Parcourir par Auteur Cirad

Whole blood transcriptome profiles of trypanotolerant and trypanosusceptible cattle highlight a differential modulation of metabolism and immune response during infection by Trypanosoma congolense. Peylhard Moana, Berthier David, Dayo Guiguigbaza-Kossigan, Chantal Isabelle, Sylla Souleymane, Nidelet Sabine, Dubois Emeric, Martin Guillaume, Sempere Guilhem, Flori Laurence, Thevenon Sophie. 2023. Peer Community Journal, 3:e17, 33 p.

The Banana Genome Hub: A community database for genomics in the Musaceae. Droc Gaëtan, Martin Guillaume, Guignon Valentin, Summo Marilyne, Sempere Guilhem, Durant Eloi, Soriano Alexandre, Baurens Franc-Christophe, Cenci Alberto, Breton Catherine, Shah Trushar, Aury Jean-Marc, Ge Xue-Jun, Harrison Pat Heslop, Yahiaoui Nabila, D'Hont Angélique, Rouard Mathieu. 2022. Horticulture Research, 9:uhac221, 10 p.

A digital catalog of high-density markers for banana germplasm collections. Rouard Mathieu, Sardos Julie, Sempere Guilhem, Breton Catherine, Guignon Valentin, Van Den Houwe Ines, Carpentier Sébastien Christian, Roux Nicolas. 2022. Plants, People, Planet, 4 (1), n.spéc. Access and benefit sharing of biodiversity data : 61-67.

Bacteriome diversity of blackflies' gut and association with Onchocerca volvulus, the causative agent of onchocerciasis in Mbam Valley (Center Region, Cameroon). Efon Ekangouo Arnauld, Nana Djeunga Hugues C., Sempere Guilhem, Kamgno Joseph, Njiokou Flobert, Moundipa Fewou Paul, Geiger Anne. 2021. Pathogens, 11 (1):44, 17 p.

Modulation of trypanosome establishment in Glossina palpalis palpalis by its microbiome in the Campo sleeping sickness focus, Cameroon. Ngambia Freitas François Sougal, Njiokou Flobert, Tsagmo Ngoune Jean Marc, Sempere Guilhem, Berthier David, Geiger Anne. 2021. Infection, Genetics and Evolution, 90:104763, 11 p.

metaXplor: An interactive viral and microbial metagenomic data manager. Sempere Guilhem, Petel Adrien, Abbé Magsen, Lefeuvre Pierre, Roumagnac Philippe, Mahé Frédéric, Baurens Gaël, Filloux Denis. 2021. GigaScience, 10 (2):giab001 : 1-8.

Benchmarking database systems for Genomic Selection implementation. Nti-Addae Yaw, Matthews Dave, Ulat Victor Jun, Syed Raza, Sempere Guilhem, Petel Adrien, Renner Jon, Larmande Pierre, Guignon Valentin, Jones Elizabeth, Robbins Kelly. 2019. Database, 2019:baz096, 10 p.

BrAPI—an application programming interface for plant breeding applications. Selby Peter, Abbeloos Rafael, Backlund Jan Erik, Basterrechea Salido Martin, Bauchet Guillaume, Benites-Alfaro Omar E., Birkett Clay, Calaminos Viana C., Carceller Pierre, Cornut Guillaume, Vasques Costa Bruno, Edwards Jeremy D., Finkers Richard, Yanxin Gao Star, Ghaffar Mehmood, Glaser Philip, Guignon Valentin, Hok Puthick, Kilian Andrzej, König Patrick, Lagare Jack Elendil B., Lange Matthias, Laporte Marie-Angélique, Larmande Pierre, LeBauer David S., Lyon David A., Marshall David S., Matthews Dave, Milne Iain, Mistry Naymesh, Morales Nicolas, Mueller Lukas, Neveu Pascal, Papoutsoglou Evangelia, Pearce Brian, Perez-Masias Ivan, Pommier Cyril, Ramírez-González Ricardo H., Rathore Abhishek, Raquel Angel Manica, Raubach Sebastian, Rife Trevor, Robbins Kelly, Rouard Mathieu, Sarma Chaitanya, Scholz Uwe, Sempere Guilhem, et al.. 2019. Bioinformatics, 35 (20) : 4147-4155.

Gigwa v2—Extended and improved genotype investigator. Sempere Guilhem, Petel Adrien, Rouard Mathieu, Frouin Julien, Hueber Yann, De Bellis Fabien, Larmande Pierre. 2019. GigaScience, 8 (5), 9 p.

The composition and abundance of bacterial communities residing in the gut of Glossina palpalis palpalis captured in two sites of southern Cameroon. Tsagmo Ngoune Jean Marc, Reveillaud Julie, Sempere Guilhem, Njiokou Flobert, Melachio Trésor T., Abate Luc, Tchioffo Majoline T., Geiger Anne. 2019. Parasites and Vectors, 12:151, 15 p.

A genomic map of climate adaptation in Mediterranean cattle breeds. Flori Laurence, Moazami Goudarzi Katayoun, Alary Véronique, Araba Abdelillah, Boujenane Ismail, Boushaba Nadjet, Casabianca François, Casu Sara, Ciampolini Roberta, Coeur d'Acier Armelle, Coquelle Corinne, Delgado Juan-Vicente, El Beltagy Ahmed, Hadjipavlou Georgia, Jousselin Emmanuelle, Landi Vincenzo, Lauvie Anne, Lecomte Philippe, Ligda Christina, Marinthe Caroline, Martinez Amparo, Mastrangelo Salvatore, Menni Dalal, Moulin Charles-Henri, Osman Mona-Abdelzaher, Pineau Olivier, Portolano Baldassare, Rodellar Clementina, Saïdi-Mehtar Nadhira, Sechi Tiziana, Sempere Guilhem, Thevenon Sophie, Tsiokos Dimitrios, Laloë Denis, Gautier Mathieu. 2019. Molecular Ecology, 28 (5) : 1009-1029.

MGIS: Managing banana (Musa spp.) genetic resources information and high-throughput genotyping data. Ruas Max, Guignon Valentin, Sempere Guilhem, Sardos Julie, Hueber Yann, Duvergey H., Andrieu A., Chase Rachel, Jenny Christophe, Hazekamp T., Irish B., Jelali K., Adeka J., Ayala-Silva T., Chao C.P., Daniells J., Dowiya B., Effa Effa B., Gueco L., Herradura L., Ibobondji L., Kempenaers E., Kilangi J., Muhangi S., Ngo Xuan P., Paofa Janet, Pavis Claude, Thiemele D., Tossou Christophe, Sandoval Jorge A., Sutanto A., Vangu Paka G., Yi G., Van Den Houwe Ines, Roux Nicolas, Rouard Mathieu. 2017. Database, 2017:bax046, 12 p.

Gigwa—Genotype investigator for genome-wide analyses. Sempere Guilhem, Philippe Florian, Dereeper Alexis, Ruiz Manuel, Sarah Gautier, Larmande Pierre. 2016. GigaScience, 5 (25), 9 p.

The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Guignon Valentin, Hueber Yann, Rouard Mathieu, Bocs Stéphanie, Couvin David, De Lamotte Frédéric, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Gkanogiannis Anestis, Hamelin Chantal, Larivière Delphine, Martin Guillaume, Ortega Enrique, Pitollat Bertrand, Pointet Stéphanie, Ruiz Manuel, Gautier Sarah, Summo Marilyne, This Dominique, Ravel Sébastien, Larmande Pierre, Monat Cécile, Sabot François, Tando Ndomassi, Tranchant-Dubreuil Christine, Sempere Guilhem, Dereeper Alexis. 2016. Current Plant Biology, 7-8 : 6-9.

SNiPlay3: A web-based application for exploration and large scale analyses of genomic variations. Dereeper Alexis, Homa Félix, Andres Gwendoline, Sempere Guilhem, Sarah Gautier, Hueber Yann, Dufayard Jean François, Ruiz Manuel. 2015. Nucleic Acids Research, 43 (W1) : W295-W300.

WIDDE: a Web-Interfaced next generation database for genetic diversity exploration, with a first application in cattle. Sempere Guilhem, Moazami-Goudarzi Katayoun, Eggen André, Laloë Denis, Gautier Mathieu, Flori Laurence. 2015. BMC Genomics, 16 (940), 8 p.

TropGeneDB, the multi-tropical crop information system updated and extended. Hamelin Chantal, Sempere Guilhem, Jouffe Vincent, Ruiz Manuel. 2013. Nucleic Acids Research, 41 (D1), D1172-D1175

Managing high-density genotyping data with Gigwa. Sempere Guilhem, Larmande Pierre, Rouard Mathieu. 2022. In : Plant Bioinformatics: methods and protocols. Edwards David (ed.). Cham : Springer-Humana Press, 415-427. (Methods in Molecular Biology, 2443, 2443) ISBN 978-1-0716-2066-3

Using TropGeneDB: a database containing data on molecular markers, QTLs, maps, genotypes, and phenotypes for tropical crops. Ruiz Manuel, Sempere Guilhem, Hamelin Chantal. 2017. In : Plant genomics databases: methods and protocols. Van Dijk Aalt D.J. (ed.). New York : Springer [Etats-Unis], 161-172. (Methods in Molecular Biology, 1533) ISBN 978-1-4939-6656-1

Managing and exploring large genotyping data with Gigwa. Sempere Guilhem, Petel Adrien, Rouard Mathieu, Larmande Pierre, Hueber Yann, Frouin Julien, De Bellis Fabien. 2019. . PAG. San Diego : PAG, Résumé, 2 p. Plant and Animal Genome Conference (PAG). 27, San Diego, États-Unis, 12 Janvier 2019/16 Janvier 2019.

The South Green Bioinformatics platform, a comprehensive resource for crop genomics. Ruiz Manuel, Dereeper Alexis, Droc Gaëtan, Sarah Gautier, Tranchant-Dubreuil Christine, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, De Lamotte Frédéric, Larmande Pierre, Sabot François, Sempere Guilhem, Summo Marilyne, Pitollat Bertrand, This Dominique, Bocs Stéphanie, Hueber Yann, El Hassouni Nordine, Martin Guillaume, Gkanogiannis Anestis, Ravel Sébastien, Monat Cécile, Tando Ndomassi, Rouard Mathieu. 2017. In : Proceedings X-Meeting 2017. s.l. : s.n., 1 p. International Conference of the AB3. 13, São Pedro, Brésil, 4 Octobre 2017/6 Octobre 2017.

Mapping race differentiation along the cultivated sorghum genome. Mendy Jovanie, Beye Abdoulaye, Frouin Julien, De Bellis Fabien, Burgarella Concetta, Pot David, Sempere Guilhem, Billot Claire, Leclerc Christian, Rami Jean-François, Deu Monique, Gilabert Aude, Glaszmann Jean-Christophe. 2023. In : Sorghum in the 21st century: Resiliency and sustainability in the face of climate change. Book of abstracts. CIRAD, Kansas State University, Collaborative Research on Sorghum and Millet, SorghumID, IRD, CERAAS. Montpellier : CIRAD-Kansas State University, Résumé, p. 250. Sorghum in the 21st Century, Global Sorghum Conference, Montpellier, France, 5 Juin 2023/9 Juin 2023.

Combining ex situ and in situ data in the Musa Germplasm Information System (MGIS). Ruas Max, Guignon Valentin, Jenny Christophe, Chase Rachel, Sardos Julie, Sempere Guilhem, Carpentier Sébastien Christian, Dulloo Mohammad Ehsan, Van Den Houwe Ines, Roux Nicolas, Rouard Mathieu. 2019. In : Dedicated to the origins of agriculture and the domestication, evolution and utilization of genetic resources. Abstracts book. IRD, Bioversity International, Agropolis International, CIRAD, Montpellier SupAgro, Université de Montpellier, INRA. Montpellier : IRD, Résumé, p. 117. Jack R. Harlan International Symposium. 3, Montpellier, France, 3 Juin 2019/7 Juin 2019.

South Green, une plateforme de bioinformatique tournée vers l'agriculture dans les pays du sud. Ravel Sébastien, Bocs Stéphanie, Brousseau Louise, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, Larmande Pierre, Mahé Frédéric, Martin Guillaume, Orjuela-Bouniol Julie, Pitollat Bertrand, Rouard Mathieu, Ruiz Manuel, Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, Tando Ndomassi, Tranchant-Dubreuil Christine. 2018. In : JOBIM 2018 Abstracts. SFBI, GdR BiM, IFB, AMU, INSERM, CNRS. Marseille : SFBI, 418-420. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2018), Marseille, 3 Juillet 2018/6 Juillet 2018.

Gigwa - Genotype Investigator for Genome-Wide Analyses. [P0442]. Ruiz Manuel, Sempere Guilhem, Petel Adrien, Dereeper Alexis, Gautier Sarah, Larmande Pierre. 2017. In : Proceedings Plant and Animal Genome XXV Conference. San Diego : PAG, 1 p. Plant and Animal Genome Conference. 25, San Diego, États-Unis, 14 Janvier 2017/18 Janvier 2017.

South Green bioinformatics platform: Update 2015. Armero A., Baurens Franc-Christophe, Bocs Stéphanie, Breil A., De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Garsmeur Olivier, Guignon Valentin, Hamelin Chantal, Hueber Yann, Kougbeadjo Ayite, Larivière Delphine, Larmande Pierre, Lorenzo Jonathan, Martin Guillaume, Monat Cécile, Ndomassi T., Ortega Abboud Enrique, Pitollat Bertrand, Ravel Sébastien, Ranwez Vincent, Rouard Mathieu, Ruiz E., Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, This Dominique, Tranchant-Dubreuil Christine, Vallier Félix. 2015. In : Plant Genomics Congress. Global Engage. Londres : Global Engage, 51. Plant Genomics Congress. 3, Londres, Royaume-Uni, 11 Mai 2015/12 Mai 2015.

South Green bioinformatic resources for tropical and Mediterranean crops. Rouard Mathieu, Bocs Stéphanie, Breton Catherine, Comte Aurore, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, Larmande Pierre, Lopez David, Mahé Frédéric, Martin Guillaume, Orjuela-Bouniol Julie, Pitollat Bertrand, Ravel Sébastien, Ruiz Manuel, Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, Tando Ndomassi, Tranchant-Dubreuil Christine. 2020. . SFBI, IFB, GDR-BIM. Montpellier : SFBI, 1 p. Journées ouvertes de biologie, informatique et mathématique (JOBIM 2020). 20, Montpellier, France, 30 Juin 2020/3 Juillet 2020.

Development of MetaXplor: a viral metagenomics database. P29. Filloux Denis, Petel Adrien, Sempere Guilhem, Claverie Sohini, Lefeuvre Pierre, Mahe Frédéric, Roumagnac Philippe. 2018. In : Book of abstract Pathobiome 2018. INRA. Ajaccio : INRA, Résumé, 50. Pathobiome, Ajaccio, France, 18 Mars 2018/20 Mars 2018.

Development of bioinformatics tools for sequence data mining and virus discovery. [P40]. Filloux Denis, Petel Adrien, Sempere Guilhem, Claverie Sohini, Lefeuvre Pierre, Mahe Frédéric, Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, 101. Rencontres de virologie végétale, Aussois, France, 15 Janvier 2017/19 Janvier 2017.

Genotype investigator for Genome Wide Analysis (GIGwA) [P1111]. Larmande Pierre, Sempere Guilhem, Philippe Florian, Dereeper Alexis, Ruiz Manuel, Sarah Gautier. 2015. In : Plant and Animal Genomes Conference XXIII Conference, San diego, United States, San Diego, United States, January 10-14, 2015. s.l. : s.n., Résumé Plant and Animal Genome Conference. 23, San Diego, États-Unis, 10 Janvier 2015/14 Janvier 2015.

The Musa Germplasm Information System enhances knowledge of banana diversity. Ruas Max, Channelière Stéphanie, Sempere Guilhem, Ruiz Manuel, Arnaud Elizabeth, Van Den Houwe Ines, Horry Jean-Pierre, Roux Nicolas. 2009. In : Proceedings of TDWG 2009 Annual Conference, Montpellier, France, 9-13 november 2009. ed. by Anna L. Weitzman. Montpellier : Biodiversity Information Standards (TDWG), Résumé, 1 p. TDWG 2009 Annual Conference, Montpellier, France, 9 Novembre 2009/13 Novembre 2009.

Study of the biological bases of bovine trypanotolerance through whole blood trancripome profiling of trypanotolerant and trypanosusceptible cattle during infection by Trypanosoma congolense. Thevenon Sophie, Berthier David, Chantal Isabelle, Flori Laurence, Peylhard Moana, Sempere Guilhem, Some Fabrice, Dayo Guiguigbaza-Kossigan. 2023. . CIRAD. Montpellier : CIRAD, Résumé, 1 p. First Annual Montpellier Parasitology Symposium, Montpellier, France, 27 Novembre 2023/28 Novembre 2023.

Dual transcriptome of cattle and Trypanosoma congolense highlights host*parasite interactions and modulation of host genes involved in immuno-metabolism. Thevenon Sophie, Dayo Guiguigbaza-Kossigan, Chantal Isabelle, Peylhard Moana, Sempere Guilhem, Flori Laurence, Minet Cécile, Some Fabrice, Eloiflin Roger-Junior, Berthier David. 2022. . Institut Pasteur. Paris : Institut Pasteur, Résumé, 1 p. Future of Parasitology 2022, Paris, France, 17 Octobre 2022/19 Octobre 2022.

South Green resources to manage Rice Big Genomics Data [W682]. Agret Clément, Gottin Celine, Dereeper Alexis, Tranchant-Dubreuil Christine, Chateau Annie, Diévart Anne, Sarah Gautier, Mancheron Alban, Sempere Guilhem, Ruiz Manuel, Droc Gaëtan. 2020. In : Abstracts workshops of the PAG XXVIII. San Diego : PAG, Résumé, 302. Plant and Animal Genome. 28, San Diego, États-Unis, 11 Janvier 2020/15 Janvier 2020.

GOBii, a scalable genomics data management system with rapid data extract times and integration with downstream genomic selection analysis pipelines. Nti-Addae Yaw, Ulat Victor Jun, Matthews Dave, Sempere Guilhem, Guignon Valentin, Larmande Pierre, Renner Jon, Petel Adrien, Jones Elizabeth, Robbins Kelly. 2019. . PAG. San Diego : PAG, Résumé Plant and Animal Genome Conference (PAG). 27, San Diego, États-Unis, 12 Janvier 2019/16 Janvier 2019.

Gigwa - Genotype Investigator for Genome-Wide Analyses. Sempere Guilhem, Petel Adrien, Dereeper Alexis, Ruiz Manuel, Larmande Pierre. 2018. In : JOBIM 2018 Abstracts. SFBI, GdR BiM, IFB, AMU, INSERM, CNRS. Marseille : SFBI, Résumé, 251-252. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2018), Marseille, 3 Juillet 2018/6 Juillet 2018.

Enabling knowledge management in the agronomic domain. W448. Larmande Pierre, Venkatesan Aravind, Ruiz Manuel, Sempere Guilhem, Valduriez Patrick. 2015. . San Diego : s.n., Résumé, 1 p. Plant and Animal Genome Conference. 23, San Diego, États-Unis, 10 Janvier 2015/14 Janvier 2015.

The south green bioinformatics platform : [P988]. Rouard Mathieu, Dereeper Alexis, Droc Gaëtan, Sarah Gautier, Dufayard Jean-François, Guignon Valentin, Hamelin Chantal, Homa Félix, De Lamotte Frédéric, Larmande Pierre, Larivière Delphine, Sabot François, Sempere Guilhem, Summo Marilyne, Pitollat Bertrand, Pointet Stéphanie, This Dominique, Bocs Stéphanie, Ruiz Manuel. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 Janvier 2014/15 Janvier 2014.

Role of Galaxy in a bioinformatic plant breeding platform. Maillol Vincent, Bacilieri Roberto, Bocs Stéphanie, Boursiquot Jean-Michel, Carrier Gregory, Dereeper Alexis, Droc Gaëtan, Fleury Cécile, Larmande Pierre, Le Cunff Loïc, Péros Jean-Pierre, Pitollat Bertrand, Ruiz Manuel, Sarah Gautier, Sempere Guilhem, Summo Marilyne, This Patrice, Dufayard Jean-François. 2012. In : Galaxy Community Conference GCC2012, Chicago, Etats-Unis, July 25-27 2012. s.l. : s.n., Résumé, 1 p. Galaxy Community Conference, Chicago, États-Unis, 25 Juillet 2012/27 Juillet 2012.

GreenPhyl : Phylogenomic resources for comparative and functional genomics. Conte Matthieu, Perin Christophe, Laporte Marie-Angélique, Droc Gaëtan, Aluome Christelle, Guignon Valentin, Lanau Nadège, Sempere Guilhem, Rouard Mathieu. 2010. In : Final program and abstracts of the 2nd International Symposium on Genomics of Plant Genetic Resources, Bologna, Italy, 24-27 April 2010. Rome : Bioversity International, Résumé, 103. International Symposium on Genomics of Plant Genetic Resources. 2, Bologne, Italie, 24 Avril 2010/27 Avril 2010.