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Journal article

Detection of significant SNP associated with production and oil quality traits in interspecific oil palm hybrids using RARSeq. Astorkia Maider, Hernandez Mónica, Bocs Stéphanie, Ponce Kevin, León Olga, Morales Shone, Quezada Nathalie, Orellana Francisco, Wendra Fahni, Sembiring Zulhermana, Asmono Dwi, Ritter Enrique. 2020. Plant Science, 291:110366, 13 p.
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Transcriptional regulation of sorghum stem composition: Key players identified through co-expression gene network and comparative genomics analyses. Hennet Lauriane, Berger Angélique, Trabanco Noemi, Ricciuti Emeline, Dufayard Jean François, Bocs Stéphanie, Bastianelli Denis, Bonnal Laurent, Roques Sandrine, Rossini Laura, Luquet Delphine, Terrier Nancy, Pot David. 2020. Frontiers in Plant Science, 11:224, 29 p.
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Association mapping between candidate gene SNP and production and oil quality traits in interspecific oil palm hybrids. Astorkia Maider, Hernandez Mónica, Bocs Stéphanie, Lopez de Armentia Emma, Herran Ana, Ponce Kevin, León Olga, Morales Shone, Quezada Nathalie, Orellana Francisco, Wendra Fahni, Sembiring Zulhermana, Asmono Dwi, Ritter Enrique. 2019. Plants, 8 (10):377, 19 p.
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Transcriptome data from three endemic Myrtaceae species from New Caledonia displaying contrasting responses to myrtle rust (Austropuccinia psidii). Soewarto Julia, Hamelin Chantal, Bocs Stéphanie, Mournet Pierre, Vignes Hélène, Berger Angélique, Armero Villanueva Alix Augusto, Martin Guillaume, Dereeper Alexis, Sarah Gautier, Carriconde Fabian, Maggia Laurent. 2019. Data in Brief, 22 : pp. 794-811.
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Genetic effect in leaf and xylem transcriptome variations among Eucalyptus urophylla x grandis hybrids in field conditions. Vaillant Alexandre, Honvault Astrid, Bocs Stéphanie, Summo Marilyne, Makouanzi Garel, Vigneron Philippe, Bouvet Jean-Marc. 2018. Silvae Genetica, 67 (1) : pp. 57-65.
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Impact of Austropuccinia psidii in New Caledonia, a biodiversity hotspot. Soewarto Julia, Carriconde Fabian, Hugot N., Bocs Stéphanie, Hamelin Chantal, Maggia Laurent. 2018. Forest Pathology, 48 (2):e12402, 12 p.
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Ten steps to get started in Genome Assembly and Annotation. Dominguez del Angel Victoria, Hjerde Erik, Sterck Lieven, Capella-Gutierrez Salvadors, Notredame Cederic, Vinnere Pettersson Olga, Amselem Joelle, Bouri Laurent, Bocs Stéphanie, Klopp Christophe, Gibrat Jean-François, Vlasova Anna, Leskosek Brane L., Soler Lucile, Binzer-Panchal Mahesh, Lantz Henrik. 2018. F1000Research, 7:148
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Genomic preselection with genotyping-bysequencing increases performance of commercial oil palm hybrid crosses. Cros David, Bocs Stéphanie, Riou Virginie, Ortega Abboud Enrique, Tisne Sébastien, Argout Xavier, Pomies Virginie, Nodichao Leifi, Lubis Zulkifli, Cochard Benoît, Durand-Gasselin Tristan. 2017. BMC Genomics, 18:839, 17 p.
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The genome draft of coconut (Cocos nucifera). Xiao Yong, Xu Pengwei, Fan Haikuo, Baudouin Luc, Xia Wei, Bocs Stéphanie, Xu Junyang, Li Qiong, Guo Anping, Zhou Lixia, Li Jing, Wu Yi, Ma Zilong, Armero Villanueva Alix Augusto, Issali Auguste Emmanuel, Liu Na, Peng Ming, Yang Yaodong. 2017. GigaScience, 6 (11), 11 p.
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The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Guignon Valentin, Hueber Yann, Rouard Mathieu, Bocs Stéphanie, Couvin David, De Lamotte Frédéric, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Gkanogiannis Anestis, Hamelin Chantal, Larivière Delphine, Martin Guillaume, Ortega Enrique, Pitollat Bertrand, Pointet Stéphanie, Ruiz Manuel, Gautier Sarah, Summo Marilyne, This Dominique, Ravel Sébastien, Larmande Pierre, Monat Cécile, Sabot François, Tando Ndomassi, Tranchant-Dubreuil Christine, Sempere Guilhem, Dereeper Alexis. 2016. Current Plant Biology, 7-8 : pp. 6-9.
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The coffee genome hub: a resource for coffee genomes. Dereeper Alexis, Bocs Stéphanie, Rouard Mathieu, Guignon Valentin, Ravel Sébastien, Tranchant-Dubreuil Christine, Poncet Valérie, Garsmeur Olivier, Lashermes Philippe, Droc Gaëtan. 2015. Nucleic Acids Research, 43 (D1), D1028-D1035
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Expansion of banana (Musa acuminata) gene families involved in ethylene biosynthesis and signalling after lineage-specific whole-genome duplications. Jourda Cyril, Cardi Céline, Mbéguié-A-Mbéguié Didier, Bocs Stéphanie, Garsmeur Olivier, D'Hont Angélique, Yahiaoui Nabila. 2014. New Phytologist, 202 (3) : pp. 986-1000.
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The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Denoeud France, Carretero-Paulet Lorenzo, Dereeper Alexis, Droc Gaëtan, Guyot Romain, Pietrella Marco, Chunfang Zheng, Alberti Adriana, Anthony François, Aprea Giuseppe, Aury Jean-Marc, Bento Pascal, Bernard Maria, Bocs Stéphanie, Campa Claudine, Cenci Alberto, Combes Marie-Christine, Crouzillat Dominique, Da Silva Corinne, Daddiego Loretta, De Bellis Fabien, Dussert Stéphane, Garsmeur Olivier, Gayraud Thomas, Guignon Valentin, Jahn Katharina, Jamilloux Véronique, Joët Thierry, Labadie Karine, Tianying Lan, Leclercq Julie, Lepelley Maud, Leroy Thierry, Lei-Ting Li, Librado Pablo, Lopez Loredana, Muñoz Adriana, Noël Benjamin, Pallavicini Alberto, Perrotta Gaetano, Poncet Valérie, Pot David, Priyono, Rigoreau Michel, Rouard Mathieu, Rozas Julio, Tranchant-Dubreuil Christine, VanBuren Robert, Qiong Zhang, Andrade Alan A., Argout Xavier, Bertrand Benoît, De Kochko Alexandre, Graziosi Giorgio, Henry Robert, Jayarama, Ming Ray, Nagai Chifumi, Rounsley Steve, Sankoff David, Giuliano Giovanni, Albert Victor A., Wincker Patrick, Lashermes Philippe. 2014. Science, 345 (6201) : pp. 1181-1184.
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Three infectious viral species lying in wait in the banana genome. Chabannes Matthieu, Baurens Franc-Christophe, Duroy Pierre-Olivier, Bocs Stéphanie, Vernerey Marie-Stéphanie, Rodier-Goud Marguerite, Barbe Valérie, Gayral Philippe, Iskra Caruana Marie-Line. 2013. Journal of Virology, 87 (15) : pp. 8624-8637.
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The banana genome hub. Droc Gaëtan, Larivière Delphine, Guignon Valentin, Yahiaoui Nabila, This Dominique, Garsmeur Olivier, Dereeper Alexis, Hamelin Chantal, Argout Xavier, Dufayard Jean-François, Lengellé Juliette, Baurens Franc-Christophe, Cenci Alberto, Pitollat Bertrand, D'Hont Angélique, Ruiz Manuel, Rouard Mathieu, Bocs Stéphanie. 2013. Database, 2013 (bat035), 14 p.
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Chado Controller : Advanced annotation management with a community annotation system. Guignon Valentin, Droc Gaëtan, Alaux Michael, Baurens Franc-Christophe, Garsmeur Olivier, Poiron Claire, Carver Timothy L.W., Rouard Mathieu, Bocs Stéphanie. 2012. Bioinformatics, 28 (7) : pp. 1054-1056.
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The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. D'Hont Angélique, Denoeud France, Aury Jean-Marc, Baurens Franc-Christophe, Carreel Françoise, Garsmeur Olivier, Noël Benjamin, Bocs Stéphanie, Droc Gaëtan, Rouard Mathieu, Da Silva Corinne, Jabbari Kamel, Cardi Céline, Poulain Julie, Souquet Marlène, Labadie Karine, Jourda Cyril, Lengellé Juliette, Rodier-Goud Marguerite, Alberti Adriana, Bernard Maria, Correa Margot, Ayyampalayam Saravanaraj, Mckain Michael R, Leebens-Mack Jim, Burgess Diane, Freeling Mike, Mbéguié-A-Mbéguié Didier, Chabannes Matthieu, Wicker Thomas, Panaud Olivier, Barbosa Jose, Hribova Eva, Heslop Harrison Pat, Habas Rémy, Rivallan Ronan, François Philippe, Poiron Claire, Kilian Andrzej, Burthia Dheema, Jenny Christophe, Bakry Frédéric, Brown Spencer, Guignon Valentin, Kema Gert H.J., Dita Miguel A., Waalwijk Cees, Joseph Steeve, Dievart Anne, Jaillon Olivier, Leclercq Julie, Argout Xavier, Lyons Eric, Almeida Ana, Jeridi Mouna, Dolezel Jaroslav, Roux Nicolas, Risterucci Ange-Marie, Weissenbach Jean, Ruiz Manuel, Glaszmann Jean-Christophe, Quetier Francis, Yahiaoui Nabila, Wincker Patrick. 2012. Nature, 488 (7410) : pp. 213-217.
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High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane. Garsmeur Olivier, Charron Carine, Bocs Stéphanie, Jouffe Vincent, Samain Sylvie, Couloux Arnaud, Droc Gaëtan, Zini Cyrille, Glaszmann Jean-Christophe, Van Sluys Marie-Anne, D'Hont Angélique. 2011. New Phytologist, 189 (2) : pp. 629-642.
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The genome of Theobroma cacao. Argout Xavier, Salse Jérôme, Aury Jean-Marc, Guiltinan Mark J., Droc Gaëtan, Gouzy Jérôme, Allègre Mathilde, Chaparro Christian, Legavre Thierry, Maximova Siela N., Abrouk Michael, Murat Florent, Fouet Olivier, Poulain Julie, Ruiz Manuel, Roguet Yolande, Rodier-Goud Marguerite, Barbosa-Neto Jose Fernandes, Sabot François, Kudrna Dave, Ammiraju Jetty Siva S., Schuster Stephan C., Carlson John E., Sallet Erika, Schiex Thomas, Dievart Anne, Kramer Melissa, Gelley Laura, Shi Zi, Bérard Aurélie, Viot Christopher, Boccara Michel, Risterucci Ange-Marie, Guignon Valentin, Sabau Xavier, Axtell Michael J., Ma Zhaorong, Zhang Yufan, Brown Spencer, Bourge Mickael, Golser Wolfgang, Song Xiang, Clément Didier, Rivallan Ronan, Tahi G.Mathias, Akaza Joseph Moroh, Pitollat Bertrand, Gramacho Karina Peres, D'Hont Angélique, Brunel Dominique, Infante Diogenes, Kébé Ismael S., Costet Pierre, Wing Rod A., Mc Combie William Richard, Guiderdoni Emmanuel, Quetier Francis, Panaud Olivier, Wincker Patrick, Bocs Stéphanie, Lanaud Claire. 2011. Nature Genetics, 43 (2) : pp. 101-108.
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The sugarcane genome challenge: Strategies for sequencing a highly complex genome. Mendes Souza Glaucia, Berges Hélène, Bocs Stéphanie, Casu Rosanne, D'Hont Angélique, Ferreira João Eduardo, Henry Robert, Ming Ray, Potier Bernard, Van Sluys Marie-Anne, Vincentz Michel, Paterson Andrew H.. 2011. Tropical Plant Biology, 3 (3-4) : pp. 145-156.
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Mechanisms of haplotype divergence at the RGA08 nucleotide-binding leucine-rich repeat gene locus in wild banana (Musa balbisiana). Baurens Franc-Christophe, Bocs Stéphanie, Rouard Mathieu, Matsumoto Takashi, Miller Roberto Neil Gerard, Rodier-Goud Marguerite, Mbéguié-A-Mbéguié Didier, Yahiaoui Nabila. 2010. BMC Plant Biology, 10 (149), 16 p.
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"Candidatus cloacamonas acidaminovorans": Genome sequence reconstruction provides a first glimpse of a new bacterial division. Pelletier Eric, Kreimeyer Annett, Bocs Stéphanie, Rouy Zoe, Gyapay Gabor, Chouari Rakia, Rivière Delphine, Ganesan Akila, Daegelen Patrick, Sghir Abdelghani, Cohen Georges N., Medigue Claudine, Weissenbach Jean, Le Paslier Denis. 2008. Journal of Bacteriology, 190 (7) : pp. 2572-2579.
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Book chapter

Role of bioinformatics as a tool. Rouard Mathieu, Carpentier Sébastien Christian, Bocs Stéphanie, Droc Gaëtan, Argout Xavier, Roux Nicolas, Ruiz Manuel. 2012. In : Genetics, genomics and breeding of bananas. Pillay Michael (ed.), Ude George (ed.), Kole Chittaranjan (ed.). Enfield : Science Publishers, pp. 194-216. (Genetics, genomics and breeding of crop plants) ISBN 978-1-57808-788-4
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Guest paper

The South Green Bioinformatics platform, a comprehensive resource for crop genomics. Ruiz Manuel, Dereeper Alexis, Droc Gaëtan, Sarah Gautier, Tranchant-Dubreuil Christine, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, De Lamotte Frédéric, Larmande Pierre, Sabot François, Sempere Guilhem, Summo Marilyne, Pitollat Bertrand, This Dominique, Bocs Stéphanie, Hueber Yann, El Hassouni Nordine, Martin Guillaume, Gkanogiannis Anestis, Ravel Sébastien, Monat Cécile, Tando Ndomassi, Rouard Mathieu. 2017. In : Proceedings X-Meeting 2017. s.l. : s.n., 1 p. International Conference of the AB3. 13, São Pedro, Brésil, 4 October 2017/6 October 2017.
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Paper with proceedings

South Green, une plateforme de bioinformatique tournée vers l'agriculture dans les pays du sud. Ravel Sébastien, Bocs Stéphanie, Brousseau Louise, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, Larmande Pierre, Mahé Frédéric, Martin Guillaume, Orjuela-Bouniol Julie, Pitollat Bertrand, Rouard Mathieu, Ruiz Manuel, Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, Tando Ndomassi, Tranchant-Dubreuil Christine. 2018. In : JOBIM 2018 Abstracts. SFBI, GdR BiM, IFB, AMU, INSERM, CNRS. Marseille : SFBI, pp. 418-420. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2018), Marseille, 3 July 2018/6 July 2018.
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Comparative transcriptomics among wild and modern cotton. [P0573]. Boldt Alberto, Giband Marc, Lacape Jean-Marc, Bocs Stéphanie. 2017. In : Proceedings Plant and Animal Genome XXV Conference. San Diego : PAG, 1 p. Plant and Animal Genome Conference. 25, San Diego, États-Unis, 14 January 2017/18 January 2017.
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The first step of ABA perception and signal transduction in coffee: evolutionary and expression of PYR/PYL/RCARs, PP2Cs and SNRK2s genes in C. canephora under drought. Cotta Michelle G., Rego Erica C.S., Bocs Stéphanie, Costa Tatiana S., Dufayard Jean François, This Dominique, Marraccini Pierre, Andrade Alan A.. 2016. In : The 26th International Conference on Coffee Science (ASIC): Kunming 2016. ASIC. Kunming : ASIC, Résumé, p. 187. International Conference on Coffee Science. 26, Kunming, Chine, 13 November 2016/19 November 2016.
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Application du système GenFam à la réponse au stress des plantes : intégration de l'identification d'éléments cis spécifiques. Lorenzo Jonathan, Larivière Delphine, Droc Gaëtan, Dufayard Jean François, This Dominique, Bocs Stéphanie. 2015. In : Journées Ouvertes de Biologie, Informatique et Mathématiques. Leroy Philippe (ed.), Peyret Pierre (ed.). Université d'Auvergne. Clermont-Ferrand : Université d’Auvergne-INRA, Résumé, p. 95. ISBN 2-7380-1377-5 JOBIM 2015. 16, Clermont-Ferrand, France, 6 July 2015/9 July 2015.
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Estudo das famílias gênicas CcPYL, CcPP2C e CcSnRK2: Componentes centrais na via aba-dependente para a resposta ao déficit hídrico em Coffea canephora. Guitton Cotta Michelle, Bocs Stéphanie, Silva Rêgo Erica Cristina, Santos Costa Tatiana, De Aquino Oliveira Sinara, De Araújo Carneiro Fernanda, This Dominique, Marraccini Pierre, Carvalho Andrade Alan. 2015. In : Anais do IX Simpósio de Pesquisa dos Cafés do Brasil. Consórcio Pesquisa Café. Curitiba : Consórcio Pesquisa Café, 6 p. Simpósio de Pesquisa dos Cafés do Brasil. 9, Curitiba, Brésil, 24 June 2015/26 June 2015.
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Molecular mechanisms in the first step of ABA-mediated response to drought in Coffea canephora clones. Cotta Michelle G., Marraccini Pierre, This Dominique, Leroy Thierry, Bocs Stéphanie, Droc Gaëtan, Dufayard Jean François, Dereeper Alexis, Lashermes Philippe, Andrade Alan Carvalho. 2015. In : Proceedings of the 25th International Conference on Coffee Science. ASIC. Paris : ASIC, pp. 42-50. ISBN 978-2-900212-24-0 International Conference on Coffee Science. 25, Armenia, Colombie, 8 September 2014/13 September 2014.
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South Green bioinformatics platform: Update 2015. Armero A., Baurens Franc-Christophe, Bocs Stéphanie, Breil A., De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Garsmeur Olivier, Guignon Valentin, Hamelin Chantal, Hueber Yann, Kougbeadjo Ayite, Larivière Delphine, Larmande Pierre, Lorenzo Jonathan, Martin Guillaume, Monat Cécile, Ndomassi T., Ortega Abboud Enrique, Pitollat Bertrand, Ravel Sébastien, Ranwez Vincent, Rouard Mathieu, Ruiz E., Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, This Dominique, Tranchant-Dubreuil Christine, Vallier Félix. 2015. In : Plant Genomics Congress. Global Engage. Londres : Global Engage, p. 51. Plant Genomics Congress. 3, Londres, Royaume-Uni, 11 May 2015/12 May 2015.
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Poster

The South Green Genome Hubs. Droc Gaëtan, Argout Xavier, Bocs Stéphanie, Comte Aurore, Dereeper Alexis, Dufayard Jean François, Garsmeur Olivier, Gkanogiannis Anestis, Guignon Valentin, Hamelin Chantal, Lopez David, Oubda Nicolas, Martin Guillaume, Ravel Sébastien, Ruiz Manuel, Summo Marilyne, Thomas Coline, Tranchant-Dubreuil Christine, Rouard Mathieu. 2020. . SFBI, IFB, GDR-BIM. Montpellier : SFBI, 1 p. Journées ouvertes de biologie, informatique et mathématique (JOBIM 2020), Montpellier, France, 30 June 2020/3 July 2020.
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South Green bioinformatic resources for tropical and Mediterranean crops. Rouard Mathieu, Bocs Stéphanie, Breton Catherine, Comte Aurore, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, Larmande Pierre, Lopez David, Mahe Frédéric, Martin Guillaume, Orjuela-Bouniol Julie, Pitollat Bertrand, Ravel Sébastien, Ruiz Manuel, Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, Tando Ndomassi, Tranchant-Dubreuil Christine. 2020. . SFBI, IFB, GDR-BIM. Montpellier : SFBI, 1 p. Journées ouvertes de biologie, informatique et mathématique (JOBIM 2020). 20, Montpellier, France, 30 June 2020/3 July 2020.
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South Green bioinformatics platform : Plateforme collaborative de bioinformatique verte héraultaise. Bocs Stéphanie, Couvin David, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Gkanogiannis Anestis, Guignon Valentin, Hamelin Chantal, Hueber Yann, Larivière Delphine, Larmande Pierre, Martin Guillaume, Monat Cécile, Ortega Abboud Enrique, Pitollat Bertrand, Pointet Stéphanie, Ravel Sébastien, Rouard Mathieu, This Patrice, Tranchant-Dubreuil Christine. 2017. . Montpellier : CIRAD, 1 poster Amphithéâtre "Patrimoine Numérique Scientifique", Montpellier, France, 20 February 2017/20 February 2017.
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Improving transcriptome de novo assembly by using a reference genome of a related species: translational genomics from oil palm to coconut. Armero Villanueva Alix Augusto, Bocs Stéphanie, Baudouin Luc, This Dominique. 2015. In : Plant Genome Evolution 2015. Elsevier. Amsterdam : Elsevier, 1 p. Plant Genome Evolution, Amsterdam, Pays-Bas, 6 September 2015/8 September 2015.
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Banana genome hub. Droc Gaëtan, Larivière Delphine, Guignon Valentin, Yahiaoui Nabila, This Dominique, Garsmeur Olivier, Dereeper Alexis, Hamelin Chantal, Argout Xavier, Dufayard Jean-François, Lengellé Juliette, Baurens Franc-Christophe, Cenci Alberto, Pitollat Bertrand, D'Hont Angélique, Ruiz Manuel, Rouard Mathieu, Bocs Stéphanie. 2013. In : 6th International Biocuration Conference, Cambridge, Royaume-Uni, april 07-10 2013. s.l. : s.n., 1 p. International Biocuration Conference. 6, Cambridge, Royaume-Uni, 7 April 2013/10 April 2013.
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Identification and characterization of genes involved in ABA perception and signal transduction in Coffea spp : S02P13. Cotta Michelle G., Marraccini Pierre, This Dominique, Leroy Thierry, Bocs Stéphanie, Dereeper Alexis, Lashermes Philippe, Andrade Alan Carvalho. 2013. In : Biotic and Abiotic Stress Tolerance in Plants: the Challenge for the 21st Century : Book of abstracts of the CIBA 2013. Brasileiro Ana Christina Miranda (ed.), Fortes Ferreira Claudia (ed.), Fernandez Diana (ed.), Micheli Fabienne (ed.), Coelho Filho M.A. (ed.), Marraccini Pierre (ed.). EMBRAPA, UESC, CIRAD, IRD. Brasilia : EMBRAPA, Résumé, p. 50. Workshop on Biotic and Abiotic Stress Tolerance in Plants: the Challenge for the 21st Century, Ilhéus-Bahia, Brésil, 6 November 2013/8 November 2013.
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The three infectious Banana streak virus species present in the banana genome of Pisang Klutuk Wulung (PKW) are allelic. Chabannes Matthieu, Baurens Franc-Christophe, Duroy Pierre-Olivier, Bocs Stéphanie, Vernerey Marie-Stéphanie, Rodier-Goud Marguerite, Barbe Valérie, Gayral Philippe, Iskra Caruana Marie-Line. 2013. In : Polyploïde et cytogénétique, Rennes, France, 16-17 mai 2013. s.l. : s.n., 1 p. Polyploïdie et cytogénétique, Rennes, France, 16 May 2013/17 May 2013.
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Sequencing the Cocoa criollo genome : An international initiative of the ICGS (International Cocoa Genome Sequencing) consortium (P050). Argout Xavier, Salse Jérôme, Aury Jean-Marc, Guiltinan Mark J., Droc Gaëtan, Gouzy Jérôme, Allègre Mathilde, Chaparro Christian, Legavre Thierry, Maximova Siela N., Abrouk Michael, Murat Florent, Fouet Olivier, Poulain Julie, Ruiz Manuel, Roguet Yolande, Rodier-Goud Marguerite, Barbosa-Neto Jose Fernandes, Sabot François, Kudrna Dave, Ammiraju Jetty Siva S., Schuster Stephan C., Carlson John E., Sallet Erika, Schiex Thomas, Dievart Anne, Kramer Melissa, Gelley Laura, Shi Zi, Bérard Aurélie, Viot Christopher, Boccara Michel, Mournet Pierre, Risterucci Ange-Marie, Guignon Valentin, Sabau Xavier, Axtell Michael J., Ma Zhaorong, Zhang Yufan, Brown Spencer, Bourge Mickael, Golser Wolfgang, Song Xiang, Clément Didier, Rivallan Ronan, Tahi G.Mathias, Akaza Joseph Moroh, Pittolat Bertrand, Gramacho Karina Peres, D'Hont Angélique, Brunel Dominique, Infante Diogenes, Kébé Ismael S., Costet Pierre, Wing Rod A., Mc Combie William Richard, Guiderdoni Emmanuel, Quetier Francis, Panaud Olivier, Wincker Patrick, Bocs Stéphanie, Lanaud Claire. 2011. In : Abstracts of Plant and Animal Genomes XIXth Conference, San Diego, CA (USA), January 15-19, 2011. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 19, San Diego, États-Unis, 15 January 2011/19 January 2011.
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GNPAnnot Project 2010. Droc Gaëtan, Guignon Valentin, Baurens Franc-Christophe, Jouffe Vincent, Poiron Claire, Lengellé Juliette, Garsmeur Olivier, Rouard Mathieu, Bocs Stéphanie, Alaux Michael, Brigitte Leatitia, Steinbach Samson Delphine, Kimmel Erik, Pommier Cyril, Luyten Isabelle, Terrier Nancy, Leroy Philippe, Quesneville Hadi, Amselem Joelle, Brault Baptiste, Simon Adeline, Dominguez del Angel Victoria, Hoede Claire, Fillinger Sabine, Meyer Michel, Rouxel Thierry, Lebrun Marc-Henri, Legeai Fabrice, Kerbellec Goulven, Collin Olivier, Gauthier Jean-Pierre, D'Alençon Emmanuelle, Cousserans François, Fournier Philippe, Tagu Denis. 2010. In : Séminaire Génoplante, Pont-Royal en Provence, France, 29-31 mars 2010. s.l. : s.n., 1 p. Séminaire Génoplante, Pont-Royal Provence, France, 29 March 2010/31 March 2010.
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Paper without proceedings

Facing the challenges of coconut genetic improvement: the coconut genome [W736]. Baudouin Luc, Armero Villanueva Alix Augusto, Bocs Stéphanie, This Dominique, Issali Auguste Emmanuel, Yang Yaodong. 2018. In : Proceedings Plant and Animal Genome XXVI Conference. PAG. San Diego : PAG, Résumé, 1 p. Plant and Animal Genomes Conference. 26, San Diego, États-Unis, 13 January 2018/17 January 2018.
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Comparative genomics of gene families in relation with metabolic pathway for gene candidates highlighting. This Dominique (ed.), Dufayard Jean François (ed.), Bocs Stéphanie (ed.), Larivière Delphine, Couvin David. 2016. , Résumé, 1 p. Séminaire du Groupe de Travail en Génomique Comparative. 9, Lyon, France, 1 July 2016/1 July 2016.
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Updates on the Musa acuminata reference genome sequence [W074]. D'Hont Angélique, Martin Guillaume, Baurens Franc-Christophe, Droc Gaëtan, Cenci Alberto, Guignon Valentin, Ruas Max, Carreel Françoise, Kilian Andrzej, Aury Jean-Marc, Hastie Alex, Dolezel Jaroslav, Roux Nicolas, Bocs Stéphanie, Rouard Mathieu. 2015. In : Plant and Animal Genomes Conference XXIII Conference, San diego, United States, San Diego, United States, January 10-14, 2015. s.l. : s.n., Résumé Plant and Animal Genome Conference. 23, San Diego, États-Unis, 10 January 2015/14 January 2015.
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The Banana Genome Hub : [W079]. Droc Gaëtan, Larivière Delphine, Guignon Valentin, Yahiaoui Nabila, This Dominique, Garsmeur Olivier, Dereeper Alexis, Hamelin Chantal, Argout Xavier, Dufayard Jean-François, Lengellé Juliette, Baurens Franc-Christophe, Cenci Alberto, Pitollat Bertrand, D'Hont Angélique, Ruiz Manuel, Rouard Mathieu, Bocs Stéphanie. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 January 2014/15 January 2014.
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The Coffee Genome Hub : [W185]. Dereeper Alexis, Droc Gaëtan, Bocs Stéphanie, Ravel Sébastien, Guignon Valentin, This Dominique, Cotta Michelle G., Lashermes Philippe. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 January 2014/15 January 2014.
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Integrative system for gene family gathering and analysis in a context of crops stress response study : [P1050]. Larivière Delphine, Dufayard Jean-François, Bocs Stéphanie, This Dominique. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 January 2014/15 January 2014.
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Transposable elements in the robusta coffee genome (Coffea canephora) : [W187]. Bocs Stéphanie, Dereeper Alexis, Gayraud Thomas, Jamilloux Véronique, Lashermes Philippe, Guyot Romain. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 January 2014/15 January 2014.
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The early steps of drought response mediated by ABA: evolutionary and molecular mechanism of Coffea canephora PYR/PYL/RCAR receptors. Cotta Michelle G., Bocs Stéphanie, Rego Erica C.S., Costa Tatiana S., Aquino Sinara O., Carneiro Fernanda A, This Dominique, Marraccini Pierre, Andrade Alan Carvalho. 2014. In : 11th Solanaceae Conference: book of abstracts, Porto Seguro, Brazil, November 2-6, 2014. Embrapa, UESC, UFLA, Ciba. s.l. : s.n., Résumé, p. 170. Solanaceae Conference. 11, Porto Seguro, Brésil, 2 November 2014/6 November 2014.
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The repetitive landscape of the Robusta coffee genome. Guyot Romain, Chaparro Christian, Bocs Stéphanie, Dereeper Alexis, Jamilloux Véronique, Domingues Douglas S., Lashermes Philippe. 2014. In : 11th Solanaceae Conference: book of abstracts, Porto Seguro, Brazil, November 2-6, 2014. Embrapa, UESC, UFLA, Ciba. s.l. : s.n., Résumé, p. 52. Solanaceae Conference. 11, Porto Seguro, Brésil, 2 November 2014/6 November 2014.
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The south green bioinformatics platform : [P988]. Rouard Mathieu, Dereeper Alexis, Droc Gaëtan, Sarah Gautier, Dufayard Jean-François, Guignon Valentin, Hamelin Chantal, Homa Félix, De Lamotte Frédéric, Larmande Pierre, Larivière Delphine, Sabot François, Sempere Guilhem, Summo Marilyne, Pitollat Bertrand, Pointet Stéphanie, This Dominique, Bocs Stéphanie, Ruiz Manuel. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 January 2014/15 January 2014.
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GNPAnnot: a community annotation system applied to sugarcane sequences : W745. Garsmeur Olivier, Droc Gaëtan, Guignon Valentin, Charron Carine, D'Hont Angélique, Ruiz Manuel, Bocs Stéphanie. 2013. In : Plant and Animal Genome XXI conference, San Diego, USA, January 12-16 2013,. s.l. : s.n., Résumé, 1 p. Plant and Animal Genome conference. 21, San Diego, États-Unis, 12 January 2013/16 January 2013.
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Identificação e caracterização de genes associados à recepção e transdução do sinal de aba em Coffea sp : [n. 279]. Guitton Cotta Michelle, Marraccini Pierre, This Dominique, Leroy Thierry, Bocs Stéphanie, Dereeper Alexis, Lashermes Philippe, Carvalho Andrade Alan. 2013. In : VIII Simpósio de Pesquisa dos Cafés do Brasil, 25 a 28 de novembro de 2013, Salvador, Brasil. s.l. : s.n., 6 p. Simpósio de Pesquisa dos Cafés do Brasil. 8, Salvador, Brésil, 25 November 2013/28 November 2013.

Detailed analyses of 12 hom(oe)ologous chromosome segments in the highly polyploid sugarcane genome. Charron Carine, Hervouet Catherine, Garsmeur Olivier, Droc Gaëtan, Bocs Stéphanie, D'Hont Angélique. 2012. In : International Conference on Polyploidy, Hybridization, and Biodiversity ICPHB 2012, Prague, Czech Republic, 7-10 May 2012. s.l. : s.n., Résumé, 1 p. International Conference on Polyploidy, Hybridization and Biodiversity, Prague, République tchèque, 7 May 2012/10 May 2012.
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Evolutionary dynamics of hom(oe)ologous chromosome segments within the highly polyploid sugarcane genome. D'Hont Angélique, Charron Carine, Garsmeur Olivier, Hervouet Catherine, Droc Gaëtan, Bocs Stéphanie. 2012. In : International Symposium of New Paradigms of Sugarcane Research, Coimbatore, Inde October 15-18, 2012. s.l. : s.n., Résumé, 1 p. International Symposium on New Paradigms in Sugarcane Research, Coimbatore, Inde, 15 October 2012/18 October 2012.
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Genomics of an ancient sex chromosome in Tilapia. W633. Baroiller Jean-François, Soler Lucile, Bocs Stéphanie, Conte Matthew A., D'Hont Angélique, Kocher Thomas D., Ozouf-Costaz Catherine, D'Cotta Helena. 2012. In : Plant and Animal Genome XX conference, San Diego, USA, January 14-18 2012,. s.l. : s.n., Résumé, 1 p. Plant and Animal Genome conference. 20, San Diego, États-Unis, 14 January 2012/18 January 2012.
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Role of Galaxy in a bioinformatic plant breeding platform. Maillol Vincent, Bacilieri Roberto, Bocs Stéphanie, Boursiquot Jean-Michel, Carrier Gregory, Dereeper Alexis, Droc Gaëtan, Fleury Cécile, Larmande Pierre, Le Cunff Loïc, Péros Jean-Pierre, Pitollat Bertrand, Ruiz Manuel, Sarah Gautier, Sempere Guilhem, Summo Marilyne, This Patrice, Dufayard Jean-François. 2012. In : Galaxy Community Conference GCC2012, Chicago, Etats-Unis, July 25-27 2012. s.l. : s.n., Résumé, 1 p. Galaxy Community Conference, Chicago, États-Unis, 25 July 2012/27 July 2012.
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Deciphering the genome structure of Theobroma cacao (W107). Argout Xavier, Salse Jérôme, Aury Jean-Marc, Guiltinan Mark J., Droc Gaëtan, Gouzy Jérôme, Allègre Mathilde, Chaparro Christian, Legavre Thierry, Maximova Siela N., Abrouk Michael, Murat Florent, Fouet Olivier, Poulain Julie, Ruiz Manuel, Roguet Yolande, Rodier-Goud Marguerite, Barbosa-Neto Jose Fernandes, Sabot François, Kudrna Dave, Ammiraju Jetty Siva S., Schuster Stephan C., Carlson John E., Sallet Erika, Schiex Thomas, Dievart Anne, Kramer Melissa, Gelley Laura, Shi Zi, Bérard Aurélie, Viot Christopher, Boccara Michel, Risterucci Ange-Marie, Guignon Valentin, Sabau Xavier, Axtell Michael J., Ma Zhaorong, Zhang Yufan, Brown Spencer, Bourge Mickael, Golser Wolfgang, Song Xiang, Clément Didier, Rivallan Ronan, Tahi G.Mathias, Akaza Joseph Moroh, Pittolat Bertrand, Gramacho Karina Peres, D'Hont Angélique, Brunel Dominique, Infante Diogenes, Kébé Ismael S., Costet Pierre, Wing Rod A., Mc Combie William Richard, Guiderdoni Emmanuel, Quetier Francis, Panaud Olivier, Wincker Patrick, Bocs Stéphanie, Lanaud Claire. 2011. In : Abstracts of Plant and Animal Genomes XIXth Conference, San Diego, CA (USA), January 15-19, 2011. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 19, San Diego, États-Unis, 15 January 2011/19 January 2011.
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GNPAnnot community annotation system applied to sugarcane bac clone sequences (W572). Guignon Valentin, Droc Gaëtan, Garsmeur Olivier, Charron Carine, D'Hont Angélique, Bocs Stéphanie. 2011. In : Abstracts of Plant and Animal Genomes XIXth Conference, San Diego, CA (USA), January 15-19, 2011. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 19, San Diego, États-Unis, 15 January 2011/19 January 2011.
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Genome annotation and report system : an integrated system for structural and functional genome annotation (P800). Amselem Joelle, Alaux Michael, Brault Baptiste, Lapalu Nicolas, Legeai Fabrice, Alfama Françoise, Brigitte Leatitia, Choisne Nathalie, Keliet Aminath, Kimmel Erik, Kreplak Jonathan, Luyten Isabelle, Pommier Cyril, Reboux Sébastien, Bocs Stéphanie, Steinbach Samson Delphine, Lebrun Marc-Henri, Quesneville Hadi. 2011. In : Abstracts of Plant and Animal Genomes XIXth Conference, San Diego, CA (USA), January 15-19, 2011. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 19, San Diego, États-Unis, 15 January 2011/19 January 2011.
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High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane. Charron Carine, Garsmeur Olivier, Bocs Stéphanie, Droc Gaëtan, Van Sluys Marie-Anne, D'Hont Angélique. 2011. In : 9th Plant Genomics European Meetings (Plant GEM), May 04-07, 2011, Istanbul, Turkey. Sabanci University. s.l. : s.n., Résumé, 1 p. Plant Genomics European Meetings. 9, Istanbul, Turquie, 4 May 2011/7 May 2011.
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High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane (W315). D'Hont Angélique, Garsmeur Olivier (collab.), Charron Carine (collab.), Zini Cyrille (collab.), Bocs Stéphanie (collab.), Jouffe Vincent (collab.), Samain Sylvie (collab.). 2011. In : Abstracts of Plant and Animal Genomes XIXth Conference, San Diego, CA (USA), January 15-19, 2011. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 19, San Diego, États-Unis, 15 January 2011/19 January 2011.

Chado Controller a database monitor for confidentiality, quality and tracking of genomic annotations. Guignon Valentin, Droc Gaëtan, Poiron Claire, Lengellé Juliette, Garsmeur Olivier, Baurens Franc-Christophe, Bocs Stéphanie. 2010. In : Journées ouvertes biologie informatique mathématique (JOBIM), Montpellier, France, 07-09 septembre 2010. s.l. : s.n., Résumé, 1 p. Journées ouvertes biologie informatique mathématique, Montpellier, France, 7 September 2010/9 September 2010.
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Comparison of seven homoeologous haplotypes (BAC) within the high polyploid sugarcane genome : [Abstract W604]. Charron Carine, Garsmeur Olivier, Jouffe Vincent, Bocs Stéphanie, Samain Sylvie, Couloux Arnaud, Droc Gaëtan, Glaszmann Jean-Christophe, Van Sluys Marie-Anne, D'Hont Angélique. 2010. In : Abstracts of Plant and Animal Genomes XVIIIth Conference, San Diego, CA (USA), January 09-13, 2010. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 18, San Diego, États-Unis, 9 January 2010/13 January 2010.
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GNPAnnot Community Annotation System (CAS) : système d'annotation communautaire de génomes de plantes, d'insectes et champignons. Bocs Stéphanie. 2010. In : JOBIM 2010, Journée satellite Annotations des génomes et génomique comparée, Sept 10th, 2010, Montpellier. s.l. : s.n., Diaporama, (37 vues) Journées ouvertes biologie informatique mathématique, Montpellier, France, 7 September 2010/9 September 2010.
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Towards a bioinformatics platform for the Musa research community : [Abstract W076]. Rouard Mathieu, Argout Xavier, Bocs Stéphanie, Conte Matthieu, Droc Gaëtan, Guignon Valentin, Hamelin Chantal, Roux Nicolas, Ruiz Manuel. 2010. In : Abstracts of Plant and Animal Genomes XVIIIth Conference, San Diego, CA (USA), January 09-13, 2010. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 18, San Diego, États-Unis, 9 January 2010/13 January 2010.
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This list was generated on Sun Sep 27 10:13:53 2020 CEST.