Parcourir par Auteur Cirad

Painting the diversity of a world's favorite fruit: A next generation catalog of cultivated bananas. Sardos Julie, Cenci Alberto, Martin Guillaume, Breton Catherine, Guignon Valentin, Van Den Houwe Ines, Mendez Yaleidis, Sachter-Smith Gabriel, Chase Rachel, Ruas Max, Rivallan Ronan, Paofa Janet, Wigmore William J., Hunter David Tilafono, D'Hont Angélique, Yahiaoui Nabila, Jenny Christophe, Perrier Xavier, Roux Nicolas, Rouard Mathieu. 2024. Plants, People, Planet, 21 p.

Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes. Wang Zheng-Feng, Rouard Mathieu, Droc Gaëtan, Heslop Harrison Pat, Ge Xue-Jun. 2023. GigaScience, 12, 20 p.

Visualizing and inferring chromosome segregation in the pedigree of an improved banana cultivar (gold finger) with genome ancestry mosaic painting. Cenci Alberto, Martin Guillaume, Breton Catherine, D'Hont Angélique, Yahiaoui Nabila, Sardos Julie, Rouard Mathieu. 2023. Horticulturae, 9 (12), n.spéc. Developments in the Genetics and Breeding of Banana Species:1330, 11 p.

The Banana Genome Hub: A community database for genomics in the Musaceae. Droc Gaëtan, Martin Guillaume, Guignon Valentin, Summo Marilyne, Sempere Guilhem, Durant Eloi, Soriano Alexandre, Baurens Franc-Christophe, Cenci Alberto, Breton Catherine, Shah Trushar, Aury Jean-Marc, Ge Xue-Jun, Harrison Pat Heslop, Yahiaoui Nabila, D'Hont Angélique, Rouard Mathieu. 2022. Horticulture Research, 9:uhac221, 10 p.

GeMo: A web-based platform for the visualization and curation of genome ancestry mosaics. Summo Marilyne, Comte Aurore, Martin Guillaume, Perelle Pierrick, Weitz Eric M., Droc Gaëtan, Rouard Mathieu. 2022. Database, 2022:baac057 : 1-5.

Hybridization, missing wild ancestors and the domestication of cultivated diploid bananas. Sardos Julie, Breton Catherine, Perrier Xavier, Van Den Houwe Ines, Carpentier Sébastien Christian, Paofa Janet, Rouard Mathieu, Roux Nicolas. 2022. Frontiers in Plant Science, 13:969220, 17 p.

Managing high-density genotyping data with Gigwa. Sempere Guilhem, Larmande Pierre, Rouard Mathieu. 2022. In : Plant Bioinformatics: methods and protocols. Edwards David (ed.). Cham : Springer-Humana Press, 415-427. (Methods in Molecular Biology, 2443, 2443) ISBN 978-1-0716-2066-3

A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae. Wang Ziwei, Rouard Mathieu, Biswas Manosh Kumar, Droc Gaëtan, Cui Dongli, Roux Nicolas, Baurens Franc-Christophe, Ge Xue-Jun, Schwarzacher Trude, Heslop-Harrison Pat, Liu Qing. 2022. GigaScience, 11:giac027, 21 p.

A digital catalog of high-density markers for banana germplasm collections. Rouard Mathieu, Sardos Julie, Sempere Guilhem, Breton Catherine, Guignon Valentin, Van Den Houwe Ines, Carpentier Sébastien Christian, Roux Nicolas. 2022. Plants, People, Planet, 4 (1), n.spéc. Access and benefit sharing of biodiversity data : 61-67.

AgroLD: A Knowledge Graph Database for plant functional genomics. Larmande Pierre, Tando Ndomassi, Pitollat Bertrand, Guignon Valentin, Rouard Mathieu, Droc Gaëtan, Ruiz Manuel. 2021. . Paris : Société Française de Bio-Informatique, Résumé, 43. Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM 2021), Paris, France, 6 Juillet 2021/9 Juillet 2021.

GreenPhylDB v5: A comparative pangenomic database for plant genomes. Guignon Valentin, Toure Abdel, Droc Gaëtan, Dufayard Jean François, Conte Matthieu, Rouard Mathieu. 2021. Nucleic Acids Research, 49 (D1) : D1464-D1471.

RapGreen, an interactive software and web package to explore and analyze phylogenetic trees. Dufayard Jean François, Bocs Stéphanie, Guignon Valentin, Larivière Delphine, Louis Alexandra, Oubda Nicolas, Rouard Mathieu, Ruiz Manuel, De Lamotte Frédéric. 2021. NAR Genomics and Bioinformatics, 3 (3):lqab088, 6 p.

Unravelling the complex story of intergenomic recombination in ABB allotriploid bananas. Cenci Alberto, Sardos Julie, Hueber Yann, Martin Guillaume, Breton Catherine, Roux Nicolas, Swennen Rony, Carpentier Sébastien Christian, Rouard Mathieu. 2021. Annals of Botany, 127 (1) : 7-20.

The South Green Genome Hubs. Droc Gaëtan, Argout Xavier, Bocs Stéphanie, Comte Aurore, Dereeper Alexis, Dufayard Jean François, Garsmeur Olivier, Gkanogiannis Anestis, Guignon Valentin, Hamelin Chantal, Lopez David, Oubda Nicolas, Martin Guillaume, Ravel Sébastien, Ruiz Manuel, Summo Marilyne, Thomas Coline, Tranchant-Dubreuil Christine, Rouard Mathieu. 2020. . SFBI, IFB, GDR-BIM. Montpellier : SFBI, 1 p. Journées ouvertes de biologie, informatique et mathématique (JOBIM 2020), Montpellier, France, 30 Juin 2020/3 Juillet 2020.

South Green bioinformatic resources for tropical and Mediterranean crops. Rouard Mathieu, Bocs Stéphanie, Breton Catherine, Comte Aurore, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, Larmande Pierre, Lopez David, Mahé Frédéric, Martin Guillaume, Orjuela-Bouniol Julie, Pitollat Bertrand, Ravel Sébastien, Ruiz Manuel, Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, Tando Ndomassi, Tranchant-Dubreuil Christine. 2020. . SFBI, IFB, GDR-BIM. Montpellier : SFBI, 1 p. Journées ouvertes de biologie, informatique et mathématique (JOBIM 2020). 20, Montpellier, France, 30 Juin 2020/3 Juillet 2020.

The complex story of intergenomic recombination in ABB allotriploid bananas. [W099]. Cenci Alberto, Sardos Julie, Martin Guillaume, Breton Catherine, Roux Nicolas, Swennen Rony, Carpentier Sébastien Christian, Rouard Mathieu. 2020. In : Abstracts workshops of the PAG XXVIII. San Diego : PAG, Résumé, 43-44. Plant and Animal Genome. 28, San Diego, États-Unis, 11 Janvier 2020/15 Janvier 2020.

BrAPI—an application programming interface for plant breeding applications. Selby Peter, Abbeloos Rafael, Backlund Jan Erik, Basterrechea Salido Martin, Bauchet Guillaume, Benites-Alfaro Omar E., Birkett Clay, Calaminos Viana C., Carceller Pierre, Cornut Guillaume, Vasques Costa Bruno, Edwards Jeremy D., Finkers Richard, Yanxin Gao Star, Ghaffar Mehmood, Glaser Philip, Guignon Valentin, Hok Puthick, Kilian Andrzej, König Patrick, Lagare Jack Elendil B., Lange Matthias, Laporte Marie-Angélique, Larmande Pierre, LeBauer David S., Lyon David A., Marshall David S., Matthews Dave, Milne Iain, Mistry Naymesh, Morales Nicolas, Mueller Lukas, Neveu Pascal, Papoutsoglou Evangelia, Pearce Brian, Perez-Masias Ivan, Pommier Cyril, Ramírez-González Ricardo H., Rathore Abhishek, Raquel Angel Manica, Raubach Sebastian, Rife Trevor, Robbins Kelly, Rouard Mathieu, Sarma Chaitanya, Scholz Uwe, Sempere Guilhem, et al.. 2019. Bioinformatics, 35 (20) : 4147-4155.

Combining ex situ and in situ data in the Musa Germplasm Information System (MGIS). Ruas Max, Guignon Valentin, Jenny Christophe, Chase Rachel, Sardos Julie, Sempere Guilhem, Carpentier Sébastien Christian, Dulloo Mohammad Ehsan, Van Den Houwe Ines, Roux Nicolas, Rouard Mathieu. 2019. In : Dedicated to the origins of agriculture and the domestication, evolution and utilization of genetic resources. Abstracts book. IRD, Bioversity International, Agropolis International, CIRAD, Montpellier SupAgro, Université de Montpellier, INRA. Montpellier : IRD, Résumé, p. 117. Jack R. Harlan International Symposium. 3, Montpellier, France, 3 Juin 2019/7 Juin 2019.

Gigwa v2—Extended and improved genotype investigator. Sempere Guilhem, Petel Adrien, Rouard Mathieu, Frouin Julien, Hueber Yann, De Bellis Fabien, Larmande Pierre. 2019. GigaScience, 8 (5), 9 p.

Managing and exploring large genotyping data with Gigwa. Sempere Guilhem, Petel Adrien, Rouard Mathieu, Larmande Pierre, Hueber Yann, Frouin Julien, De Bellis Fabien. 2019. . PAG. San Diego : PAG, Résumé, 2 p. Plant and Animal Genome Conference (PAG). 27, San Diego, États-Unis, 12 Janvier 2019/16 Janvier 2019.

Musa balbisiana genome reveals subgenome evolution and functional divergence. Wang Zhuo, Miao Hongxia, Liu Juhua, Xu Biyu, Yao Xiaoming, Xu Chunyan, Zhao Shancen, Fang Xiaodong, Jia Caihong, Wang Jingyi, Zhang Jianbin, Li Jing, Xu Yi, Wang Jiashui, Ma Weihong, Wu Zhixiang, Yu Lili, Yang Yulan, Liu Chun, Guo Yu, Sun Silong, Baurens Franc-Christophe, Martin Guillaume, Salmon Frédéric, Garsmeur Olivier, Yahiaoui Nabila, Hervouet Catherine, Rouard Mathieu, Laboureau Nathalie, Habas Rémy, Ricci Sebastien, Peng Ming, Guo Anping, Xie Jianghui, Li Yin, Ding Zehong, Yan Yan, Tie Weiwei, D'Hont Angélique, Hu Wei, Jin Zhiqiang. 2019. Nature Plants, 5 : 810-821.

Recombination and large structural variations shape interspecific edible bananas genomes. Baurens Franc-Christophe, Martin Guillaume, Hervouet Catherine, Salmon Frédéric, Yohomé David, Ricci Sebastien, Rouard Mathieu, Habas Rémy, Lemainque Arnaud, Yahiaoui Nabila, D'Hont Angélique. 2019. Molecular Biology and Evolution, 36 (1) : 97-111.

Two large reciprocal translocations characterized in the disease resistance-rich burmannica genetic group of Musa acuminata. Dupouy Marion, Baurens Franc-Christophe, Derouault Paco, Hervouet Catherine, Cardi Céline, Cruaud Corinne, Istace Benjamin, Labadie Karine, Guiougou Chantal, Toubi Lyonel, Salmon Frédéric, Mournet Pierre, Rouard Mathieu, Yahiaoui Nabila, Lemainque Arnaud, Martin Guillaume, D'Hont Angélique. 2019. Annals of Botany, 124 (2) : 319-329.

The 2016 Global Strategy for the conservation and use of Musa genetic resources - key strategic elements. De Langhe Edmond, Laliberté Brigitte, Chase Rachel, Domaingue Robert, Horry Jean-Pierre, Karamura Deborah, Rouard Mathieu, Ruas Max, Sardos Julie, Thomas J.E., Van den Bergh Inge, Van Den Houwe Ines, Roux Nicolas. 2018. In : Proceedings of the X International Symposium on Banana: ISHS-ProMusa Symposium on Agroecological Approaches to Promote Innovative Banana Production Systems. Van den Bergh Inge (ed.), Risède Jean-Michel (ed.), Johnson Vincent (ed.). ISHS. Louvain : ISHS, 71-78. (Acta Horticulturae, 1196) ISBN 978-94-6261-192-4 International Symposium on Banana: ISHS-ProMusa Symposium on Agroecological Approaches to Promote Innovative Banana Production Systems. 10, Montpellier, France, 10 Octobre 2016/14 Octobre 2016.

Mosaic genome structure and chromosome segregation in polyploid interspecific plantain bananas and derived breeding accessions [W077]. Baurens Franc-Christophe, Martin Guillaume, Hervouet Catherine, Njembele J. Célestin, Habas Rémy, Salmon Frédéric, Ricci Sebastien, Rouard Mathieu, Yahiaoui Nabila, D'Hont Angélique. 2018. In : Proceedings Plant and Animal Genome XXVI Conference. PAG. San Diego : PAG, Résumé, 1 p. Plant and Animal Genomes Conference. 26, San Diego, États-Unis, 13 Janvier 2018/17 Janvier 2018.

South Green, une plateforme de bioinformatique tournée vers l'agriculture dans les pays du sud. Ravel Sébastien, Bocs Stéphanie, Brousseau Louise, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, Larmande Pierre, Mahé Frédéric, Martin Guillaume, Orjuela-Bouniol Julie, Pitollat Bertrand, Rouard Mathieu, Ruiz Manuel, Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, Tando Ndomassi, Tranchant-Dubreuil Christine. 2018. In : JOBIM 2018 Abstracts. SFBI, GdR BiM, IFB, AMU, INSERM, CNRS. Marseille : SFBI, 418-420. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2018), Marseille, 3 Juillet 2018/6 Juillet 2018.

Three new genome assemblies support a rapid radiation in Musa acuminata (wild banana). Rouard Mathieu, Droc Gaëtan, Martin Guillaume, Sardos Julie, Hueber Yann, Guignon Valentin, Cenci Alberto, Geigle B., Hibbins M.S., Yahiaoui Nabila, Baurens Franc-Christophe, Berry Vinvent, Hahn M.W., D'Hont Angélique, Roux Nicolas. 2018. Genome Biology and Evolution, 10 (12) : 3129-3140.

Characterization of a large reciprocal chromosomal translocation in banana (Musa acuminata) and its impact on chromosomal segregation using NGS. [W064]. Martin Guillaume, Carreel Françoise, Coriton Olivier, Hervouet Catherine, Cardi Céline, Roques Danièle, Rouard Mathieu, Sardos Julie, Baurens Franc-Christophe, D'Hont Angélique. 2017. In : Proceedings Plant and Animal Genome XXV Conference. San Diego : PAG, Résumé, 1 p. Plant and Animal Genome Conference. 25, San Diego, États-Unis, 14 Janvier 2017/18 Janvier 2017.

Evolution of the banana genome (Musa acuminata) is impacted by large chromosomal translocations. Martin Guillaume, Carreel Françoise, Coriton Olivier, Hervouet Catherine, Cardi Céline, Derouault Paco, Roques Danièle, Salmon Frédéric, Rouard Mathieu, Sardos Julie, Labadie Karine, Baurens Franc-Christophe, D'Hont Angélique. 2017. Molecular Biology and Evolution, 34 (9), 28 p.

Evolution of the banana genome is impacted by large chromosomal translocations. Martin Guillaume, Carreel Françoise, Coriton Olivier, Hervouet Catherine, Cardi Céline, Derouault Paco, Roques Danièle, Salmon Frédéric, Rouard Mathieu, Sardos Julie, Labadie Karine, Baurens Franc-Christophe, D'Hont Angélique. 2017. . Montpellier : INRA, Résumé, 1 p. Workshop DynaGeV : Dynamique des Génomes Végétaux. 3, Montpellier, France, 8 Juin 2017/9 Juin 2017.

Evolution of the banana genome is impacted by large chromosomal translocations. Martin Guillaume, Carreel Françoise, Coriton Olivier, Hervouet Catherine, Cardi Céline, Derouault Paco, Roques Danièle, Salmon Frédéric, Rouard Mathieu, Sardos Julie, Labadie Karine, Baurens Franc-Christophe, D'Hont Angélique. 2017. . Giessen : s.n., Résumé, 1 p. International Symposium on Genomics of Plant Genetic Resources (GPGR4). 4, Giessen, Allemagne, 3 Septembre 2017/7 Septembre 2017.

Genome structure and chromosome segregation in triploid interspecific plantain bananas (AAB) and breeding accessions (AAAB). Baurens Franc-Christophe, Martin Guillaume, Rouard Mathieu, Salmon Frédéric, Njembele J. Célestin, Habas Rémy, Ricci Sebastien, D'Hont Angélique. 2017. . Giessen : s.n., Résumé, 1 p. International Symposium on Genomics of Plant Genetic Resources (GPGR4). 4, Giessen, Allemagne, 3 Septembre 2017/7 Septembre 2017.

Large chromosomal structural variations between M. acuminata and M balbisiana and their consequences on chromosome recombination and segregation in a AAAB polyploidy context. Baurens Franc-Christophe, Martin Guillaume, Rouard Mathieu, Salmon Frédéric, Njembele J. Célestin, Habas Rémy, Ricci Sébastien, D'Hont Angélique. 2017. In : Abstract Book Dynagev 2017. Réseau scientifique DYNAGEV. Montpellier : INRA, Résumé, 20. Colloque annuel DynaGeV : Dynamique des génomes végétaux. 3, Montpellier, France, 8 Juin 2017/9 Juin 2017.

MGIS: Managing banana (Musa spp.) genetic resources information and high-throughput genotyping data. Ruas Max, Guignon Valentin, Sempere Guilhem, Sardos Julie, Hueber Yann, Duvergey H., Andrieu A., Chase Rachel, Jenny Christophe, Hazekamp T., Irish B., Jelali K., Adeka J., Ayala-Silva T., Chao C.P., Daniells J., Dowiya B., Effa Effa B., Gueco L., Herradura L., Ibobondji L., Kempenaers E., Kilangi J., Muhangi S., Ngo Xuan P., Paofa Janet, Pavis Claude, Thiemele D., Tossou Christophe, Sandoval Jorge A., Sutanto A., Vangu Paka G., Yi G., Van Den Houwe Ines, Roux Nicolas, Rouard Mathieu. 2017. Database, 2017:bax046, 12 p.

The South Green Bioinformatics platform, a comprehensive resource for crop genomics. Ruiz Manuel, Dereeper Alexis, Droc Gaëtan, Sarah Gautier, Tranchant-Dubreuil Christine, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, De Lamotte Frédéric, Larmande Pierre, Sabot François, Sempere Guilhem, Summo Marilyne, Pitollat Bertrand, This Dominique, Bocs Stéphanie, Hueber Yann, El Hassouni Nordine, Martin Guillaume, Gkanogiannis Anestis, Ravel Sébastien, Monat Cécile, Tando Ndomassi, Rouard Mathieu. 2017. In : Proceedings X-Meeting 2017. s.l. : s.n., 1 p. International Conference of the AB3. 13, São Pedro, Brésil, 4 Octobre 2017/6 Octobre 2017.

South Green bioinformatics platform : Plateforme collaborative de bioinformatique verte héraultaise. Bocs Stéphanie, Couvin David, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Gkanogiannis Anestis, Guignon Valentin, Hamelin Chantal, Hueber Yann, Larivière Delphine, Larmande Pierre, Martin Guillaume, Monat Cécile, Ortega Abboud Enrique, Pitollat Bertrand, Pointet Stéphanie, Ravel Sébastien, Rouard Mathieu, This Patrice, Tranchant-Dubreuil Christine. 2017. . Montpellier : CIRAD, 1 poster Amphithéâtre "Patrimoine Numérique Scientifique", Montpellier, France, 20 Février 2017/20 Février 2017.

Improvement of the banana Musa acuminata reference sequence using NGS data and semi-automated bioinformatics methods. Martin Guillaume, Baurens Franc-Christophe, Droc Gaëtan, Rouard Mathieu, Cenci Alberto, Kilian Andrzej, Hastie Alex, Dolezelova M., Aury Jean-Marc, Alberti Adriana, Carreel Françoise, D'Hont Angélique. 2016. BMC Genomics, 17 (243), 12 p.

One hundred and six diploids to unravel the genetics of traits in banana: a panel for genome-wide association study and its application to the seedless phenotype. [W075]. Sardos Julie, Rouard Mathieu, Hueber Yann, Cenci Alberto, Hyma Katie E., Van Den Houwe Ines, Hribova Eva, Courtois Brigitte, Roux Nicolas. 2016. . San Diego : PAG, Résumé, 1 p. Plant and Animal Genome Conference, San Diego, États-Unis, 9 Janvier 2016/13 Janvier 2016.

The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Guignon Valentin, Hueber Yann, Rouard Mathieu, Bocs Stéphanie, Couvin David, De Lamotte Frédéric, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Gkanogiannis Anestis, Hamelin Chantal, Larivière Delphine, Martin Guillaume, Ortega Enrique, Pitollat Bertrand, Pointet Stéphanie, Ruiz Manuel, Gautier Sarah, Summo Marilyne, This Dominique, Ravel Sébastien, Larmande Pierre, Monat Cécile, Sabot François, Tando Ndomassi, Tranchant-Dubreuil Christine, Sempere Guilhem, Dereeper Alexis. 2016. Current Plant Biology, 7-8 : 6-9.

A genome-wide association study on the seedless phenotype in banana (Musa spp.) reveals the potential of a selected panel to detect candidate genes in a vegetatively propagated crop. Sardos Julie, Rouard Mathieu, Hueber Yann, Cenci Alberto, Hyma Katie E., Van Den Houwe Ines, Hribova Eva, Courtois Brigitte, Roux Nicolas. 2016. PloS One, 11 (5):e0154448, 25 p.

Managing banana genetic resources and genomic information with the Triplet Drupal/Tripal/Chado [P0944]. Guignon Valentin, Ruas Max, Droc Gaëtan, Dereeper Alexis, Sardos Julie, Hueber Yann, Dufayard Jean-François, Roux Nicolas, Rouard Mathieu. 2015. In : Plant and Animal Genomes Conference XXIII Conference, San diego, United States, San Diego, United States, January 10-14, 2015. s.l. : s.n. Plant and Animal Genome Conference. 23, San Diego, États-Unis, 10 Janvier 2015/14 Janvier 2015.

South Green bioinformatics platform: Update 2015. Armero A., Baurens Franc-Christophe, Bocs Stéphanie, Breil A., De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Garsmeur Olivier, Guignon Valentin, Hamelin Chantal, Hueber Yann, Kougbeadjo Ayite, Larivière Delphine, Larmande Pierre, Lorenzo Jonathan, Martin Guillaume, Monat Cécile, Ndomassi T., Ortega Abboud Enrique, Pitollat Bertrand, Ravel Sébastien, Ranwez Vincent, Rouard Mathieu, Ruiz E., Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, This Dominique, Tranchant-Dubreuil Christine, Vallier Félix. 2015. In : Plant Genomics Congress. Global Engage. Londres : Global Engage, 51. Plant Genomics Congress. 3, Londres, Royaume-Uni, 11 Mai 2015/12 Mai 2015.

Updates on the Musa acuminata reference genome sequence [W074]. D'Hont Angélique, Martin Guillaume, Baurens Franc-Christophe, Droc Gaëtan, Cenci Alberto, Guignon Valentin, Ruas Max, Carreel Françoise, Kilian Andrzej, Aury Jean-Marc, Hastie Alex, Dolezel Jaroslav, Roux Nicolas, Bocs Stéphanie, Rouard Mathieu. 2015. In : Plant and Animal Genomes Conference XXIII Conference, San diego, United States, San Diego, United States, January 10-14, 2015. s.l. : s.n., Résumé Plant and Animal Genome Conference. 23, San Diego, États-Unis, 10 Janvier 2015/14 Janvier 2015.

The coffee genome hub: a resource for coffee genomes. Dereeper Alexis, Bocs Stéphanie, Rouard Mathieu, Guignon Valentin, Ravel Sébastien, Tranchant-Dubreuil Christine, Poncet Valérie, Garsmeur Olivier, Lashermes Philippe, Droc Gaëtan. 2015. Nucleic Acids Research, 43 (D1), D1028-D1035

The Banana Genome Hub : [W079]. Droc Gaëtan, Larivière Delphine, Guignon Valentin, Yahiaoui Nabila, This Dominique, Garsmeur Olivier, Dereeper Alexis, Hamelin Chantal, Argout Xavier, Dufayard Jean-François, Lengellé Juliette, Baurens Franc-Christophe, Cenci Alberto, Pitollat Bertrand, D'Hont Angélique, Ruiz Manuel, Rouard Mathieu, Bocs Stéphanie. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 Janvier 2014/15 Janvier 2014.

Investigating chromosomal structural variations in Musa acuminate using NGS approaches : [W077]. Martin Guillaume, Carreel Françoise, Baurens Franc-Christophe, Cardi Céline, Kilian Andrzej, Rouard Mathieu, Jenny Christophe, D'Hont Angélique. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 Janvier 2014/15 Janvier 2014.

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Denoeud France, Carretero-Paulet Lorenzo, Dereeper Alexis, Droc Gaëtan, Guyot Romain, Pietrella Marco, Chunfang Zheng, Alberti Adriana, Anthony François, Aprea Giuseppe, Aury Jean-Marc, Bento Pascal, Bernard Maria, Bocs Stéphanie, Campa Claudine, Cenci Alberto, Combes Marie-Christine, Crouzillat Dominique, Da Silva Corinne, Daddiego Loretta, De Bellis Fabien, Dussert Stéphane, Garsmeur Olivier, Gayraud Thomas, Guignon Valentin, Jahn Katharina, Jamilloux Véronique, Joët Thierry, Labadie Karine, Tianying Lan, Leclercq Julie, Lepelley Maud, Leroy Thierry, Lei-Ting Li, Librado Pablo, Lopez Loredana, Muñoz Adriana, Noël Benjamin, Pallavicini Alberto, Perrotta Gaetano, Poncet Valérie, Pot David, Priyono, Rigoreau Michel, Rouard Mathieu, Rozas Julio, Tranchant-Dubreuil Christine, VanBuren Robert, Qiong Zhang, Andrade Alan A., Argout Xavier, Bertrand Benoît, De Kochko Alexandre, Graziosi Giorgio, Henry Robert, Jayarama, Ming Ray, Nagai Chifumi, Rounsley Steve, Sankoff David, Giuliano Giovanni, Albert Victor A., Wincker Patrick, Lashermes Philippe. 2014. Science, 345 (6201) : 1181-1184.

The south green bioinformatics platform : [P988]. Rouard Mathieu, Dereeper Alexis, Droc Gaëtan, Sarah Gautier, Dufayard Jean-François, Guignon Valentin, Hamelin Chantal, Homa Félix, De Lamotte Frédéric, Larmande Pierre, Larivière Delphine, Sabot François, Sempere Guilhem, Summo Marilyne, Pitollat Bertrand, Pointet Stéphanie, This Dominique, Bocs Stéphanie, Ruiz Manuel. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 Janvier 2014/15 Janvier 2014.

Banana genome hub. Droc Gaëtan, Larivière Delphine, Guignon Valentin, Yahiaoui Nabila, This Dominique, Garsmeur Olivier, Dereeper Alexis, Hamelin Chantal, Argout Xavier, Dufayard Jean-François, Lengellé Juliette, Baurens Franc-Christophe, Cenci Alberto, Pitollat Bertrand, D'Hont Angélique, Ruiz Manuel, Rouard Mathieu, Bocs Stéphanie. 2013. In : 6th International Biocuration Conference, Cambridge, Royaume-Uni, april 07-10 2013. s.l. : s.n., 1 p. International Biocuration Conference. 6, Cambridge, Royaume-Uni, 7 Avril 2013/10 Avril 2013.

Exploring predicted musa genes using the greenphyl comparative genomics database : W078. Guignon Valentin, Cenci Alberto, Dufayard Jean-François, Droc Gaëtan, Roux Nicolas, Rouard Mathieu. 2013. In : Plant and Animal Genome XXI conference, San Diego, USA, January 12-16 2013,. s.l. : s.n., Résumé, 1 p. Plant and Animal Genome conference. 21, San Diego, États-Unis, 12 Janvier 2013/16 Janvier 2013.

Function prediction in plant genomes from large scale phylogenomics analyses : P0932. Guignon Valentin, Dufayard Jean-François, Briois Sébastien, Conte Matthieu, Rouard Mathieu. 2013. In : Plant and Animal Genome XXI conference, San Diego, USA, January 12-16 2013,. s.l. : s.n., Résumé, 1 p. Plant and Animal Genome conference. 21, San Diego, États-Unis, 12 Janvier 2013/16 Janvier 2013.

The banana genome hub. Droc Gaëtan, Larivière Delphine, Guignon Valentin, Yahiaoui Nabila, This Dominique, Garsmeur Olivier, Dereeper Alexis, Hamelin Chantal, Argout Xavier, Dufayard Jean-François, Lengellé Juliette, Baurens Franc-Christophe, Cenci Alberto, Pitollat Bertrand, D'Hont Angélique, Ruiz Manuel, Rouard Mathieu, Bocs Stéphanie. 2013. Database, 2013 (bat035), 14 p.

Chado Controller : Advanced annotation management with a community annotation system. Guignon Valentin, Droc Gaëtan, Alaux Michael, Baurens Franc-Christophe, Garsmeur Olivier, Poiron Claire, Carver Timothy L.W., Rouard Mathieu, Bocs Stéphanie. 2012. Bioinformatics, 28 (7) : 1054-1056.

Foundation characteristics of edible Musa triploids revealed from allelic distribution of SSR markers. Hippolyte Isabelle, Jenny Christophe, Gardes Laëtitia, Bakry Frédéric, Rivallan Ronan, Pomies Virginie, Cubry Philippe, Tomekpé Kodjo, Risterucci Ange-Marie, Roux Nicolas, Rouard Mathieu, Arnaud Elizabeth, Kolesnikova-Allen Maria, Perrier Xavier. 2012. Annals of Botany, 109 (5) : 937-951.

Role of bioinformatics as a tool. Rouard Mathieu, Carpentier Sébastien Christian, Bocs Stéphanie, Droc Gaëtan, Argout Xavier, Roux Nicolas, Ruiz Manuel. 2012. In : Genetics, genomics and breeding of bananas. Pillay Michael (ed.), Ude George (ed.), Kole Chittaranjan (ed.). Enfield : Science Publishers, 194-216. (Genetics, genomics and breeding of crop plants) ISBN 978-1-57808-788-4

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. D'Hont Angélique, Denoeud France, Aury Jean-Marc, Baurens Franc-Christophe, Carreel Françoise, Garsmeur Olivier, Noël Benjamin, Bocs Stéphanie, Droc Gaëtan, Rouard Mathieu, Da Silva Corinne, Jabbari Kamel, Cardi Céline, Poulain Julie, Souquet Marlène, Labadie Karine, Jourda Cyril, Lengellé Juliette, Rodier-Goud Marguerite, Alberti Adriana, Bernard Maria, Correa Margot, Ayyampalayam Saravanaraj, Mckain Michael R, Leebens-Mack Jim, Burgess Diane, Freeling Mike, Mbéguié-A-Mbéguié Didier, Chabannes Matthieu, Wicker Thomas, Panaud Olivier, Barbosa Jose, Hribova Eva, Heslop Harrison Pat, Habas Rémy, Rivallan Ronan, François Philippe, Poiron Claire, Kilian Andrzej, Burthia Dheema, Jenny Christophe, Bakry Frédéric, Brown Spencer, Guignon Valentin, Kema Gert H.J., Dita Miguel A., Waalwijk Cees, Joseph Steeve, Diévart Anne, Jaillon Olivier, Leclercq Julie, Argout Xavier, Lyons Eric, Almeida Ana, Jeridi Mouna, Dolezel Jaroslav, Roux Nicolas, Risterucci Ange-Marie, Weissenbach Jean, Ruiz Manuel, Glaszmann Jean-Christophe, Quetier Francis, Yahiaoui Nabila, Wincker Patrick. 2012. Nature, 488 (7410) : 213-217.

GreenPhylDB v2.0: Comparative and functional genomics in plants. Rouard Mathieu, Guignon Valentin, Aluome Christelle, Laporte Marie-Angélique, Droc Gaëtan, Walde Christian, Zmasek Christian M., Perin Christophe, Conte Matthieu. 2011. Nucleic Acids Research, 39, D1095-D1102

CocoaGen DB: A web portal for crossing cocoa phenotypic, genetic and genomic data from ICGD and Tropgene DB database. Argout Xavier, Ruiz Manuel, Rouard Mathieu, Turnbull Christ J., Lanaud Claire, Rosenquist Eric, Courtois Brigitte. 2010. In : 15th International Cocoa Research Conference : cocoa productivity, quality, profitability, human health and the environment = 15e Conférence internationale sur la recherche cacaoyère : Productivité, qualité, rentabilité du cacao, santé humaine et environnement ; 15 Conferencia Internacional de Pesquisas em Cacau. Cacau : produtividade, qualidade, rentabilidade, saude humanna e amb. Lagos : Cocoa Producers' Alliance, 515-518. Conférence internationale sur la recherche cacaoyère. 15, San José, Costa Rica, 9 Octobre 2006/14 Octobre 2006.

GNPAnnot Project 2010. Droc Gaëtan, Guignon Valentin, Baurens Franc-Christophe, Jouffe Vincent, Poiron Claire, Lengellé Juliette, Garsmeur Olivier, Rouard Mathieu, Bocs Stéphanie, Alaux Michael, Brigitte Leatitia, Steinbach Samson Delphine, Kimmel Erik, Pommier Cyril, Luyten Isabelle, Terrier Nancy, Leroy Philippe, Quesneville Hadi, Amselem Joelle, Brault Baptiste, Simon Adeline, Dominguez del Angel Victoria, Hoede Claire, Fillinger Sabine, Meyer Michel, Rouxel Thierry, Lebrun Marc-Henri, Legeai Fabrice, Kerbellec Goulven, Collin Olivier, Gauthier Jean-Pierre, D'Alençon Emmanuelle, Cousserans François, Fournier Philippe, Tagu Denis. 2010. In : Séminaire Génoplante, Pont-Royal en Provence, France, 29-31 mars 2010. s.l. : s.n., 1 p. Séminaire Génoplante, Pont-Royal Provence, France, 29 Mars 2010/31 Mars 2010.

GreenPhyl : Phylogenomic resources for comparative and functional genomics. Conte Matthieu, Perin Christophe, Laporte Marie-Angélique, Droc Gaëtan, Aluome Christelle, Guignon Valentin, Lanau Nadège, Sempere Guilhem, Rouard Mathieu. 2010. In : Final program and abstracts of the 2nd International Symposium on Genomics of Plant Genetic Resources, Bologna, Italy, 24-27 April 2010. Rome : Bioversity International, Résumé, 103. International Symposium on Genomics of Plant Genetic Resources. 2, Bologne, Italie, 24 Avril 2010/27 Avril 2010.

Mechanisms of haplotype divergence at the RGA08 nucleotide-binding leucine-rich repeat gene locus in wild banana (Musa balbisiana). Baurens Franc-Christophe, Bocs Stéphanie, Rouard Mathieu, Matsumoto Takashi, Miller Roberto Neil Gerard, Rodier-Goud Marguerite, Mbéguié-A-Mbéguié Didier, Yahiaoui Nabila. 2010. BMC Plant Biology, 10 (149), 16 p.

Towards a bioinformatics platform for the Musa research community : [Abstract W076]. Rouard Mathieu, Argout Xavier, Bocs Stéphanie, Conte Matthieu, Droc Gaëtan, Guignon Valentin, Hamelin Chantal, Roux Nicolas, Ruiz Manuel. 2010. In : Abstracts of Plant and Animal Genomes XVIIIth Conference, San Diego, CA (USA), January 09-13, 2010. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 18, San Diego, États-Unis, 9 Janvier 2010/13 Janvier 2010.

GnpAnnot community annotation system : Features, qualifiers, values. Sidibé-Bocs Stéphanie, Legeai Fabrice, Droc Gaëtan, Rouard Mathieu, Alaux Michael, Leroy Philippe, Fournier P., Terrier Nancy, Baurens Franc-Christophe, Garsmeur Olivier, Poiron Claire, Guignon Valentin, Simon A., Hoede Claire, Steinbach Samson Delphine, Lebrun Marc-Henri, Tagu Denis, Quesneville H., Amselem Joelle. 2009. In : 3rd International Biocuration Conference, 16-19 March 2009, Berlin, Germany. s.l. : s.n., Résumé, 66. International Biocuration Conference. 3, Berlin, Allemagne, 16 Avril 2009/19 Avril 2009.

The Generation Challenge Programme platform : Semantic standards and workbench for crop science. Bruskiewich Richard, Senger Martin, Davenport Guy, Ruiz Manuel, Rouard Mathieu, Hazekamp Tom, Takeya Masaru, Doi Koji, Satoh Kouji, Costa Marcos, Simon Reinhard, Balaji Jayashree, Akintunde Akinnola, Mauleon Ramil P., Wanchana Samart, Shah Trushar, Anacleto Mylah, Portugal Arllet, Jun Ulat Victor, Thongjuea Supat, Braak Kyle, Ritter Sebastian, Dereeper Alexis. 2008. International Journal of Plant Genomics, 2008, 6 p.

GnpAnnot Project 2008. Sidibé-Bocs Stéphanie, Droc Gaëtan, Ruiz Manuel, Rouard Mathieu, Roux Nicolas, Alaux Michael, Steinbach Samson Delphine, Kimmel Erik, Pommier Cyril, Luyten Isabelle, et al.. 2008. In : Séminaire Genoplante, Arles, 1-3 avril 2008. s.l. : s.n., 1 p. Génoplante, Arles, France, 1 Avril 2008/3 Avril 2008.

GreenPhylDB : a database for plant comparative genomics. Conte Matthieu, Gaillard Sylvain, Lanau Nadège, Rouard Mathieu, Perin Christophe. 2008. Nucleic Acids Research, 36, D991-D998

Heterozygosity in diploid Musa lines: Implications for marker development, genomics, sequencing and breeding vegetatively propagated crops. Heslop Harrison Pat, Cheung Foo, Moskal William A., Hippolyte Isabelle, Baurens Franc-Christophe, Bakry Frédéric, Sasaki Takuji, Matsumoto Takashi, Rouard Mathieu, Schwarzacher Trude, Roux Nicolas, Town Christopher. 2008. In : Abstracts of Plant and Animal Genomes XVIth Conference, San Diego, CA (USA), January 12-16, 2008. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 16, San Diego, États-Unis, 12 Janvier 2008/16 Janvier 2008.

I-GOST a phylogenomic tool for plant comparative genomics. Conte Matthieu, Rouard Mathieu, Droc Gaëtan, Perin Christophe. 2008. In : Abstracts of Plant and Animal Genomes XVIth Conference, San Diego, CA (USA), January 12-16, 2008. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 16, San Diego, États-Unis, 12 Janvier 2008/16 Janvier 2008.

The generation challenge programme comparative plant stress-responsive gene catalogue. Wanchana Samart, Thongjuea Supat, Jun Ulat Victor, Anacleto Mylah, Mauleon Ramil P., Conte Matthieu, Rouard Mathieu, Ruiz Manuel, Krishnamurthy Nandini, Sjolander Kimmen, Van Hintum Theo, Bruskiewich Richard. 2008. Nucleic Acids Research, 36 : 943-946.

Comparative genomics of banana and rice genomes: Insight into an RGA cluster. Baurens Franc-Christophe, Miller Roberto Neil Gerard, Lescot-David Magali, Rouard Mathieu, Pappas Junior Georgios, Matsumoto Takashi, Roux Nicolas, Sasaki Takuji, Sidibé-Bocs Stéphanie, D'Hont Angélique. 2007. In : 6 th Plant Genomics European Meetings, Tenerife, Spain, october 03-06 2007. s.l. : s.n., 1 p. Plant Genomics European Meetings. 6, Ténérife, Espagne, 3 Octobre 2007/6 Octobre 2007.

Comparison of hom(oe)ologous regions containing clusters of duplicated RGAs within Musa species and with rice. Sidibé-Bocs Stéphanie, Pappas Junior Georgios, Rouard Mathieu, Legeai Fabrice, Droc Gaëtan, Jouffe Vincent, Garsmeur Olivier, Cardi Céline, D'Hont Angélique, Matsumoto Takashi, Miller Roberto Neil Gerard, Baurens Franc-Christophe. 2007. In : 8 èmes Journées Ouvertes Biologie Informatique Mathématiques (JOBIM), Marseille, France, 10-12 juillet 2007. s.l. : s.n., 4 p. Journées Ouvertes Biologie Informatique Mathématiques (JOBIM). 8, Marseille, France, 10 Juillet 2007/12 Juillet 2007.

Fundamental insights into the Musa genome based on EST and BAC. Sasaki Takuji, Namiki Nobukazu, Baurens Franc-Christophe, Souza Manoel, Heslop Harrison Pat, Dolezel Jaroslav, Rouard Mathieu, Roux Nicolas. 2007. In : Abstracts of Plant and Animal Genomes XVth Conference, San Diego, CA (USA), January 13-17, 2007. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 15, San Diego, États-Unis, 13 Janvier 2007/17 Janvier 2007.

Genotyping of composite germplasm set, Tier 1, Musa (SP1). Hippolyte Isabelle, Kolesnikova-Allen Maria, Perrier Xavier, Rouard Mathieu, Roux Nicolas. 2007. In : Annual Research Meeting Generation Challenge Programme, Benoni, South Africa, 12-16 September 2007. s.l. : s.n., 1 p. Annual Research Meeting Generation Challenge Programme, Benoni, Afrique du Sud, 12 Septembre 2007/16 Septembre 2007.

Supporting distribution of reference germplasm (Musa) (SP1). Dolezel Jaroslav, Hippolyte Isabelle, Jenny Christophe, Rouard Mathieu, Roux Nicolas. 2007. In : Annual Research Meeting Generation Challenge Programme, Benoni, South Africa, 12-16 September 2007. s.l. : s.n., 1 p. Annual Research Meeting Generation Challenge Programme, Benoni, Afrique du Sud, 12 Septembre 2007/16 Septembre 2007.

Targeted Musa genome sequencing and frame map construction (SP2). Bakry Frédéric, Baurens Franc-Christophe, Dolezel Jaroslav, Heslop Harrison Pat, Hippolyte Isabelle, Matsumoto Takashi, Miller Roberto Neil Gerard, Rouard Mathieu, Roux Nicolas, Sidibé-Bocs Stéphanie, Souza Manoel, Sasaki T.. 2007. In : Annual Research Meeting Generation Challenge Programme, Benoni, South Africa, 12-16 September 2007. s.l. : s.n., 1 p. Annual Research Meeting Generation Challenge Programme, Benoni, Afrique du Sud, 12 Septembre 2007/16 Septembre 2007.

Crop information systems : the next generation. Bruskiewich Richard, Davenport Guy, Senger Martin, Metz Thomas, Ruiz Manuel, Dereeper Alexis, Takeya Masaru, Hazekamp Tom, Rouard Mathieu, Simon Reinhard, Rojas E., Balaji Jayashree, Akintunde Akinnola, Costa Marcos, Bink Marco, Wanchana Samart, Mauleon Ramil P., Morris Jane, Farmer Andrew, Chandra S., Kikuchi S., Gaiji Samy, McLaren Graham, Van Hintum Theo. 2006. In : Plant Genomics European Meetings, Venice, 2006. Bologne : Ed. Avenue media, Résumé, 77. Plant Genomics European Meetings. 5, Venise, Italie, 11 Octobre 2006/14 Octobre 2006.

Web accessible tropical crop databases. Ruiz Manuel, Droc Gaëtan, Larmande Pierre, Perin Christophe, Rouard Mathieu, Courtois Brigitte. 2005. In : Abstracts of Plant and Animal Genomes XIIIth Conference, San Diego, CA (USA), January 15-19, 2005. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 13, San Diego, États-Unis, 15 Janvier 2005/19 Janvier 2005.

A new international cocoa genetic database. Ruiz Manuel, Rouard Mathieu, Turnbull Christ J., Orain R., Ford C.S., Raboin Louis-Marie, Lartaud Marc, Lanaud Claire, Clément Didier, Petithuguenin Philippe, Wilkinson M.J., Hadley P., Brown Spencer, Rosenquist Eric, Courtois Brigitte. 2005. In : 14th International Cocoa Research Conference. Proceedings : rumo a uma economia sustentavel do cacau - quais as estrategias para este fim ? = 14th International Cocoa Research Conference. Proccedings ; 14e Conférence internationale sur la recherche cacaoyère. Actes ; 14 Conferencia Internacional de Pesquisas em Cacau. Atas ; 14 Conferencia Internacional de Investigacion en Cacao. Actas : towards a sustainable cocoa economy - what strategies to this end ? ; vers une économie cacaoyère durable : quelles stratégies d'approche ? ; rumo a uma economia sustentavel do cacau - quais as estrategias para este fim ? ; hacia una economia sustentable del ca. CEPLAC, CRIG, MCB. Lagos : Cocoa Producers' Alliance, 33-41. ISBN 978-065-959-5 Conférence Internationale sur la Recherche Cacaoyère. 14, Accra, Ghana, 13 Octobre 2003/18 Octobre 2003.

Implementation of a cotton crop module to the TropGENE-DB information system. Ruiz Manuel, Rouard Mathieu, Courtois Brigitte, Nguyen Trung-Bieu, Lacape Jean-Marc. 2004. In : 4th International Cotton Genome Intitiative ICGI-2004 Workshop. Book of abstracts, October 10-13, 2004, Hyderabad, India. s.l. : s.n., Résumé, 159. International Cotton Genome Initiative Workshop. 4, Hyderabad, Inde, 10 Octobre 2004/13 Octobre 2004.

TropGENE-DB, a multi-tropical crop formation system. Ruiz Manuel, Rouard Mathieu, Raboin Louis-Marie, Lartaud Marc, Lagoda Pierre, Courtois Brigitte. 2004. Nucleic Acids Research, 32, D364-D367