome shape in Eucalyptus urophylla X Eucalyptus grandis shoot apical meristems. Mankessi François, Saya Aubin Rachel, Boudon Frédéric, Guédon Yann, Montes Fabienne, Lartaud Marc, Verdeil Jean-Luc, Monteuuis Olivier. 2010. Trees, 24 (4) : pp. 743-752.
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Identifying ontogenetic, environmental and individual components of forest tree growth. Chaubert-Pereira Florence, Caraglio Yves, Lavergne Christian, Guédon Yann. 2009. Annals of Botany, 104 (5) : pp. 883-896.
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MAppleT : simulation of apple tree development using mixed stochastic and biomechanical models. Costes Evelyne, Smith Colin, Renton Michael, Guédon Yann, Prusinkiewicz Przemyslaw, Godin Christophe. 2008. Functional Plant Biology, 35 (10) : pp. 936-950. International Workshop on Functional-Structural Plant Models. 5, Napier, Nouvelle-Zélande, 4 November 2007/9 November 2007.
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An auxin transport-based model of root branching in Arabidopsis thaliana. Lucas Mikaël, Guédon Yann, Jay Allemand Christian, Godin Christophe, Laplaze Laurent. 2008. PloS One, 3 (11):e3673, 13 p.
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Analyzing growth components in trees. Guédon Yann, Caraglio Yves, Heuret Patrick, Lebarbier Emilie, Meredieu Céline. 2007. Journal of Theoretical Biology, 248 : pp. 418-447.
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Exploring the state sequence space for hidden Markov and semi-Markov chains. Guédon Yann. 2007. Computational Statistics and Data Analysis, 51 : pp. 2379-2409.
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Predicting the vertical location of branches along Atlas cedar stem (Cedrus atlantica Manetti) in relation to annual shoot length. Courbet François, Sabatier Sylvie-Annabel, Guédon Yann. 2007. Annals of Forest Science, 64 (7) : pp. 707-718.
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Quantitative analysis of the phenotypic variability of shoot architecture in two grapevine (Vitis vinifera) cultivars. Louarn Gaëtan, Guédon Yann, Lecoeur Jérémie, Lebon Eric. 2007. Annals of Botany, 99 : pp. 425-437.
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Analysing grouping of nucleotides in DNA sequences using lumped processes constructed from markov chains. Guédon Yann, D'Aubenton-Carafa Yves, Thermes Claude. 2006. Journal of Mathematical Biology, 52 (3) : pp. 343-372.
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Co-ordinated growth between aerial and root systems in young apple plants issued from In vitro culture. Costes Evelyne, Garcia-Villanueva E., Jourdan Christophe, Regnard Jean-Luc, Guédon Yann. 2006. Annals of Botany, 97 (1) : pp. 85-96.
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Relative extents of preformation and neoformation in tree shoots : Analysis by a deconvolution method. Guédon Yann, Puntieri Javier G., Sabatier Sylvie-Annabel, Barthélémy Daniel. 2006. Annals of Botany, 98 (4) : pp. 835-844.
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Similarities and gradients in growth unit branching patterns during ontogeny in Fuji apple trees : a stochastic approach. Renton Michael, Guédon Yann, Godin Christophe, Costes Evelyne. 2006. Journal of Experimental Botany, 57 (12) : pp. 3131-3143.
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Analysis of the plant architecture via tree-structured statistical models : The hidden markov tree models. Durand Jean-Baptiste, Guédon Yann, Caraglio Yves, Costes Evelyne. 2005. New Phytologist, 166 (3) : pp. 813-825.
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Hidden hybrid markov/semi-markov chains. Guédon Yann. 2005. Computational Statistics and Data Analysis, 49 (3) : pp. 663-688.
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Computational methods for hidden markov tree models : An application to wavelet trees. Durand Jean-Baptiste, Goncalves Paulo, Guédon Yann. 2004. IEEE Transactions on Signal Processing, 52 (9) : pp. 2551-2560.

Analysing branching pattern in plantations of young red oak trees (Quercus rubra L., Fagaceae). Heuret Patrick, Guédon Yann, Guérard Natacha, Barthélémy Daniel. 2003. Annals of Botany, 91 (4) : pp. 479-492.

Comparison methods for branching and axillary flowering sequences. Guédon Yann, Heuret Patrick, Costes Evelyne. 2003. Journal of Theoretical Biology, 225 : pp. 301-325.

Estimating hidden semi-markov chains from discrete sequences. Guédon Yann. 2003. Journal of Computational and Graphical Statistics, 12 (3) : pp. 604-639.

Modelling diameter class distribution with a second-order matrix model. Picard Nicolas, Bar-Hen Avner, Guédon Yann. 2003. Forest Ecology and Management, 180 (1-3) : pp. 389-400.

Modelling branching patterns on 1-year-old trunks of six apple cultivars. Costes Evelyne, Guédon Yann. 2002. Annals of Botany, 89 (5) : pp. 513-524.

Synchronization of growth, branching and flowering processes in the South American tropical tree Cecropia obtusa (Cecropiaceae). Heuret Patrick, Barthélémy Daniel, Guédon Yann, Coulmier Xavier, Tancre Juliette. 2002. American Journal of Botany, 89 (7) : pp. 1180-1187.

Pattern analysis in branching and axillary flowering sequences. Guédon Yann, Barthélémy Daniel, Caraglio Yves, Costes Evelyne. 2001. Journal of Theoretical Biology, 212 : pp. 481-520.

Analyse et modélisation de la répartition des rameaux axillaires et des floraisons chez les arbres fruitiers. Costes Evelyne, Guédon Yann, Fournier D.. 1999. Fruits, 54 (6) : pp. 431-440.

Modelling the Sylleptic branching on one-year-old trunks of apple cultivars. Costes Evelyne, Guédon Yann. 1997. Journal of the American Society for Horticultural Science, 122 (1) : pp. 53-62.

Modélisation et simulation de l'architecture et de la croissance des plantes. De Reffye Philippe, Blaise Frédéric, Guédon Yann. 1993. Revue du Palais de la Découverte. Numéro Spécial, 21 (209) : pp. 22-48.

Book chapter

Estimation of lifetime reproductive success when reproductive status cannot always be assessed. Rouan Lauriane, Gaillard Jean-Michel, Guédon Yann, Pradel Roger. 2009. In : Modeling demographic processes in marked populations. Thomson David L. (ed.), Cooch Evan G. (ed.), Conroy Michael J. (ed.). New York : Springer [Etats-Unis], pp. 867-879. (Environmental and ecological statistics series, 3) ISBN 978-0-387-78150-1
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Measuring and analysing plants with the AMAPmod software. Godin Christophe, Guédon Yann, Costes Evelyne, Caraglio Yves. 1997. In : Plants to ecosystems: advances in computational life sciences = [Des plantes aux écosystèmes : avancées dans l'informatisation des sciences de la vie]. CSIRO. s.l. : CSIRO, pp. 53-84.

Guest paper

Identifying developmental patterns in plant phenotyping data. Guédon Yann. 2018. . European Mathematical Society (EMS) and ESMTB. Lisbonne : European Mathematical Society (EMS)-ESMTB, 1 p. European Conference on Mathematical and Theoretical Biology. Minisymposium Plant Models (A): Plant Development.. 11, Lisbonne, Portugal, 23 July 2018/27 July 2018.
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Segmentation uncertainty in multiple change-point models. Guédon Yann. 2012. In : Séminaire de probabilitités et statistique, 10 décembre 2012, Montpellier, France. s.l. : s.n., Résumé, 1 p. Séminaire de probabilités et statistique, Montpellier, France, 10 December 2012.
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Combinaisons markoviennes et semi-markoviennes de modèles linéaire mixtes : Application à l'identification des composantes de la croissance d'arbres forestiers. Guédon Yann, Chaubert-Pereira Florence, Lavergne Christian, Trottier Catherine. 2011. In : Modèles de Markov cachés et extensions en traitement du signal et des images : journées du GdR ISIS, 30-31 mars 2011. s.l. : s.n., Résumé, 1 p. Journées du GdR ISIS, Paris, France, 30 March 2011/31 March 2011.
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Identifying and characterizing permutation patterns in spiral phyllotaxis. Guédon Yann. 2011. In : Séminaire Agropolis sur la modélisation des plantes = Agropolis Plant Modelling Seminar, 17-18 mars 2011, Montpellier, France. s.l. : s.n., Résumé, 1 p. Séminaire Agropolis sur la modélisation des plantes, Montpellier, France, 17 March 2011/18 March 2011.
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Exploring the segmentation space for models multiple change-point models. Guédon Yann. 2008. In : Workshop on Change-Point Detection Methods and Applications, Paris, France, 11-12 September 2008. AgroParisTech. s.l. : s.n., Résumé, 2 p. Workshop Change-Point Detection Methods and Applications, Paris, France, 11 September 2008/12 September 2008.
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Paper with proceedings

Modeling of growth and phyllotaxic pattern in Eucalyptus grandis. Sabatier Sylvie-Annabel, Guédon Yann, Caraglio Yves, Arnaud Charlène, Brancheriau Loïc, Heinz Christine, Rowe Nicholas. 2018. In : Eucalyptus 2018: Managing Eucalyptus plantation under global changes. Abstracts book. CIRAD, IUFRO, MUSE. Montpellier : CIRAD, p. 165. ISBN 978-2-87614-743-0 Eucalyptus 2018, Montpellier, France, 17 September 2018/21 September 2018.
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The role of hydraulics FSPMs in the context of root breeding : a case study on Pearl Millet. Ndour Adama, Pradal Christophe, Vadez Vincent, Passot Sixtine, Guédon Yann, Laplaze Laurent, Lucas Mikaël. 2018. In : European Geosciences Union General Assembly 2018- volume 20. EGU. Vienne : European Geosciences Union, 1 p. EGU2018 - European Geophysical Union General Assembly 2018, Vienne, Autriche, 8 April 2018/13 April 2018.
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Analysis of bearing and branching behavior of two apricot cultivars. Mészáros M., Guédon Yann, Krska B., Costes Evelyne. 2017. In : Proceedings of the X International Symposium on Modelling in Fruit Research and Orchard Management. Costes Evelyne (ed.). ISHS. Louvain : ISHS, pp. 135-140. (Acta Horticulturae, 1160) ISBN 978-94-6261-1566 International Symposium on Modelling in Fruit Research and Orchard Management. 10, Montpellier, France, 2 June 2015/5 June 2015.
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Modeling developmental growth stages in mango on the basis of absolute vs. relative growth rates. Dambreville Anaëlle, Normand Frédéric, Lauri Pierre-Eric, Guédon Yann. 2017. In : Proceedings of the X International Symposium on Modelling in Fruit Research and Orchard Management. Costes Evelyne (ed.). ISHS. Louvain : ISHS, pp. 69-74. (Acta Horticulturae, 1160) ISBN 978-94-6261-1566 International Symposium on Modelling in Fruit Research and Orchard Management. 10, Montpellier, France, 2 June 2015/5 June 2015.
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The role of structural and temporal factors in the architectural development of the mango tree: evidences from simulation. Boudon Frédéric, Jestin Alexandra, Fernique Pierre, Lauri Pierre-Eric, Dambreville Anaëlle, Guédon Yann, Grechi Isabelle, Normand Frédéric. 2017. In : Proceedings of the X International Symposium on Modelling in Fruit Research and Orchard Management. Costes Evelyne (ed.). ISHS. Louvain : ISHS, pp. 83-90. (Acta Horticulturae, 1160) ISBN 978-94-6261-1566 International Symposium on Modelling in Fruit Research and Orchard Management. 10, Montpellier, France, 2 June 2015/5 June 2015.
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Characterization of mango tree patchiness using a tree-segmentation/clustering approach. Fernique Pierre, Dambreville Anaëlle, Durand Jean-Baptiste, Pradal Christophe, Lauri Pierre-Eric, Normand Frédéric, Guédon Yann. 2016. In : 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA). IEEE, FSPMA. Qingdao : IEEE, pp. 68-74. ISBN 978-1-5090-1659-4 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Qingdao, Chine, 7 November 2016/11 November 2016.
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Identification of developmental zones in maize lateral roots on the basis of longitudinal epidermis cell length profiles. Guédon Yann, Moreno Ortega Beatriz, Muller Bertrand. 2016. In : 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016): Book of abstract oral. IEEE, FSPMA. Qingdao : IEEE, Résumé, p. 42. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Qingdao, Chine, 7 November 2016/11 November 2016.
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Identification of flowering patterns specific to strawberry varieties using longitudinal data analysis. Labadie Marc, Denoyes Béatrice, Guédon Yann. 2016. In : 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016): Book of abstract poster. IEEE, FSPMA. Qingdao : IEEE, Résumé, p. 26. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Qingdao, Chine, 7 November 2016/11 November 2016.
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Lateral root growth: a framework to analyse the variability among elongation patterns and the impact of auxin and sugar signals. Moreno Ortega Beatriz, Muller Bertrand, Guédon Yann. 2015. In : Recent progress in drought tolerance: from genetics to modelling conference handbook. Tardieu F. (ed.), Draye X. (ed.), Charcosset A. (ed.), Hammer G. (ed.), Usadel B. (ed.), Tuberosa R. (ed.), Welker C. (ed.), Boerner A. (ed.), Simic D.(ed.), Boller B. (ed.). Eucarpia, INRA. Montpellier : INRA-Transfert, Résumé, p. 40. EUCARPIA Conference "Recent progress in drought tolerance: from genetics to modelling", Montpellier, France, 8 June 2015/9 June 2015.
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Slope heuristics for multiple change-point models. Guédon Yann. 2015. In : Proceedings of the 30th International Workshop on Statistical Modelling. Friedl Herwig (ed.), Wagner Helga (ed.). Linz : Statistical Modelling Society, pp. 103-106. International Workshop on Statistical Modelling. 30, Linz, Autriche, 6 July 2015/10 July 2015.
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Using hidden semi-markov chains to compare the shoot structure of three different almond cultivars. Negron Claudia, Contador Loreto, Lampinen Bruce D., Metcalf Samuel G., Guédon Yann, Costes Evelyne, Dejong Thedore M.. 2015. In : Proceedings of the ninth International Symposium on Modelling in Fruit Research and Orchard Management. Bourgeois G. (éd.). ISHS. Saint-Jean-sur-Richelieu : G. Bourgeois, pp. 67-76. (Acta Horticulturae : ISHS, 1068) ISBN 978-94-62610-58-3 International Symposium on Modelling in Fruit Research and Orchard Management. 9, Saint-Jean-sur-Richelieu, Canada, 19 June 2011/23 June 2011.
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Estimation of discrete partially directed acyclic graphical models in multitype branching processes. Fernique Pierre, Durand Jean-Baptiste, Guédon Yann. 2014. In : Proceedings of COMPSTAT 2014, August 19-22, 2014, Geneva, Switzerland. Manfred Gilli, Gil Gonzalez-Rodriguez, Alicia Nieto-Reyes (eds.) - Genève : Université de Genève, 2014. s.l. : s.n., pp. 561-568. ISBN 978-2-8399-1347-8 International Conference on Computational Statistics. 21, Genève, Suisse, 19 August 2014/22 August 2014.
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How plant water status affects the structure of proleptic shoots of almond trees. Negron Claudia, Contador Loreto, Lampinen Bruce D., Metcalf Samuel G., Guédon Yann, Costes Evelyne, Dejong Thedore M.. 2014. In : Proceedings of the sixth International Symposium on Almonds and Pistachios, 27-31 May 2013, Murcia, Spain. Eds. F. Dicenta,, P. Martínez-Gómez, E. Ortega. Leuven : ISHS, pp. 95-98. (Acta horticulturae, 1028) ISBN 978-94-62610-13-2 International Symposium on Almonds and Pistachios. 6, Murcia, Espagne, 27 May 2013/31 May 2013.
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Partitioned conditional generalized linear models for categorical data. Peyhardi Jean, Trottier Catherine, Guédon Yann. 2014. In : Proceedings of the 29th International Workshop on Statistical Modelling, Volume 1, July 14-18, 2013, Göttingen, Germany. Eds. Thomas Kneib, Fabian Sobotka, Jan Fahrenholz, Henriette Irmer. Göttingen : Centre for Statistics, pp. 269-272. International Workshop on Statistical Modelling. 29, Göttingen, Allemagne, 14 July 2014/18 July 2014.
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Quantifying and localizing state uncertainty in hidden Markov models using conditional entropy profiles. Durand Jean-Baptiste, Guédon Yann. 2014. In : Proceedings of COMPSTAT 2014, August 19-22, 2014, Geneva, Switzerland. Manfred Gilli, Gil Gonzalez-Rodriguez, Alicia Nieto-Reyes (eds.) - Genève : Université de Genève, 2014. s.l. : s.n., pp. 213-221. ISBN 978-2-8399-1347-8 International Conference on Computational Statistics. 21, Genève, Suisse, 19 August 2014/22 August 2014.
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Characterizing the balance between ontogeny and environmental constraints in forest tree development using growth phase duration distributions. Guédon Yann, Taugourdeau Olivier, Caraglio Yves, Sabatier Sylvie-Annabel. 2013. In : Proceedings of the 7th International Conference on Functional-Structural Plant Models (FSPM2013), Saariselkä, Finland, 9-14 June 2013. Eds. Risto Sievänen, Eero Nikinmaa, Christophe Godin, Anna Lintunen, Pekka Nygren. Vantaa : Finnish Society of Forest Science, pp. 237-239. ISBN 978-951-651-408-9 International Conference on Functional-Structural Plant Models. 7, Saariselkä, Finlande, 9 June 2013/14 June 2013.
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Deciphering mango tree asynchronisms using Markov tree and probabilistic graphical models. Dambreville Anaëlle, Fernique Pierre, Pradal Christophe, Lauri Pierre-Eric, Normand Frédéric, Guédon Yann, Durand Jean-Baptiste. 2013. In : Proceedings of the 7th International Conference on Functional-Structural Plant Models (FSPM2013), Saariselkä, Finland, 9-14 June 2013. Eds. Risto Sievänen, Eero Nikinmaa, Christophe Godin, Anna Lintunen, Pekka Nygren. Vantaa : Finnish Society of Forest Science, pp. 210-212. ISBN 978-951-651-408-9 International Conference on Functional-Structural Plant Models. 7, Saariselkä, Finlande, 9 June 2013/14 June 2013.
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Estimating the genetic value of F1 apple progenies for irregular bearing during first years of production. Durand Jean-Baptiste, Guitton Baptiste, Peyhardi Jean, Holtz Yan, Guédon Yann, Trottier Catherine, Costes Evelyne. 2013. In : Proceedings of the 7th International Conference on Functional-Structural Plant Models (FSPM2013), Saariselkä, Finland, 9-14 June 2013. Eds. Risto Sievänen, Eero Nikinmaa, Christophe Godin, Anna Lintunen, Pekka Nygren. Vantaa : Finnish Society of Forest Science, Résumé, pp. 13-15. ISBN 978-951-651-408-9 International Conference on Functional-Structural Plant Models. 7, Saariselkä, Finlande, 9 June 2013/14 June 2013.
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Integrative models for analyzing jointly shoot growth and branching patterns. Peyhardi Jean, Costes Evelyne, Caraglio Yves, Lauri Pierre-Eric, Trottier Catherine, Guédon Yann. 2013. In : Proceedings of the 7th International Conference on Functional-Structural Plant Models (FSPM2013), Saariselkä, Finland, 9-14 June 2013. Eds. Risto Sievänen, Eero Nikinmaa, Christophe Godin, Anna Lintunen, Pekka Nygren. Vantaa : Finnish Society of Forest Science, pp. 207-209. ISBN 978-951-651-408-9 International Conference on Functional-Structural Plant Models. 7, Saariselkä, Finlande, 9 June 2013/14 June 2013.
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Protocol for foliage modeling and light partitioning in Coffea arabica. Rakocevic Miroslava, Takeshi Matsunaga Fabio, Costes Evelyne, Barbosa Tosti Jonas, Guédon Yann, De Cassia Santin Leticia, Luiz Johann André. 2013. In : Proceedings of the 7th International Conference on Functional-Structural Plant Models (FSPM2013), Saariselkä, Finland, 9-14 June 2013. Eds. Risto Sievänen, Eero Nikinmaa, Christophe Godin, Anna Lintunen, Pekka Nygren. Vantaa : Finnish Society of Forest Science, pp. 284-286. ISBN 978-951-651-408-9 International Conference on Functional-Structural Plant Models. 7, Saariselkä, Finlande, 9 June 2013/14 June 2013.
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A unifying framework for specifying generalized linear models for categorical data. Peyhardi Jean, Trottier Catherine, Guédon Yann. 2013. In : Proceedings of the 28th International Workshop on Statistical Modelling (IWSM 2013), 08-12 July 2013, Palermo, Italy. Vol. 1. Eds. V. Muggeo, V. Capursi, G. Boscaino, G. Lovison. Amsterdam : Statistical Modelling Society, pp. 331-335. ISBN 978-88-96251-47-8 International Workshop on Statistical Modelling. 28, Palermo, Italie, 8 August 2013/12 August 2013.
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Using concepts of shoot growth and architecture to understand and predict responses of peach trees to pruning. Dejong Thedore M., Negron Claudia, Favreau Romeo, Day K.R., Costes Evelyne, Lopez G., Guédon Yann. 2012. In : Proceedings of the Seventh International peach symposium, Lleida, Spain, June 8-11, 2009. Girona Joan (ed.), Marsal Jordi (ed.). ISHS-Working Group on Peach Culture. Louvain : ISHS [Belgique], pp. 225-232. (Acta Horticulturae, 962) ISBN 978-90-6605-615-2 International peach symposium. 7, Lleida, Espagne, 8 June 2009/11 June 2009.
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Effects of pruning on the apple tree: from tree architecture to modelling. Fumey Damien, Lauri Pierre-Eric, Guédon Yann, Godin Christophe, Costes Evelyne. 2011. In : Proceedings of the Ninth International Symposium on Integrating canopy, rootstock and environmental physiology in orchard systems, Geneva, New York, USA, August 4-8, 2008. Robinson Terence L. (ed.). ISHS. Louvain : ISHS [Belgique], pp. 597-602. (Acta Horticulturae, 903) ISBN 978-90-6605-297-0 International Symposium on Integrating canopy, rootstock and environmental physiology in orchard systems. 9, Geneva, États-Unis, 4 August 2008/8 August 2008.

A combinatorial model of phyllotaxis perturbations in Arabidopsis thaliana. Refahi Yassin, Farcot Etienne, Guédon Yann, Besnard Fabrice, Vernoux Teva, Godin Christophe. 2011. In : Combinatorial pattern matching : 22nd Annual Symposium, CPM 2011, Palermo, Italy, June 27-29, 2011. by Giancarlo, Raffaele and Manzini, Giovanni (Eds.). Heidelberg : Springer, pp. 323-335. (Lecture notes in computer science, vol. 6661) ISBN 978-3-642-21457-8 CPM 2011. 21, Palerme, Italie, 27 June 2011/29 June 2011.
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Analysis of the flowering time in apple and pear and bud break in vine, in relation to global warming in France. Atauri I.G.C., Brisson Nadine, Baculat B., Calléja M., Farrera Isabelle, Legave Jean Michel, Guédon Yann. 2010. In : Proceedings of the Eight International Symposium on Temperate zone fruits in the tropics and subtropics, Florianopolis, Brazil, October 21-25, 2007. Herter Flavio Gilberto (ed.), Leite Gabriel Berenhauser (ed.), Raseira M. do C.B. (ed.). ISHS. Louvain : ISHS [Belgique], pp. 61-68. (Acta Horticulturae, 872) ISBN 978-90-6605-533-9 International Symposium on Temperate Zone Fruits in the Tropics and Subtropics. 8, Florianopolis, Brésil, 21 October 2007/25 October 2007.
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Integrating biomechanical and markov chain models into an L-system simulation of architectural development of apple trees. Smith Colin, Godin Christophe, Guédon Yann, Prusinkiewicz Przemyslaw, Costes Evelyne. 2008. In : Proceedings of the Eighth International symposium on modelling in fruit research and orchard management, Einsiedeln/Wädenswil, Switzerland, July 1-5, 2007. Samietz Jörg (ed.). Louvain : ISHS [Belgique], pp. 193-200. (Acta Horticulturae, 803) ISBN 978-90-6605-681-7 International Symposium on Modelling in Fruit Research and Orchard Management. 8, Einsiedeln, Suisse, 1 July 2007/5 July 2007.

Integrating markov chain models and L-systems to simulate the architectural development of apple trees. Renton Michael, Costes Evelyne, Guédon Yann, Godin Christophe. 2006. In : Proceedings of the Seventh International Symposium on Modelling in fruit research and orchard management, Copenhagen, Denmark, June 20-24, 2004. Braun P. (ed.). ISHS. Louvain : ISHS [Belgique], pp. 63-70. (Acta Horticulturae, 707) ISBN 90-6605-460-3 International Symposium on Modelling in Fruit Research and Orchard Management. 7, Copenhague, Danemark, 20 June 2004/24 June 2004.

Modélisation de la croissance d'un axe végétatif. Guédon Yann, Costes Evelyne. 1997. In : Modélisation et simulation de l'architecture des végétaux. Bouchon Jean (ed.), De Reffye Philippe (ed.), Barthélémy Daniel (ed.). INRA, CIRAD-GERDAT-AMAP. Paris : INRA, pp. 173-185. (Science update) ISBN 2-7380-0706-6 Colloque sur l'architecture des arbres fruitiers et forestiers, Montpellier, France, 23 November 1993/25 November 1993.

Modélisation de séquence d'évènements décrivant la mise en place d'éléments botaniques. Guédon Yann. 1997. In : Modélisation et simulation de l'architecture des végétaux. Bouchon Jean (ed.), De Reffye Philippe (ed.), Barthélémy Daniel (ed.). INRA, CIRAD-GERDAT-AMAP. Paris : INRA, pp. 187-202. (Science update) ISBN 2-7380-0706-6 Colloque sur l'architecture des arbres fruitiers et forestiers, Montpellier, France, 23 November 1993/25 November 1993.

Modelling of the branching process of the root system of young oil palm seedlings. A markovian approach. Jourdan Christophe, Rey Hervé, Guédon Yann. 1995. In : Structure and function of roots. Baluska F. (ed.), Ciamporova M. (ed.), Gasparikova O. (ed.), Barlow P.W. (ed.). Dordrecht : Kluwer Academic Publishers, pp. 113-119. (Developments in Plant and Soil Sciences, vol. 58) ISBN 0-7923-2832-9 International Symposium on Structure and Function of Roots. 4, Stara Lesna, Slovaquie, 20 June 1993/26 June 1993.

Poster

Deciphering the balance between sexual and asexual plant reproduction in an herbaceous perennial, the strawberry. [Poster-D268]. Gaston Amèlia, Potier A., Tenreira T., Labadie Marc, Petit Aurélie, Bres Cécile, Perrotte Justine, Demene M.N., Guédon Yann, Rothan Christophe, Hernould Michel, Delmas Frédéric. 2018. In : Abstracts of 12th IPMB2018. Agropolis Fondation, MUSE, l'INRA, le CNRS, Montpellier SupAgro, l'Université de Montpellier, l'IRD, CIRAD, la SFBV, le Labex Tulip, la SPS, Molecular Plant, The Plant Cell, Communications Biology, la Région Occitanie - Pyrénées/Méditerranée. Montpellier : IPMB, Résumé, p. 184. Congress of the International Plant Molecular Biology ( IPMB2018). 12, Montpellier, France, 5 August 2018/10 August 2018.
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Impact of three lateral root types identified in pearl millet on water uptake. Passot Sixtine, Meunier Félicien, Couvreur V., Muller Bertrand Lionel, Javaux Mathieu, Draye Xavier, Guédon Yann, Laplaze Laurent. 2017. . Hyderabad : ICRISAT, 1 poster InterDrought. 5, Hyderabad, Inde, 21 February 2017/25 February 2017.
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An FSPM approach for modeling fruit yield and quality in mango trees. Boudon Frédéric, Persello Séverine, Jestin Alexandra, Briand Anne-Sarah, Fernique Pierre, Guédon Yann, Lechaudel Mathieu, Grechi Isabelle, Normand Frédéric. 2016. In : Book of abstracts poster: 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016). FSPM, PMA. Qingdao : FSPMA, p. 81. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Qingdao, Chine, 7 November 2016/11 November 2016.
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Historical phenological responses in apple tree to contrasting warming contexts may clarify future crucial responses in Europe. Legave Jean Michel, Guédon Yann, Malagi Gustavo, El Yaacoubi Adnane, Bonhomme Marc, Farrera Isabelle. 2016. . Magny-le-Hongre : INRA, 1 poster Séminaire « Recherche et adaptation au changement climatique », Magny-le-Hongre, France, 10 March 2016/11 March 2016.
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Using genome-wide predictions in a functional-structural plant model to simulate the genetic variation of 1-year-old apple tree development under contrasted soil water conditions. Migault Vincent, Pallas Benoît, Legave Jean Michel, Guédon Yann, Costes Evelyne. 2016. In : 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016): Book of abstract poster. IEEE, FSPMA. Qingdao : IEEE, Résumé, p. 96. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Qingdao, Chine, 7 November 2016/11 November 2016.
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A multi-scale pipeline for reproducible analyses of tomato leaf expansion and its plasticity in response to drought. Koch Garance, Dambreville Anaëlle, Rolland Gaëlle, Dauzat Myriam, Chevalier Christian, Frangne Nathalie, Guédon Yann, Bertin Nadia, Baldazzi Valentina, Granier Christine. 2015. . Montpellier : ISHS, 1 poster International Symposium on Computer Modelling in Fruit Research and Orchard Management. 10, Montpellier, France, 2 June 2015/5 June 2015.
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Phenotyping root development in pearl millet, an orphan cereal from arid regions. Passot Sixtine, Atkinson Jonathan, Moreno Ortega Beatriz, Moukouanga Daniel, Lucas Mikaël, Guyomarc'h Soizic, Kane Ndjido Ardo, Hash Charles Thomas, Bennett Malcolm J., Muller Bertrand Lionel, Sturock Craig, Wells Darren, Vigouroux Yves, Guédon Yann, Laplaze Laurent. 2014. In : SEB Manchester 2014 Plant Biology Sessions: Mechanisms of Plant-Insect Interactions, Manchester, United Kingdom, 3rd - 4th July 2014. Rob Hancock, Saskia Hogenhout, Christine H. Foyer. s.l. : s.n., 1 p. SEB Manchester 2014 Plant Biology Sessions: Mechanisms of Plant-Insect Interactions, Manchester, Royaume-Uni, 3 July 2014/4 July 2014.
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Why is lateral root growth so variable? A framework to analyze growth variability among lateral roots and the possible roles of auxin and carbon. Moreno-Ortega Beatriz, Chandezon Emilie, Fort Guillaume, Guédon Yann, Muller Bertrand Lionel. 2014. In : 7th International Symposium on Root Development: Adventitious, lateral and primary roots - at the crossroads of genome, environment and technology, 15-19 September 2014, Weimar, Germany. s.l. : s.n., 1 p. International Symposium on Root Development. 7, Weimar, Allemagne, 15 September 2014/19 September 2014.
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Paper without proceedings

Combined genetic, genomic and physiological approaches to characterize flowering in Fragaria [W324]. Gaston Amèlia, Perrotte Justine, Tenreira T., Demene M.N., Potier A., Petit Aurélie, Guédon Yann, Godin Christophe, Rothan Christophe, Denoyes Béatrice. 2015. In : Plant and Animal Genomes Conference XXIII Conference, San diego, United States, San Diego, United States, January 10-14, 2015. s.l. : s.n., Résumé Plant and Animal Genome Conference. 23, San Diego, États-Unis, 10 January 2015/14 January 2015.
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Détection de motifs disruptifs au sein de plantes : une approche de quotientement/classification d'arborescences. Fernique Pierre, Durand Jean-Baptiste, Guédon Yann. 2015. . Lille : SFdS, 6 p. Journées de Statistique de la SFdS. 47, Lille, France, 1 June 2015/5 June 2015.
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Exploring root development and architecture in one of the most heat and drought tolerant cereals, pearl millet. Passot Sixtine, Gnacko Fatoumata, Atkinson Jonathan, Atkinson Brian, Lucas Mikaël, Guyomarc'h Soazig, Boudon Frédéric, Couderc Marie, Zekraoui Leïla, Sturrock Craig, Kane Ndjido Ardo, Hash Charles Tom, Gantet Pascal, Bennett Malcolm J., Wells Darren, Vigouroux Yves, Guédon Yann, Laplaze Laurent. 2015. . Barcelona : EPPN-IPPN, Résumé, 1 p. Plant Phenotyping Symposium, Barcelone, Espagne, 11 November 2015/12 November 2015.
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Heuristique de pente pour les modèles de détection de ruptures multiples. Guédon Yann. 2015. . Lille : SFdS, 6 p. Journées de Statistique de la SFdS. 47, Lille, France, 1 June 2015/5 June 2015.
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Modelés références de régression multinomiale. Propriétés et applications en classification supervisée. Peyhardi Jean, Trottier Catherine, Guédon Yann. 2014. In : 46ème Journées de statistique, Rennes, France, du 2 au 6 juin 2014. Société française de statistique. s.l. : s.n., 6 p. Journées de statistique. 46, Rennes, France, 2 June 2014/6 June 2014.
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Modèles graphiques paramétriques pour la modélisation des lois de génération dans des processus de branchement multitypes. Fernique Pierre, Durand Jean-Baptiste, Guédon Yann. 2014. In : 46ème Journées de statistique, Rennes, France, du 2 au 6 juin 2014. Société française de statistique. s.l. : s.n., 6 p. Journées de statistique. 46, Rennes, France, 2 June 2014/6 June 2014.
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Quantification de l'incertitude sur la structure latente dans les modèles de Markow cachés. Durand Jean-Baptiste, Guédon Yann. 2014. In : 46ème Journées de statistique, Rennes, France, du 2 au 6 juin 2014. Société française de statistique. s.l. : s.n., 6 p. Journées de statistique. 46, Rennes, France, 2 June 2014/6 June 2014.
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Towards identifying the dynamic cellular patterns underlying early Arabidopsis floral development. Legrand Jonathan, Mirabet Vincent, Boudon Frédéric, Guignard Léo, Cellier Coralie, Godin Christophe, Traas Jan, Boudaoud Arezki, Guédon Yann, Das Pradeep. 2013. In : Workshop on Molecular Mechanisms Controlling Flower Development, Presqu'île de Giens, France, 8th-12th June 2013. s.l. : s.n., Résumé, 1 p. Workshop on Molecular Mechanisms Controlling Flower Development, Presqu'île de Giens, France, 8 June 2013/12 June 2013.
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GLM multinomial hiérarchique. Peyhardi Jean, Trottier Catherine, Guédon Yann. 2012. In : 44e Journées de Statistique, Bruxelles, Belgique, 21 au 25 mai 2012. Société Française de Statistique (SFdS). s.l. : s.n., 6 p. Journées de statistiques. 44, Bruxelles, Belgique, 21 May 2012/25 May 2012.
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Incertitude sur la segmentation pour les modèles de détection de ruptures multiples. Guédon Yann. 2012. In : 44e Journées de Statistique, Bruxelles, Belgique, 21 au 25 mai 2012. Société Française de Statistique (SFdS). s.l. : s.n., 6 p. Journées de statistiques. 44, Bruxelles, Belgique, 21 May 2012/25 May 2012.
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Analyzing perturbations in phyllotaxis of Arabidopsis thaliana. Refahi Yassin, Guédon Yann, Besnard Fabrice, Farcot Etienne, Godin Christophe, Vernoux Teva. 2010. In : Proceedings of the 6th International Workshop on Functional-Structural Plant Models, FSPM 2010, September 12-17, 2010, University of California, Davis (USA). Dejong Thedore M. (ed.), Da Silva David (ed.). University of California-Department of Plant Sciences. Davis : University of California, pp. 185-187. International Workshop on Functional-Structural Plant Models. 6, Davis, États-Unis, 12 September 2010/17 September 2010.
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Competition-based model of pruning : applications to apple trees. Cokelaer Thomas, Fumey Damien, Guédon Yann, Costes Evelyne, Godin Christophe. 2010. In : Proceedings of the 6th International Workshop on Functional-Structural Plant Models, FSPM 2010, September 12-17, 2010, University of California, Davis (USA). Dejong Thedore M. (ed.), Da Silva David (ed.). University of California-Department of Plant Sciences. Davis : University of California, pp. 97-99. International Workshop on Functional-Structural Plant Models. 6, Davis, États-Unis, 12 September 2010/17 September 2010.
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Intrinsic determinants of mango tree growth and reproduction : Consequences on functional-structural modeling. Dambreville Anaëlle, Normand Frédéric, Guédon Yann, Lauri Pierre-Eric. 2010. In : Proceedings of the 6th International Workshop on Functional-Structural Plant Models, FSPM 2010, September 12-17, 2010, University of California, Davis (USA). Dejong Thedore M. (ed.), Da Silva David (ed.). University of California-Department of Plant Sciences. Davis : University of California, p. 279. International Workshop on Functional-Structural Plant Models. 6, Davis, États-Unis, 12 September 2010/17 September 2010.
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Modeling complex perennial plant patterns. Guédon Yann, Caraglio Yves, Costes Evelyne. 2010. In : Proceedings of the 6th International Workshop on Functional-Structural Plant Models, FSPM 2010, September 12-17, 2010, University of California, Davis (USA). Dejong Thedore M. (ed.), Da Silva David (ed.). University of California-Department of Plant Sciences. Davis : University of California, pp. 215-217. International Workshop on Functional-Structural Plant Models. 6, Davis, États-Unis, 12 September 2010/17 September 2010.
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Modeling the structure and dynamics of the auxin signaling network in the shoot apical meristem. Farcot Etienne, Guédon Yann, Brunoud Géraldine, Legrand Jonathan, Van Den Daele Hilde, Picard Franck, De Veylder Lieven, Vernoux Teva. 2010. In : Proceedings of the 6th International Workshop on Functional-Structural Plant Models, FSPM 2010, September 12-17, 2010, University of California, Davis (USA). Dejong Thedore M. (ed.), Da Silva David (ed.). University of California-Department of Plant Sciences. Davis : University of California, pp. 161-163. International Workshop on Functional-Structural Plant Models. 6, Davis, États-Unis, 12 September 2010/17 September 2010.
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Exploring the segmentation space for multiple change-point models. Guédon Yann. 2008. In : 24th International Biometric Conference, 13-18 July, 2008, Dublin, Irlande. s.l. : s.n., Résumé, 1 p. International Biometric Conference. 24, Dublin, Irlande, 13 July 2008/18 July 2008.
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Semi-Markov switching linear mixed model for analyzing forest tree development. Chaubert-Pereira Florence, Guédon Yann, Lavergne Christian, Trottier Catherine. 2008. In : 24th International Biometric Conference, 13-18 July, 2008, Dublin, Irlande. s.l. : s.n., Résumé, 1 p. International Biometric Conference. 24, Dublin, Irlande, 13 July 2008/18 July 2008.
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Identifying and characterizing the ontogenetic component in tree development. Guédon Yann, Caraglio Yves, Heuret Patrick, Lebarbier Emilie, Meredieu Céline. 2007. In : Proceedings : Abstracts of papers and posters of the 5th International Workshop on Functional Structural Plant Models, November 4-9, 2007, Napier, New Zealand. Eds by Prusinkiewicz P., Hanan J., Lane B. Napier : HortResearch, pp. 38-42. International Workshop on Functional-Structural Plant Models. 5, Napier, Nouvelle-Zélande, 4 November 2007/9 November 2007.
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Linking carbon economy and architectural development of peach trees by integrating markovian models into L-PEACH. Costes Evelyne, Smith Colin, Favreau Romeo, Guédon Yann, Dejong Thedore M.. 2007. In : Proceedings : Abstracts of papers and posters of the 5th International Workshop on Functional Structural Plant Models, November 4-9, 2007, Napier, New Zealand. Eds by Prusinkiewicz P., Hanan J., Lane B. Napier : HortResearch, pp. 39-41. International Workshop on Functional-Structural Plant Models. 5, Napier, Nouvelle-Zélande, 4 November 2007/9 November 2007.
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OpenAlea: An open-source platform for the integration of heterogeneous FSPM components. Dufour-Kowalski Samuel, Pradal Christophe, Dones Nicolas, Barbier de Reuille Pierre, Boudon Frédéric, Chopard Jérôme, DaSilva D., Durand Jean-Baptiste, Ferraro Pascal, Fournier Christian, Guédon Yann, Ouangraoua A., Smith C., Stoma Szymon, Theveny Frédéric, Sinoquet Hervé, Godin C.. 2007. In : Proceedings : Abstracts of papers and posters of the 5th International Workshop on Functional Structural Plant Models, November 4-9, 2007, Napier, New Zealand. Eds by Prusinkiewicz P., Hanan J., Lane B. Napier : HortResearch, pp. 36-1. International Workshop on Functional-Structural Plant Models. 5, Napier, Nouvelle-Zélande, 4 November 2007/9 November 2007.
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Simulation of apple tree development using mixed statistical and Biomechanical models. Smith Colin, Godin Christophe, Guédon Yann, Prusinkiewicz Przemyslaw, Costes Evelyne. 2007. In : Proceedings : Abstracts of papers and posters of the 5th International Workshop on Functional Structural Plant Models, November 4-9, 2007, Napier, New Zealand. Eds by Prusinkiewicz P., Hanan J., Lane B. Napier : HortResearch, pp. 31-34. International Workshop on Functional-Structural Plant Models. 5, Napier, Nouvelle-Zélande, 4 November 2007/9 November 2007.
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The seed plant Moresnetia : morphology and anatomy of the stem and fertile frond. Prestianni Cyrille, Caraglio Yves, Guédon Yann, Meyer-Berthaud Brigitte, Gerrienne Philippe. 2007. In : Botany and Plant biology 2007 Joint Congress, July 7-11, 2007, Chicago, United States. AFS, ASPB, ASPT, BSA. Columbus : Botanical Society of America, Résumé Botany and Plant Biology 2007 Joint Congress, Chicago, États-Unis, 7 July 2007/11 July 2007.
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A statistical model for analyzing jointly growth phases, the influence of environmental factors and inter-individual heterogeneity : Applications to forest trees. Chaubert Florence, Caraglio Yves, Lavergne Christian, Trottier Catherine, Guédon Yann. 2007. In : Proceedings : Abstracts of papers and posters of the 5th International Workshop on Functional Structural Plant Models, November 4-9, 2007, Napier, New Zealand. Eds by Prusinkiewicz P., Hanan J., Lane B. Napier : HortResearch, pp. 43-45. International Workshop on Functional-Structural Plant Models. 5, Napier, Nouvelle-Zélande, 4 November 2007/9 November 2007.
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Analysis of longitudinal data applied to plant architecture study. Véra Carine, Guédon Yann, Lavergne Christian, Caraglio Yves. 2004. In : Proceedings of the 4th International workshop on functional-structural plant models (FSPM), abstracts of papers and posters, 7-11 June 2004, Montpellier, France. Godin Christophe (ed.), Hanan Jim (ed.), Kurth Winfried (ed.), Lacointe André (ed.), Takenaka Akio (ed.), Prusinkiewicz Przemyslaw (ed.), Dejong Thedore M. (ed.), Beveridge Christine (ed.). CIRAD-AMIS-UMR AMAP. Montpellier : CIRAD-AMAP, pp. 65-69. International Workshop on Functional-Structural Plant Models (FSPM). 4, Montpellier, France, 7 June 2004/11 June 2004.

Analysis of the plant architecture via tree-structured statistical models : The hidden Markov trees. Durand Jean-Baptiste, Guédon Yann, Caraglio Yves, Costes Evelyne. 2004. In : Proceedings of the 4th International workshop on functional-structural plant models (FSPM), abstracts of papers and posters, 7-11 June 2004, Montpellier, France. Godin Christophe (ed.), Hanan Jim (ed.), Kurth Winfried (ed.), Lacointe André (ed.), Takenaka Akio (ed.), Prusinkiewicz Przemyslaw (ed.), Dejong Thedore M. (ed.), Beveridge Christine (ed.). CIRAD-AMIS-UMR AMAP. Montpellier : CIRAD-AMAP, pp. 61-64. International Workshop on Functional-Structural Plant Models (FSPM). 4, Montpellier, France, 7 June 2004/11 June 2004.

Methods for analyzing plant structure at different scales. Guédon Yann. 2004. In : Proceedings of the 4th International workshop on functional-structural plant models (FSPM), abstracts of papers and posters, 7-11 June 2004, Montpellier, France. Godin Christophe (ed.), Hanan Jim (ed.), Kurth Winfried (ed.), Lacointe André (ed.), Takenaka Akio (ed.), Prusinkiewicz Przemyslaw (ed.), Dejong Thedore M. (ed.), Beveridge Christine (ed.). CIRAD-AMIS-UMR AMAP. Montpellier : CIRAD-AMAP, pp. 51-55. International Workshop on Functional-Structural Plant Models (FSPM). 4, Montpellier, France, 7 June 2004/11 June 2004.

Simulating the architectural development of apple trees. Renton Michael, Costes Evelyne, Guédon Yann, Godin Christophe. 2004. In : Proceedings of the 4th International workshop on functional-structural plant models (FSPM), abstracts of papers and posters, 7-11 June 2004, Montpellier, France. Godin Christophe (ed.), Hanan Jim (ed.), Kurth Winfried (ed.), Lacointe André (ed.), Takenaka Akio (ed.), Prusinkiewicz Przemyslaw (ed.), Dejong Thedore M. (ed.), Beveridge Christine (ed.). CIRAD-AMIS-UMR AMAP. Montpellier : CIRAD-AMAP, p. 266. International Workshop on Functional-Structural Plant Models (FSPM). 4, Montpellier, France, 7 June 2004/11 June 2004.

AMAPmod : visao geral. Godin Christophe, Guédon Yann, Bellouti Samir (collab.), Ferraro Pascal (collab.), Nouguier Christophe (collab.), Dones Nicolas (collab.), Adam Boris (collab.), Caraglio Yves (collab.), Costes Evelyne (collab.), Sinoquet Hervé (collab.). 2003. In : Memorias do workshop internacional sobre digitalizaçao para arquitetura tridimensional - 3D em sistemas agroflorestais. Rakocevic Miroslava, Medrado Moacir José Sales, Ribaski Jorge. EMBRAPA-Florestas. Brasilia : EMBRAPA, pp. 25-65. (Documentos) Workshop International sobre Digitalizaçao para Arquitetura Tridimensional - 3D em Sistemas Agroflorestais, Curitiba, Brésil, 4 November 2002/8 November 2002.

Une nouvelle approche d'agrégation des états d'une chaîne de Markov. Guédon Yann. 2001. In : Actes des XXXIII èmes Journées de statistique, Nantes, 14-18 mai 2001. Société Française de Statistique. Paris : SFdS, pp. 400-403. Journées de statistique. 33, Nantes, France, 14 May 2001/18 May 2001.

Analyzing spatial structures in forest tree architectures. Guédon Yann, Barthélémy Daniel, Caraglio Yves. 1999. In : Empirical and process-based models for forest tree and stand growth simulation = [Modèles empiriques et mécanistes pour la simulation de la croissance d'arbres et de peuplements forestiers]. Amaro A. (ed.), Tomé M. (ed.). Oeiras : Salamandra, pp. 23-42. Workshop on Empirical and Process-based Models for Forest Tree and Stand Growth Simulation, Oeiras, Portugal, 21 September 1997/27 September 1997.

A statistical approach for analyzing sequences in fruit tree architecture. Guédon Yann, Costes Evelyne. 1999. In : Proceedings of the fifth international symposium on computer modelling in fruit research and orchard management = [Actes du 5ème symposium international sur la modélisation informatique appliquée à la recherche fruitière et à la gestion des vergers]. Wagen. Wageningen : ISHS, pp. 281-288. (Acta Horticulturae, 499) International Symposium on Computer Modelling in Fruit Research and Orchard Management. 5, Wageningen, Pays-Bas, 28 July 1998/31 July 1998.

Analyse de la floraison le long de rameaux fructifères chez les Prunus. Fournier D., Costes Evelyne, Guédon Yann. 1998. In : Architecture et modélisation en arboriculture fruitière. INRA, CTIFL, CIRAD, ENSAM. Montpellier : INRA, pp. 85-89. Colloque sur les recherches fruitières. 11, Montpellier, France, 5 March 1998/6 March 1998.
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Analyse de la répartition des rameaux axillaires chez de jeunes scions de pommiers. Costes Evelyne, Guédon Yann. 1998. In : Architecture et modélisation en arboriculture fruitière. INRA, CTIFL, CIRAD, ENSAM. Montpellier : INRA, pp. 66-74. Colloque sur les recherches fruitières. 11, Montpellier, France, 5 March 1998/6 March 1998.
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Analyse de séquences discrètes par des semi-chaînes de Markov cachées. Guédon Yann. 1998. In : Actes des XXXèmes journées de statistique. Volume II : communications libres = [Proceedings of the 30th statistics days. Volume II : free communications]. Ecole Nationale de la Statistique et de l'Analyse de l'Information. s.l. : s.n., pp. 282-284. Journées de statistique. 30, Bruz, France, May 1998.

Analyse du suivi de croissance d'un cultivar de caféier (Coffea canephora Pierre) en Côte d'Ivoire. Cilas Christian, Guédon Yann, Montagnon Christophe, De Reffye Philippe. 1998. In : Architecture et modélisation en arboriculture fruitière. INRA, CTIFL, CIRAD, ENSAM. Montpellier : INRA, pp. 46-55. Colloque sur les recherches fruitières. 11, Montpellier, France, 5 March 1998/6 March 1998.
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Analyse et modélisation de la répartition des rameaux axillaires et des floraisons chez les arbres fruitiers. Costes Evelyne, Guédon Yann. 1998. In : Architecture et modélisation en arboriculture fruitière. INRA, CTIFL, CIRAD, ENSAM. Montpellier : INRA, pp. 56-65. Colloque sur les recherches fruitières. 11, Montpellier, France, 5 March 1998/6 March 1998.
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Exploration et analyse de l'architecture des arbres fruitiers. Godin Christophe, Guédon Yann, Costes Evelyne. 1998. In : Architecture et modélisation en arboriculture fruitière. INRA, CTIFL, CIRAD, ENSAM. Montpellier : INRA, pp. 33-45. Colloque sur les recherches fruitières. 11, Montpellier, France, 5 March 1998/6 March 1998.
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Hidden semi-Markov chains : a new tool for analyzing nonstationary discrete sequences. Guédon Yann. 1998. In : Proceedings of the 2nd international symposium on semi-markov models : theory and applications = [Actes du 2ème symposium international sur les semi-modèles de Markov : théorie et applications]. Janssen J. (ed.), Limnios N. (ed.). Compiègne : UTC, pp. 1-7. International symposium on semi markov models: theory and applications. 2, Compiègne, France, 9 December 1998/11 December 1998.

Structure de scions d'un an de noyer commun, Juglans regia, variété Lara greffés sur trois porte-greffe (Juglans nigra, J. regia, J. nigra x J. regia). Sabatier Sylvie-Annabel, Ducousso I., Guédon Yann, Barthélémy Daniel, Germain E.. 1998. In : Architecture et modélisation en arboriculture fruitière. INRA, CTIFL, CIRAD, ENSAM. Montpellier : INRA, pp. 75-84. Colloque sur les recherches fruitières. 11, Montpellier, France, 5 March 1998/6 March 1998.
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L'algorithme EM : principe et application aux données de comptage. Guédon Yann. 1997. In : Données comptage. Bar-Hen Avner (ed.). CIRAD-GERDAT-DIRECTION SCIENTIFIQUE. Montpellier : CIRAD, pp. 215-234. (Documents de travail de la délégation biométrie et mathématiques appliquées, 3-97) Séminaire biométrie, Montpellier, France, 8 September 1997/10 September 1997.

Vers une représentation formelle des plantes. Rey Hervé, Godin Christophe, Guédon Yann. 1997. In : Modélisation et simulation de l'architecture des végétaux. Bouchon Jean (ed.), De Reffye Philippe (ed.), Barthélémy Daniel (ed.). INRA, CIRAD-GERDAT-AMAP. Paris : INRA, pp. 139-171. (Science update) ISBN 2-7380-0706-6 Colloque sur l'architecture des arbres fruitiers et forestiers, Montpellier, France, 23 November 1993/25 November 1993.

Analyse de données par des processus stochastiques à temps discret et à espace d'états discret dans le logiciel AMAPMOD. Guédon Yann. 1996. In : Recueil des résumés des communications des XXVIIIe journées de statistique. Université Laval. Québec : Université Laval, pp. 393-397. Journées de Statistiques. 28, Québec, Canada, 27 May 1996/30 May 1996.

Conception d'une méthodologie d'analyse des plantes à échelle macroscopique. Godin Christophe, Guédon Yann. 1996. In : Tendances nouvelles en modélisation pour l'environnement : actes des Journées du programme environnement, vie et sociétés, Paris, 15-17 janvier 1996. CNRS. Paris : CNRS, pp. 17-22. Journées du programme environnement, vie et sociétés, Paris, France, 15 January 1996/17 January 1996.

Modelling the annual shoot structure of the apricot tree (CV Lambertin) in terms of axillary flowering and vegetative growth. Costes Evelyne, Guédon Yann. 1996. In : IV International Symposium on Computer Modelling in Fruit Research and Orchard Management, Avignon, France. ISHS ; ed. by R. Habib, PH. Blaise. Wageningen : ISHS, pp. 21-29. (Acta Horticulturae, 0567-7572, 416) ISBN 978-90-66057-78-4

Modélisation de la structure résultant de la succession d'entités botaniques dans les plantes. Guédon Yann. 1995. In : L'arbre : résumés = The tree : Abstracts. CNRS. Talence : CNRS, Résumé, p. 20. Colloque international sur l'arbre. 3, Montpellier, France, 11 September 1995/16 September 1995.

La plastochrone apparent : estimation de sa distribution et évolution au cours de la croissance. Guédon Yann, Costes Evelyne. 1993. In : Le rythme de croissance, base de l'organisation temporelle de l'arbre. GEA. Montpellier : GEA, pp. 137-142. Le rythme de croissance, base de l'organisation temporelle de l'arbre, Angers, France, 25 March 1993/26 March 1993.

Modelling growth of peach trees using the renewal theory. Costes Evelyne, Lauri Pierre-Eric, Guédon Yann, De Reffye Philippe. 1993. In : V International Symposium on Orchard and Plantation Systems, Tel Aviv, Israel. ISHS ; ed. by A. Erez, J.E. Jackson. Wageningen : ISHS, pp. 253-258. (Acta Horticulturae, 0567-7572, 313) ISBN 978-90-66050-16-7

Modelling of apricot flowers and fruits distribution in relation to shoot organization and tree architecture. Costes Evelyne, Guédon Yann, Jay M., Audubert A., Lichou J.. 1993. In : International symposium of apricot culture = [Symposium international sur la culture d'abricotiers]. Ege University. Izmir : Ege University, pp. 291-295. International Symposium on Apricot Culture. 10, Izmir, Turquie, 20 September 1993/24 September 1993.

Stochastic modelling of plant growth : application to the renewal theory. Costes Evelyne, Guédon Yann, Lichou J., De Reffye Philippe. 1993. In : Rythmes biologiques : de la cellule à l'homme. Beau J. (ed.), Vibert J.F. (ed.). Paris : Polytechnica, pp. 41-46. Congrès GERB 92, Paris, France, 25 May 1992/26 May 1992.

Stochastic modelling of apricot growth units and branching. Costes Evelyne, De Reffye Philippe, Lichou J., Guédon Yann, Audubert A., Jay M.. 1992. In : III International Symposium on Computer Modelling in Fruit Research and Orchard Management, Palmerston North, New Zealand. ISHS ; ed. by J.G. Buwalda, T.A. Atkins. Wageningen : ISHS, pp. 89-98. (Acta Horticulturae, 0567-7572, 313) ISBN 978-90-66052-15-4 International Symposium on Modelling in Fruit Research. 3, Palmerston North, Nouvelle-Zélande, February 1992.

Accreditation to supervise theses

Méthodes et modèles statistiques pour l'analyse de la croissance et de la structure des plantes. Guédon Yann. 2005. Montpellier : UM2, 174 p. Habilitation à diriger des recherches : Biostatistique : Université Montpellier 2

Technical and research document

A new specification of generalized linear models for categorical data. Peyhardi Jean, Trottier Catherine, Guédon Yann. 2014. s.l. : s.n., 32 p.
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Localizing the latent structure canonical uncertainty: Entropy profiles for hidden Markov models. Durand Jean-Baptiste, Guédon Yann. 2007. Le Chesnay : INRIA, 40 p. (Rapport de recherche : INRIA. Thème BIO, 7896)
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Analyzing nonstationary discrete sequences using hidden semi-Markov chains. Guédon Yann. 1998. Montpellier : CIRAD-AMIS, 54 p. (Documents de travail du programme modélisation des plantes, n. 5)

Mission report

Modélisation de l'architecture et du mode de floraison des bouts pendants de la vanille (Vanilla planifolia) à l'Ile de la Réunion, décembre 1991. Barthélémy Daniel, Blaise Frédéric, Guédon Yann, De Reffye Philippe. 1991. s.l. : CIRAD, 19 p.
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This list was generated on Sun Sep 20 10:03:07 2020 CEST.