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Number of items: 28.

Journal article

Benchmarking database systems for Genomic Selection implementation. Nti-Addae Yaw, Matthews Dave, Ulat Victor Jun, Syed Raza, Sempere Guilhem, Petel Adrien, Renner Jon, Larmande Pierre, Guignon Valentin, Jones Elizabeth, Robbins Kelly. 2019. Database, 2019:baz096, 10 p.
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BrAPI—an application programming interface for plant breeding applications. Selby Peter, Abbeloos Rafael, Backlund Jan Erik, Basterrechea Salido Martin, Bauchet Guillaume, Benites-Alfaro Omar E., Birkett Clay, Calaminos Viana C., Carceller Pierre, Cornut Guillaume, Vasques Costa Bruno, Edwards Jeremy D., Finkers Richard, Yanxin Gao Star, Ghaffar Mehmood, Glaser Philip, Guignon Valentin, Hok Puthick, Kilian Andrzej, König Patrick, Lagare Jack Elendil B., Lange Matthias, Laporte Marie-Angélique, Larmande Pierre, LeBauer David S., Lyon David A., Marshall David S., Matthews Dave, Milne Iain, Mistry Naymesh, Morales Nicolas, Mueller Lukas, Neveu Pascal, Papoutsoglou Evangelia, Pearce Brian, Perez-Masias Ivan, Pommier Cyril, Ramírez-González Ricardo H., Rathore Abhishek, Raquel Angel Manica, Raubach Sebastian, Rife Trevor, Robbins Kelly, Rouard Mathieu, Sarma Chaitanya, Scholz Uwe, Sempere Guilhem, et al.. 2019. Bioinformatics, 35 (20) : pp. 4147-4155.
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Gigwa v2—Extended and improved genotype investigator. Sempere Guilhem, Petel Adrien, Rouard Mathieu, Frouin Julien, Hueber Yann, De Bellis Fabien, Larmande Pierre. 2019. GigaScience, 8 (5), 9 p.
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The composition and abundance of bacterial communities residing in the gut of Glossina palpalis palpalis captured in two sites of southern Cameroon. Tsagmo Ngoune Jean Marc, Reveillaud Julie, Sempere Guilhem, Njiokou Flobert, Melachio Trésor T., Abate Luc, Tchioffo Majoline T., Geiger Anne. 2019. Parasites and Vectors, 12:151, 15 p.
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A genomic map of climate adaptation in Mediterranean cattle breeds. Flori Laurence, Moazami Goudarzi Katayoun, Alary Véronique, Araba Abdelillah, Boujenane Ismail, Boushaba Nadjet, Casabianca François, Casu Sara, Ciampolini Roberta, Coeur d'Acier Armelle, Coquelle Corinne, Delgado Juan-Vicente, El Beltagy Ahmed, Hadjipavlou Georgia, Jousselin Emmanuelle, Landi Vincenzo, Lauvie Anne, Lecomte Philippe, Ligda Christina, Marinthe Caroline, Martinez Amparo, Mastrangelo Salvatore, Menni Dalal, Moulin Charles-Henri, Osman Mona-Abdelzaher, Pineau Olivier, Portolano Baldassare, Rodellar Clementina, Saïdi-Mehtar Nadhira, Sechi Tiziana, Sempere Guilhem, Thevenon Sophie, Tsiokos Dimitrios, Laloë Denis, Gautier Mathieu. 2019. Molecular Ecology, 28 (5) : pp. 1009-1029.
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MGIS: Managing banana (Musa spp.) genetic resources information and high-throughput genotyping data. Ruas Max, Guignon Valentin, Sempere Guilhem, Sardos Julie, Hueber Yann, Duvergey H., Andrieu A., Chase Rachel, Jenny Christophe, Hazekamp T., Irish B., Jelali K., Adeka J., Ayala-Silva T., Chao C.P., Daniells J., Dowiya B., Effa Effa B., Gueco L., Herradura L., Ibobondji L., Kempenaers E., Kilangi J., Muhangi S., Ngo Xuan P., Paofa J., Pavis Claude, Thiemele D., Tossou Christophe, Sandoval J.A., Sutanto A., Vangu Paka G., Yi G., Van Den Houwe Ines, Roux Nicolas, Rouard Mathieu. 2017. Database, 2017:bax046, 12 p.
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Gigwa—Genotype investigator for genome-wide analyses. Sempere Guilhem, Philippe Florian, Dereeper Alexis, Ruiz Manuel, Sarah Gautier, Larmande Pierre. 2016. GigaScience, 5 (25), 9 p.
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The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Guignon Valentin, Hueber Yann, Rouard Mathieu, Bocs Stéphanie, Couvin David, De Lamotte Frédéric, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Gkanogiannis Anestis, Hamelin Chantal, Larivière Delphine, Martin Guillaume, Ortega Enrique, Pitollat Bertrand, Pointet Stéphanie, Ruiz Manuel, Gautier Sarah, Summo Marilyne, This Dominique, Ravel Sébastien, Larmande Pierre, Monat Cécile, Sabot François, Tando Ndomassi, Tranchant-Dubreuil Christine, Sempere Guilhem, Dereeper Alexis. 2016. Current Plant Biology, 7-8 : pp. 6-9.
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SNiPlay3: A web-based application for exploration and large scale analyses of genomic variations. Dereeper Alexis, Homa Félix, Andres Gwendoline, Sempere Guilhem, Sarah Gautier, Hueber Yann, Dufayard Jean François, Ruiz Manuel. 2015. Nucleic Acids Research, 43 (W1) : W295-W300.
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WIDDE: a Web-Interfaced next generation database for genetic diversity exploration, with a first application in cattle. Sempere Guilhem, Moazami-Goudarzi Katayoun, Eggen André, Laloë Denis, Gautier Mathieu, Flori Laurence. 2015. BMC Genomics, 16 (940), 8 p.
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TropGeneDB, the multi-tropical crop information system updated and extended. Hamelin Chantal, Sempere Guilhem, Jouffe Vincent, Ruiz Manuel. 2013. Nucleic Acids Research, 41 (D1), D1172-D1175
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Book chapter

Using TropGeneDB: a database containing data on molecular markers, QTLs, maps, genotypes, and phenotypes for tropical crops. Ruiz Manuel, Sempere Guilhem, Hamelin Chantal. 2017. In : Plant genomics databases: methods and protocols. Van Dijk Aalt D.J. (ed.). New York : Springer [Etats-Unis], pp. 161-172. (Methods in Molecular Biology, 1533) ISBN 978-1-4939-6656-1
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Guest paper

The South Green Bioinformatics platform, a comprehensive resource for crop genomics. Ruiz Manuel, Dereeper Alexis, Droc Gaëtan, Sarah Gautier, Tranchant-Dubreuil Christine, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, De Lamotte Frédéric, Larmande Pierre, Sabot François, Sempere Guilhem, Summo Marilyne, Pitollat Bertrand, This Dominique, Bocs Stéphanie, Hueber Yann, El Hassouni Nordine, Martin Guillaume, Gkanogiannis Anestis, Ravel Sébastien, Monat Cécile, Tando Ndomassi, Rouard Mathieu. 2017. In : Proceedings X-Meeting 2017. s.l. : s.n., 1 p. International Conference of the AB3. 13, São Pedro, Brésil, 4 October 2017/6 October 2017.
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Paper with proceedings

Combining ex situ and in situ data in the Musa Germplasm Information System (MGIS). Ruas Max, Guignon Valentin, Jenny Christophe, Chase Rachel, Sardos Julie, Sempere Guilhem, Carpentier Sébastien Christian, Dulloo Mohammad Ehsan, Van Den Houwe Ines, Roux Nicolas, Rouard Mathieu. 2019. In : Dedicated to the origins of agriculture and the domestication, evolution and utilization of genetic resources. Abstracts book. IRD, Bioversity International, Agropolis International, CIRAD, Montpellier SupAgro, Université de Montpellier, INRA. Montpellier : IRD, Résumé, p. 117. Jack R. Harlan International Symposium. 3, Montpellier, France, 3 June 2019/7 June 2019.
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South Green, une plateforme de bioinformatique tournée vers l'agriculture dans les pays du sud. Ravel Sébastien, Bocs Stéphanie, Brousseau Louise, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, Larmande Pierre, Mahé Frédéric, Martin Guillaume, Orjuela-Bouniol Julie, Pitollat Bertrand, Rouard Mathieu, Ruiz Manuel, Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, Tando Ndomassi, Tranchant-Dubreuil Christine. 2018. In : JOBIM 2018 Abstracts. SFBI, GdR BiM, IFB, AMU, INSERM, CNRS. Marseille : SFBI, pp. 418-420. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2018), Marseille, 3 July 2018/6 July 2018.
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Gigwa - Genotype Investigator for Genome-Wide Analyses. [P0442]. Ruiz Manuel, Sempere Guilhem, Petel Adrien, Dereeper Alexis, Gautier Sarah, Larmande Pierre. 2017. In : Proceedings Plant and Animal Genome XXV Conference. San Diego : PAG, 1 p. Plant and Animal Genome Conference. 25, San Diego, États-Unis, 14 January 2017/18 January 2017.
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South Green bioinformatics platform: Update 2015. Armero A., Baurens Franc-Christophe, Bocs Stéphanie, Breil A., De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Garsmeur Olivier, Guignon Valentin, Hamelin Chantal, Hueber Yann, Kougbeadjo Ayite, Larivière Delphine, Larmande Pierre, Lorenzo Jonathan, Martin Guillaume, Monat Cécile, Ndomassi T., Ortega Abboud Enrique, Pitollat Bertrand, Ravel Sébastien, Ranwez Vincent, Rouard Mathieu, Ruiz E., Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, This Dominique, Tranchant-Dubreuil Christine, Vallier Félix. 2015. In : Plant Genomics Congress. Global Engage. Londres : Global Engage, p. 51. Plant Genomics Congress. 3, Londres, Royaume-Uni, 11 May 2015/12 May 2015.
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Poster

South Green bioinformatic resources for tropical and Mediterranean crops. Rouard Mathieu, Bocs Stéphanie, Breton Catherine, Comte Aurore, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, Larmande Pierre, Lopez David, Mahe Frédéric, Martin Guillaume, Orjuela-Bouniol Julie, Pitollat Bertrand, Ravel Sébastien, Ruiz Manuel, Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, Tando Ndomassi, Tranchant-Dubreuil Christine. 2020. . SFBI, IFB, GDR-BIM. Montpellier : SFBI, 1 p. Journées ouvertes de biologie, informatique et mathématique (JOBIM 2020). 20, Montpellier, France, 30 June 2020/3 July 2020.
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Development of MetaXplor: a viral metagenomics database. P29. Filloux Denis, Petel Adrien, Sempere Guilhem, Claverie Sohini, Lefeuvre Pierre, Mahe Frédéric, Roumagnac Philippe. 2018. In : Book of abstract Pathobiome 2018. INRA. Ajaccio : INRA, Résumé, p. 50. Pathobiome, Ajaccio, France, 18 March 2018/20 March 2018.
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Development of bioinformatics tools for sequence data mining and virus discovery. [P40]. Filloux Denis, Petel Adrien, Sempere Guilhem, Claverie Sohini, Lefeuvre Pierre, Mahe Frédéric, Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, p. 101. Rencontres de virologie végétale, Aussois, France, 15 January 2017/19 January 2017.
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Genotype investigator for Genome Wide Analysis (GIGwA) [P1111]. Larmande Pierre, Sempere Guilhem, Philippe Florian, Dereeper Alexis, Ruiz Manuel, Sarah Gautier. 2015. In : Plant and Animal Genomes Conference XXIII Conference, San diego, United States, San Diego, United States, January 10-14, 2015. s.l. : s.n., Résumé Plant and Animal Genome Conference. 23, San Diego, États-Unis, 10 January 2015/14 January 2015.
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The Musa Germplasm Information System enhances knowledge of banana diversity. Ruas Max, Channelière Stéphanie, Sempere Guilhem, Ruiz Manuel, Arnaud Elizabeth, Van Den Houwe Ines, Horry Jean-Pierre, Roux Nicolas. 2009. In : Proceedings of TDWG 2009 Annual Conference, Montpellier, France, 9-13 november 2009. ed. by Anna L. Weitzman. Montpellier : Biodiversity Information Standards (TDWG), Résumé, 1 p. TDWG 2009 Annual Conference, Montpellier, France, 9 November 2009/13 November 2009.
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Paper without proceedings

South Green resources to manage Rice Big Genomics Data [W682]. Agret Clément, Gottin Celine, Dereeper Alexis, Tranchant-Dubreuil Christine, Chateau Annie, Diévart Anne, Sarah Gautier, Mancheron Alban, Sempere Guilhem, Ruiz Manuel, Droc Gaëtan. 2020. In : Abstracts workshops of the PAG XXVIII. San Diego : PAG, Résumé, p. 302. Plant and Animal Genome. 28, San Diego, États-Unis, 11 January 2020/15 January 2020.
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Gigwa - Genotype Investigator for Genome-Wide Analyses. Sempere Guilhem, Petel Adrien, Dereeper Alexis, Ruiz Manuel, Larmande Pierre. 2018. In : JOBIM 2018 Abstracts. SFBI, GdR BiM, IFB, AMU, INSERM, CNRS. Marseille : SFBI, Résumé, pp. 251-252. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2018), Marseille, 3 July 2018/6 July 2018.
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Enabling knowledge management in the agronomic domain. W448. Larmande Pierre, Venkatesan Aravind, Ruiz Manuel, Sempere Guilhem, Valduriez Patrick. 2015. . San Diego : s.n., Résumé, 1 p. Plant and Animal Genome Conference. 23, San Diego, États-Unis, 10 January 2015/14 January 2015.
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The south green bioinformatics platform : [P988]. Rouard Mathieu, Dereeper Alexis, Droc Gaëtan, Sarah Gautier, Dufayard Jean-François, Guignon Valentin, Hamelin Chantal, Homa Félix, De Lamotte Frédéric, Larmande Pierre, Larivière Delphine, Sabot François, Sempere Guilhem, Summo Marilyne, Pitollat Bertrand, Pointet Stéphanie, This Dominique, Bocs Stéphanie, Ruiz Manuel. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 January 2014/15 January 2014.
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Role of Galaxy in a bioinformatic plant breeding platform. Maillol Vincent, Bacilieri Roberto, Bocs Stéphanie, Boursiquot Jean-Michel, Carrier Gregory, Dereeper Alexis, Droc Gaëtan, Fleury Cécile, Larmande Pierre, Le Cunff Loïc, Péros Jean-Pierre, Pitollat Bertrand, Ruiz Manuel, Sarah Gautier, Sempere Guilhem, Summo Marilyne, This Patrice, Dufayard Jean-François. 2012. In : Galaxy Community Conference GCC2012, Chicago, Etats-Unis, July 25-27 2012. s.l. : s.n., Résumé, 1 p. Galaxy Community Conference, Chicago, États-Unis, 25 July 2012/27 July 2012.
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GreenPhyl : Phylogenomic resources for comparative and functional genomics. Conte Matthieu, Perin Christophe, Laporte Marie-Angélique, Droc Gaëtan, Aluome Christelle, Guignon Valentin, Lanau Nadège, Sempere Guilhem, Rouard Mathieu. 2010. In : Final program and abstracts of the 2nd International Symposium on Genomics of Plant Genetic Resources, Bologna, Italy, 24-27 April 2010. Rome : Bioversity International, Résumé, p. 103. International Symposium on Genomics of Plant Genetic Resources. 2, Bologne, Italie, 24 April 2010/27 April 2010.
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This list was generated on Sun Nov 29 10:42:51 2020 CET.