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Number of items: 48.

2019

Evolutionary transcriptomics reveals the origins of olives and the genomic changes associated with their domestication. Gros-Balthazard Muriel, Besnard Guillaume, Sarah Gautier, Holtz Yan, Leclercq Julie, Santoni Sylvain, Wegmann Daniel, Glemin Sylvain, Khadari Bouchaib. 2019. Plant Journal, 100 (1) : pp. 143-157.
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2018

Comparative transcriptome profiling of virulent and attenuated Ehrlichia ruminantium strains highlighted strong regulation of map1- and metabolism related genes. Pruneau Ludovic, Lebrigand Kevin, Mari Bernard, Lefrançois Thierry, Meyer Damien, Vachiéry Nathalie. 2018. Frontiers in Cellular and Infection Microbiology, 8:153, 16 p.
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Integrative analysis of the late maturation programme and desiccation tolerance mechanisms in intermediate coffee seeds. Dussert Stéphane, Serret Julien, Bastos-Siqueira Aldecinei, Morcillo Fabienne, Dechamp Eveline, Rofidal Valérie, Lashermes Philippe, Etienne Hervé, Joët Thierry. 2018. Journal of Experimental Botany, 69 (7) : pp. 1583-1597.
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Iron starvation conditions upregulate Ehrlichia ruminantium type IV secretion system, tr1 transcription factor and map1 genes family through the master regulatory protein ErxR. Moumène Amal, Gonzalez-Rizzo Silvina, Lefrançois Thierry, Vachiéry Nathalie, Meyer Damien. 2018. Frontiers in Cellular and Infection Microbiology, 7:535, 11 p.
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QTL detection for growth and latex production in a full-sib rubber tree population cultivated under suboptimal climate conditions. Rosa João Ricardo Bachega Feijó, Mantello Camilia Campos, Garcia Dominique, de Souza Lívia Moura, Da Silva Carla Cristina, Gazaffi Rodrigo, da Silva Cícero Casimiro, Toledo-Silva Guilherme, Cubry Philippe, Garcia Antonio Augusto Franco, de Souza Anete Pereira, Le Guen Vincent. 2018. BMC Plant Biology, 18:223, 16 p.
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Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants. Varala Kranthi, Marshall-Colón Amy, Cirrone Jacopo, Brooks Matthew D., Pasquino Angelo V., Leran Sophie, Mittal Shipra, Rock Tara M., Edwards Molly B., Kim Grace J., Ruffel Sandrine, McCombie Richard, Shasha Dennis, Coruzzi Gloria M.. 2018. Proceedings of the National Academy of Sciences of the United States of America, 115 (25) : pp. 6494-6499.
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2017

Genome-wide identification and characterization of cacao WRKY transcription factors and analysis of their expression in response to witches' broom disease. Silva Monteiro de Almeida Dayanne, Do Amaral Daniel Oliveira Jordão, Del-Bem Luiz-Eduardo, Bronze dos Santos Emily, Santana Silva Raner José, Peres Gramacho Karina, Vincentz Michel, Micheli Fabienne. 2017. PloS One, 12 (10):e0187346, 23 p.
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Phytophthora megakarya and Phytophthora palmivora, closely related causal agents of cacao black pod rot, underwent increases in genome sizes and gene numbers by different mechanisms. Ali Shahin, Shao Jonathan, Lary David J., Kronmiller Brent A., Shen Danyu, Strem Mary, Amoako-Attah Ishmael, Yaw Akrofi Andrew, Begoude Dider, Ten Hoopen Gerben Martijn, Coulibaly Klotioloma, Kébé Boubacar Ismaël, Melnick Rachel L., Guiltinan Mark J., Tyler Brett, Meinhardt Lyndel W., Bailey Bryan. 2017. Genome Biology and Evolution, 9 (3) : pp. 536-557.
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SHR overexpression induces the formation of supernumerary cell layers with cortex cell identity in rice. Henry Sophia, Dievart Anne, Divol Fanchon, Pauluzzi Germain, Meynard Donaldo, Swarup Ranjan, Wu Shuangyang, Gallagher Kimberly, Périn Christophe. 2017. Developmental Biology, 425 (1) : pp. 1-7.
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Transcriptome analysis of leaves, flowers and fruits perisperm of Coffea arabica L. reveals the differential expression of genes involved in raffinose biosynthesis. Ivamoto Suzana Tiemi, Reis Júnior Osvaldo, Silva Domingues Douglas, Dos Santos Tiago Benedito, Freitas de Oliveira Fernanda, Pot David, Leroy Thierry, Vieira Luiz Gonzaga Esteves, Falsarella Carazzolle Marcelo, Guimarães Pereira Gonçalo Amarante, Protasio Pereira Luiz Filipe. 2017. PloS One, 12 (1):e0169595, 17 p.
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The emerging oilseed crop Sesamum indicum enters the “Omics” era. Dossa Komivi, Diouf Diaga, Wang Linhai, Wei Xin, Zhang Yanxin, Niang Mareme, Fonceka Daniel, Yu Jingyin, Mmadi Marie A., Yehouessi Louis W., Liao Boshou, Zhang Xiurong, Cissé Ndiaga. 2017. Frontiers in Plant Science, 8:1154, 16 p.
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A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives. Sarah Gautier, Homa Félix, Pointet Stéphanie, Contreras Sandy, Sabot François, Nabholz Benoit, Santoni Sylvain, Sauné Laure, Ardisson Morgane, Chantret Nathalie, Sauvage Christopher, Tregear James, Jourda Cyril, Pot David, Vigouroux Yves, Chaïr Hâna, Scarcelli Nora, Billot Claire, Yahiaoui Nabila, Bacilieri Roberto, Khadari Bouchaib, Boccara Michel, Barnaud Adeline, Péros Jean-Pierre, Labouisse Jean-Pierre, Pham Jean Louis, David Jacques, Glemin Sylvain, Ruiz Manuel. 2017. Molecular Ecology Resources, 17 (3) : pp. 565-580.
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2016

Analysis of transcripts differentially expressed between fruited and deflowered 'Gala' adult trees: a contribution to biennial bearing understanding in apple. Guitton Baptiste, Kelner Jean-Jacques, Celton Jean-Marc, Sabau Xavier, Renou Jean-Pierre, Chagné D., Costes Evelyne. 2016. BMC Plant Biology, 16 (55), 22 p.
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Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae. Islam M. Totazzal, Croll Daniel, Gladieux Pierre, Soanes Darren M., Persoons Antoine, Bhattacharjee Pallab, Hossain Md. Shaid, Gupta Dipali Rani, Rahman Md Mahbubur, Mahboob M. Golam, Cook Nicola, Salam Moin U., Surovy Musrat Zahan, Sancho Vanessa Bueno, Maciel João Leodato Nunes, NhaniJúnior Antonio, Castroagudín Vanina Lilián, de Assis Reges Juliana T., Ceresini Paulo Cezar, Ravel Sébastien, Kellner Ronny, Fournier Elisabeth, Tharreau Didier, Lebrun Marc-Henri, McDonald Bruce A., Stitt Timothy, Swan Daniel, Talbot Nicholas J., Saunders Diane G.O., Win Joe, Kamoun Sophien. 2016. BMC Biology, 14 (84), 11 p.
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Gene coexpression network analysis of oil biosynthesis in an interspecific backcross of oil palm. Guérin Chloé, Joët Thierry, Serret Julien, Lashermes Philippe, Vaissayre Virginie, Agbessi Mawussé D.T., Beulé Thierry, Severac Dany, Amblard Philippe, Tregear James, Durand-Gasselin Tristan, Morcillo Fabienne, Dussert Stéphane. 2016. Plant Journal, 87 (5) : pp. 423-441.
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In planta comparative transcriptomics of host-adapted strains of Ralstonia solanacearum. Ailloud Florent, Lowe Tiffany, Robène Isabelle, Cruveiller Stéphane, Allen Caitilyn, Prior Philippe. 2016. PeerJ, 4:e1549, 18 p.
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Prevalence of Sugarcane yellow leaf virus in sugarcane producing regions in Kenya revealed by reverse transcription loop-mediated isothermal amplification method. Amata Ruth Lodenyi, Fernandez Emmanuel, Filloux Denis, Martin Darren Patrick, Rott Philippe, Roumagnac Philippe. 2016. Plant Disease, 100 (2) : pp. 260-268.
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Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungus. Delteil Amandine, Gobbato Enrico, Cayrol Bastien, Estevan Joan, Michel-Romiti Corinne, Dievart Anne, Kroj Thomas, Morel Jean-Benoit. 2016. BMC Plant Biology, 16 (17), 10 p.
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Transcriptome analysis in Coffea eugenioides, an Arabica coffee ancestor, reveals differentially expressed genes in leaves and fruits. Yuyama Priscilla Mary, Reis Júnior Osvaldo, Ivamoto Suzana Tiemi, Domingues Douglas S., Carazzolle Marcelo Falsarella, Pereira Gonçalo Amarante Guimarães, Charmetant Pierre, Leroy Thierry, Pereira Luiz Filipe P.. 2016. Molecular Genetics and Genomics, 291 (1) : pp. 323-336.
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Transcriptome analysis revealed that a quorum sensing system regulates the transfer of the pAt megaplasmid in Agrobacterium tumefaciens. Mhedbi-Hajri Nadia, Yahiaoui Noura, Mondy Samuel, Hue Nathalie, Pelissier Cyril, Faure Denis, Dessaux Y.. 2016. BMC Genomics, 17 (661), 14 p.
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2015

Applying Epigenetics in Plant Breeding: Balancing Genome Stability and Phenotypic Plasticity. Jaligot Estelle, Rival Alain. 2015. In : Advances in Plant Breeding Strategies: Breeding, Biotechnology and Molecular Tools. Al-Khayri Jameel M. (ed.), Jain Shri Mohan (ed.), Johnson Dennis V.(ed.). Cham : Springer International Publishing, pp. 159-192. ISBN 978-3-319-22520-3
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Binding sites of mirnas with transcription factors' genes of Camelus ferus. Alybaeva Aigul, Berillo O., Niyazova R., Faye Bernard, Ivashchenko Anatoly. 2015. Veterinariâ, 42 (2), n.spéc. Silk road camel: The camelids, main stake for sustainable development : pp. 340-342. 4th Conference of the International Society of Camelid Research and Development/ISOCARD 2015. 4, Almaty, Kazakhstan, 8 June 2015/12 June 2015.
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Draft genome sequences of two Xanthomonas euvesicatoria strains from the Balkan Peninsula. Vancheva Taca, Lefeuvre Pierre, Bogatzevska Nevena, Moncheva Penka, Koebnik Ralf. 2015. Genome Announcements, 3 (1):e01528, 2 p.
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Draft genome sequences of two Xanthomonas vesicatoria strains from the Balkan peninsula. Vancheva Taca, Bogatzevska Nevena, Moncheva Penka, Lefeuvre Pierre, Koebnik Ralf. 2015. Genome Announcements, 3 (1):e01558-14, 2 p.
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Ethylene response factors are controlled by multiple harvesting stresses in Hevea brasiliensis. Putranto Riza Arief, Duan Cuifang, Kuswanhadi, Chaidamsari Tetty, Rio Maryannick, Piyatrakul Piyanuch, Herlinawati Eva, Pirrello Julien, Dessailly Florence, Leclercq Julie, Bonnot François, Tang Chaorong, Hu Songnian, Montoro Pascal. 2015. PloS One, 10 (4):e0123618, 26 p.
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Etude de la fonction de deux facteurs de transcription SHORT-ROOT 1 et SHORTROOT 2 dans la mise en place du cortex chez le riz. Henry Sophia. 2015. Montpellier : Université de Montpellier, 273 p. Thèse de doctorat : Biologie intégrative des plantes : Université de Montpellier
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Etude histo-pathologique et moléculaire de la résistance des vanilliers (Vanilla spp., Orchidaceae) à Fusarium oxysporum f.sp. radicis-vanillae, agent de la pourriture des racines et des tiges. Koyyappurath Sayuj. 2015. Saint-Denis : Université de la Réunion, 227 p. Thèse de doctorat : Sciences. Biologie végétale : Université de la Réunion
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Genome-wide analysis of LTR-retrotransposons in oil palm. Beulé Thierry, Agbessi Mawussé, Dussert Stéphane, Jaligot Estelle, Guyot Romain. 2015. BMC Genomics, 16 (795), 14 p.
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Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome. Roux Brice, Bolot Stéphanie, Guy Endrick, Denancé Nicolas, Lautier Martine, Jardinaud Marie-Françoise, Fischer-Le-Caux Marion, Portier Perrine, Jacques Marie Agnès, Gagnevin Lionel, Pruvost Olivier, Lauber Emmanuelle, Arlat Mathieu, Carrère Sébastien, Koebnik Ralf, Noel Laurent D.. 2015. BMC Genomics, 16 (975), 19 p.
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High-Quality Draft Genome Sequence of the Xanthomonas translucens pv. cerealis Pathotype Strain CFBP 2541. Pesce Céline, Bolot Stéphanie, Cunnac Sébastien, Portier Perrine, Fischer-Le-Caux Marion, Jacques Marie Agnès, Gagnevin Lionel, Arlat Mathieu, Noel Laurent D., Carrère Sébastien, Bragard Claude, Koebnik Ralf. 2015. Genome Announcements, 3 (1):e0157414, 2 p.
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Le pouvoir pathogène chez Ralstonia solanacearum phylotype II : génomique intégrative et paysages transcriptomiques en relation avec l'adaptation à l'hôte. Ailloud Florent. 2015. Saint-Denis : Université de la Réunion, 222 p. Thèse de doctorat : Microbiologie. Phytopathologie : Université de la Réunion
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Microsatellite evolutionary rate and pattern in Schistocerca gregaria inferred from direct observation of germline mutations. Chapuis Marie Pierre, Plantamp Christophe, Streiff Réjane, Blondin Laurence, Piou Cyril. 2015. Molecular Ecology, 24 (24) : pp. 6107-6119.
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OsMADS26 negatively regulates resistance to pathogens and drought tolerance in rice. Khong Ngan Giang, Pati Pratap K., Richaud Frédérique, Parizot Boris, Bidzinski Przemyslaw, Mai Chung Duc, Bes Martine, Bourrié Isabelle, Meynard Donaldo, Beeckman Tom, Selvaraj Michael Gomez, Manabu Ishitani, Genga Anna-Maria, Brugidou Christophe, Do Vinh Nang, Guiderdoni Emmanuel, Morel Jean-Benoit, Gantet Pascal. 2015. Plant Physiology, 169 (4) : pp. 2935-2949.
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QueTAL: A suite of tools to classify and compare TAL effectors functionally and phylogenetically. Pérez-Quintero Alvaro L., Lamy Léo, Gordon Jonathan, Escalon Aline, Cunnac Sébastien, Szurek Boris, Gagnevin Lionel. 2015. Frontiers in Plant Science, 6 (545), 16 p.
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The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release. Lesur Isabelle, Le Provost Grégoire, Bento Pascal, Da Silva Corinne, Leplé Jean-Charles, Murat Florent, Ueno Saneyoshi, Bartholomé Jérôme, Lalanne Céline, Ehrenmann François, Noirot Céline, Burban Benoit, Léger Valérie, Amselem Joelle, Belser Caroline, Quesneville Hadi, Stierschneider Michael, Fluch Silvia, Feldhahn Lasse, Tarkka Mika, Herrmann Sylvie, Buscot François, Klopp Christophe, Kremer Antoine, Salse Jérôme, Aury Jean-Marc, Plomion Christophe. 2015. BMC Genomics, 16:112, 23 p.
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2014

Genes controlling root development in rice. Mai Chung Duc, Phung Nhung Thi Phuong, To Huong T.M., Gonin Mathieu, Hoang Giang Thi, Nguyen Khanh L., Do Vinh Nang, Courtois Brigitte, Gantet Pascal. 2014. Rice, 7 (30), 11 p.
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Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Kuijt Suzanne J.H., Greco Rafaella, Agalou Adamantia, Shao Jingxia, 't Hoen Corine C.J., Övernäs Elin, Osnato Michela, Curiale Serena, Meynard Donaldo, van Gulik Robert, de Faria Maraschin Simone, Atallah Mirna, De Kam Rolf J., Lamers Gerda E.M., Guiderdoni Emmanuel, Rossini Laura, Meijer Annemarie H., Ouwerkerk Pieter B.F.. 2014. Plant Physiology, 164 (4) : pp. 1952-1966.
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Transcriptional and post-transcriptional regulation of the jasmonate signalling pathway in response to abiotic and harvesting stress in Hevea brasiliensis. Pirrello Julien, Leclercq Julie, Dessailly Florence, Rio Maryannick, Piyatrakul Piyanuch, Kuswanhadi, Tang Chaorong, Montoro Pascal. 2014. BMC Plant Biology, 14 (341), 17 p.
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The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice. Conrad Liza J., Khanday Imtiyaz, Johnson Cameron, Guiderdoni Emmanuel, An Gynheung, Vijayraghavan Usha, Sundaresan Venkatesan. 2014. Plant Journal, 80 (5) : pp. 883-894.
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2013

Transcriptional activity, chromosomal distribution and expression effects of transposable elements in Coffea genomes. Lopes Fabrício R., Jjingo Daudi, Da Silva Carlos R.M., Andrade Alan Carvalho, Marraccini Pierre, Teixeira João B., Carazzolle Marcelo Falsarella, Pereira Gonçalo Amarante Guimarães, Pereira Luiz Filipe P., Vanzela André L.L., Wang Lu, Jordan King, Carareto Claudia M.A.. 2013. PloS One, 8 (11):e78931, 16 p.
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2012

Homeologous gene expression in response to growing temperature in a recent allopolyploid (Coffea arabica L.). Combes Marie-Christine, Cenci Alberto, Baraille Hélène, Bertrand Benoît, Lashermes Philippe. 2012. Journal of Heredity, 103 (1) : pp. 36-46.
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SSR markers in transcripts of genes linked to post-transcriptional and transcriptional regulatory functions during vegetative and reproductive development of Elaeis guineensis. Tranbarger Timothy John, Kluabmongkol Wanwisa, Sangsrakru Duangjai, Morcillo Fabienne, Tregear James, Tragoonrung Somvong, Billotte Norbert. 2012. BMC Plant Biology, 12 (1), 12 p.
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Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica. Schmidt Romy, Schippers Jos H.M., Welker Annelie, Mieulet Delphine, Guiderdoni Emmanuel, Mueller-Roeber Bernd. 2012. AoB Plants, 2012 (pls011), 17 p.
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2011

Hétérois et variétés hybrides chez un Allotetraploïde pérenne (Coffea arabica). Bertrand Benoît. 2011. Montpellier : UM2, 73 p. Habilitation à diriger des recherches : Université Montpellier 2
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2009

Implications des interactions noyaux cytoplasmes et de l'allopolyploïdisation sur l'expression phénotypique et génomique chez les agrumes. Bassene Jean Baptiste. 2009. Corte : Université de Corse, 236 p. Thèse de doctorat : Biochimie et biologie moléculaire : Université de Corse
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Innovative approach for transcriptomic analysis of obligate intracellular pathogen: Selective capture of transcribed sequences of Ehrlichia ruminantium. Emboule Loïc, Daigle France, Meyer Damien, Mari Bernard, Pinarello Valérie, Sheikboudou Christian, Magnone Virginie, Frutos Roger, Viari Alain, Barbry Pascal, Martinez Dominique, Lefrançois Thierry, Vachiery Nathalie. 2009. BMC Molecular Biology, 10:111, 12 p.
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This list was generated on Mon Nov 23 04:58:13 2020 CET.