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Number of items: 160.

2020

Genome-wide genotyping elucidates the geographical diversification and dispersal of the polyploid and clonally propagated yam (Dioscorea alata L.). Sharif Bilal Muhammad, Burgarella Concetta, Cormier Fabien, Mournet Pierre, Causse Sandrine, Nguyen Van Kien, Kaoh Juliane, Rajaonah Mamy Tiana, Lakshan Senanayake Ravinda, Waki Jeffrey, Bhattacharjee Ranjana, Badara Gueye, Pachakkil Babil, Arnau Gemma, Chaïr Hâna. 2020. Annals of Botany:mcaa122, 10 p.
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A whole-genome worldwide molecular epidemiology approach for contagious caprine pleuropneumonia. Loire Etienne, Issa Ibrahim Abdoulkarim, Manso-Silvan Lucia, Lignereux Louis, Thiaucourt François. 2020. Heliyon, 6:e05146, 7 p.
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2018

Autosomal and mitochondrial adaptation following admixture: a case study on the honeybees of Reunion Island. Wragg David, Techer Maéva Angélique, Canale-Tabet Kamila, Basso Benjamin, Bidanel Jean-Pierre, Labarthe Emmanuelle, Bouchez Olivier, Le Conte Yves, Clémencet Johanna, Delatte Hélène, Vignal Alain. 2018. Genome Biology and Evolution, 10 (1) : pp. 220-238.
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Rice diversity panel provides accurate genomic predictions for complex traits in the progenies of biparental crosses involving members of the panel. Ben Hassen Manel, Cao Tuong-Vi, Bartholome Jérôme, Orasen G., Colombi C., Rakotomalala J., Razafinimpiasa L., Bertone C., Biselli Chiara, Volante Andrea, Desiderio Francesca, Jacquin Laval, Valè Giampiero, Ahmadi Nourollah. 2018. Theoretical and Applied Genetics, 131 (2) : pp. 417-435.
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2017

Adaptation of genetically monomorphic bacteria: evolution of copper resistance through multiple horizontal gene transfers of complex and versatile mobile genetic elements. Richard Damien, Ravigné Virginie, Rieux Adrien, Facon Benoît, Boyer Claudine, Boyer Karine, Grygiel Pierre, Javegny Stéphanie, Terville Marie Annabelle, Canteros B.I., Robene Isabelle, Vernière Christian, Chabirand Aude, Pruvost Olivier, Lefeuvre Pierre. 2017. Molecular Ecology, 26 (7), n.spéc. Microbial Local Adaptation : pp. 2131-2149.
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Construction of two genetic linkage maps of taro using single nucleotide polymorphism and microsatellite markers. Soulard Laurent, Mournet Pierre, Guitton Baptiste, Chaïr Hâna. 2017. Molecular Breeding, 37 (3):37, 15 p.
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Development of SNP markers present in expressed genes of the plant-pathogen interaction: Theobroma cacao - Moniliophtora perniciosa. Lemos Lívia Santos Lima, Gramacho Karina Peres, Pires José Luis, Ferreira Santos Rogério Mercês, Ganem Rodrigo Sousa, Costa Marcio Gilberto Cardoso, Micheli Fabienne. 2017. AgroTropica, 29 (2) : pp. 111-118.
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Diversité et origine génétique des espèces de la sous famille des Aurantioideae et décryptage des structures interspécifiques des génomes des agrumes modernes. Oueslati Bahri Amel. 2017. Tunis : Université de Tunis El Manar, 200 p. Thèse de doctorat : Biologie. Génétique et biologie moléculaire : Université de Tunis El Manar
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Evolution of the banana genome (Musa acuminata) is impacted by large chromosomal translocations. Martin Guillaume, Carreel Françoise, Coriton Olivier, Hervouet Catherine, Cardi Céline, Derouault Paco, Roques Danièle, Salmon Frédéric, Rouard Mathieu, Sardos Julie, Labadie Karine, Baurens Franc-Christophe, D'Hont Angélique. 2017. Molecular Biology and Evolution, 34 (9), 28 p.
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Experimental evaluation of faecal Escherichia coli and hepatitis E virus as biological indicators of contacts between domestic pigs and Eurasian wild boar. Barth S., Geue L., Hinsching A., Jenckel M., Schlosser J., Eiden Martin, Pietschmann J., Menge Christian, Beer Martin, Groschup Martin, Jori Ferran, Etter Eric, Blome S.. 2017. Transboundary and Emerging Diseases, 64 (2) : pp. 487-494.
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Exploiting genetic information to trace plant virus dispersal in landscapes. Picard Coralie, Dallot Sylvie, Brunker Kirstyn, Berthier Karine, Roumagnac Philippe, Soubeyrand Samuel, Jacquot Emmanuel, Thébaud Gaël. 2017. Annual Review of Phytopathology, 55 : pp. 139-160.
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Genetic variation and population structure of Oryza glaberrima and development of a mini-core collection using DArTseq. Ndjiondjop Marie-Noëlle, Semagn Kassa, Gouda Comlan Arnaud, Kpeki Sèdjro B., Tia Daniel Dro, Sow Mounirou, Goungoulou Alphonse, Sié Moussa, Perrier Xavier, Ghesquière Alain, Warburton Marilyn L.. 2017. Frontiers in Plant Science, 8:1748, 19 p.
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Genome-wide association analysis for heat tolerance at flowering detected a large set of genes involved in adaptation to thermal and other stresses. Lafarge Tanguy, Bueno Crisanta Sunio, Frouin Julien, Jacquin Laval, Courtois Brigitte, Ahmadi Nourollah. 2017. PloS One, 12 (2):e0171254, 27 p.
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Genome-wide identification and characterization of cacao WRKY transcription factors and analysis of their expression in response to witches' broom disease. Silva Monteiro de Almeida Dayanne, Do Amaral Daniel Oliveira Jordão, Del-Bem Luiz-Eduardo, Bronze dos Santos Emily, Santana Silva Raner José, Peres Gramacho Karina, Vincentz Michel, Micheli Fabienne. 2017. PloS One, 12 (10):e0187346, 23 p.
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Genomic preselection with genotyping-bysequencing increases performance of commercial oil palm hybrid crosses. Cros David, Bocs Stéphanie, Riou Virginie, Ortega Abboud Enrique, Tisne Sébastien, Argout Xavier, Pomies Virginie, Nodichao Leifi, Lubis Zulkifli, Cochard Benoît, Durand-Gasselin Tristan. 2017. BMC Genomics, 18:839, 17 p.
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Large-scale mitochondrial DNA analysis of native honey bee Apis mellifera populations reveals a new African subgroup private to the South West Indian Ocean islands. Techer Maéva Angélique, Clémencet Johanna, Simiand Christophe, Preeaduth Sookar, Hamza Abdou Azali, Reynaud Bernard, Delatte Hélène. 2017. BMC Genetics, 18:53, 21 p.
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Le génome du cacaoyer : du décodage de sa séquence jusqu'à l'étude de gènes impliqués dans des caractères agronomiques d'intérêt. Argout Xavier. 2017. Montpellier : Montpellier SupAgro, 238 p. Thèse de doctorat : Biologie, interactions, diversité adaptative des plantes : Montpellier SupAgro
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Phytophthora megakarya and Phytophthora palmivora, closely related causal agents of cacao black pod rot, underwent increases in genome sizes and gene numbers by different mechanisms. Ali Shahin, Shao Jonathan, Lary David J., Kronmiller Brent A., Shen Danyu, Strem Mary, Amoako-Attah Ishmael, Yaw Akrofi Andrew, Begoude Dider, Ten Hoopen Gerben Martijn, Coulibaly Klotioloma, Kébé Boubacar Ismaël, Melnick Rachel L., Guiltinan Mark J., Tyler Brett, Meinhardt Lyndel W., Bailey Bryan. 2017. Genome Biology and Evolution, 9 (3) : pp. 536-557.
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Tomato leaf curl Burkina Faso virus: A novel tomato-infecting monopartite begomovirus from Burkina Faso. Ouattara Alassane, Tiendrebeogo Fidèle, Lefeuvre Pierre, Claverie Sohini, Hoareau Murielle, Traoré Edgar Valentin, Barro Nicolas, Traoré Oumar, Lett Jean-Michel. 2017. Archives of Virology, 162 (5) : pp. 1427-1429.
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Transcriptome analysis of leaves, flowers and fruits perisperm of Coffea arabica L. reveals the differential expression of genes involved in raffinose biosynthesis. Ivamoto Suzana Tiemi, Reis Júnior Osvaldo, Silva Domingues Douglas, Dos Santos Tiago Benedito, Freitas de Oliveira Fernanda, Pot David, Leroy Thierry, Vieira Luiz Gonzaga Esteves, Falsarella Carazzolle Marcelo, Guimarães Pereira Gonçalo Amarante, Protasio Pereira Luiz Filipe. 2017. PloS One, 12 (1):e0169595, 17 p.
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A first higher-level time-calibrated phylogeny of antlions (Neuroptera: Myrmeleontidae). Michel Bruno, Clamens Anne-Laure, Béthoux Olivier, Kergoat Gael J., Condamine Fabien L.. 2017. Molecular Phylogenetics and Evolution, 107 : pp. 103-116.
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A la découverte des agents pathogènes et microorganismes des tiques de la Caraïbe par séquençage de nouvelle génération et PCR microfluidique en temps réel. Gondard Mathilde. 2017. Champs-sur-Marne : Université Paris-Est, 286 p. Thèse de doctorat : Sciences de la vie et de la santé : Université Paris-Est
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2016

Analyse de la diversité génétique des isolats de Magnaporthe oryzae du Burkina Faso et du Togo par les marqueurs microsatellites (SSRs). Kassankogno Abalo Itolou, Ouedraogo Ibrahima, Adreit Henri, Milazzo Joëlle, Ouédraogo Léonard, Sankara Philippe, Tharreau Didier. 2016. International Journal of Biological and Chemical Sciences, 10 (5) : pp. 2259-2267.
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Cloning, expression, molecular characterization and preliminary studies on immunomodulating properties of recombinant Trypanosoma congolense calreticulin. Bossard Géraldine, Grébaut Pascal, Thevenon Sophie, Seveno Martial, Berthier David, Holzmuller Philippe. 2016. Infection, Genetics and Evolution, 45 : pp. 320-331.
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Combating a global threat to a clonal crop: Banana black sigatoka pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) genomes reveal clues for disease control. Arango Isaza Rafael E., Diaz-Trujillo Caucasella, Dhillon Braham, Aerts Andrea, Carlier Jean, Crane Charles F., de Jong Tristan V., De Vries Ineke, Dietrich Robert, Farmer Andrew, Fortes Fereira Claudia, Garcia Suzana, Guzman Mauricio, Hamelin Richard C., Lindquist Erika, Mehrabi Rahim, Quiros Madrigal Olman, Schmutz Jeremy, Shapiro Harris, Reynolds Elizabeth, Scalliet Gabriel, Souza Manoel, Stergiopoulos Ioannis, Van der Lee Theo A.J., De Wit Pierre J. G. M., Zapater Marie-Françoise, Zwiers Lute-Harm, Grigoriev Igor, Goodwin Stephen B., Kema Gert H.J.. 2016. PLoS Genetics, 12 (8):e1005876, 36 p.
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Combining conservative and variable markers to infer the evolutionary history of Prunus subgen. Amygdalus s.l. under domestication. Delplancke Malou, Yazbek Mariana, Arrigo Nils, Espindola Anahi, Joly Hélène, Alvarez Nadir. 2016. Genetic Resources and Crop Evolution, 63 (2) : pp. 221-234.
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Contribution of predominant yeasts to the occurence of aroma compounds during cocoa bean fermentation. Kone Koumba-Mal, Guehi Tagro Simplice, Durand Noël, Ban-Koffi Louis, Berthiot Laurent, Fontana-Tachon Angélique, Brou Kouakou, Boulanger Renaud, Montet Didier. 2016. Food Research International, 89 (Part 2) : pp. 910-917.
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Dynamics of bacterial community composition in the malaria mosquito's epithelia. Tchioffo Majoline T., Boissière Anne, Abate Luc, Nsango Sandrine E., Bayibéki Albert N., Awono-Ambéné Parfait, Christen Richard, Gimonneau Geoffrey, Morlais Isabelle. 2016. Frontiers in Microbiology, 6 (1500), 9 p.
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First microsatellite markers developed from Cupuassu ESTs: Application in diversity analysis and cross-species transferability to cacao. Ferraz dos Santos Lucas, Moreira Fregapani Roberta, Falcão Loeni Ludke, Togawa Roberto Coiti, Costa Marcos Mota do Carmo, Lopes Uilson Vanderlei, Peres Gramacho Karina, Alves Rafael Moyses, Micheli Fabienne, Marcellino Lucilia Helena. 2016. PloS One, 11 (3):e0151074, 19 p.
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Genome-wide association mapping for root traits in a panel of rice accessions from Vietnam. Phung Nhung Thi Phuong, Mai Chung Duc, Hoang Giang Thi, Truong Hue Thi Minh, Lavarenne Jeremy, Gonin Mathieu, Nguyen Khanh L., Ha Thuy Thi, Do Vinh Nang, Gantet Pascal, Courtois Brigitte. 2016. BMC Plant Biology, 16 (1), 19 p.
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Genome-wide association mapping of sexual incompatibility genes in cacao (Theobroma cacao L.). da Silva Marcos Ramos, Clément Didier, Gramacho Karina Peres, Monteiro Wilson Reis, Argout Xavier, Lanaud Claire, Lopes Uilson Vanderlei. 2016. Tree Genetics and Genomes, 12 (3):62, 13 p.
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Geographical distribution of Cacao swollen shoot virus molecular variability in Ghana. Abrokwah Francis, Dzahini-Obiatey Henry, Galyuon Isaac, Osae-Awuku Francis, Muller Emmanuelle. 2016. Plant Disease, 100 (10) : pp. 2011-2017.
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Gigwa—Genotype investigator for genome-wide analyses. Sempere Guilhem, Philippe Florian, Dereeper Alexis, Ruiz Manuel, Sarah Gautier, Larmande Pierre. 2016. GigaScience, 5 (25), 9 p.
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Identification by the DArTseq method of the genetic origin of the Coffea canephora cultivated in Vietnam and Mexico. Garavito Andrea, Montagnon Christophe, Guyot Romain, Bertrand Benoît. 2016. BMC Plant Biology, 16 (242), 12 p.
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Identification of candidate genes for drought tolerance in coffee by high-throughput sequencing in the shoot apex of different Coffea arabica cultivars. Souto Mofatto Luciana, De Araújo Carneiro Fernanda, Gomes Vieira Natalia, Duarte Karoline Estefani, Vidal Ramon Oliveira, Alekcevetch Jean Carlos, Guitton Cotta Michelle, Verdeil Jean-Luc, Lapeyre-Montes Fabienne, Lartaud Marc, Leroy Thierry, De Bellis Fabien, Pot David, Costa Rodrigues Gustavo, Falsarella Carazzolle Marcelo, Guimarães Pereira Gonçalo Amarante, Carvalho Andrade Alan, Marraccini Pierre. 2016. BMC Plant Biology, 16 (94), 18 p.
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Improvement of the banana Musa acuminata reference sequence using NGS data and semi-automated bioinformatics methods. Martin Guillaume, Baurens Franc-Christophe, Droc Gaëtan, Rouard Mathieu, Cenci Alberto, Kilian Andrzej, Hastie Alex, Dolezelova M., Aury Jean-Marc, Alberti Adriana, Carreel Françoise, D'Hont Angélique. 2016. BMC Genomics, 17 (243), 12 p.
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In planta comparative transcriptomics of host-adapted strains of Ralstonia solanacearum. Ailloud Florent, Lowe Tiffany, Robène Isabelle, Cruveiller Stéphane, Allen Caitilyn, Prior Philippe. 2016. PeerJ, 4:e1549, 18 p.
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Metagenomic-based screening and molecular characterization of cowpea-infecting viruses in Burkina Faso. Palanga Essowé, Filloux Denis, Martin Darren Patrick, Fernandez Emmanuel, Gargani Daniel, Ferdinand Romain, Zabré Jean, Bouda Zakaria, Neya Bouma, Sawadogo Mahamadou, Traoré Oumar, Peterschmitt Michel, Roumagnac Philippe. 2016. PloS One, 11 (10):e0165188, 21 p.
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Molecular phylogeny of Southeast Asian arboreal murine rodents. Pagès Marie, Fabre Pierre-Henri, Chaval Yannick, Mortelliti Alessio, Nicolas Violaine, Wells Konstans, Michaux Johan, Lazzari Vincent. 2016. Zoologica Scripta, 45 (4) : pp. 349-364.
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Ongoing geographical spread of Tomato yellow leaf curl virus. Mabvakure Batsirai, Martin Darren Patrick, Kraberger Simona, Cloete Leendert, van Brunschot Sharon, Geering Andrew D., Thomas John, Bananej Kaveh, Lett Jean-Michel, Lefeuvre Pierre, Varsani Arvind, Harkins Gordon William. 2016. Virology, 498 : pp. 257-264.
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PCR-based identification of cacao black pod causal agents and identification of biological factors possibly contributing to Phytophthora megakarya's field dominance in West Africa. Ali Shahin, Amoako-Attah Ishmael, Bailey Rebecca, Strem Mary, Schmidt Martha, Yaw Akrofi Andrew, Surujdeo-Maharaj Surendra, Kolawole Oluwaseun O., Begoude Dider, Ten Hoopen Gerben Martijn, Goss Erica, Phillips-Mora Wilbert, Meinhardt Lyndel W., Bailey Bryan. 2016. Plant Pathology, 65 (7) : pp. 1095-1108.
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Phylogenetic origin of limes and lemons revealed by cytoplasmic and nuclear markers. Curk Franck, Ollitrault Frédérique, Garcia-Lor Andrés, Luro François, Navarro Luis, Ollitrault Patrick. 2016. Annals of Botany, 117 (4) : pp. 565-583.

Reappraisal of Hydatigera taeniaeformis (Batsch, 1786) (Cestoda: Taeniidae) sensu lato with description of Hydatigera kamiyai n. sp. Lavikainen Antti, Iwaki Takashi, Haukisalmi Voitto, Konyaev Sergey V., Casiraghi Maurizio, Dokuchaev Nikolai E., Galimberti Andrea, Halajian Ali, Henttonen Heikki, Ichikawa-Seki Madoka, Itagaki Tadashi, Krivopalov Anton V., Meri Seppo, Morand Serge, Näreaho Anu, Olsson Gert E., Ribas Alexis, Terefe Yitagele, Nakao Minoru. 2016. International Journal for Parasitology, 46 (5-6) : pp. 361-374.
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Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity. Bredeson Jessen V., Lyons Jessica B., Prochnik Simon, Wu Guohong Albert, Ha Cindy M., Edsinger-Gonzales Eric, Grimwood Jane, Schmutz Jeremy, Rabbi Ismail Y., Egesi Chiedozie, Nauluvula Poasa, Lebot Vincent, Ndunguru Joseph, Mkamilo Geoffrey, Bart Rebecca, Setter Tim, Gleadow Roslyn M., Kulakow Peter, Ferguson Morag E., Rounsley Steve, Rokhsar Daniel S.. 2016. Nature Biotechnology, 34 (5) : pp. 562-570.
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Shotgun sequencing of the mitochondrial genome of the Aldabra giant tortoise (Aldabrachelys gigantea). Besnard Guillaume, Thèves Catherine, Mata Xavier, Holota Hélène, Rakotozafy Lucien M.A., Pedrono Miguel. 2016. Mitochondrial DNA. Part A, 27 (6) : pp. 4543-4544.
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Towards a molecular taxonomic key of the Aurantioideae subfamily using chloroplastic SNP diagnostic markers of the main clades genotyped by competitive allele-specific PCR. Oueslati Amel, Ollitrault Frédérique, Baraket Ghada, Salhi-Hannachi Amel, Navarro Luis, Ollitrault Patrick. 2016. BMC Genetics, 17 (118), 14 p.
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Transcriptome analysis in Coffea eugenioides, an Arabica coffee ancestor, reveals differentially expressed genes in leaves and fruits. Yuyama Priscilla Mary, Reis Júnior Osvaldo, Ivamoto Suzana Tiemi, Domingues Douglas S., Carazzolle Marcelo Falsarella, Pereira Gonçalo Amarante Guimarães, Charmetant Pierre, Leroy Thierry, Pereira Luiz Filipe P.. 2016. Molecular Genetics and Genomics, 291 (1) : pp. 323-336.
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Transcriptome analysis revealed that a quorum sensing system regulates the transfer of the pAt megaplasmid in Agrobacterium tumefaciens. Mhedbi-Hajri Nadia, Yahiaoui Noura, Mondy Samuel, Hue Nathalie, Pelissier Cyril, Faure Denis, Dessaux Y.. 2016. BMC Genomics, 17 (661), 14 p.
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Whole-genome sequences of Xanthomonas euvesicatoria strains clarify taxonomy and reveal a stepwise erosion of type 3 effectors. Barak Jeri D., Vancheva Taca, Lefeuvre Pierre, Jones Jeffrey B., Timilsina Sujan, Minsavage Gerald V., Vallad Gary E., Koebnik Ralf. 2016. Frontiers in Plant Science, 7 (1805), 12 p.
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2015

Combined sanger and ngs sequence analysis of the myostatin gene (mstn) in the Camelus dromedarius species. Muzzachi S., Burger P., Fitak Robert Rodgers, Oulmouden A., Cherifi Y., Yahyaoui H., Zayed M.A., Lacalandra G.M., Faye Bernard, Ciani E.. 2015. Veterinariâ, 42 (2), n.spéc. Silk road camel: The camelids, main stake for sustainable development : pp. 353-355. 4th Conference of the International Society of Camelid Research and Development/ISOCARD 2015. 4, Almaty, Kazakhstan, 8 June 2015/12 June 2015.
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Comparative genomics of a cannabis pathogen reveals insight into the evolution of pathogenicity in Xanthomonas. Jacobs Jonathan M., Pesce Céline, Lefeuvre Pierre, Koebnik Ralf. 2015. Frontiers in Plant Science, 6 (431), 13 p.
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Development and GBS-genotyping of introgression lines (ILs) using two wild species of rice, O. meridionalis and O. rufipogon, in a common recurrent parent, O. sativa cv. Curinga. Arbelaez Juan David, Moreno Laura, Singh Namrata, Tung Chih-Wei, Maron Lyza G., Ospina Yolima, Martinez César. P, Grenier Cécile, Lorieux Mathias, McCouch Susan. 2015. Molecular Breeding, 35 (2) : pp. 81-99.
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Discrimination des fruits issus de l'agriculture biologique par analyse comparative de leurs communautés microbiennes. Bigot Céline. 2015. Montpellier : Montpellier SupAgro, 204 p. Thèse de doctorat : Biotechnologie, microbiologie : Montpellier SupAgro Centre international d'études supérieures en sciences agronomiques
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Discrimination des procédés de transformation post-récolte du cacao et du café par analyse globale de l'écologie microbienne. Hamdouche Yasmine. 2015. Montpellier : Montpellier SupAgro, 292 p. Thèse de doctorat : Biotechnologie, Microbiologie : Montpellier SupAgro Centre international d'études supérieures en sciences agronomiques
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Draft genome sequences of two Xanthomonas vesicatoria strains from the Balkan peninsula. Vancheva Taca, Bogatzevska Nevena, Moncheva Penka, Lefeuvre Pierre, Koebnik Ralf. 2015. Genome Announcements, 3 (1):e01558-14, 2 p.
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Full genome sequence analysis of two isolates reveals a novel Xanthomonas species close to the sugarcane pathogen Xanthomonas albilineans. Pieretti Isabelle, Cociancich Stéphane, Bolot Stéphanie, Carrère Sébastien, Morisset Alexandre, Rott Philippe, Royer Monique. 2015. Genes, 6 (3) : pp. 714-733.
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Genetic diversity of the endemic honeybee: Apis mellifera unicolor (Hymenoptera: Apidae) in Madagascar. Rasolofoarivao Henriette, Clémencet Johanna, Techer Maéva Angélique, Raveloson-Ravaomanarivo Lala Harivelo, Reynaud Bernard, Delatte Hélène. 2015. Apidologie, 46 (6) : pp. 735-747.
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Genome and phylogenetic analyses of Trypanosoma evansi reveal extensive similarity to T. brucei and multiple independent origins for dyskinetoplasty. Carnes Jason, Anupama Atashi, Balmer Olivier, Jackson Andrew, Lewis Michael, Brown Rob, Cestari Igor, Desquesnes Marc, Gendrin Claire, Hertz-Fowler Christiane, Imamura Hideo, Ivens Alasdair, Koreny Ludek, Lai De-Hua, MacLeod Annette, McDermott Suzanne M., Merritt Chris, Monnerat Severine, Moon Wonjong, Myler Peter, Phan Isabelle, Ramasamy Gowthaman, Sivam Dhileep, Lun Zhao-Rong, Lukes Julius, Stuart Ken, Schnaufer Achim. 2015. PLoS Neglected Tropical Diseases, 9 (1):e3404, 21 p.
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High-Quality Draft Genome Sequence of the Xanthomonas translucens pv. cerealis Pathotype Strain CFBP 2541. Pesce Céline, Bolot Stéphanie, Cunnac Sébastien, Portier Perrine, Fischer-Le-Caux Marion, Jacques Marie Agnès, Gagnevin Lionel, Arlat Mathieu, Noel Laurent D., Carrère Sébastien, Bragard Claude, Koebnik Ralf. 2015. Genome Announcements, 3 (1):e0157414, 2 p.
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Identification and development of new polymorphic microsatellite markers using genome assembly for Ganoderma boninense, causal agent of oil palm basal stem rot disease. Merciere Maxime, Laybats Anthony, Carasco-Lacombe Catherine, Tan Joon Sheong, Klopp Christophe, Durand-Gasselin Tristan, Alwee Sharifah Shahrul Rabiah Syed, Camus-Kulandaivelu Létizia, Breton Frédéric. 2015. Mycological Progress, 14 (11):103, 11 p.
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Le pouvoir pathogène chez Ralstonia solanacearum phylotype II : génomique intégrative et paysages transcriptomiques en relation avec l'adaptation à l'hôte. Ailloud Florent. 2015. Saint-Denis : Université de la Réunion, 222 p. Thèse de doctorat : Microbiologie. Phytopathologie : Université de la Réunion
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New multilocus variable-number tandem-repeat analysis tool for surveillance and local epidemiology of bacterial leaf blight and bacterial leaf streak of rice caused by Xanthomonas oryzae. Poulin Lucie, Grygiel Pierre, Magne Maxime, Gagnevin Lionel, Rodríguez-R Luis Miguel, Forero Serna Natalia, Zhao Shuai, El Rafil M., Dao S., Tekete C., Wonni Issa, Kolta O., Pruvost Olivier, Verdier Valérie, Vernière Christian, Koebnik Ralf. 2015. Applied and Environmental Microbiology, 81 (2) : pp. 688-698.
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Nuclear species-diagnostic SNP markers mined from 454 amplicon sequencing reveal admixture genomic structure of modern Citrus varieties. Curk Franck, Ancillo Gema, Ollitrault Frédérique, Perrier Xavier, Jacquemoud-Collet Jean-Pierre, Garcia-Lor Andrés, Navarro Luis, Ollitrault Patrick. 2015. PloS One, 10 (5):e0125628, 25 p.
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Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping. Rebolledo Maria Camila, Dingkuhn Michaël, Courtois Brigitte, Gibon Yves, Clément-Vidal Anne, Cruz Daniel F., Duitama Jorge, Lorieux Mathias, Luquet Delphine. 2015. Journal of Experimental Botany, 66 (18), n.spéc. Phenotyping in Plants : pp. 5555-5566.
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Sequence and polymorphism analysis of the camel (Camelus dromedarius) myostatin gene. Muzzachi S., Oulmouden A., Cherifi Y., Yahyaoui H., Zayed M.A., Burger P., Lacalandra G.M., Faye Bernard, Ciani E.. 2015. Emirates Journal of Food and Agriculture, 27 (4) : pp. 367-373.
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The chloroplast genome of the hexaploid Spartina maritima (Poaceae, Chloridoideae): Comparative analyses and molecular dating. Rousseau-Gueutin Mathieu, Bellot Sidonie, Martin Guillaume, Boutte Julien, Chelaifa Houda, Lima Oscar, Michon-Coudouel Sophie, Naquin Delphine, Salmon Armel, Ainouche K., Ainouche Malika Lily. 2015. Molecular Phylogenetics and Evolution, 93 : pp. 5-16.
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2014

Appearances can be deceptive: Revealing a hidden viral infection with deep sequencing in a plant quarantine Context. Candresse Thierry, Filloux Denis, Muhire Brejnev, Julian Charlotte, Galzi Serge, Fort Guillaume, Bernardo Pauline, Daugrois Jean-Heinrich, Fernandez Emmanuel, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2014. PloS One, 9 (7):e102945, 13 p.
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Caractérisation des différences de structures chromosomiques dans l'espèce Musa acuminata par re-séquençage ; le cas de l'accession Pahang. Martin Guillaume. 2014. Montpellier : Montpellier SupAgro, 299 p. Thèse de doctorat : Systèmes intégrés en biologie, agronomie, géosciences, hydrosciences, environnement (SIBAGHE). Biologie intégrative des plantes : Montpellier SupAgro Centre international d'études supérieures en sciences agronomiques
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Complete genome sequence of a field strain of peste des petits ruminants virus Iisolated during 2010-2014 epidemics in Senegal. Salami Habib, Croville Guillaume, Kwiatek Olivier, Mariette Jérôme, Klopp Christophe, Valière Sophie, Guerin Jean-Luc, Lo Moustapha, Thiongane Yaya, Albina Emmanuel, Libeau Geneviève. 2014. Genome Announcements, 2 (5):e00772, 2 p.
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Complete genome sequences of lineage III peste des petits ruminants viruses from the Middle East and East Africa. Muniraju Murali, Munir Muhammad, Banyard Ashley C., Ayebazibwe Chrisostom, Wensman Jonas, Zohari Siamak, Berg Mikael, Parthiban AravindhBabu R., Mahapatra Mana, Libeau Geneviève, Batten Carrie, Parida Satya. 2014. Genome Announcements, 2 (5):e01023, 2 p.
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Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies. Mariac Cédric, Scarcelli Nora, Pouzadou Juliette, Barnaud Adeline, Billot Claire, Faye Adama, Kougbeadjo Ayite, Maillol Vincent, Martin Guillaume, Sabot François, Santoni Sylvain, Vigouroux Yves, Couvreur Thomas. 2014. Molecular Ecology Resources, 14 (6) : pp. 1103-1113.
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De novo transcriptome analysis of Hevea brasiliensis# tissues by RNA-seq and screening for molecular markers. Rippel Salgado Leonardo, Martins Koop Daniela, Guariz Pinheiro Daniel, Rivallan Ronan, Le Guen Vincent, Nicolás Marisa Fabiana, De Almeida Luiz Gonzaga Paula, Ribeiro Rocha Viviani, Magalhaes Milena, Gerber Alexandra Lehmkuhl, Figueira Antonio, De Mattos Cascardo Julio Cézar, Ribeiro de Vasconcelos Ana Tereza, Araújo Silva Wilson, Coutinho Luiz Lehmann, Garcia Dominique. 2014. BMC Genomics, 15 (236), 15 p.
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Draft genome sequence of Xanthomonas axonopodis pv. allii strain CFBP 6369. Gagnevin Lionel, Bolot Stéphanie, Gordon Jonathan, Pruvost Olivier, Vernière Christian, Robène Isabelle, Arlat Mathieu, Noel Laurent D., Carrère Sébastien, Jacques Marie Agnès, Koebnik Ralf. 2014. Genome Announcements, 2 (4):e00727, 2 p.
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Genetic relationships of some Citrus genotypes based on the candidate iron chlorosis genes. Aka Kacar Yildiz, Simsek Özhan, Dönmez Dicle, Boncuk Melda, Yesiloglu Turgut, Ollitrault Patrick. 2014. Turkish Journal of Agriculture and Forestry, 38 (3) : pp. 340-347.
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Moko disease-causing strains of #Ralstonia solanacearum" from Brazil extend known diversity in paraphyletic phylotype II. Albuquerque Greecy M.R., Santos Liliana A., Felix Kátia C.S., Rollemberg Christtianno L., Silva Adriano M.F., Souza Elineide B., Cellier Gilles, Prior Philippe, Mariano Rosa L.R.. 2014. Phytopathology, 104 (11) : pp. 1175-1182.
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Phylogenetic reconstruction methods: An overview. De Bruyn Alexandre, Martin Darren Patrick, Lefeuvre Pierre. 2014. In : Molecular Plant Taxonomy. by Pascale Besse (ed.). New York : Humana Press, pp. 257-277. (Mehtods in Molecular Biology, 1115) ISBN 978-1-62703-766-2
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Positional cloning of the rice male sterility gene ms-IR36, widely used in the inter-crossing phase of recurrent selection schemes. Frouin Julien, Filloux Denis, Taillebois James E., Grenier Cécile, Montes Fabienne, De Lamotte Frédéric, Verdeil Jean-Luc, Courtois Brigitte, Ahmadi Nourollah. 2014. Molecular Breeding, 33 (3) : pp. 555-567.
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Pyrosequencing evidences the impact of cropping on soil bacterial and fungal diversity in Laos tropical grassland. Lienhard Pascal, Terrat Sébastien, Chemidlin Prévost-Bouré Nicolas, Nowak Virginie, Régnier Tiffanie, Sayphoummie Sengpanh, Panyasiri Khamkèo, Tivet Florent, Mathieu Olivier, Levêque Jean, Maron Pierre-Alain, Ranjard Lionel. 2014. Agronomy for Sustainable Development, 34 (2) : pp. 525-533.
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Resolving the polyphyletic nature of Pyricularia (Pyriculariaceae). Klaubauf S., Tharreau Didier, Fournier Elisabeth, Crous Pedro W., De Vries Ronald P., Lebrun Marc-Henri. 2014. Studies in Mycology, 79 : pp. 85-120.
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Sequence and expression analyses of ethylene response factors highly expressed in latex cells from Hevea brasiliensis. Piyatrakul Piyanuch, Yang Meng, Putranto Riza Arief, Pirrello Julien, Dessailly Florence, Hu Songnian, Summo Marilyne, Theeravatanasuk Kannikar, Leclercq Julie, Kuswanhadi, Montoro Pascal. 2014. PloS One, 9 (6):e99367, 20 p.
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The common evolutionary history of badnaviruses and banana. Iskra Caruana Marie-Line, Duroy Pierre-Olivier, Chabannes Matthieu, Muller Emmanuelle. 2014. Infection, Genetics and Evolution, 21 : pp. 83-89.
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The genomic substrate for adaptive radiation in African cichlid fish. Brawand David, Wagner Catherine E., Li Yang I., Malinsky Milan, Keller Irène, Fan Shaohua, Simakov Oleg, Ng Alvin Y., Lim Zhi Wei, Bezault Etienne, Turner-Maier Jason, Johnson Jeremy, Alcazar Rosa, Noh Hyun Ji, Russell Pamela, Aken Bronwen, Alföldi Jessica, Amemiya Chris, Azzouzi Naoual, Baroiller Jean-François, Barloy-Hubler Frédérique, Berlin Aaron, Bloomquist Ryan, Carleton Karen L., Conte Matthew A., D'Cotta Helena, Eshel Orly, Gaffney Leslie, Galibert Francis, Gante Hugo F., Gnerre Sante, Greuter Lucie, Guyon Richard, Haddad Nathalie S., Haerty Wilfried, Harris Rayna M., Hofmann Hans A., Hourlier Thibaut, Hulata Gideon, Jaffe David B., Lara Marcia, Lee Alison P., MacCallum Iain, Mwaiko Salome, Nikaido Masato, Nishihara Hidenori, Ozouf-Costaz Catherine, Penman David J., Przybylski Darius, Rakotomanga Michelle, Renn Suzy C. P., Ribeiro Filipe J., Ron Micha, Salzburger Walter, Sanchez-Pulido Luis, Santos Emilia, Searle Steve, Sharpe Ted, Swofford Ross, Tan Frederick J., Williams Louise, Young Sarah, Yin Shuangye, Okada Norihiro, Kocher Thomas D., Miska Eric A., Lander Eric S., Venkatesh Byrappa, Fernald Russell D., Meyer Axel, Ponting Chris P., Streelman J. Todd, Lindblad-Toh Kerstin, Seehausen Ole, Di Palma Frederica. 2014. Nature, 513 (7518) : pp. 375-381.
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The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants. Porcel Betina M., Denoeud France, Opperdoes Fred, Noël Benjamin, Madoui Mohammed-Amine, Hammarton Tansy, Field Mark, Da Silva Corinne, Couloux Arnaud, Poulain Julie, Katinka Michael, Jabbari Kamel, Aury Jean-Marc, Campbell David A., Cintron Roxana, Dickens Nicolas, Docampo Roberto, Sturm Nancy R., Koumandou Lila, Fabre Sandrine, Flegontov Pavel, Lukes Julius, Michaeli Shula, Mottram Jeremy, Szoor Balazs, Zilberstein Dan, Bringaud Frédéric, Wincker Patrick, Dollet Michel. 2014. PLoS Genetics, 10 (2):e1004007, 24 p.
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2013

Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations. Spindel Jennifer, Wright Mark, Chen Charles, Cobb Joshua, Gage Joseph, Harrington Sandra, Lorieux Mathias, Ahmadi Nourollah, McCouch Susan. 2013. Theoretical and Applied Genetics, 126 (11) : pp. 2699-2716.
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Citrus (Rustaceae) SNP markers based on competitive allele-specific PCR; transferability across the aurantioideaz subfamily. Garcia-Lor Andrés, Ancillo Gema, Navarro Luis, Ollitrault Patrick. 2013. Applications in Plant Sciences, 1 (4), 6 p.
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Cytological and molecular characterization of three gametoclones of Citrus clementina. Germanà Maria Antonietta, Aleza Pablo, Carrera Esther, Chen Chunxian, Chiancone Benedetta, Costantino Gilles, Dambier Dominique, Deng Xiuxin, Federici Claire T., Froelicher Yann, Guo Wenwu, Ibáñez Victoria, Juarez José, Kwok Kevin, Luro François, Machado Marcos Antonio, Naranjo Miguel Angel, Navarro Luis, Ollitrault Patrick, Rios Gabino, Roose Mikeal L., Talon Manuel, Xu Qiang, Gmitter Frederick G. Jr.. 2013. BMC Plant Biology, 13 (1), 8 p.
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Diversité des symbioses ectomycorhiziennes dans les écosystèmes forestiers naturels sur sols ultramafiques de Nouvelle-Caledonie. Prin Yves, Ducousso Marc, Tassin Jacques, Béna Gilles, Jourand Philippe, Dumontet Vincent, Moulin Lionel, Contesto Céline, Ambrosi J.P., Chaintreuil Clémence, Dreyfus Bernard, Lebrun Michel. 2013. In : Des champignons symbiotiques contre la désertification : écosystèmes méditerranéens, tropicaux et insulaires. Duponnois Robin (ed.), Hafidi Mohamed (ed.), Ndoye Ibrahima (ed.), Ramanankierana Heriniaina (ed.), Bâ Amadou Moustapha (ed.). Marseille : IRD [Marseille], pp. 444-473. ISBN 978-2-7592-1827-5
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Evolution et spécialisation du pouvoir pathogène de Xanthomonas citri pv. citri : rôle des effecteurs de type 3. Escalon Aline. 2013. Saint-Denis : Université de la Réunion, 258 p. Thèse de doctorat : Sciences : Université de la Réunion
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First report of sequence type 1, pathotype A Xanthomonas citri pv. citri from lime and lemon fruit originating from Bangladesh. Vernière Christian, Vital Karine, Boyer Claudine, Pruvost Olivier, Carter B.A.. 2013. Plant Disease, 97 (6) : p. 836.
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Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads. Darrasse Armelle, Carrère Sébastien, Barbe Valérie, Boureau Tristan, Arrieta-Ortiz Mario L., Bonneau Sophie, Briand Martial, Brin Christelle, Cociancich Stéphane, Durand Karine, Fouteau Stéphanie, Gagnevin Lionel, Guérin Fabien, Guy Endrick, Indiana Arnaud, Koebnik Ralf, Lauber Emmanuelle, Munoz Alejandra, Noel Laurent D., Pieretti Isabelle, Poussier Stéphane, Pruvost Olivier, Robène-Soustrade Isabelle, Rott Philippe, Royer Monique, Serres-Giardi Laurana, Szurek Boris, Van Sluys Marie-Anne, Verdier Valérie, Vernière Christian, Arlat Mathieu, Manceau Charles, Jacques Marie Agnès. 2013. BMC Genomics, 14 (761), 30 p.
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Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. manihotis strain CIO151. Arrieta-Ortiz Mario L., Rodríguez-R Luis Miguel, Pérez-Quintero Alvaro L., Poulin Lucie, Díaz Ana C., Arias Rojas Nathalia, Trujillo Cesar, Restrepo Benavides Mariana, Bart Rebecca, Boch Jen, Boureau Tristan, Darrasse Armelle, David Perrine, Dugé de Bernonville Thomas, Fontanilla Paula, Gagnevin Lionel, Guérin Fabien, Jacques Marie Agnès, Lauber Emmanuelle, Lefeuvre Pierre, Medina Cesar, Medina Edgar, Montenegro Nathaly, Munoz Alejandra, Noel Laurent D., Ortiz Quiñoes Juan F., Osorio Daniela, Pardo Carolina, Patil Prabhu B., Poussier Stéphane, Pruvost Olivier, Robène-Soustrade Isabelle, Ryan Robert P., Tabima Javier, Urrego Morales Osacar G., Vernière Christian, Carrère Sébastien, Verdier Valérie, Szurek Boris, Restrepo Silvia, López Camilo, Koebnik Ralf, Bernal Adriana. 2013. PloS One, 8 (11):e79704, 18 p.
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High-Quality Draft Genome Sequences of Two Xanthomonas citri pv. malvacearum Strains. Cunnac Sébastien, Bolot Stéphanie, Forero Serna Natalia, Ortiz Erika, Szurek Boris, Noel Laurent D., Arlat Mathieu, Jacques Marie Agnès, Gagnevin Lionel, Carrère Sébastien, Nicole Michel, Koebnik Ralf. 2013. Genome Announcements, 1 (4):e00674, 2 p.
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Identification of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing. Duan Cuifang, Argout Xavier, Gebelin Virginie, Summo Marilyne, Dufayard Jean-François, Leclercq Julie, Kuswanhadi, Piyatrakul Piyanuch, Pirrello Julien, Rio Maryannick, Champion Anthony, Montoro Pascal. 2013. BMC Genomics, 14 (30), 22 p.
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Métagénomique virale et pathologie Une histoire récente. Bernardo Pauline, Albina Emmanuel, Eloit Marc, Roumagnac Philippe. 2013. MS - Médecine Sciences, 29 (5) : pp. 501-508.
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New avian paramyxoviruses type I strains identified in Africa provide new outcomes for phylogeny reconstruction and genotype classification. Servan de Almeida Renata, Hammoumi Saliha, Gil Patricia, Briand François-Xavier, Molia Sophie, Gaidet Nicolas, Cappelle Julien, Chevalier Véronique, Balança Gilles, Traoré Abdallah, Grillet Colette, Fridolin Maminiaina Olivier, Guendouz Samia, Dakouo Martin, Samake Kassim, Bezeid Ould El Mamy, Diarra Abbas, Chaka Hassen, Goutard Flavie, Thompson Peter, Martinez Dominique, Jestin Véronique, Albina Emmanuel. 2013. PloS One, 8 (10):e76413, 16 p.
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Organisation et évolution de familles de gènes impliqués dans la maturation du fruit chez le bananier. Jourda Cyril. 2013. Montpellier : UM2, 353 p. Thèse de doctorat : Systèmes intégrés en biologie, agronomie, géosciences, hydrosciences et environnement (SIBAGHE). Biologie intégrative des plantes : Université Montpellier 2
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Organización de la diversidad genética de los cítricos. Garcia Lor Andrés. 2013. Valence : Universidad Politecnica de Valencia, 259 p. Tesis doctoral : Universidad Politecnica de Valencia
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Population dynamics of Glossina palpalis gambiensis symbionts, Sodalis glossinidius, and Wigglesworthia glossinidia, throughout host-fly development. Soumana Illiassou Hamidou, Berthier David, Tchicaya Bernadette, Thevenon Sophie, Njiokou Flobert, Cuny Gérard, Geiger Anne. 2013. Infection, Genetics and Evolution, 13 (1) : pp. 41-48.
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The complete chloroplast genome of banana (Musa acuminata, Zingiberales): Insight into plastid monocotyledon evolution. Martin Guillaume, Baurens Franc-Christophe, Cardi Céline, Aury Jean-Marc, D'Hont Angélique. 2013. PloS One, 8 (6):e67350, 10 p.
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The small RNA profile in latex from Hevea brasiliensis trees is affected by tapping panel dryness. Gebelin Virginie, Leclercq Julie, Kuswanhadi, Argout Xavier, Chaidamsari Tetty, Hu Songnian, Tang Chaorong, Sarah Gautier, Yang Meng, Montoro Pascal. 2013. Tree Physiology, 33 (10) : pp. 1084-1098.
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2012

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Biodegration of treated wood waste by native fungal communities of tropical soil in French Guiana. Zaremski Alba, Gastonguay Louis, Zaremski Clara, Chaffanel Fanny, Beauchêne Jacques, Le Floch Gaetan. 2012. In : Proceedings IRG Annual Meeting, 6-10 May, 2012, Kuala Lumpur, Malaysia. IRG. s.l. : s.n., 18 p. International Research Group on Wood Protection Annual Meeting. 43, Kuala lumpur, Malaisie, 6 May 2012/10 May 2012.

Chado Controller : Advanced annotation management with a community annotation system. Guignon Valentin, Droc Gaëtan, Alaux Michael, Baurens Franc-Christophe, Garsmeur Olivier, Poiron Claire, Carver Timothy L.W., Rouard Mathieu, Bocs Stéphanie. 2012. Bioinformatics, 28 (7) : pp. 1054-1056.
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Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton. Lacape Jean-Marc, Claverie Michel, Vidal Ramon Oliveira, Carazzolle Marcelo Falsarella, Guimarães Pereira Gonçalo Amarante, Ruiz Manuel, Pré Martial, Llewellyn Danny, Al-Ghazi Yves, Jacobs John, Dereeper Alexis, Huguet Stéphanie, Giband Marc, Lanaud Claire. 2012. PloS One, 7 (11):e48855, 16 p.
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Development of indel markers from Citrus clementina (Rutaceae) BAC-end sequences and interspecific transferability in Citrus. Ollitrault Frédérique, Terol Javier F., Martin Alena Alonso, Pina José Antonio, Navarro Luis, Talon Manuel, Ollitrault Patrick. 2012. American Journal of Botany, 99 (7), e268-e273
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Dossier de candidature au diplôme d'habilitation à diriger des recherches. Perin Christophe. 2012. Montpellier : UM2, 61 p. Habilitation à diriger des recherches : Université Montpellier 2
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Genetic data from avian influenza and avian paramyxoviruses generated by the European network of excellence (EPIZONE) between 2006 and 2011-Review and recommendations for surveillance. Dundon William G., Heidari Alireza, Fusaro Alice, Monne Isabella, Beato Maria Serena, Cattoli Giovanni, Koch Guus, Starick Elke, Brown Ian H., Aldous Elisabeth W., Briand François-Xavier, Le Gall-Reculé Ghislaine, Jestin Véronique, Jorgensen Poul H., Berg Mikael, Zohari Siamak, Metreveli Giorgi, Munir Muhammad, Stahl Karl, Albina Emmanuel, Hammoumi Saliha, Gil Patricia, Servan de Almeida Renata, Smietanka Krzysztof, Domanska-Blicharz Katarzyna, Minta Zenon, Van Borm Steven, Van den Berg Thierry, Moreno Martin Ana, Barbieri Ilaria, Capua Ilaria. 2012. Veterinary Microbiology, 154 (3-4) : pp. 209-221.
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Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets. Gebelin Virginie, Argout Xavier, Engchuan Worrawat, Pitollat Bertrand, Duan Cuifang, Montoro Pascal, Leclercq Julie. 2012. BMC Plant Biology, 12 (12), 18 p.
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Microsatellite markers for population studies of Phytophthora megakarya (Pythiaceae), a cacao pathogen in Africa. Mfegue Crescence Virginie, Herail Claude, Adreit Henri, Mbenoum Michael, Techou Zaccharie, Ten Hoopen Gerben Martijn, Tharreau Didier, Ducamp Michel. 2012. American Journal of Botany, 99 (9), e353-e356
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Phylogeny and molecular typing of Mycoplasma agalactiae and Mycoplasma bovis by multilocus sequencing. Manso-Silvan Lucia, Dupuy Virginie, Lysnyansky Inna, Ozdemir Umit, Thiaucourt François. 2012. Veterinary Microbiology, 161 (1-2) : pp. 104-112.
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Specific patterns of genetic diversity among aromatic rice varieties in Myanmar. Myint Khin M., Courtois Brigitte, Risterucci Ange-Marie, Frouin Julien, Soe Khin, Thet Khin M., Vanavichit Apichart, Glaszmann Jean-Christophe. 2012. Rice, 5 (20), 13 p.
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The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. D'Hont Angélique, Denoeud France, Aury Jean-Marc, Baurens Franc-Christophe, Carreel Françoise, Garsmeur Olivier, Noël Benjamin, Bocs Stéphanie, Droc Gaëtan, Rouard Mathieu, Da Silva Corinne, Jabbari Kamel, Cardi Céline, Poulain Julie, Souquet Marlène, Labadie Karine, Jourda Cyril, Lengellé Juliette, Rodier-Goud Marguerite, Alberti Adriana, Bernard Maria, Correa Margot, Ayyampalayam Saravanaraj, Mckain Michael R, Leebens-Mack Jim, Burgess Diane, Freeling Mike, Mbéguié-A-Mbéguié Didier, Chabannes Matthieu, Wicker Thomas, Panaud Olivier, Barbosa Jose, Hribova Eva, Heslop Harrison Pat, Habas Rémy, Rivallan Ronan, François Philippe, Poiron Claire, Kilian Andrzej, Burthia Dheema, Jenny Christophe, Bakry Frédéric, Brown Spencer, Guignon Valentin, Kema Gert H.J., Dita Miguel A., Waalwijk Cees, Joseph Steeve, Dievart Anne, Jaillon Olivier, Leclercq Julie, Argout Xavier, Lyons Eric, Almeida Ana, Jeridi Mouna, Dolezel Jaroslav, Roux Nicolas, Risterucci Ange-Marie, Weissenbach Jean, Ruiz Manuel, Glaszmann Jean-Christophe, Quetier Francis, Yahiaoui Nabila, Wincker Patrick. 2012. Nature, 488 (7410) : pp. 213-217.
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2011

Complete genome sequence of a dahlia common mosaic virus isolate from New Zealand. Hadfield James, Linderme Daphné, Shepherd Dionne Natalie, Bezuidenhout Marion, Lefeuvre Pierre, Martin Darren Patrick, Varsani Arvind. 2011. Archives of Virology, 156 (12) : pp. 2297-2301.
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GNPAnnot community annotation system applied to sugarcane bac clone sequences (W572). Guignon Valentin, Droc Gaëtan, Garsmeur Olivier, Charron Carine, D'Hont Angélique, Bocs Stéphanie. 2011. In : Abstracts of Plant and Animal Genomes XIXth Conference, San Diego, CA (USA), January 15-19, 2011. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 19, San Diego, États-Unis, 15 January 2011/19 January 2011.
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High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane. Garsmeur Olivier, Charron Carine, Bocs Stéphanie, Jouffe Vincent, Samain Sylvie, Couloux Arnaud, Droc Gaëtan, Zini Cyrille, Glaszmann Jean-Christophe, Van Sluys Marie-Anne, D'Hont Angélique. 2011. New Phytologist, 189 (2) : pp. 629-642.
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Sequencing the coffee genome (W152). Wincker Patrick, Albert Victor A., Andrade Alan A., Argout Xavier, Bertrand Benoît, De Kochko Alexandre, Giuliano Giovanni, Graziosi Giorgio, Henry Robert, Jayarama Jayarama, Lashermes Philippe, Ming Ray, Nagai Chifumi, Rounsley Steve, Sankoff David. 2011. In : Abstracts of Plant and Animal Genomes XIXth Conference, San Diego, CA (USA), January 15-19, 2011. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 19, San Diego, États-Unis, 15 January 2011/19 January 2011.
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An efficient and rapid protocol for plant nuclear DNA preparation suitable for next generation sequencing methods. Carrier Gregory, Santoni Sylvain, Rodier-Goud Marguerite, Canaguier Aurélie, De Kochko Alexandre, Dubreuil-Tranchant Christine, This Patrice, Boursiquot Jean-Michel, Le Cunff Loïc. 2011. American Journal of Botany, 98 (1), e13-e15
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The sugarcane genome challenge: Strategies for sequencing a highly complex genome. Mendes Souza Glaucia, Berges Hélène, Bocs Stéphanie, Casu Rosanne, D'Hont Angélique, Ferreira João Eduardo, Henry Robert, Ming Ray, Potier Bernard, Van Sluys Marie-Anne, Vincentz Michel, Paterson Andrew H.. 2011. Tropical Plant Biology, 3 (3-4) : pp. 145-156.
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2010

Chado Controller a database monitor for confidentiality, quality and tracking of genomic annotations. Guignon Valentin, Droc Gaëtan, Poiron Claire, Lengellé Juliette, Garsmeur Olivier, Baurens Franc-Christophe, Bocs Stéphanie. 2010. In : Journées ouvertes biologie informatique mathématique (JOBIM), Montpellier, France, 07-09 septembre 2010. s.l. : s.n., Résumé, 1 p. Journées ouvertes biologie informatique mathématique, Montpellier, France, 7 September 2010/9 September 2010.
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Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus). Soler Lucile, Conte Matthew A., Katagiri Takayuki, Howe Aimée E., Lee Bo-Young, Amemiya Chris, Stuart Andrew, Dossat Carole, Poulain Julie, Johnson Jeremy, Di Palma Frederica, Lindblad-Toh Kerstin, Baroiller Jean-François, D'Cotta Helena, Ozouf-Costaz Catherine, Kocher Thomas D.. 2010. BMC Genomics, 11 (636), 8 p.
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Development of SSR markers from Citrus clementina (Rutaceae) BAC end sequences and interspecific transferability in Citrus. Ollitrault Frédérique, Terol Javier F., Pina José Antonio, Navarro Luis, Talon Manuel, Ollitrault Patrick. 2010. American Journal of Botany, 97 (11), e124-e129e
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Estudo da expressão e Análise de poliformismo nucléicosde genes candidatos para a tolerância à seca em cafeeiro. Pereira Freire Luciana. 2010. Lavras : UFLA, 117 p. Mémoire de master : Biotecnologia Vegetal : Universidade Federal de Lavras
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Mechanisms of haplotype divergence at the RGA08 nucleotide-binding leucine-rich repeat gene locus in wild banana (Musa balbisiana). Baurens Franc-Christophe, Bocs Stéphanie, Rouard Mathieu, Matsumoto Takashi, Miller Roberto Neil Gerard, Rodier-Goud Marguerite, Mbéguié-A-Mbéguié Didier, Yahiaoui Nabila. 2010. BMC Plant Biology, 10 (149), 16 p.
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A combined analysis of morphological traits, chloroplast and nuclear DNA sequences within Santiria trimear (Burseraceae) suggests several species following the Biological Species Concept. Koffi K. Guillaume, Heuretz Myriam, Doumenge Charles, Onana Jean-Michel, Gavory Fréderick, Hardy Olivier J.. 2010. Plant Ecology and Evolution, 143 (2) : pp. 160-169.
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2009

Innovative approach for transcriptomic analysis of obligate intracellular pathogen: Selective capture of transcribed sequences of Ehrlichia ruminantium. Emboule Loïc, Daigle France, Meyer Damien, Mari Bernard, Pinarello Valérie, Sheikboudou Christian, Magnone Virginie, Frutos Roger, Viari Alain, Barbry Pascal, Martinez Dominique, Lefrançois Thierry, Vachiery Nathalie. 2009. BMC Molecular Biology, 10:111, 12 p.
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Molecular phylogeny of Pisolithus species from Moroccan forest woodlands. Bakkali-Yakhlef Salahedine, Mousain Daniel, Duponnois Robin, Ducousso Marc, Belkouri Abdellatif, Kerdouh Benaissa, Perrineau Marie-Mathilde, Abourouh Mohamed. 2009. Symbiosis, 49 (3) : pp. 157-162.
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2008

Characterization of leafy cotyledon1-like during embryogenesis in Theobroma cacao L. Alemanno Laurence, Devic M., Niemenak Nicolas, Sanier Christine, Guilleminot J., Rio Maryannick, Verdeil Jean-Luc, Montoro Pascal. 2008. Planta, 227 (4) : pp. 853-866.

Differential strain-specific diagnosis of the heartwater agent: Ehrlichia ruminantium. Vachiery Nathalie, Maganga Gaël Darren, Lefrançois Thierry, Kandassamy Yane, Stachurski Frédéric, Adakal Hassane, Ferraz Conchita, Morgat Anne, Bensaïd Albert, Coissac Eric, Boyer Frédéric, Demaille Jacques, Viari Alain, Martinez Dominique, Frutos Roger. 2008. Infection, Genetics and Evolution, 8 (4) : pp. 459-466. International Congress on Molecular Epidemiology and Evolutionary Genetics of Infectious Diseases. 8, Bangkok, Thaïlande, 30 October 2006/2 November 2006.
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High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. Holt Kathryn E., Parkhill Julian, Mazzoni Camila J., Roumagnac Philippe, Weill François-Xavier, Goodhead Ian, Rance Richard, Baker Stephen, Maskell Duncan J., Wain John, Dolecek Christiane, Achtman Mark, Dougan Gordon. 2008. Nature Genetics, 40 (8) : pp. 987-993.
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Insights into the Musa genome : Syntenic relationships to rice and between Musa species. Lescot Magali, Piffanelli Pietro, Ciampi Ana, Ruiz Manuel, Blanc Guillaume, Leebens-Mack Jim, Da Silva Felipe, Santos Candice M.R., D'Hont Angélique, Garsmeur Olivier, Vilarinhos Alberto Duarte, Kanamori Hiroyuki, Matsumoto Takashi, Ronning Catherine, Cheung Foo, Haas Brian, Althoff Ryan, Arbogast Tammy, Hine Erin, Pappas Junior Georgios, Sasaki Takuji, Souza Manoel, Miller Roberto Neil Gerard, Glaszmann Jean-Christophe, Town Christopher. 2008. BMC Genomics, 9 (58), 20 p.
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Utilisation d'une séquence complète du génome d'une souche de Mycoplasma mycoides Subsp. Mycoides LC pour la mise au point de tests de diagnostic, application à l'expression de gènes héérologues. Salah Woubit. 2008. Toulouse : INPT, 192 p. Thèse de doctorat : Science vétérinaire : Institut national polytechnique de Toulouse

2007

Begomovirus melting pot in the south-west Indian Ocean islands: Molecular diversity and evolution through recombination. Lefeuvre Pierre, Martin Darren Patrick, Hoareau Murielle, Naze Florence, Delatte Hélène, Thierry Magalie, Varsani Arvind, Becker Nathalie, Reynaud Bernard, Lett Jean-Michel. 2007. Journal of General Virology, 88 (12) : pp. 3458-3468.
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Caractérisation des translocations dans le génome de la banane par cytogénétique moléculaire. Bakry Frédéric, D'Hont Angélique. 2007. In : La plate-forme de recherches avancées Agropolis : génomique et biotechnologie. Savidan Yves (ed.). Agropolis. Montpellier : Agropolis, pp. 23-27. (Les dossiers d'Agropolis International, 5)

Diversité génétique des bégomovirus responsables de la mosaïque du manioc dans les archipels des Comores et des Seychelles : évidence d'une nouvelle espèce, fruit d'une recombinaison interspécifique ancestrale. Villar Emilie, Lefeuvre Pierre, Delatte Hélène, Martin Darren Patrick, Reynaud Bernard, Lett Jean-Michel. 2007. In : 11 èmes Rencontres de virologie végétale, Aussois, 28 janvier au 1er février 2007. s.l. : s.n., Résumé, 1 p. Rencontres de virologie végétale. 11, Aussois, France, 28 January 2007/1 February 2007.
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Identification and sequencing of ESTs from the halophyte grass Aeluropus littoralis. Zouari Nabil, Ben Saad Rania, Legavre Thierry, Azaza Jalel, Sabau Xavier, Jaoua Mohamed, Masmoudi Khaled, Hassairi Afif. 2007. Gene, 404 : pp. 61-69.
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Identification of new potential regulators of the Medicago truncatula-Sinorhizobium meliloti symbiosis using a large-scale suppression subtractive hybridization approach. Godiard Laurence, Niebel Andreas, Micheli Fabienne, Gouzy Jérôme, Ott Thomas, Gamas Pascal. 2007. Molecular Plant-Microbe Interactions, 20 (3) : pp. 321-332.
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Molecular analysis of Banana streak virus (BSV) in the nuclear genome of Musa balbisiana. Noa-Carrazana Juan Carlos, Lescot Magali, Piffanelli Pietro, Safar Jan, Dolezel Jaroslav, Matsumoto Takashi, Silva-Rosales Laura, Lheureux Fabrice, Teycheney Pierre-Yves, Sasaki Takuji, Iskra Caruana Marie-Line. 2007. In : First ISHS : ProMusa ProMusa Symposium: Recent advances in banana crop protection for sustainable production and improved livelihoods, White River, South Africa, 10-14 september 2007. ISHS. Montpellier : Cirad, Résumé, 1 p. International Symposium on recent advances in banana crop protection for sustainable production and improved livelihoods. 1, White River, Afrique du Sud, 10 September 2007/14 September 2007.
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Molecular detection and characterization of phytoplasmas associated with lethal yellowing disease of coconut palms in Jamaica. Myrie Wayne, Harrison Nigel, Dollet Michel, Been Basil. 2007. Bulletin of Insectology, 60 (2) : pp. 159-160. Annual Meeting of the International Phytoplasmologist Working Group. 1, Bologne, Italie, 12 November 2007/15 November 2007.
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Toward sequencing cotton (Gossypium) genomes. Chen Z. Jeffrey, Scheffler Brian, Dennis Elizabeth, Triplett Barbara .A., Zhang Tianzhen, Guo Wangzhen, Chen Xiaoqian, Stelly David M., Rabinowicz Pablo D., Town Christopher, Arioli Tony, Brubaker Curt, Cantrell Roy G., Lacape Jean-Marc, Ulloa Mauricio, Chee Peng, Gingle Alan R., Haigler Candace H., Percy Richard, Saha Sukumar, Wilkins Thea, Wright Robert J., Van Deynze Allen, Zhu Yuxian, Yu Shuxun, Abdurakhmonov Ibrokhim, Katageri Ishwarappa, Kumar P. Ananda, Mehboob-ur-Rahman, Zafar Yusuf, Yu John Z., Kohel Russell J., Wendel Jonathan F., Paterson Andrew H.. 2007. Plant Physiology, 145 : pp. 1303-1310.
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2006

Abscence de gènes nod chez certaines souches de Bradyrhizobium photosynthétiques révélée par l'analyse de la séquence de leurs génomes. Moulin L., Avarre Jean-Christophe, Jaubert Marianne, Barbe Valérie, Béna Gilles, Cartiaux F., Delajudie P., Dreyfus Bernard, Elmerich D., Fardoux Joël, Hannibal L., Kojadinovic Mila, Lajus Aurélie, Mangenot S.G., Medigue Claudine, Pignol David, Prin Yves, Rouy Zoe, Stacey Gary, Sadowsky Michael, Vallenet D., Vermeglio André, Vuillet Laurie, Giraud E.. 2006. In : 7èmes Rencontres plantes-bactéries, 20-23 mars 2006, Aussois, France. Résumés. SFP. Angers : INRA, Résumé, p. 39. Rencontres plantes-bactéries. 7, Aussois, France, 20 March 2006/24 March 2006.

Analysing grouping of nucleotides in DNA sequences using lumped processes constructed from markov chains. Guédon Yann, D'Aubenton-Carafa Yves, Thermes Claude. 2006. Journal of Mathematical Biology, 52 (3) : pp. 343-372.
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Etude de la taxonomie des Xanthomonas associées aux anacardiacées. Ah-You Nathalie, Gagnevin Lionel, Pruvost Olivier. 2006. In : 7èmes Rencontres plantes-bactéries, 20-23 mars 2006, Aussois, France. Résumés. SFP. Angers : INRA, Résumé, p. 30. Rencontres plantes-bactéries. 7, Aussois, France, 20 March 2006/24 March 2006.

Identification of potyviruses infecting vanilla by direct sequensing of a short RT-PCR amplicon. Grisoni Michel, Moles Marion, Farreyrol Karin, Rassaby Laurence, Davis R., Pearson Michael N.. 2006. Plant Pathology, 55 (4) : pp. 523-529.
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MADS Box Genes in Oil Palm (Elaeis guineensis) : Patterns in the Evolution of the SQUAMOSA, DEFICIENS, GLOBOSA, AGAMOUS, and SEPALLATA Subfamilies. Adam Hélène, Jouannic Stefan, Morcillo Fabienne, Richaud Frédérique, Duval Yves, Tregear James. 2006. Journal of Molecular Evolution, 62 (1) : pp. 15-31.
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Polymorphism and position analysis of dinucleotide and trinucleotide microsatellite sequences detected in citrus clementine cv. EST sequences. Luro François, Argout Xavier, Costantino Gilles, Froelicher Yann, Terol Javier F., Agusti Javier, Alos Enriqueta, Andres Fernando, Brumos Javier, Carillo J.A., Cercos Manuel, Colmenero Jose M., Conejero Vicente, Conesa Ana, Iglesias Domingo, Legaz Francisco, Navarro Luis, Soler Guillermo, Tadeo Francisco, Talon Manuel, Courtois Brigitte, Dossat Carole, Wincker Patrick, Ollitrault Patrick, Morillon Raphaël. 2006. In : Abstracts of Plant and Animal Genomes XIVth Conference, San Diego, CA (USA), January 14-18, 2006. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 14, San Diego, États-Unis, 14 January 2006/18 January 2006.

Test de détection de Xanthomonas axonopodis pv dieffenbachiae. Robène-Soustrade Isabelle, Laurent Philippe, Gagnevin Lionel. 2006. Paris : INPI, 24 p. N° de dépôt : 0215279, N° de brevet : FR2848222 B1, N° de dépôt : 1024929, N° de brevet : NLC1024929
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2005

Analysis of expressed sequence tags from oil palm (Elaeis guineensis). Jouannic Stefan, Argout Xavier, Lechauve Frédéric, Fizames Cécile, Borgel Alain, Morcillo Fabienne, Aberlenc-Bertossi Frédérique, Duval Yves, Tregear James. 2005. FEBS Letters, 579 (12) : pp. 2709-2714.
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Biosynthèse de l'albicidine, une molécule antibiotique et une pathotoxine de Xanthomonas albilineans. Vivien Eric. 2005. Montpellier : UM2, 121 p. Thèse de doctorat : Microbiologie moléculaire : Université Montpellier 2
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Epidemiology of peste des petits ruminants virus in Ethiopia and molecular studies on virulence. Gopilo Abraham. 2005. Toulouse : INPT, 173 p. Thèse de doctorat : Science vétérinaires : Institut national polytechnique de Toulouse
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Phylogenetic and functional analysis of the WRKY gene family in rice. Berri Stefano, Bily A., Faivre-Rampant Odile, Guiderdoni Emmanuel, Piffanelli Pietro. 2005. In : Société française de phytopathologie, VIème congrés, 23-24-25 février 2005, Toulouse : programme et résumés des communications. SFP, INRA, CNRS, ENSAT-INP, UPS, IFR FR40. Paris : Société française de phytopathologie, Résumé, 1 p. Congrès de la Société française de phytopathologie. 6, Toulouse, France, 23 February 2005/25 February 2005.

2003

Promoter sequences from Hevea brasiliensis hevein genes. Pappusamy Arokiaraj, Pujade-Renaud Valérie, Jones Heddwyn. 2003. Kuala Lumpur : Intellectual Property Corporation of Malaysia, 36 p. N° de dépôt : PI20031807, N° de dépôt international : PCT/IB2004/001904, N° de brevet international : WO2004/101614 A1
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2002

What comes next after the genome sequencing. Demaille Jacques. 2002. In : Second international symposium on Candidate Genes for Animal Health (C.G.A.H), Montpellier, France, August 16-18th 2002 : abstracts. CIRAD, INRA. Montpellier : CIRAD, Résumé, 1 p. International Symposium on Candidate Genes for Animal Health. 2, Montpellier, France, 16 August 2002/18 August 2002.

2000

Séquençage génomique et comparatif du riz. Lagoda Pierre. 2000. In : IXèmes Entretiens d'Agropolis : apport des outils biotechnologiques à l'amélioration variétale des plantes méditerranéennes et tropicales. Lundi 22 mai 2000, Montpellier. Agropolis. Montpellier : Agropolis, Résumé, p. 20. Entretiens d'Agropolis : Apport des outils biotechnologiques à l'amélioration variétale des plantes méditerranéennes et tropicales. 9, Montpellier, France, 22 May 2000.

1999

Aspects biologiques et moléculaires du virus de la peste des petits ruminants. Haffar Athman, Minet Cécile, Barbron Monique, Grillet Colette, Libeau Geneviève, Diallo Adama. 1999. Annales de Médecine Vétérinaire, 143 : pp. 393-402.

1997

Identification and analysis of genes from Streptomyces pristinaespiralis encoding enzymes involved in the biosynthesis of the 4-dimethylamino-L-phenylalanine precursor of pristinamycin I. Blanc V., Gil Patricia, Bamas-Jacques Nathalie, Lorenzon Sophie, Zagorec Monique, Schleuniger Josiane, Bisch Didier, Blanche Francis, Debussche Laurent, Crouzet Joël, Thibaut Denis. 1997. Molecular Microbiology, 23 (2) : pp. 191-202.

This list was generated on Mon Nov 23 07:47:08 2020 CET.