Agritrop
Home

Browse by CIRAD authors

Export as [feed] RSS 1.0 [feed] RSS 2.0
Group by: Item Type | Date | No Grouping
Number of items: 119.

Journal article

Comprehensive classification of the plant non-specific lipid transfer protein superfamily towards its sequence–structure–function analysis. Fleury Cécile, Gracy Jérôme, Gautier Marie-Françoise, Pons Jean-Luc, Dufayard Jean François, Labesse Gilles, Ruiz Manuel, De Lamotte Frédéric. 2019. PeerJ, 7:e7504, 34 p.
[img]
Preview

Rice Galaxy: An open resource for plant science. Juanillas Venice, Dereeper Alexis, Beaume Nicolas, Droc Gaëtan, Dizon Joshua, Mendoza John Robert, Perdon Jon Peter, Mansueto Locedie, Triplett Lindsay, Lang Jillian M., Zhou Gabriel, Ratharanjan Kunalan, Plale Beth, Haga Jason, Leach Jan E., Ruiz Manuel, Thomson Michael J., Alexandrov Nickolai, Larmande Pierre, Kretzschmar Tobias, Mauleon Ramil P.. 2019. GigaScience, 8 (5) : pp. 1-14.
[img]
Preview

Agronomic linked data (AgroLD): A knowledge-based system to enable integrative biology in agronomy. Venkatesan Aravind, Tagny Ngompé Gildas, El Hassouni Nordine, Chentli Imene, Guignon Valentin, Jonquet Clément, Ruiz Manuel, Larmande Pierre. 2018. PloS One, 13 (11):e0198270, 17 p.
[img]
Preview

Domestication rewired gene expression and nucleotide diversity patterns in tomato. Sauvage Christopher, Rau Andrea, Aichholz Charlotte, Chadoeuf Joël, Sarah Gautier, Ruiz Manuel, Santoni Sylvain, Causse Mathilde, David Jacques, Glemin Sylvain. 2017. Plant Journal, 91 (4) : pp. 631-645.
[img] [img]

Evolutionary forces affecting synonymous variations in plant genomes. Clément Yves, Sarah Gautier, Holtz Yan, Homa Félix, Pointet Stéphanie, Contreras Sandy, Nabholz Benoit, Sabot François, Sauné Laure, Ardisson Morgane, Bacilieri Roberto, Besnard Guillaume, Berger Angélique, Cardi Céline, De Bellis Fabien, Fouet Olivier, Jourda Cyril, Khadari Bouchaib, Lanaud Claire, Leroy Thierry, Pot David, Sauvage Christopher, Scarcelli Nora, Tregear James, Vigouroux Yves, Yahiaoui Nabila, Ruiz Manuel, Santoni Sylvain, Labouisse Jean-Pierre, Pham Jean Louis, David Jacques, Glemin Sylvain. 2017. PLoS Genetics, 13 (5):e1006799, 28 p.
[img]
Preview

A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives. Sarah Gautier, Homa Félix, Pointet Stéphanie, Contreras Sandy, Sabot François, Nabholz Benoit, Santoni Sylvain, Sauné Laure, Ardisson Morgane, Chantret Nathalie, Sauvage Christopher, Tregear James, Jourda Cyril, Pot David, Vigouroux Yves, Chaïr Hâna, Scarcelli Nora, Billot Claire, Yahiaoui Nabila, Bacilieri Roberto, Khadari Bouchaib, Boccara Michel, Barnaud Adeline, Péros Jean-Pierre, Labouisse Jean-Pierre, Pham Jean Louis, David Jacques, Glemin Sylvain, Ruiz Manuel. 2017. Molecular Ecology Resources, 17 (3) : pp. 565-580.
[img] [img]

Gigwa—Genotype investigator for genome-wide analyses. Sempere Guilhem, Philippe Florian, Dereeper Alexis, Ruiz Manuel, Sarah Gautier, Larmande Pierre. 2016. GigaScience, 5 (25), 9 p.
[img]
Preview
[img]
Preview

La diversité génétique des plantes cultivées à l'heure de l'informatique génétique à haut débit: génomique comparative de la domestication. David Jacques, Glemin Sylvain, Sarah Gautier, Nabholz Benoit, Sabot François, Holtz Yan, Homa Félix, Pointet Stéphanie, Contreras Sandy, Sauné Laure, Ardisson Morgane, Bacilieri Roberto, Khadari Bouchaib, Lanaud Claire, Pot David, Sauvage Christopher, Scarcelli Nora, Tregear James, Vigouroux Yves, Yahiaoui Nabila, Ruiz Manuel, Santoni Sylvain, Labouisse Jean-Pierre, Pham Jean Louis. 2016. Le Sélectionneur Français (67) : pp. 3-13.
[img]
Preview

The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Guignon Valentin, Hueber Yann, Rouard Mathieu, Bocs Stéphanie, Couvin David, De Lamotte Frédéric, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Gkanogiannis Anestis, Hamelin Chantal, Larivière Delphine, Martin Guillaume, Ortega Enrique, Pitollat Bertrand, Pointet Stéphanie, Ruiz Manuel, Gautier Sarah, Summo Marilyne, This Dominique, Ravel Sébastien, Larmande Pierre, Monat Cécile, Sabot François, Tando Ndomassi, Tranchant-Dubreuil Christine, Sempere Guilhem, Dereeper Alexis. 2016. Current Plant Biology, 7-8 : pp. 6-9.
[img]
Preview

Une architecture orientée services pour l'extraction de connaissances dans la base de données liées AgroLD. Tagny Ngompé Gildas, Venkatesan Aravind, El Hassouni Nordine, Ruiz Manuel, Larmande Pierre. 2016. Ingénierie des Systèmes d'Information, 21 (5-6), Le web de données : publication, liage et capitalisation : pp. 133-157.
[img]

SNiPlay3: A web-based application for exploration and large scale analyses of genomic variations. Dereeper Alexis, Homa Félix, Andres Gwendoline, Sempere Guilhem, Sarah Gautier, Hueber Yann, Dufayard Jean François, Ruiz Manuel. 2015. Nucleic Acids Research, 43 (W1) : W295-W300.
[img]
Preview
[img]
Preview

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Wu Guohong Albert, Prochnik Simon, Jenkins Jerry, Salse Jérôme, Hellsten Uffe, Murat Florent, Perrier Xavier, Ruiz Manuel, Scalabrin Simone, Terol Javier F., Takita Marco Aurélio, Labadie Karine, Poulain Julie, Couloux Arnaud, Jabbari Kamel, Cattonaro Frederica, Del Fabbro Cristian, Pinosio Sara, Zuccolo Andrea, Chapman Jarrod, Grimwood Jane, Tadeo Francisco, Estornell Leandro H., Muñoz-Sanz Juan V., Ibáñez Victoria, Herrero-Ortega Amparo, Aleza Pablo, Pérez-Pérez Júlian, Ramón Daniel, Brunel Dominique, Luro François, Chen Chunxian, Farmerie William G., Desany Brian, Kodira Chinnappa, Mohiuddin Mohammed, Harkins Tim, Fredrikson Karin, Burns Paul, Lomsadze Alexandre, Borodovsky Mark, Reforgiato Giuseppe, Freitas-Astúa Juliana, Quetier Francis, Navarro Luis, Roose Mikeal L., Wincker Patrick, Schmutz Jeremy, Morgante Michele, Machado Marcos Antonio, Talon Manuel, Ollitrault Patrick, Gmitter Frederick G. Jr., Rokhsar Daniel S.. 2014. Nature Biotechnology, 32 : pp. 656-662.
[img] [img]

Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima). Nabholz Benoit, Sarah Gautier, Sabot François, Ruiz Manuel, Adam Hélène, Nidelet Sabine, Ghesquière Alain, Santoni Sylvain, David Jacques, Glemin Sylvain. 2014. Molecular Ecology, 23 (9) : pp. 2210-2227.
[img]

TropGeneDB, the multi-tropical crop information system updated and extended. Hamelin Chantal, Sempere Guilhem, Jouffe Vincent, Ruiz Manuel. 2013. Nucleic Acids Research, 41 (D1), D1172-D1175
[img]
Preview

The banana genome hub. Droc Gaëtan, Larivière Delphine, Guignon Valentin, Yahiaoui Nabila, This Dominique, Garsmeur Olivier, Dereeper Alexis, Hamelin Chantal, Argout Xavier, Dufayard Jean-François, Lengellé Juliette, Baurens Franc-Christophe, Cenci Alberto, Pitollat Bertrand, D'Hont Angélique, Ruiz Manuel, Rouard Mathieu, Bocs Stéphanie. 2013. Database, 2013 (bat035), 14 p.
[img]
Preview

Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton. Lacape Jean-Marc, Claverie Michel, Vidal Ramon Oliveira, Carazzolle Marcelo Falsarella, Guimarães Pereira Gonçalo Amarante, Ruiz Manuel, Pré Martial, Llewellyn Danny, Al-Ghazi Yves, Jacobs John, Dereeper Alexis, Huguet Stéphanie, Giband Marc, Lanaud Claire. 2012. PloS One, 7 (11):e48855, 16 p.
[img]

Genetic diversity and population structure in a european collection of rice. Courtois Brigitte, Frouin Julien, Greco Rafaella, Bruschi Gianluca, Droc Gaëtan, Hamelin Chantal, Ruiz Manuel, Clément Guy, Evrard Jean-Charles, Van Coppenole Sylvie, Katsantonis Dimitrios, Oliveira Margarida, Negrão Sonia, Matos Celina, Cavigiolo Stefano, Lupotto Elisabetta, Piffanelli Pietro, Ahmadi Nourollah. 2012. Crop Science, 52 (4) : pp. 1663-1675.
[img]

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. D'Hont Angélique, Denoeud France, Aury Jean-Marc, Baurens Franc-Christophe, Carreel Françoise, Garsmeur Olivier, Noël Benjamin, Bocs Stéphanie, Droc Gaëtan, Rouard Mathieu, Da Silva Corinne, Jabbari Kamel, Cardi Céline, Poulain Julie, Souquet Marlène, Labadie Karine, Jourda Cyril, Lengellé Juliette, Rodier-Goud Marguerite, Alberti Adriana, Bernard Maria, Correa Margot, Ayyampalayam Saravanaraj, Mckain Michael R, Leebens-Mack Jim, Burgess Diane, Freeling Mike, Mbéguié-A-Mbéguié Didier, Chabannes Matthieu, Wicker Thomas, Panaud Olivier, Barbosa Jose, Hribova Eva, Heslop Harrison Pat, Habas Rémy, Rivallan Ronan, François Philippe, Poiron Claire, Kilian Andrzej, Burthia Dheema, Jenny Christophe, Bakry Frédéric, Brown Spencer, Guignon Valentin, Kema Gert H.J., Dita Miguel A., Waalwijk Cees, Joseph Steeve, Dievart Anne, Jaillon Olivier, Leclercq Julie, Argout Xavier, Lyons Eric, Almeida Ana, Jeridi Mouna, Dolezel Jaroslav, Roux Nicolas, Risterucci Ange-Marie, Weissenbach Jean, Ruiz Manuel, Glaszmann Jean-Christophe, Quetier Francis, Yahiaoui Nabila, Wincker Patrick. 2012. Nature, 488 (7410) : pp. 213-217.
[img]

Molecular characterization of the European rice collection in view of association mapping. Courtois Brigitte, Greco Rafaella, Bruschi Gianluca, Frouin Julien, Ahmadi Nourollah, Droc Gaëtan, Hamelin Chantal, Ruiz Manuel, Evrard Jean-Charles, Katsantonis Dimitrios, Oliveira Margarida, Negrão Sonia, Cavigiolo Stefano, Lupotto Elisabetta, Piffanelli Pietro. 2011. Plant Genetic Resources, 9 (2) : pp. 233-235.
[img]

SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects. Dereeper Alexis, Nicolas Stéphane, Le Cunff Loïc, Bacilieri Roberto, Doligez Agnès, Péros Jean-Pierre, Ruiz Manuel, This Patrice. 2011. BMC Bioinformatics, 12 (134), 14 p.
[img]

A drought stress transcriptome profiling as the first genomic resource for white teak - Gamhar - (Gmelina arborea Roxb) and related species. Rosero Carolina, Argout Xavier, Ruiz Manuel, Teran Wilson. 2011. BMC Proceedings, 5 (7), suppl. : p. 178. Tree Biotechnology Conference from Genomes to Integration and Delivery, Bahia, Brésil, 26 June 2011/2 July 2011.
[img]

The genome of Theobroma cacao. Argout Xavier, Salse Jérôme, Aury Jean-Marc, Guiltinan Mark J., Droc Gaëtan, Gouzy Jérôme, Allègre Mathilde, Chaparro Christian, Legavre Thierry, Maximova Siela N., Abrouk Michael, Murat Florent, Fouet Olivier, Poulain Julie, Ruiz Manuel, Roguet Yolande, Rodier-Goud Marguerite, Barbosa-Neto Jose Fernandes, Sabot François, Kudrna Dave, Ammiraju Jetty Siva S., Schuster Stephan C., Carlson John E., Sallet Erika, Schiex Thomas, Dievart Anne, Kramer Melissa, Gelley Laura, Shi Zi, Bérard Aurélie, Viot Christopher, Boccara Michel, Risterucci Ange-Marie, Guignon Valentin, Sabau Xavier, Axtell Michael J., Ma Zhaorong, Zhang Yufan, Brown Spencer, Bourge Mickael, Golser Wolfgang, Song Xiang, Clément Didier, Rivallan Ronan, Tahi G.Mathias, Akaza Joseph Moroh, Pitollat Bertrand, Gramacho Karina Peres, D'Hont Angélique, Brunel Dominique, Infante Diogenes, Kébé Ismael S., Costet Pierre, Wing Rod A., Mc Combie William Richard, Guiderdoni Emmanuel, Quetier Francis, Panaud Olivier, Wincker Patrick, Bocs Stéphanie, Lanaud Claire. 2011. Nature Genetics, 43 (2) : pp. 101-108.
[img]

Rice root genetic architecture: Meta-analysis from a drought QTL database. Courtois Brigitte, Ahmadi Nourollah, Khowaja Farhkanda S., Price Adam H., Rami Jean-François, Frouin Julien, Hamelin Chantal, Ruiz Manuel. 2009. Rice, 2 (2-3) : pp. 115-128.
[img]
Preview

The Generation Challenge Programme platform : Semantic standards and workbench for crop science. Bruskiewich Richard, Senger Martin, Davenport Guy, Ruiz Manuel, Rouard Mathieu, Hazekamp Tom, Takeya Masaru, Doi Koji, Satoh Kouji, Costa Marcos, Simon Reinhard, Balaji Jayashree, Akintunde Akinnola, Mauleon Ramil P., Wanchana Samart, Shah Trushar, Anacleto Mylah, Portugal Arllet, Jun Ulat Victor, Thongjuea Supat, Braak Kyle, Ritter Sebastian, Dereeper Alexis. 2008. International Journal of Plant Genomics, 2008, 6 p.
[img]
Preview

Insights into the Musa genome : Syntenic relationships to rice and between Musa species. Lescot Magali, Piffanelli Pietro, Ciampi Ana, Ruiz Manuel, Blanc Guillaume, Leebens-Mack Jim, Da Silva Felipe, Santos Candice M.R., D'Hont Angélique, Garsmeur Olivier, Vilarinhos Alberto Duarte, Kanamori Hiroyuki, Matsumoto Takashi, Ronning Catherine, Cheung Foo, Haas Brian, Althoff Ryan, Arbogast Tammy, Hine Erin, Pappas Junior Georgios, Sasaki Takuji, Souza Manoel, Miller Roberto Neil Gerard, Glaszmann Jean-Christophe, Town Christopher. 2008. BMC Genomics, 9 (58), 20 p.
[img]
Preview

Oryza Tag Line, a phenotypic mutant database for the genoplante rice insertion line library. Larmande Pierre, Gay Céline, Lorieux Mathias, Perin Christophe, Bouniol Matthieu, Droc Gaëtan, Sallaud Christophe, Perez Pascual, Barnola Isabelle, Biderre-Petit Corinne, Martin Jérôme, Morel Jean-Benoit, Johnson Alexander A.T., Bourgis Fabienne, Ghesquière Alain, Ruiz Manuel, Courtois Brigitte, Guiderdoni Emmanuel. 2008. Nucleic Acids Research, 36 : pp. 1022-1027.
[img]
Preview

Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions. Argout Xavier, Fouet Olivier, Wincker Patrick, Gramacho Karina Peres, Legavre Thierry, Sabau Xavier, Risterucci Ange-Marie, Da Silva Corinne, Cascardo Julio Cezar M., Allègre Mathilde, Kuhn David N., Verica Joseph, Courtois Brigitte, Loor Rey Gaston, Babin Régis, Sounigo Olivier, Ducamp Michel, Guiltinan Mark J., Ruiz Manuel, Alemanno Laurence, Machado Regina, Phillips Wilbert, Schnell Raymond J., Gilmour Martin, Rosenquist Eric, Butler David R., Maximova Siela N., Lanaud Claire. 2008. BMC Genomics, 9 (512), 19 p.
[img]
Preview

The generation challenge programme comparative plant stress-responsive gene catalogue. Wanchana Samart, Thongjuea Supat, Jun Ulat Victor, Anacleto Mylah, Mauleon Ramil P., Conte Matthieu, Rouard Mathieu, Ruiz Manuel, Krishnamurthy Nandini, Sjolander Kimmen, Van Hintum Theo, Bruskiewich Richard. 2008. Nucleic Acids Research, 36 : pp. 943-946.
[img]
Preview

SAT, a flexible and optimized Web application for SSR marker development. Dereeper Alexis, Argout Xavier, Billot Claire, Rami Jean-François, Ruiz Manuel. 2007. BMC Bioinformatics, 8 (465), 10 p.
[img]

Generation Challenge Programme (GCP): Standards for crop data. Bruskiewich Richard, Davenport Guy, Hazekamp Tom, Metz Thomas, Ruiz Manuel, Simon Reinhard, Takeya Masaru, Lee Jennifer, Senger Martin, McLaren Graham, Van Hintum Theo. 2006. OMICS - A Journal of Integrative Biology, 10 (2) : pp. 215-219.
[img]

TropGENE-DB, a multi-tropical crop formation system. Ruiz Manuel, Rouard Mathieu, Raboin Louis-Marie, Lartaud Marc, Lagoda Pierre, Courtois Brigitte. 2004. Nucleic Acids Research, 32, D364-D367
[img]

INFEVERS: The Registry for FMF and hereditary inflammatory disorders mutations. Sarrauste De Menthière N., Terrière Stéphane, Pugnère Denis, Ruiz Manuel, Demaille Jacques, Touitou Isabelle. 2003. Nucleic Acids Research, 31 (1) : pp. 282-285.
[img]

The MetaFMF website: a high quality tool for meta-analysis of FMF. Pugnère Denis, Ruiz Manuel, Sarrauste De Menthière N., Masdoua Benjamin, Demaille Jacques, Touitou Isabelle. 2003. Nucleic Acids Research, 31 (1) : pp. 286-290.
[img]

Book chapter

Using TropGeneDB: a database containing data on molecular markers, QTLs, maps, genotypes, and phenotypes for tropical crops. Ruiz Manuel, Sempere Guilhem, Hamelin Chantal. 2017. In : Plant genomics databases: methods and protocols. Van Dijk Aalt D.J. (ed.). New York : Springer [Etats-Unis], pp. 161-172. (Methods in Molecular Biology, 1533) ISBN 978-1-4939-6656-1
[img]

Role of bioinformatics as a tool. Rouard Mathieu, Carpentier Sébastien Christian, Bocs Stéphanie, Droc Gaëtan, Argout Xavier, Roux Nicolas, Ruiz Manuel. 2012. In : Genetics, genomics and breeding of bananas. Pillay Michael (ed.), Ude George (ed.), Kole Chittaranjan (ed.). Enfield : Science Publishers, pp. 194-216. (Genetics, genomics and breeding of crop plants) ISBN 978-1-57808-788-4
[img]

Guest paper

The South Green Bioinformatics platform, a comprehensive resource for crop genomics. Ruiz Manuel, Dereeper Alexis, Droc Gaëtan, Sarah Gautier, Tranchant-Dubreuil Christine, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, De Lamotte Frédéric, Larmande Pierre, Sabot François, Sempere Guilhem, Summo Marilyne, Pitollat Bertrand, This Dominique, Bocs Stéphanie, Hueber Yann, El Hassouni Nordine, Martin Guillaume, Gkanogiannis Anestis, Ravel Sébastien, Monat Cécile, Tando Ndomassi, Rouard Mathieu. 2017. In : Proceedings X-Meeting 2017. s.l. : s.n., 1 p. International Conference of the AB3. 13, São Pedro, Brésil, 4 October 2017/6 October 2017.
[img]
Preview
[img]

Paper with proceedings

AgroLD: un graphe de connaissances pour la caractérisation des mécanismes moléculaires complexes impactant le phénome des plantes. Larmande Pierre, Tagny Ngompé Gildas, Ruiz Manuel. 2019. In : Journées francophones d'ingénierie des connaissances IC PFIA 2019. AFIA. Toulouse : AFIA, Résumé, pp. 217-219. Journées francophones d'Ingénierie des Connaissances (IC 2019). 30, Toulouse, France, 2 July 2019/4 July 2019.
[img]
Preview

South Green, une plateforme de bioinformatique tournée vers l'agriculture dans les pays du sud. Ravel Sébastien, Bocs Stéphanie, Brousseau Louise, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, Larmande Pierre, Mahé Frédéric, Martin Guillaume, Orjuela-Bouniol Julie, Pitollat Bertrand, Rouard Mathieu, Ruiz Manuel, Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, Tando Ndomassi, Tranchant-Dubreuil Christine. 2018. In : JOBIM 2018 Abstracts. SFBI, GdR BiM, IFB, AMU, INSERM, CNRS. Marseille : SFBI, pp. 418-420. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2018), Marseille, 3 July 2018/6 July 2018.
[img]
Preview
[img]
Preview

The Agronomic Linked Data (AgroLD) Project. [P0322]. Larmande Pierre, Ruiz Manuel, El Hassouni Nordine, Venkatesan Aravind. 2017. In : Proceedings Plant and Animal Genome XXV Conference. San Diego : PAG, 1 p. Plant and Animal Genome Conference. 25, San Diego, États-Unis, 14 January 2017/18 January 2017.
[img]
Preview

The Agronomic Linked Data (AgroLD) project. El Hassouni Nordine, Ruiz Manuel, Toulet Anne, Jonquet Clément, Larmande Pierre. 2017. In : Conference proceedings of 2017 EFITA WCCA congress: European conference dedicated to the future use of ICT in the agri-food sector, bioresource and biomass sector. EFITA, WCCA. Montpellier : IRSTEA, p. 221. ISBN 978-2-85362-686-6 European Federation for Information in Agriculture, Food and Environment (EFITA 2017), Montpellier, France, 2 July 2017/6 July 2017.
[img]
Preview

Gigwa - Genotype Investigator for Genome-Wide Analyses. [P0442]. Ruiz Manuel, Sempere Guilhem, Petel Adrien, Dereeper Alexis, Gautier Sarah, Larmande Pierre. 2017. In : Proceedings Plant and Animal Genome XXV Conference. San Diego : PAG, 1 p. Plant and Animal Genome Conference. 25, San Diego, États-Unis, 14 January 2017/18 January 2017.
[img]
Preview

Interoperability and interpretation of phenotyping data: use of plant ontologies. Arnaud Elizabeth, Ansell P., Sirault X., Cooper Laurel, Jaiswal Pankaj, Pommier Cyril, Larmande Pierre, Ruiz Manuel. 2015. In : Recent progress in drought tolerance: from genetics to modelling conference handbook. Tardieu F. (ed.), Draye X. (ed.), Charcosset A. (ed.), Hammer G. (ed.), Usadel B. (ed.), Tuberosa R. (ed.), Welker C. (ed.), Boerner A. (ed.), Simic D.(ed.), Boller B. (ed.). Eucarpia, INRA. Montpellier : INRA-Transfert, Résumé, p. 96. EUCARPIA Conference "Recent progress in drought tolerance: from genetics to modelling", Montpellier, France, 8 June 2015/9 June 2015.
[img]

Towards efficient data integration and knowledge management in the Agronomic domain. Venkatesan Aravind, El Hassouni Nordine, Philippe Florian, Pommier Cyril, Quesneville Hadi, Ruiz Manuel, Larmande Pierre. 2015. In : Actes APIA. AFIA. Rennes : AFIA, pp. 117-124. Conférence sur les Applications Pratiques de l'Intelligence Artificielle. 1, Rennes, France, 2 July 2015/3 July 2015.
[img]
Preview
[img]
Preview

Transcriptome analysis of leaves and fruits of Coffea eugenioides. Yuyama Priscilla Mary, Ivamoto Suzana Tiemi, Carazzolle Marcelo Falsarella, Reis Júnior Osvaldo, Pereira Gonçalo Amarante Guimarães, Sakuray Leonardo M., Ruiz Manuel, Leroy Thierry, Charmetant Pierre, Domingues Douglas S., Pereira L.P.P.. 2015. In : Proceedings of the 25th International Conference on Coffee Science. ASIC. Paris : ASIC, pp. 42-45. ISBN 978-2-900212-24-0 International Conference on Coffee Science. 25, Armenia, Colombie, 8 September 2014/13 September 2014.
[img]

African rice genome projects: GLASS and IRIGIN. Monat Cécile, Lorieux Mathias, Ghesquière Alain, Ahmadi Nourollah, Ruiz Manuel, Sabot François. 2013. In : La science rizicole pour la sécurité alimentaire à travers le renforcement de l'agriculture familiale et l'agro-industrie en Afrique : 3ème Congrès du riz en Afrique 2013, 21-24 octobre 2013, Yaoundé, Cameroun. Programme et résumés. Centre du riz pour l'Afrique, IRAD, FAO. Cotonou : ADRAO [Centre du Riz pour l'Afrique], p. 98. Africa Rice Congress. 3, Yaoundé, Cameroun, 21 October 2013/24 October 2013.

Use of molecular scoreboards in genetic improvement of the oil palm ( Elaeis guineensis Jacq .). Billotte Norbert, Amblard Philippe, Cochard Benoît, Cros David, Courtois Brigitte, Cuellar Térésa, Durand-Gasselin Tristan, Espeout Sandra, Flori Albert, De Franqueville Hubert, Louise Claude, Nouy Bruno, Risterucci Ange-Marie, Ruiz Manuel, Mangin B., Lanaud Claire. 2012. In : Memorias XVII Conferencia Internacional sobre Palma de Aceite y expopalma 2012, Cartagena, Colombia, del 25 al 28 de Septiembre de 2012 = Memories, 17th International oil palm conference and expopalma 2012. FEDEPALMA. Santafé de Bogota : FEDEPALMA, Diaporama, 1 diaporama (37 vues) Conferencia Internacional sobre Palma de Aceite. 17, Carthagène, Colombie, 25 September 2012/28 September 2012.
[img]

Analysis of the clone PB 260 transcriptome and evaluation of the number of genes in Hevea brasiliensis. Montoro Pascal, Argout Xavier, Sarah Gautier, Kuswanhadi, Chaidamsari Tetty, Rio Maryannick, Leclercq Julie, Ruiz Manuel. 2010. In : Climate change, low carbon economy and sustainable natural rubber industry : IRRDB International Rubber Conference, Sanya, China, 18-19 October 2010. Chen Qiubo (ed.). IRRDB. Pékin : China agriculture press, pp. 375-377. IRRDB International Rubber Conference, Sanya, Chine, 18 October 2010/19 October 2010.
[img]

CocoaGen DB : A web portal for crossing cocoa phenotypic, genetic and genomic data from ICGD and Tropgene DB database. Argout Xavier, Ruiz Manuel, Rouard Mathieu, Turnbull Christ J., Lanaud Claire, Rosenquist Eric, Courtois Brigitte. 2010. In : 15th International Cocoa Research Conference : cocoa productivity, quality, profitability, human health and the environment = 15e Conférence internationale sur la recherche cacaoyère : Productivité, qualité, rentabilité du cacao, santé humaine et environnement ; 15 Conferencia Internacional de Pesquisas em Cacau. Cacau : produtividade, qualidade, rentabilidade, saude humanna e amb. Lagos : Cocoa Producers' Alliance, pp. 515-518. Conférence internationale sur la recherche cacaoyère. 15, San José, Costa Rica, 9 October 2006/14 October 2006.
[img]

Development of guava microsatellite (SSR) markers using the SAT software. Risterucci Ange-Marie, Nansot Grégoire, Grangeon Romain, Lepitre Vincent, Dereeper Alexis, Argout Xavier, Ruiz Manuel, Billotte Norbert. 2010. In : Proceedings of the Second International Symposium on guava and other Myrtaceae, Mérida, Mexico, November 10-13, 2008, Aguascalientes, Mexico, November 17-18, 2008. Rohde Wolfgang (ed.), Fermin Gustavo (ed.). ISHS. Louvain : ISHS [Belgique], pp. 113-119. (Acta Horticulturae, 849) ISBN 978-90-6605-018-1 International Symposium on Guava and other Myrtaceae. 2, Mérida, Mexique, 10 November 2008/18 November 2008.
[img]

ESTtik, a semi-automatic cDNA sequence analysis and annotation pipeline including SSR and SNP search tools. Argout Xavier, Ruiz Manuel, Fouet Olivier, Lanaud Claire, Wincker Patrick, Da Silva Corinne, Courtois Brigitte. 2010. In : 15th International Cocoa Research Conference : cocoa productivity, quality, profitability, human health and the environment = 15e Conférence internationale sur la recherche cacaoyère : Productivité, qualité, rentabilité du cacao, santé humaine et environnement ; 15 Conferencia Internacional de Pesquisas em Cacau. Cacau : produtividade, qualidade, rentabilidade, saude humanna e amb. Lagos : Cocoa Producers' Alliance, pp. 501-506. Conférence internationale sur la recherche cacaoyère. 15, San José, Costa Rica, 9 October 2006/14 October 2006.
[img]

SL10 - EURIGEN: Characterization of European rice germplasm for stress response traits. Greco Rafaella, Bruschi Gianluca, Cavigiolo Stefano, Ahmadi Nourollah, Courtois Brigitte, Ruiz Manuel, Lee D., Oliveira Margarida, Negrão Sonia, Maçãs B., Katsantonis Dimitrios, Lupotto Elisabetta. 2010. In : Final program and abstracts of the 2nd International Symposium on Genomics of Plant Genetic Resources, Bologna, Italy, 24-27 April 2010. Bologne : Bioversity International, Résumé, p. 75. International Symposium on Genomics of Plant Genetic Resources, Bologne, Italie, 24 April 2010/27 April 2010.
[img]
Preview

A new international cocoa genetic database. Ruiz Manuel, Rouard Mathieu, Turnbull Christ J., Orain R., Ford C.S., Raboin Louis-Marie, Lartaud Marc, Lanaud Claire, Clément Didier, Petithuguenin Philippe, Wilkinson M.J., Hadley P., Brown Spencer, Rosenquist Eric, Courtois Brigitte. 2005. In : 14th International Cocoa Research Conference. Proceedings : rumo a uma economia sustentavel do cacau - quais as estrategias para este fim ? = 14th International Cocoa Research Conference. Proccedings ; 14e Conférence internationale sur la recherche cacaoyère. Actes ; 14 Conferencia Internacional de Pesquisas em Cacau. Atas ; 14 Conferencia Internacional de Investigacion en Cacao. Actas : towards a sustainable cocoa economy - what strategies to this end ? ; vers une économie cacaoyère durable : quelles stratégies d'approche ? ; rumo a uma economia sustentavel do cacau - quais as estrategias para este fim ? ; hacia una economia sustentable del ca. CEPLAC, CRIG, MCB. Lagos : Cocoa Producers' Alliance, pp. 33-41. ISBN 978-065-959-5 Conférence Internationale sur la Recherche Cacaoyère. 14, Accra, Ghana, 13 October 2003/18 October 2003.

Poster

Joining the Tripal community to efficiently expose your research. Guignon Valentin, Cannon Ethalinda K.S., Main Dorrie, Poelchau Monica, Ruiz Manuel, Sanderson Lacey-Anne, Staton Margaret, Wegrzyn Jill, Ficklin Stephen. 2020. . SFBI, IFB, GDR-BIM. Montpellier : SFBI, 1 p. Journées ouvertes de biologie, informatique et mathématique (JOBIM 2020). 20, Montpellier, France, 30 June 2020/3 July 2020.
[img]

The South Green Genome Hubs. Droc Gaëtan, Argout Xavier, Bocs Stéphanie, Comte Aurore, Dereeper Alexis, Dufayard Jean François, Garsmeur Olivier, Gkanogiannis Anestis, Guignon Valentin, Hamelin Chantal, Lopez David, Oubda Nicolas, Martin Guillaume, Ravel Sébastien, Ruiz Manuel, Summo Marilyne, Thomas Coline, Tranchant-Dubreuil Christine, Rouard Mathieu. 2020. . SFBI, IFB, GDR-BIM. Montpellier : SFBI, 1 p. Journées ouvertes de biologie, informatique et mathématique (JOBIM 2020), Montpellier, France, 30 June 2020/3 July 2020.
[img]

South Green bioinformatic resources for tropical and Mediterranean crops. Rouard Mathieu, Bocs Stéphanie, Breton Catherine, Comte Aurore, De Lamotte Frédéric, Dereeper Alexis, Droc Gaëtan, Dufayard Jean François, Guignon Valentin, Hamelin Chantal, Larmande Pierre, Lopez David, Mahe Frédéric, Martin Guillaume, Orjuela-Bouniol Julie, Pitollat Bertrand, Ravel Sébastien, Ruiz Manuel, Sabot François, Sarah Gautier, Sempere Guilhem, Summo Marilyne, Tando Ndomassi, Tranchant-Dubreuil Christine. 2020. . SFBI, IFB, GDR-BIM. Montpellier : SFBI, 1 p. Journées ouvertes de biologie, informatique et mathématique (JOBIM 2020). 20, Montpellier, France, 30 June 2020/3 July 2020.
[img] [img]

Resources to manage Rice Big Genomics Data. Agret Clément, Gottin Celine, Dereeper Alexis, Tranchant-Dubreuil Christine, Chateau Annie, Diévart Anne, Sarah Gautier, Mancheron Alban, Ruiz Manuel, Droc Gaëtan. 2019. . Taipei : ISFRG, 1 p. International Symposium of Rice Functional Genomics. 17, Taipei, Taïwan / (République de Chine (Taïwan)), 4 November 2019/6 November 2019.
[img] [img]

Genotype investigator for Genome Wide Analysis (GIGwA) [P1111]. Larmande Pierre, Sempere Guilhem, Philippe Florian, Dereeper Alexis, Ruiz Manuel, Sarah Gautier. 2015. In : Plant and Animal Genomes Conference XXIII Conference, San diego, United States, San Diego, United States, January 10-14, 2015. s.l. : s.n., Résumé Plant and Animal Genome Conference. 23, San Diego, États-Unis, 10 January 2015/14 January 2015.
[img]
Preview

Facilitating efficient knowledge management and discovery in the Agronomic Sciences. Venkatesan Aravind, Larmande Pierre, Jonquet Clément, Ruiz Manuel, Valduriez Patrick. 2014. . Amsterdam : Research Data Alliance, 1 poster Plenary Meeting: Agricultural Data Interoperability Interest Group. 4, Amsterdam, Pays-Bas, 22 September 2014/24 September 2014.
[img]
Preview

Semantic annotation workflow using bio-ontologies. Castanier E., Jonquet Cécile, Melzi S., Larmande Pierre, Ruiz Manuel, Valduriez Patrick. 2014. . Montpellier : CGIAR, 1 poster Workshop on Crop Ontology and Phenotyping Data Interoperability, Montpellier, France, 31 March 2014/4 April 2014.
[img]
Preview

Banana genome hub. Droc Gaëtan, Larivière Delphine, Guignon Valentin, Yahiaoui Nabila, This Dominique, Garsmeur Olivier, Dereeper Alexis, Hamelin Chantal, Argout Xavier, Dufayard Jean-François, Lengellé Juliette, Baurens Franc-Christophe, Cenci Alberto, Pitollat Bertrand, D'Hont Angélique, Ruiz Manuel, Rouard Mathieu, Bocs Stéphanie. 2013. In : 6th International Biocuration Conference, Cambridge, Royaume-Uni, april 07-10 2013. s.l. : s.n., 1 p. International Biocuration Conference. 6, Cambridge, Royaume-Uni, 7 April 2013/10 April 2013.
[img]
Preview

MS-DMind : multiscale data "minding" for molecular process related to biotic and abiotic stresses: pilot study with the nsLTP superfamily of proteins. Genomique Edition 2008. Ruiz Manuel, Fleury Cécile, De Lamotte Frédéric, Gautier Marie-Françoise, Dufayard Jean-François, Molina Franck. 2012. In : Plant Genomics Seminar, Pont Royal, France, 3-5 avril 2012. s.l. : s.n., 1 p. Plant Genomics Seminar, Pont Royal en Provence, France, 3 April 2012/5 April 2012.
[img]
Preview

Deep sequencing of Hevea brasiliensis small RNAs. Gebelin Virginie, Argout Xavier, Rio Maryannick, Engchuan Worrawat, Ruiz Manuel, Leclercq Julie. 2011. In : Evolution des mécanismes de régulation du développement des plantes, Roscoff, France, 30 avril au 4 mai 2011. Conférences Jacques Monod; CNRS. s.l. : s.n., 1 p. Jacques Monod Conférences, Roscoff, France, 30 April 2011/4 May 2011.
[img]
Preview

Sequencing the Cocoa criollo genome : An international initiative of the ICGS (International Cocoa Genome Sequencing) consortium (P050). Argout Xavier, Salse Jérôme, Aury Jean-Marc, Guiltinan Mark J., Droc Gaëtan, Gouzy Jérôme, Allègre Mathilde, Chaparro Christian, Legavre Thierry, Maximova Siela N., Abrouk Michael, Murat Florent, Fouet Olivier, Poulain Julie, Ruiz Manuel, Roguet Yolande, Rodier-Goud Marguerite, Barbosa-Neto Jose Fernandes, Sabot François, Kudrna Dave, Ammiraju Jetty Siva S., Schuster Stephan C., Carlson John E., Sallet Erika, Schiex Thomas, Dievart Anne, Kramer Melissa, Gelley Laura, Shi Zi, Bérard Aurélie, Viot Christopher, Boccara Michel, Mournet Pierre, Risterucci Ange-Marie, Guignon Valentin, Sabau Xavier, Axtell Michael J., Ma Zhaorong, Zhang Yufan, Brown Spencer, Bourge Mickael, Golser Wolfgang, Song Xiang, Clément Didier, Rivallan Ronan, Tahi G.Mathias, Akaza Joseph Moroh, Pittolat Bertrand, Gramacho Karina Peres, D'Hont Angélique, Brunel Dominique, Infante Diogenes, Kébé Ismael S., Costet Pierre, Wing Rod A., Mc Combie William Richard, Guiderdoni Emmanuel, Quetier Francis, Panaud Olivier, Wincker Patrick, Bocs Stéphanie, Lanaud Claire. 2011. In : Abstracts of Plant and Animal Genomes XIXth Conference, San Diego, CA (USA), January 15-19, 2011. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 19, San Diego, États-Unis, 15 January 2011/19 January 2011.
[img]

Structure-based classification of the plant non-specific lipid transfer protein superfamily towards its functional characterization. Fleury Cécile, Gautier Marie-Françoise, Dufayard Jean-François, Molina Franck, Ruiz Manuel, De Lamotte Frédéric. 2011. In : 10 th European Conference on Computational Biology (ISMB. ECCB 2011), 17-19 july 2011, Vienna, Austria. s.l. : s.n., 1 p. European conference on computational biology. 10, Vienne, Autriche, 17 July 2011/19 July 2011.
[img]
Preview

Comparative population genomics of crops and their wild relatives. Glemin Sylvain, Chantret Nathalie, De Kochko Alexandre, Santoni Sylvain, Risterucci Ange-Marie, Morcillo Fabienne, Ruiz Manuel, Pham Jean Louis, David Jacques. 2010. In : Annual Meeting of the Society for Molecular Biology and Evolution, Lyon, France, 04-08 july 2010. s.l. : s.n., 1 p. Annual Meeting of the Society for Molecular Biology and Evolution, Lyon, France, 4 July 2010/8 July 2010.
[img]

Towards a multi-scale and formalized representation of protein sequence-structure-function relationships: The nsLTP family as a case of study. Fleury Cécile, Gautier Marie-Françoise, Larmande Pierre, Pérès Sabine, De Lamotte Frédéric, Molina Franck, Ruiz Manuel. 2010. In : Journées ouvertes biologie informatique mathématique (JOBIM), Montpellier, France, 07-09 septembre 2010. s.l. : s.n., 1 p. Journées ouvertes biologie informatique mathématique, Montpellier, France, 7 September 2010/9 September 2010.
[img]
Preview

The Musa Germplasm Information System enhances knowledge of banana diversity. Ruas Max, Channelière Stéphanie, Sempere Guilhem, Ruiz Manuel, Arnaud Elizabeth, Van Den Houwe Ines, Horry Jean-Pierre, Roux Nicolas. 2009. In : Proceedings of TDWG 2009 Annual Conference, Montpellier, France, 9-13 november 2009. ed. by Anna L. Weitzman. Montpellier : Biodiversity Information Standards (TDWG), Résumé, 1 p. TDWG 2009 Annual Conference, Montpellier, France, 9 November 2009/13 November 2009.
[img]
Preview

Rice drought tolerance QTLs: Meta-analysis improves resolution to a few candidate gene level. Courtois Brigitte, Ahmadi Nourollah, Khowaja Farhkanda S., Price Adam H., Rami Jean-François, Frouin Julien, Hamelin Chantal, Ruiz Manuel. 2009. In : 6th International Rice Genetics Symposium, Manila, Philippines, 06-19 November 2009. s.l. : s.n., 1 p. International Rice Genetics Symposium. 6, Manille, Philippines, 6 November 2009/19 November 2009.
[img]
Preview

GnpAnnot Project 2008. Sidibé-Bocs Stéphanie, Droc Gaëtan, Ruiz Manuel, Rouard Mathieu, Roux Nicolas, Alaux Michael, Steinbach Samson Delphine, Kimmel Erik, Pommier Cyril, Luyten Isabelle, et al.. 2008. In : Séminaire Genoplante, Arles, 1-3 avril 2008. s.l. : s.n., 1 p. Génoplante, Arles, France, 1 April 2008/3 April 2008.
[img]
Preview

HaploPhyle : graphical haplotype network in the light of external data. Sarah Gautier, Ruiz Manuel, Perrier Xavier, Billot Claire. 2008. In : Journées ouvertes biologie informatique mathématique (JOBIM), Lille, France, 30 juin au 2 juillet 2008. s.l. : s.n., 1 p. Journées ouvertes biologie informatique mathématique, Lille, France, 30 June 2008/2 July 2008.
[img]
Preview

GenMapping web query, an integrated and genetic web application connected to multiple genetic and genomic mapping plant data sources. Poster 15. Dereeper Alexis, Argout Xavier, Ruiz Manuel. 2007. In : 4th International Workshop on Data Integration in the Life Sciences : poster abstracts. s.l. : s.n., Résumé, p. 18. International Workshop on Data Integration in the Life Science. 4, Philadelphia, États-Unis, 27 June 2007/29 June 2007.

TropGENE-DB, a multi-tropical crop information system. Poster 14. Hamelin Chantal, Ruiz Manuel, Argout Xavier. 2007. In : 4th International Workshop on Data Integration in the Life Sciences : poster abstracts. s.l. : s.n., Résumé, p. 17. International Workshop on Data Integration in the Life Science. 4, Philadelphia, États-Unis, 27 June 2007/29 June 2007.
[img]
Preview

OryGenesDB: A database for rice reverse genetics : [P355]. Droc Gaëtan, Ruiz Manuel, Larmande Pierre, Pereira Andy, Piffanelli Pietro, Morel Jean-Benoit, Dievart Anne, Courtois Brigitte, Guiderdoni Emmanuel, Perin Christophe. 2005. In : 5th International Rice Genetics Symposium (A platform for exploring developments in rice genetics and their applications) and 3rd International Symposium of Rice Functional Genomics. Abstract. IRRI. Manila : IRRI, Résumé, p. 234. International Rice Genetics Symposium. 5, Manille, Philippines, 19 November 2005/23 November 2005.

Genetic and physical mapping of resistance and defence gene analogs colocalised with QTL of resistance for Phytophthora in cocoa [ fruit trees. P 600]. Lanaud Claire, Clément Didier, Fouet Olivier, Ruiz Manuel, Le Cunff Loïc, Risterucci Ange-Marie, Sabau Xavier, Glaszmann Jean-Christophe, Piffanelli Pietro. 2004. . s.l. : s.n. Plant and Animal Genomes Conference. 12, San Diego, États-Unis, 10 January 2004/14 January 2004.

Genetic and physical mapping of resistance and defence gene analogs colocalised with QTL of resistance for Phytophthora in cocoa. Lanaud Claire, Clément Didier, Fouet Olivier, Ruiz Manuel, Le Cunff Loïc, Risterucci Ange-Marie, Sabau Xavier, Glaszmann Jean-Christophe, Piffanelli Pietro. 2003. In : 14th International Cocoa Research Conference, 13-18 October 2003, Accra, Ghana. Montpellier : Cirad, 1 p. Conférence Internationale sur la Recherche Cacaoyère. 14, Accra, Ghana, 13 October 2003/18 October 2003.
[img]
Preview

Paper without proceedings

South Green resources to manage Rice Big Genomics Data [W682]. Agret Clément, Gottin Celine, Dereeper Alexis, Tranchant-Dubreuil Christine, Chateau Annie, Diévart Anne, Sarah Gautier, Mancheron Alban, Sempere Guilhem, Ruiz Manuel, Droc Gaëtan. 2020. In : Abstracts workshops of the PAG XXVIII. San Diego : PAG, Résumé, p. 302. Plant and Animal Genome. 28, San Diego, États-Unis, 11 January 2020/15 January 2020.
[img]
Preview
[img]
Preview

AgroLD: a Linked Data platform to understand plant genotype-phenotype interactions. Larmande Pierre, Tagny Ngompé Gildas, Ruiz Manuel. 2019. . INRA. Paris : INRA, Résumé, 1 p. International Symposium on Integrative Bioinformatics 2019 (IB 2019), Paris, France, 18 September 2019/20 September 2019.
[img]

The south green rice genome hub. Droc Gaëtan, Dereeper Alexis, Ruiz Manuel, Antoine Chloé, Barca Maïra, Tranchant-Dubreuil Christine. 2019. . San Diego : s.n., Résumé, 1 p. Plant and Animal Genome. 17, San Diego, États-Unis, 12 January 2019/16 January 2019.
[img]
Preview

AGROLD: A knowledge graph database for rice functional genomics. Larmande Pierre, El Hassouni Nordine, Venkatesan Aravind, Ruiz Manuel. 2018. . ISFG, Tokyo University of Agriculture, JSB. Tokyo : ISRFG, Résumé, 1 p. International Symposium on Rice Functional Genomics (ISRFG 2018). 16, Tokyo, Japon, 5 September 2018/7 September 2018.
[img]

Agronomic Linked Data (AgroLD): a Knowledge-based System to Enable Integrative Biology in Agronomy. Larmande Pierre, El Hassouni Nordine, Venkatesan Aravind, Jonquet Clément, Ruiz Manuel. 2018. In : JOBIM 2018 Abstracts. SFBI, GdR BiM, IFB, AMU, INSERM, CNRS. Marseille : SFBI, Résumé, pp. 542-543. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2018), Marseille, 3 July 2018/6 July 2018.
[img]
Preview

Capturing next-generation genome wide molecular markers in cassava helps to untangle the crop's genetic improvement history [W144]. Becerra López-Lavalle Luis Agusto, Villafrade Rodriguez Zapata Fausto, Ovalle Tatiana, Ruiz Manuel, Gkanogiannis Anestis, Tohmé Joe. 2018. In : Proceedings Plant and Animal Genome XXVI Conference. PAG. San Diego : PAG, Résumé, 1 p. Plant and Animal Genomes Conference. 26, San Diego, États-Unis, 13 January 2018/17 January 2018.
[img]
Preview

Data standards for plant phenotyping: MIAPPE and its implementations [W785]. Pommier Cyril, Cornut Guillaume, Letellier Thomas, Michotey Célia, Neveu Pascal, Ruiz Manuel, Larmande Pierre, Kersey Paul J., Cwiek Hanna, Krajewski Pawel, Coppens Frederik, Finkers Richard, Laporte Marie-Angélique, Faria Daniel, Miguel Célia M., Chavez Ines, Adam-Blondon Anne-Françoise, Costa Bruno. 2018. In : Proceedings Plant and Animal Genome XXVI Conference. PAG. San Diego : PAG, Résumé, 1 p. Plant and Animal Genomes Conference. 26, San Diego, États-Unis, 13 January 2018/17 January 2018.
[img]
Preview
[img]
Preview

Gigwa - Genotype Investigator for Genome-Wide Analyses. Sempere Guilhem, Petel Adrien, Dereeper Alexis, Ruiz Manuel, Larmande Pierre. 2018. In : JOBIM 2018 Abstracts. SFBI, GdR BiM, IFB, AMU, INSERM, CNRS. Marseille : SFBI, Résumé, pp. 251-252. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2018), Marseille, 3 July 2018/6 July 2018.
[img]
Preview

Population structure of wild and cultivated plants shows hierarchical organization of cassava germplasm diversity. [P0324]. Villafrade Rodriguez Zapata Fausto, Ovalle Tatiana, Ruiz Manuel, Gkanogiannis Anestis, Becerra López-Lavalle Luis Agusto. 2018. In : Proceedings Plant and Animal Genome XXVI Conference. PAG. San Diego : PAG, Résumé, 1 p. Plant and Animal Genomes Conference. 26, San Diego, États-Unis, 13 January 2018/17 January 2018.
[img]
Preview

The cassava genome hub. [C20]. Gkanogiannis Anestis, Dereeper Alexis, Szurek Boris, Zarate Carlos, López Camilo, Becerra López-Lavalle Luis Agusto, Ruiz Manuel. 2018. In : Proceedings Plant and Animal Genome XXVI Conference. PAG. San Diego : PAG, Résumé, 1 p. Plant and Animal Genomes Conference. 26, San Diego, États-Unis, 13 January 2018/17 January 2018.
[img]
Preview
[img]
Preview

The international rice informatics consortium bioinformatics resources. Mauleon Ramil P., McNally Kenneth L., Mansueto Locedie, Chebotarov Dmytro, Hendrix Barboza Lord, Juanillas Venice, Larmande Pierre, Droc Gaëtan, Ruiz Manuel, Dereeper Alexis, Sackville Hamilton N. Ruaraidh, Alexandrov Nickolai, Leung Hei, Wing Rod A.. 2018. . ISFG, Tokyo University of Agriculture, JSB. Tokyo : ISRFG, Résumé, 1 p. International Symposium on Rice Functional Genomics (ISRFG 2018). 16, Tokyo, Japon, 5 September 2018/7 September 2018.
[img]

Development of indexing compressed structure for analyzing a collection of similar genomes: application to rice. Agret Clément, Sarah Gautier, Chateau Annie, Mancheron Alban, Ruiz Manuel. 2017. . Lille : CNRS, Résumé, pp. 12-13. Journées Seqbio 2017, Lille, France, 6 November 2017/7 November 2017.
[img]
Preview
[img]
Preview

Evaluation of methodologies for the characterization of plant mosaic genomes. Cottin Aurélien, Penaud Benjamin, Martin Guillaume, Santos Joao, Curk Franck, D'Hont Angélique, Ruiz Manuel, Glaszmann Jean-Christophe, Yahiaoui Nabila, Gautier Mathieu. 2017. In : Abstract Book Dynagev 2017. Réseau scientifique DYNAGEV. Montpellier : INRA, Résumé, p. 17. Colloque annuel DynaGeV : Dynamique des génomes végétaux. 3, Montpellier, France, 8 June 2017/9 June 2017.
[img]
Preview

Enabling knowledge management in the agronomic domain. W448. Larmande Pierre, Venkatesan Aravind, Ruiz Manuel, Sempere Guilhem, Valduriez Patrick. 2015. . San Diego : s.n., Résumé, 1 p. Plant and Animal Genome Conference. 23, San Diego, États-Unis, 10 January 2015/14 January 2015.
[img]
Preview
[img]

Modelling the population history using population genomics : the tomato domestication as a case of study. Sauvage Christopher, Aichholz Charlotte, Sarah Gautier, Ruiz Manuel, Causse Mathilde, David Jacques, Glemin Sylvain. 2015. In : The 12th Solanacae Conference SOL2015 book of abstracts. INRA. Villenave-d'Ornon : INRA, p. 97. Solanacae Conference (SOL2015). 12, Bordeaux, France, 25 October 2015/29 October 2015.
[img]
Preview

African rices genome projects : GLASS and irigin : [P129]. Monat Cécile, Tranchant-Dubreuil Christine, Lorieux Mathias, Ghesquière Alain, Ruiz Manuel, Sabot François. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 January 2014/15 January 2014.
[img]
Preview

The Banana Genome Hub : [W079]. Droc Gaëtan, Larivière Delphine, Guignon Valentin, Yahiaoui Nabila, This Dominique, Garsmeur Olivier, Dereeper Alexis, Hamelin Chantal, Argout Xavier, Dufayard Jean-François, Lengellé Juliette, Baurens Franc-Christophe, Cenci Alberto, Pitollat Bertrand, D'Hont Angélique, Ruiz Manuel, Rouard Mathieu, Bocs Stéphanie. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 January 2014/15 January 2014.
[img]
Preview

The south green bioinformatics platform : [P988]. Rouard Mathieu, Dereeper Alexis, Droc Gaëtan, Sarah Gautier, Dufayard Jean-François, Guignon Valentin, Hamelin Chantal, Homa Félix, De Lamotte Frédéric, Larmande Pierre, Larivière Delphine, Sabot François, Sempere Guilhem, Summo Marilyne, Pitollat Bertrand, Pointet Stéphanie, This Dominique, Bocs Stéphanie, Ruiz Manuel. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 January 2014/15 January 2014.
[img]
Preview

The study of domestication reveals a loss of diversity, signature of selection and transcriptional modifications in tomato (Solanum lycopersicum). Sauvage Christopher, Nabholtz B., Gautier Sarah, Ruiz Manuel, Causse Mathilde, David Jacques, Glemin Sylvain. 2014. . Avignon : INRA, p. 9. Eucarpia Meeting, Vegetable section, Tomato Working group. 28, Avignon, France, 22 April 2014/25 April 2014.
[img]
Preview

GNPAnnot: a community annotation system applied to sugarcane sequences : W745. Garsmeur Olivier, Droc Gaëtan, Guignon Valentin, Charron Carine, D'Hont Angélique, Ruiz Manuel, Bocs Stéphanie. 2013. In : Plant and Animal Genome XXI conference, San Diego, USA, January 12-16 2013,. s.l. : s.n., Résumé, 1 p. Plant and Animal Genome conference. 21, San Diego, États-Unis, 12 January 2013/16 January 2013.
[img]
Preview
[img]
Preview

Major cause of somatic polymorphism in clonal grape cultivars : W702. This Patrice, Carrier Gregory, Dereeper Alexis, Legrand Delphine, Sabot François, Maillol Vincent, Pajeile Maud, Ruiz Manuel, Romieu Charles, Bouchez Olivier, Audeguin Laurent, Boursiquot Jean-Michel, Le Cunff Loïc. 2013. In : Plant and Animal Genome XXI conference, San Diego, USA, January 12-16 2013,. s.l. : s.n., Résumé, 1 p. Plant and Animal Genome conference. 21, San Diego, États-Unis, 12 January 2013/16 January 2013.
[img]
Preview
[img]
Preview

Multi-Parent QTL/Gene Mapping, Novel Field Trial Systems and Intra-Gene Markers: A Key Method for Marker-Assisted Selection in Oil Palm (Elaeis guineensis Jacq.). W493. Billotte Norbert, Baurens Franc-Christophe, Cochard Benoît, Courtois Brigitte, Cuellar Térésa, Espeout Sandra, Flori Albert, Risterucci Ange-Marie, Ruiz Manuel, Amblard Philippe, De Franqueville Hubert, Louise Claude, Nouy Bruno, Durand-Gasselin Tristan, D'Hont Angélique, Mangin B., Lanaud Claire. 2012. In : Plant and Animal Genome XX conference, San Diego, USA, January 14-18 2012,. s.l. : s.n., Résumé, 1 p. Plant and Animal Genome conference. 20, San Diego, États-Unis, 14 January 2012/18 January 2012.
[img]

Role of Galaxy in a bioinformatic plant breeding platform. Maillol Vincent, Bacilieri Roberto, Bocs Stéphanie, Boursiquot Jean-Michel, Carrier Gregory, Dereeper Alexis, Droc Gaëtan, Fleury Cécile, Larmande Pierre, Le Cunff Loïc, Péros Jean-Pierre, Pitollat Bertrand, Ruiz Manuel, Sarah Gautier, Sempere Guilhem, Summo Marilyne, This Patrice, Dufayard Jean-François. 2012. In : Galaxy Community Conference GCC2012, Chicago, Etats-Unis, July 25-27 2012. s.l. : s.n., Résumé, 1 p. Galaxy Community Conference, Chicago, États-Unis, 25 July 2012/27 July 2012.
[img]
Preview
[img]
Preview

Deciphering the genome structure of Theobroma cacao (W107). Argout Xavier, Salse Jérôme, Aury Jean-Marc, Guiltinan Mark J., Droc Gaëtan, Gouzy Jérôme, Allègre Mathilde, Chaparro Christian, Legavre Thierry, Maximova Siela N., Abrouk Michael, Murat Florent, Fouet Olivier, Poulain Julie, Ruiz Manuel, Roguet Yolande, Rodier-Goud Marguerite, Barbosa-Neto Jose Fernandes, Sabot François, Kudrna Dave, Ammiraju Jetty Siva S., Schuster Stephan C., Carlson John E., Sallet Erika, Schiex Thomas, Dievart Anne, Kramer Melissa, Gelley Laura, Shi Zi, Bérard Aurélie, Viot Christopher, Boccara Michel, Risterucci Ange-Marie, Guignon Valentin, Sabau Xavier, Axtell Michael J., Ma Zhaorong, Zhang Yufan, Brown Spencer, Bourge Mickael, Golser Wolfgang, Song Xiang, Clément Didier, Rivallan Ronan, Tahi G.Mathias, Akaza Joseph Moroh, Pittolat Bertrand, Gramacho Karina Peres, D'Hont Angélique, Brunel Dominique, Infante Diogenes, Kébé Ismael S., Costet Pierre, Wing Rod A., Mc Combie William Richard, Guiderdoni Emmanuel, Quetier Francis, Panaud Olivier, Wincker Patrick, Bocs Stéphanie, Lanaud Claire. 2011. In : Abstracts of Plant and Animal Genomes XIXth Conference, San Diego, CA (USA), January 15-19, 2011. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 19, San Diego, États-Unis, 15 January 2011/19 January 2011.
[img]

SNiPlay: a web-based tool for detection, management and analysis of SNP (C900). Dereeper Alexis, Nicolas Stéphane, Carrier Gregory, Le Cunff Loïc, Bacilieri Roberto, Doligez Agnès, Péros Jean-Pierre, This Patrice, Ruiz Manuel. 2011. In : Abstracts of Plant and Animal Genomes XIXth Conference, San Diego, CA (USA), January 15-19, 2011. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 19, San Diego, États-Unis, 15 January 2011/19 January 2011.
[img]

Agropolis Resource Center for Crop Conservation, Adaptation and Diversity (ARCAD) : a new open multi-function platform devoted to plant agrobiodiversity. Pham Jean Louis, Ahmadi Nourollah, David Jacques, Engelmann Florent, Ghesquière Alain, Glemin Sylvain, Labouisse Jean-Pierre, Leclerc Christian, Noyer Jean-Louis, Prosperi Jean Marie, Risterucci Ange-Marie, Ronfort Joëlle, Roumet P., Ruiz Manuel, Santoni Sylvain, Seguin Marc, This Patrice, Thuillet Anne-Céline, Vigouroux Yves. 2010. In : Final program and abstracts of the 2nd International Symposium on Genomics of Plant Genetic Resources, Bologna, Italy, 24-27 April 2010. Rome : Bioversity International, Résumé, p. 151. International Symposium on Genomics of Plant Genetic Resources. 2, Bologne, Italie, 24 April 2010/27 April 2010.
[img]

Towards a bioinformatics platform for the Musa research community : [Abstract W076]. Rouard Mathieu, Argout Xavier, Bocs Stéphanie, Conte Matthieu, Droc Gaëtan, Guignon Valentin, Hamelin Chantal, Roux Nicolas, Ruiz Manuel. 2010. In : Abstracts of Plant and Animal Genomes XVIIIth Conference, San Diego, CA (USA), January 09-13, 2010. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 18, San Diego, États-Unis, 9 January 2010/13 January 2010.
[img]

Semantic standards for genomic analyses of the South and Mediterranean plants: the Generation Challenge Program use case. Ruiz Manuel. 2009. In : Proceedings of TDWG 2009 Annual Conference, Montpellier, France, 9-13 november 2009. ed. by Anna L. Weitzman. Montpellier : Biodiversity Information Standards (TDWG), Résumé, 1 p. TDWG 2009 Annual Conference, Montpellier, France, 9 November 2009/13 November 2009.
[img]
Preview

Statement of transcriptomics and bioinformatics analyses conducted at CIRAD in rubber tree: Towards the genome analysis. Argout Xavier, Garcia Dominique, Montoro Pascal, Pujade-Renaud Valérie, Ruiz Manuel, Seguin Marc, Sidibé-Bocs Stéphanie. 2009. In : 3rd IRRDB Workshop on the Hevea Genome and Transcriptome (Book of abstracts), 3-5 June, 2009, Montpellier, France. s.l. : s.n., Résumé, p. 49. IRRDB Workshop on the Hevea Genome and Transcriptome. 3, Montpellier, France, 3 June 2009/5 June 2009.
[img]
Preview

The Generation Challenge Programme (GCP) platform for crop research. Bruskiewich Richard, Senger Martin, Davenport Guy, Ruiz Manuel. 2008. In : Abstracts of Plant and Animal Genomes XVIth Conference, San Diego, CA (USA), January 12-16, 2008. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 16, San Diego, États-Unis, 12 January 2008/16 January 2008.
[img]
Preview

The International Cocoa Genome Sequencing Consortium (ICGS): a coordinated strategy to sequence and analyse Theobroma cacao genome [Draft]. Lanaud Claire, Argout Xavier, Fouet Olivier, Allègre Mathilde, Sidibé-Bocs Stéphanie, Ruiz Manuel, Kudrna Dave, Ssa Jetty, Wing Rod A., Clément Didier, Gramacho Karina Peres, Tahi G.Mathias, Brunel Dominique, Bérard Aurélie, Boccara Michel, Udall Joshua, Guiltinan Mark J., Infante D., Costet Pierre, Zang D., Risterucci Ange-Marie, Legavre Thierry, Sabau Xavier, Wincker Patrick. 2008. In : Seventh Plant Genomics European Meetings (Plant GEM), 24-27 September 2008, Albena, Bulgaria. s.l. : s.n., pp. 1-16. Plant Genomics European Meetings. 7, Albena, Bulgarie, 24 September 2008/27 September 2008.
[img]
Preview

Development of data templates for data collection, storage and database submission. Davenport Guy, Anducho Miguel, Braak Kyle, Bruskiewich Richard, Carollo Blake Victoria, Hazekamp Tom, Farmer Andrew, Matthews Dave, Meintjes Ayton, Metz Thomas, Morris Jane, Ruiz Manuel, Schaeffer Mary, Van Hintum Theo, McCouch Susan. 2007. In : Abstracts of Plant and Animal Genomes XVth Conference, San Diego, CA (USA), January 13-17, 2007. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 15, San Diego, États-Unis, 13 January 2007/17 January 2007.

Generation challenge programme (GCP) domain modeling and crop information platform. Bruskiewich Richard, Braak Kyle, Davenport Guy, Dereeper Alexis, Farmer Andrew, Hazekamp Tom, McLaren Graham, Metz Thomas, Ritter Sebastian, Ruiz Manuel, Senger Martin, Simon Reinhard, Takeya Masaru, Van Hintum Theo. 2007. In : Abstracts of Plant and Animal Genomes XVth Conference, San Diego, CA (USA), January 13-17, 2007. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 15, San Diego, États-Unis, 13 January 2007/17 January 2007.

Meta-analysis of QTLs involved in rice root development using a QTL database. Ahmadi Nourollah, Courtois Brigitte, Khowaja Farhkanda S., Perice A., Frouin Julien, Hamelin Chantal, Ruiz Manuel. 2007. In : International Symposium Root Biology and MAS Strategies for Drought Resistance Imporvement in Rice, Bangalore, India, September 26-29, 2007. s.l. : s.n., Résumé, 1 p. International Symposium Root Biology and MAS Strategies for Drought Resistance Imporvement in Rice, Bangalore, Inde, 26 September 2007/29 September 2007.
[img]

Crop information systems : the next generation. Bruskiewich Richard, Davenport Guy, Senger Martin, Metz Thomas, Ruiz Manuel, Dereeper Alexis, Takeya Masaru, Hazekamp Tom, Rouard Mathieu, Simon Reinhard, Rojas E., Balaji Jayashree, Akintunde Akinnola, Costa Marcos, Bink Marco, Wanchana Samart, Mauleon Ramil P., Morris Jane, Farmer Andrew, Chandra S., Kikuchi S., Gaiji Samy, McLaren Graham, Van Hintum Theo. 2006. In : Plant Genomics European Meetings, Venice, 2006. Bologne : Ed. Avenue media, Résumé, p. 77. Plant Genomics European Meetings. 5, Venise, Italie, 11 October 2006/14 October 2006.

Generation challenge programme (GCP) domain modeling and crop information platform. Bruskiewich Richard, Davenport Michael, Simon Reinhard, Ruiz Manuel, Farmer Andrew, Metz Matthew, Hazekamp Tom, Takeya Masaru, Lee Jennifer, McLaren Graham, Van Hintum Theo. 2006. In : Abstracts of Plant and Animal Genomes XIVth Conference, San Diego, CA (USA), January 14-18, 2006. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 14, San Diego, États-Unis, 14 January 2006/18 January 2006.

SAT, a web-based pipeline for SSR markers development from enriched libraries. Dereeper Alexis, Argout Xavier, Billot Claire, Rami Jean-François, Ruiz Manuel. 2006. In : Abstracts of Plant and Animal Genomes XIVth Conference, San Diego, CA (USA), January 14-18, 2006. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 14, San Diego, États-Unis, 14 January 2006/18 January 2006.

Analysis of the Musa genome from BAC sequencing and its comparison with rice. Piffanelli Pietro, Ciampi Ana, Ruiz Manuel, Rodrigues da Silva Felipe, Lescot Magali, Papas Georgios J., Ronning Catherine, Haas Brian, Wortman Jennifer, Frison Emile A., Roux Nicolas, Miller Roberto Neil Gerard, Côte François-Xavier, D'Hont Angélique, Souza Manoel, Glaszmann Jean-Christophe, Town Christopher. 2005. In : Abstracts of Plant and Animal Genomes XIIIth Conference, San Diego, CA (USA), January 15-19, 2005. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 13, San Diego, États-Unis, 15 January 2005/19 January 2005.

Web accessible tropical crop databases. Ruiz Manuel, Droc Gaëtan, Larmande Pierre, Perin Christophe, Rouard Mathieu, Courtois Brigitte. 2005. In : Abstracts of Plant and Animal Genomes XIIIth Conference, San Diego, CA (USA), January 15-19, 2005. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 13, San Diego, États-Unis, 15 January 2005/19 January 2005.

Comparative analysis of Musa and rice genome structure and organization. Piffanelli Pietro, Ciampi Ana, Ruiz Manuel, Rodrigues da Silva Felipe, Papas Georgios J., Ronning Catherine, Haas Brian, Wortman Jennifer, Frison Emile A., Roux Nicolas, Miller Roberto Neil Gerard, Côte François-Xavier, D'Hont Angélique, Souza Manoel, Glaszmann Jean-Christophe, Town Christopher. 2004. In : First International congress on #Musa#: harnessing research for improved livelihoods, 6-9 July 2004, Penang, Malaysia. Abstract guide. Picq Claudine (ed.), Vézina Anne (ed.). INIBAP, MARDI, BAPNET, University of Malaya, University of Putra, IPGRI. Montpellier : INIBAP, Résumé, p. 21. International Congress on Musa: Harnessing Research for Improved Livelihoods. 1, Penang, Malaisie, 6 July 2004/9 July 2004.

Implementation of a cotton crop module to the TropGENE-DB information system. Ruiz Manuel, Rouard Mathieu, Courtois Brigitte, Nguyen Trung-Bieu, Lacape Jean-Marc. 2004. In : 4th International Cotton Genome Intitiative ICGI-2004 Workshop. Book of abstracts, October 10-13, 2004, Hyderabad, India. s.l. : s.n., Résumé, p. 159. International Cotton Genome Initiative Workshop. 4, Hyderabad, Inde, 10 October 2004/13 October 2004.
[img]

Bactrop: A platform of genomic resources to study organization and evolution of tropical crop species [S04-3]. Piffanelli Pietro, Noa-Carrazana Juan Carlos, Clément Didier, Ciampi Ana, Vilarinhos Alberto Duarte, Thibivilliers Sandra, Lagoda Pierre, Sabau Xavier, Ruiz Manuel, Karkouri Khalid, Leroy Thierry, Billotte Norbert, Seguin Marc, Safar Jan, D'Hont Angélique, Glaszmann Jean-Christophe. 2003. In : 7th International Congress of Plant Molecular Biology, ISPMB 2003, Barcelona (Spain), June 23-28. Book of abstracts. ISPMB. Barcelone : ISPMB Office, Résumé, p. 58. International Congress of Plant Molecular Biology. 7, Barcelone, Espagne, 23 June 2003/28 June 2003.

Accreditation to supervise theses

Intégration des données et des connaissances appliquée à la génomique des plantes tropicales et méditerranéennes. Ruiz Manuel. 2012. Montpellier : UM2, 35 p. Habilitation à diriger des recherches : Systèmes intègres en biologie, agronomie, géosciences, hydrosciences, environnement (SIBAGHE) : Université Montpellier 2
[img]

This list was generated on Sun Sep 20 09:38:02 2020 CEST.