Parcourir par Affiliation d'auteur

Seasonal dynamics of marine protist communities in tidally mixed coastal waters. Caracciolo Mariarita, Rigaut-Jalabert Fabienne, Romac Sarah, Mahé Frédéric, Forsans Samuel, Gac Jean-Philippe, Arsenieff Laure, Manno Maxime, Chaffron Samuel, Cariou Thierry, Hoebeke Mark, Bozec Yann, Goberville Eric, Le Gall Florence, Guilloux Loïc, Baudoux Anne-Claire, de Vargas Colomban, Not Fabrice, Thiébaut Eric, Henry Nicolas, Simon Nathalie. 2022. Molecular Ecology, 31 (14) : 3761-3783.

Badnaviruses and banana genomes: A long association sheds light on Musa phylogeny and origin. Chabannes Matthieu, Gabriel Marc, Aksa Abderrahmane, Galzi Serge, Dufayard Jean François, Iskra Caruana Marie-Line, Muller Emmanuelle. 2021. Molecular Plant Pathology, 22 (2) : 216-230.

Comparison of the virome of quarantined sugarcane varieties and the virome of grasses growing near the quarantine station. Daugrois Jean-Heinrich, Filloux Denis, Julian Charlotte, Claude Lisa, Ferdinand Romain, Fernandez Emmanuel, Fontes Hugo, Rott Philippe, Roumagnac Philippe. 2021. Viruses, 13 (5):922, 17 p.

Convergent adaptation to quantitative host resistance in a major plant pathogen. Carlier Jean, Bonnot François, Roussel Véronique, Ravel Sébastien, Martinez Reina Teresa, Perez-Vicente Luis, Abadie Catherine, Wright Stephen. 2021. Mbio, 12 (1):e03129-20, 18 p.

Field management of Rotylenchulus reniformis on pineapple combining crop rotation, chemical-mediated induced resistance and endophytic bacterial inoculation. Soler Alain, Marie Alphonsine Paul-Alex, Quénéhervé Patrick, Prin Yves, Sanguin Hervé, Tisseyre Pierre, Daumur Romain, Pochat C., Dorey Elodie, González Rodríguez Rayza M, Portal N., Smith-Ravin J.. 2021. Crop Protection, 141:105446, 8 p.

First report of three pineapple mealybug wilt-associated viruses in Queen Victoria Pineapples in Reunion Island. Massé Delphine, Cassam Nathalie, Hostachy Bruno, Iskra Caruana Marie-Line, Darnaudery Marie, Lefeuvre Pierre, Lett Jean-Michel. 2021. Plant Disease, 105 (3) : 715.

Genetic variation in host-specific competitiveness of the symbiont Rhizobium leguminosarum symbiovar viciae. Boivin Stéphane, Mahé Frédéric, Debellé Frédéric, Pervent Marjorie, Tancelin Mathilde, Tauzin Marc, Wielbo Jerzy, Mazurier Sylvie, Young Peter, Lepetit Marc. 2021. Frontiers in Plant Science, 12:719987, 17 p.

High and specific diversity of protists in the deep-sea basins dominated by diplonemids, kinetoplastids, ciliates and foraminiferans. Schoenle Alexandra, Hohlfeld Manon, Hermanns Karoline, Mahé Frédéric, de Vargas Colomban, Nitsche Frank, Arndt Hartmut. 2021. Communications Biology, 4:501, 10 p.

Identifying potential hosts of short-branch microsporidia. Doliwa Annemie, Dunthorn Micah, Rassoshanska Erika, Mahé Frédéric, Bass David, Duarte Ritter Camila. 2021. Microbial Ecology, 82 : 549-553.

Mycorrhizal inoculation increases fruit production without disturbance of native arbuscular mycorrhizal community in jujube tree orchards (Senegal). Thioye Babacar, Sanguin Hervé, Kane Aboubacry, Ndiaye Cheikh, Fall Dioumacor, Sanogo Diaminatou, Duponnois Robin, Miana de Faria Sergio, Sylla Samba Ndao, Bâ Amadou Mustapha. 2021. Symbiosis, 83 (3) : 361-372.

Periodontitis associates with species-specific gene expression of the oral microbiota. Belstrom Daniel, Constancias Florentin, Drautz-Moses Daniela I., Schuster Stephan C., Veleba Mark, Mahé Frédéric, Givskov Michael. 2021. npj Biofilms and Microbiomes, 7:76, 10 p.

Spatial and temporal analysis of Phytophthora megakarya epidemic in newly established cacao plantations. Ndoungue Djeumekop Minette Mireille, Ngo Bieng Marie-Ange, Ribeyre Fabienne, Bonnot François, Cilas Christian, Neema Claire, Ten Hoopen Gerben Martijn. 2021. Plant Disease, 105 (5) : 1448-1460.

Spatial distribution of the different strains of the distinct coconut lethal yellowing-type phytoplasma species associated with the syndrome in Tanzania. Mpunami Anatolia, Pilet Fabian, Fabre Sandrine, Kullaya Alois, Dickinson Mathhew, Dollet Michel. 2021. Tropical Plant Pathology, 46 (2) : 207-217.

Structure of African populations of Pyricularia oryzae from rice. Odjo Théophile, Diagne Diariatou, Adreit Henri, Milazzo Joëlle, Raveloson Harinjaka, Andriantsimialona Dodelys, Kassankogno Abalo Itolou, Ravel Sébastien, Dieudonné Gumedzoé Yawovi Mawuéna, Ouedraogo Ibrahima, Koita Ousmane, Silué Drissa, Tharreau Didier. 2021. Phytopathology, 111 (8) : 1428-1437.

Temporal recovery of soil biological activity and diversity after 915-MHz microwave treatments. Maynaud Géraldine, Baudoin Ezékiel, Mahé Frédéric, Villenave Cécile, Cleyet-Marel Jean-Claude, Brunel Béatrice. 2021. Biology and Fertility of Soils, 57 (5) : 603-616.

Tracing the origin and evolutionary history of Pyricularia oryzae infecting maize and barnyard grass. Pordel Adel, Ravel Sébastien, Charriat FLorian, Gladieux Pierre, Cros-Arteil Sandrine, Milazzo Joëlle, Adreit Henri, Javan-Nikkhah Mohammad, Mirzadi Gohari Amir, Moumeni Ali, Tharreau Didier. 2021. Phytopathology, 111 (1), n.spéc. : 128-136.

The Windblown: Possible explanations for dinophyte DNA in forest soils. Gottschling Marc, Czech Lucas, Mahé Frédéric, Adl Sina, Dunthorn Micah. 2021. Journal of Eukaryotic Microbiology, 68 (1):e12833, 6 p.

metaXplor: An interactive viral and microbial metagenomic data manager. Sempere Guilhem, Petel Adrien, Abbé Magsen, Lefeuvre Pierre, Roumagnac Philippe, Mahé Frédéric, Baurens Gaël, Filloux Denis. 2021. GigaScience, 10 (2):giab001 : 1-8.

A spatio-temporal stochastic model for an emerging plant disease spread in a heterogeneous landscape. Landry Clara, Abadie Catherine, Bonnot François, Vaillant Jean. 2021. International Journal of Computer Applications, 174 (16) : 1-7.

A world-wide analysis of reduced sensitivity to DMI fungicides in the banana pathogen Pseudocercospora fijiensis. Chong Pablo, Ngando Essoh Otto Josué, Arango Isaza Rafael E., Keizer Paul, Stergiopoulos Ioannis, Seidl Michael F., Guzman Mauricio, Sandoval Jorge A., Verweij Paul E., Scalliet Gabriel, Sierotzski Helge, De Lapeyre de Bellaire Luc, Crous Pedro W., Carlier Jean, Cros Sandrine, Meijer Harold J.G., Peralta Esther Lilia, Kema Gert H.J.. 2021. Pest Management Science, 77 (7) : 3273-3288.

Alfalfa leaf curl virus is transmitted by Aphis craccivora in a highly specific circulative manner. Ryckebusch Faustine, Sauvion Nicolas, Granier Martine, Roumagnac Philippe, Peterschmitt Michel. 2020. Virology, 546 : 98-108.

Complete genome sequence reveals evolutionary and comparative genomic features of Xanthomonas albilineans causing sugarcane leaf scald. Zhang Hui-Li, Ntambo Mbuya Sylvain, Rott Philippe, Chen Gongyou, Chen Li-Lan, Huang Mei-Ting, Gao San-Ji. 2020. Microorganisms, 8 (2):182, 16 p.

Controlled sampling of ribosomally active protistan diversity in sediment-surface layers identifies putative players in the marine carbon sink. Rodríguez-Martínez Raquel, Leonard Guy, Milner David S., Sudek Sebastian, Conway Mike, Moore Karen, Hudson Theresa, Mahé Frédéric, Keeling Patrick J., Santoro Alyson E., Worden Alexandra Z., Richards Thomas A.. 2020. ISME Journal, 14 (4) : 984-998.

Diverse genomoviruses representing twenty-nine species identified associated with plants. Fontenele Rafaela S, Roumagnac Philippe, Richet Cécile, Kraberger Simona, Stainton Daisy, Aleamotu‘a Maketalena, Filloux Denis, Bernardo Pauline, Harkins Gordon William, McCarthy James, Charles Lachlan S., Lamas Natalia S., Abreu Emanuel F. M., Abreu Rayane A., Batista Graciete B., Lacerda Ana L. M., Salywon Andrew M., Wojciechowski Martin, Majure Lucas C., Martin Darren Patrick, Ribeiro Simone G., Lefeuvre Pierre, Varsani Arvind. 2020. Archives of Virology, 165 (12) : 2891-2901.

Diversity and dynamics of relevant nanoplanktonic diatoms in the Western English Channel. Arsenieff Laure, Le Gall Florence, Rigaut-Jalabert Fabienne, Mahé Frédéric, Sarno Diana, Gouhier Léna, Baudoux Anne-Claire, Simon Nathalie. 2020. ISME Journal, 14 (8) : 1966-1981.

Editorial: Plant pathogen life-history traits and adaptation to environmental constraints. Le May christophe, Montarry Josselin, Morris Cindy E., Frenkel Omer, Ravigné Virginie. 2020. Frontiers in Plant Science, 10:1730, 4 p.

First report of Pyricularia oryzae causing blast on Sorghum halepense (Johnson grass) in Iran. Pordel Adel, Tharreau Didier, Ghorbani Golzar, Javan-Nikkhah Mohammad. 2020. Plant Disease, 104 (11) : p. 3061.

First report of Sugarcane streak mosaic virus in sugarcane (Saccharum spp.) in Côte d'Ivoire. Daugrois Jean-Heinrich, Roumagnac Philippe, Kouakou Y., Oura O.J.D.T., Pita J.S.. 2020. New Disease Reports, 41:22 : p. 22.

Fitness advantage of inter-species TYLCV recombinants induced by beneficial intra-genomic interactions rather than by specific mutations. Urbino Cica, Regragui Zohra Fatima, Granier Martine, Peterschmitt Michel. 2020. Virology, 542 : 20-27.

Genome wide association studies for japonica rice resistance to blast in field and controlled conditions. Volante Andrea, Tondelli Alessandro, Desiderio Francesca, Abbruscato Pamela, Menin Barbara, Biselli Chiara, Casella Laura, Singh Namrata, McCouch Susan, Tharreau Didier, Zampieri Elisa, Cattivelli Luigi, Valè Giampiero. 2020. Rice, 13:71, 17 p.

Haplaxius crudus (Hemiptera: Cixiidae) transmits the lethal yellowing phytoplasmas, 16SrIV, to Pritchardia pacifica Seem. and H.Wendl (Arecaceae) in Yucatan, Mexico. Dzido Jean-Luc, Sanchez R., Dollet Michel, Julia J., Narvaez Maria, Fabre Sandrine, Oropeza Carlos. 2020. Neotropical Entomology, 49 (6) : 795-805.

Heterogeneity of the rice microbial community of the Chinese centuries-old Honghe Hani rice terraces system. Alonso Pascal, Blondin Laurence, Gladieux Pierre, Mahé Frédéric, Sanguin Hervé, Ferdinand Romain, Filloux Denis, Desmarais Eric, Cerqueira Frédérique, Jin Baihui, Huang Huichuan, He Xiahong, Morel Jean-Benoit, Martin Darren Patrick, Roumagnac Philippe, Vernière Christian. 2020. Environmental Microbiology, 22 (8) : 3429-3445.

High-throughput sequencing for deciphering the virome of alfalfa (Medicago sativa L.). Bejerman Nicolás, Roumagnac Philippe, Nemchinov Lev G.. 2020. Frontiers in Microbiology, 11:553109, 17 p.

ICTV Virus Taxonomy Profile: Caulimoviridae. Teycheney Pierre-Yves, Geering Andrew D., Dasgupta Indranil, Hull Roger, Kreuze Jan, Lockhart Benham E.L., Muller Emmanuelle, Olszewski Neil E., Pappu Hanu R., Pooggin Mikhail, Richert-Pöggeler Katja R., Schoelz James E., Seal Susan, Stavolone Livia, Umber Marie, ICTV Report Consortium. 2020. Journal of General Virology, 101 (10) : 1025-1026.

Identification and fine mapping of Pi69(t), a new gene conferring broad-spectrum resistance against Magnaporthe oryzae from Oryza glaberrima steud. Dong Liying, Liu Shuguang, Sandar Kyaing May, Xu Peng, Tharreau Didier, Deng Wei, Li Xundong, Bi Yunqing, Zeng Li, Li Jing, Zhou Jiawu, Tao Dayun, Yang Qinzhong. 2020. Frontiers in Plant Science, 11:1190, 8 p.

Identification of differentially expressed proteins in sugarcane in response to infection by Xanthomonas albilineans using iTRAQ quantitative proteomics. Meng Jian-Yu, Ntambo Mbuya Sylvain, Rott Philippe, Fu Hua-Ying, Huang Mei-Ting, Zhang Hui-Li, Gao San-Ji. 2020. Microorganisms, 8 (1):76, 21 p.

Illuminating an ecological blackbox: Using high throughput sequencing to characterize the plant virome across scales. Maclot François, Candresse Thierry, Filloux Denis, Malmstrom Carolyn M., Roumagnac Philippe, van der Vlugt René, Massart Sébastien. 2020. Frontiers in Microbiology, 11:578064, 16 p.

Improvements in virus detection at CIRAD's sugarcane quarantine using both viral metagenomics and PCR-Based approaches. Fernandez Emmanuel, Ferdinand Romain, Filloux Denis, Guinet Isabelle, Julian Charlotte, Rott Philippe, Roumagnac Philippe, Daugrois Jean-Heinrich. 2020. Sugar Tech, 22 : 498-503.

Investigating the use of aquatic weeds as biopesticides towards promoting sustainable agriculture. Fu Yuting, Bhadha Jehangir H., Rott Philippe, Beuzelin Julien M., Kanissery Ramdas. 2020. PloS One, 15 (8):e0237258, 23 p.

Lack of transmission of Sugarcane yellow leaf virus in Florida from Columbus grass and sugarcane to sugarcane with aphids or mites. Boukari Wardatou, Wei Chunyan, Tang Lihua, Hincapie Martha, Naranjo Moramay, Nuessly Gregg, Beuzelin Julien M., Sood Sushma, Rott Philippe. 2020. PloS One, 15 (3):e0230066, 19 p.

Large-scale survey reveals pervasiveness and potential function of endogenous geminiviral sequences in plants. Sharma Vikas, Lefeuvre Pierre, Roumagnac Philippe, Filloux Denis, Teycheney Pierre-Yves, Martin Darren Patrick, Maumus Florian. 2020. Virus Evolution, 6 (2):veaa071, 13 p.

Molecular detection of sugarcane striate virus and sugarcane white streak virus and their prevalence in the Miami World Collection of sugarcane and related grasses. Boukari Wardatou, Filloux Denis, Daugrois Jean-Heinrich, Fernandez Emmanuel, Mollov Dimitre S., Kaye Claudia, Hincapie Martha, Sanchez Alexander, Wang Jianping, Roumagnac Philippe, Rott Philippe. 2020. Plant Pathology, 69 (6) : 1060-1069.

Molecular viral diagnosis and sanitation of yam genetic resources: Implications for safe yam germplasm exchange. Umber Marie, Filloux Denis, Gélabale Suzia, Gomez Rose-Marie, Marais Armelle, Gallet Séverine, Gamiette Franciane, Pavis Claudie, Teycheney Pierre-Yves. 2020. Viruses, 12 (10):1101, 18 p.

Multi-scale spatial genetic structure of the vector-borne pathogen 'Candidatus Phytoplasma prunorum' in orchards and in wild habitats. Marie-Jeanne Véronique, Bonnot François, Thébaud Gaël, Peccoud Jean, Labonne Gérard, Sauvion Nicolas. 2020. Scientific Reports, 10 (1):5002, 13 p.

A PCR, qPCR, and LAMP toolkit for the detection of the wheat blast pathogen in seeds. Thierry Maud, Chatet Axel, Fournier Elisabeth, Tharreau Didier, Ioos Renaud. 2020. Plants, 9:227, 14 p.

Pattern of local adaptation to quantitative host resistance in a major pathogen of a perennial crop. Dumartinet Thomas, Abadie Catherine, Bonnot François, Carreel Françoise, Roussel Véronique, Habas Rémy, Martinez Reina Teresa, Perez-Vicente Luis, Carlier Jean. 2020. Evolutionary Applications, 13 (4) : 824-836.

RDP5: A computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets. Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe, Botha Gerrit, Maslamoney Suresh, Schwab Tiana, Kelz Zena, Kumar Venkatesh, Murrell Ben. 2020. Virus Evolution, 7 (1):veaa087, 3 p.

Sorghum mastrevirus-associated alphasatellites: New geminialphasatellites associated with an African streak mastrevirus infecting wild Poaceae plants on Reunion Island. Claverie Sohini, Varsani Arvind, Hoareau Murielle, Filloux Denis, Roumagnac Philippe, Martin Darren Patrick, Lefeuvre Pierre, Lett Jean-Michel. 2020. Archives of Virology, 165 (8) : 1925-1928.

Symptom evolution following the emergence of maize streak virus. Monjane Adérito Luis, Dellicour Simon, Hartnady Penelope, Oyeniran Kehinde A., Owor Betty E., Bezeidenhout Marion, Linderme Daphné, Syed Rizwan Ali, Donaldson Lara, Murray Shane, Rybicki Edward P., Kvarnheden Anders, Yazdkhasti Elhman, Lefeuvre Pierre, Froissart Rémy, Roumagnac Philippe, Shepherd Dionne Natalie, Harkins Gordon William, Suchard Marc, Lemey Philippe, Varsani Arvind, Martin Darren Patrick. 2020. eLife, 9:e51984, 19 p.

Transcriptional regulation of sorghum stem composition: Key players identified through co-expression gene network and comparative genomics analyses. Hennet Lauriane, Berger Angélique, Trabanco Noemi, Ricciuti Emeline, Dufayard Jean François, Bocs Stéphanie, Bastianelli Denis, Bonnal Laurent, Roques Sandrine, Rossini Laura, Luquet Delphine, Terrier Nancy, Pot David. 2020. Frontiers in Plant Science, 11:224, 29 p.

Weather-based predictive modeling of orange rust of sugarcane in Florida. Chaulagain Bhim, Small Ian M., Shine James M., Fraisse Clyde W., Raid Richard Neil, Rott Philippe. 2020. Phytopathology, 110 (3) : 626-632.

Yam asymptomatic virus 1, a novel virus infecting yams (Dioscorea spp.) with significant prevalence in a germplasm collection. Marais Armelle, Umber Marie, Filloux Denis, Gomez Rose-Marie, Faure Chantal, Pavis Claudie, Julian Charlotte, Roumagnac Philippe, Acina Manbole Isabelle Nina, Bonheur Lydiane, Theil Sébastien, Contreras Sandy, Candresse Thierry, Teycheney Pierre-Yves. 2020. Archives of Virology, 165 : 2653-2657.

The belowground bacterial and fungal communities differed in their significance as microbial indicator of Moroccan carob habitats. Khassali Hamza, Baumel Alex, Mahé Frédéric, Tournier Estelle, Tisseyre Pierre, Prin Yves, Ouahmane Lahcen, Sanguin Hervé. 2020. Ecological Indicators, 114:106341, 9 p.

A genomic approach to develop a new qPCR test enabling detection of the Pyricularia oryzae lineage causing wheat blast. Thierry Maud, Gladieux Pierre, Fournier Elisabeth, Tharreau Didier, Ioos Renaud. 2020. Plant Disease, 104 (1) : 60-70.

A novel divergent geminivirus identified in asymptomatic new world cactaceae plants. Fontenele Rafaela S, Salywon Andrew M., Majure Lucas C., Cobb Ilaria N., Bhaskara Amulya, Avalos-Calleros Jesús, Argüello-Astorga Gerardo, Schmidlin Kara, Khalifeh Anthony, Smith Kendal, Schreck Joshua, Lund Michael, Köhler Matias, Wojciechowski Martin, Hodgson Wendy C., Puente-Martinez Raul, Van Doorslaer Koenraad, Kumari Safaa G., Vernière Christian, Filloux Denis, Roumagnac Philippe, Lefeuvre Pierre, Ribeiro Simone G., Kraberger Simona, Martin Darren Patrick, Varsani Arvind. 2020. Viruses, 12 (4):398, 26 p.

A strong east–west Mediterranean divergence supports a new phylogeographic history of the carob tree (Ceratonia siliqua, Leguminosae) and multiple domestications from native populations. Viruel Juan, Le Galliot Nicolas, Pironon Samuel, Nieto-Feliner Gonzalo, Suc Jean-Pierre, Lakhal-Mirleau Fatima, Juin Marianick, Selva Marjorie, Bou Dagher Kharrat Magda, Ouahmane Lahcen, La Malfa Stefano, Diadema Katia, Sanguin Hervé, Médail Frédéric, Baumel Alex. 2020. Journal of Biogeography, 47 (2) : 460-471.

A young age of subspecific divergence in the desert locust inferred by ABC Random Forest. Chapuis Marie-Pierre, Raynal Louis, Plantamp Christophe, Meynard Christine N., Blondin Laurence, Marin Jean-Michel, Estoup Arnaud. 2020. Molecular Ecology, 29 (23) : 4542-4558.

Black Sigatoka in bananas: Ecoclimatic suitability and disease pressure assessments. Yonow Tania, Ramirez-Villegas Julian, Abadie Catherine, Darnell Ross E., Ota Noboru, Kriticos Darren J.. 2019. PloS One, 14 (8):e0220601, 25 p.

CRISPR elements provide a new framework for the genealogy of the citrus canker pathogen Xanthomonas citri pv. citri. Jeong Kwanho, Muñoz-Bodnar Alejandra, Arias Rojas Nathalia, Poulin Lucie, Rodríguez-R Luis Miguel, Gagnevin Lionel, Vernière Christian, Pruvost Olivier, Koebnik Ralf. 2019. BMC Genomics, 20:917, 19 p.

Comparative transcriptome profiling of resistant and susceptible sugarcane cultivars in response to infection by Xanthomonas albilineans. Ntambo Mbuya Sylvain, Meng Jian-Yu, Rott Philippe, Henry Robert, Zhang Hui-Li, Gao San-Ji. 2019. International Journal of Molecular Sciences, 20 (24):6138, 20 p.

Complete genome sequence of Bradyrhizobium sp. strain ORS3257, an efficient nitrogen-fixing bacterium isolated from cowpea in Senegal. Le Quéré Antoine, Gully Djamel, Teulet Albin, Navarro Elisabeth, Gargani Daniel, Fardoux Joël, Cruveiller Stéphane, Neyra Marc, Giraud Eric, Krasova-Wade Tatiana. 2019. Microbiology Resource Announcements, 8 (3):e01449, 2 p.

Deciphering how plant pathogenic bacteria disperse and meet: Molecular epidemiology of Xanthomonas citri pv. citri at microgeographic scales in a tropical area of Asiatic citrus canker endemicity. Pruvost Olivier, Boyer Karine, Ravigné Virginie, Richard Damien, Vernière Christian. 2019. Evolutionary Applications, 12 (8) : 1523-1538.

Difference in blast development in upland rice grown on an Andosol vs a Ferralsol. Sester Mathilde, Raveloson Harinjaka, Tharreau Didier, Becquer Thierry. 2019. Crop Protection, 115 : 40-46.

Diverse and variable virus communities in wild plant populations revealed by metagenomic tools. Susi Hanna, Filloux Denis, Frilander Mikko J., Roumagnac Philippe, Laine Anna-Liisa. 2019. PeerJ, 7:e6140, 24 p.

Emergence of southern rice black-streaked dwarf virus in the centuries-old Chinese Yuanyang agrosystem of rice landraces. Alonso Pascal, Gladieux Pierre, Moubset Oumaima, Shih Pei-Jung, Mournet Pierre, Frouin Julien, Blondin Laurence, Ferdinand Romain, Fernandez Emmanuel, Julian Charlotte, Filloux Denis, Adreit Henri, Fournier Elisabeth, Ducasse Aurélie, Grosbois Vladimir, Morel Jean-Benoit, Huang Huichuan, Jin Baihui, He Xiahong, Martin Darren Patrick, Vernière Christian, Roumagnac Philippe. 2019. Viruses, 11 (11):985, 13 p.

Evolution and ecology of plant viruses. Lefeuvre Pierre, Martin Darren Patrick, Elena Santiago F., Shepherd Dionne Natalie, Roumagnac Philippe, Varsani Arvind. 2019. Nature Reviews. Microbiology, 13 p.

Exploring the diversity of Poaceae infecting mastreviruses on Reunion Island using a viral metagenomicsbased approach. Claverie Sohini, Ouattara Alassane, Hoareau Murielle, Filloux Denis, Varsani Arvind, Roumagnac Philippe, Martin Darren Patrick, Lett Jean-Michel, Lefeuvre Pierre. 2019. Scientific Reports, 9:12716, 11 p.

First report of TYLCV-IS141, a tomato yellow leaf curl virus recombinant infecting tomato plants carrying the Ty-1 resistance gene in Sardinia (Italy). Granier Martine, Tomassoli L., Manglli A., Nannini M., Peterschmitt Michel, Urbino Cica. 2019. Plant Disease, 103 (6) : 1437.

First report of crown and root rot of tomato caused by Fusarium equiseti in Algeria. Yezli Wassim, Hamini-Kadar Nisserine, Zebboudj Nebia, Blondin Laurence, Tharreau Didier, Kihal Mebrouk. 2019. Journal of Plant Pathology, 101 (4) : 1249.

First scientific report of Pyricularia oryzae causing gray leaf spot disease on perennial ryegrass (Lolium perenne) in France. Milazzo Joëlle, Pordel Adel, Ravel Sébastien, Tharreau Didier. 2019. Plant Disease, 103 (5) : 1024.

Global trends in marine plankton diversity across kingdoms of life. Ibarbalz Federico M., Henry Nicolas, Martini Séverine, Busseni Greta, Byme Hannah, Coelho Luis Pedro, Endo Hisashi, Gasol Josep M., Gregory Ann C., Mahé Frédéric, Rigonato Janaina, Royo-Llonch Marta, Salazar Guillem, Sanz-Sáez Isabel, Scalco Eleonora, Soviadan Dodji, Zayed Ahmed A., Zingone Adriana, Labadie Karine, Ferland Joannie, et al.. 2019. Cell, 179 (5) : 1084-1097.

High‑throughput sequencing of complete genomes of ipomoviruses associated with an epidemic of cassava brown streak disease in the Comoros Archipelago. Scussel Sarah, Candresse Thierry, Marais Armelle, Claverie Sohini, Hoareau Murielle, Azali Hamza Abdou, Verdin Eric, Tepfer Mark, Filloux Denis, Fernandez Emmanuel, Roumagnac Philippe, Robene Isabelle, Lefeuvre Pierre, Jourda Cyril, Roux-Cuvelier Michel, Lett Jean-Michel. 2019. Archives of Virology, 164 (8) : 2193-2196.

How deep can ectomycorrhizas go? A case study on Pisolithus down to 4 meters in a Brazilian eucalypt plantation. Robin Agnès, Pradier Céline, Sanguin Hervé, Mahé Frédéric, Lambais George Rodrigues, de Araujo Pereira Arthur Prudêncio, Germon Amandine, Cintra Santana Maiele, Tisseyre Pierre, Pablo Anne-laure, Heuillard Pauline, Sauvadet Marie, Bouillet Jean-Pierre, Dini Andreote Fernando, Plassard Claude, De Moraes Gonçalves Jose Leonardo, Bran Nogueira Cardoso Elke Jurandy, Laclau Jean-Paul, Hinsinger Philippe, Jourdan Christophe. 2019. Mycorrhiza, 29 (6) : 637-648.

Identification and characterization of Xanthomonas albilineans causing sugarcane leaf scald in China using multilocus sequence analysis. Ntambo Mbuya Sylvain, Meng Jian-Yu, Rott Philippe, Royer Monique, Lin L. H., Zhang Hui-Li, Gao San-Ji. 2019. Plant Pathology, 68 (2) : 269-277.

Le phytobiome et l'agriculture de demain. Roumagnac Philippe, Sanguin Hervé. 2019. TDC - Textes et Documents pour la Classe (1124) : 34-37.

Musa balbisiana genome reveals subgenome evolution and functional divergence. Wang Zhuo, Miao Hongxia, Liu Juhua, Xu Biyu, Yao Xiaoming, Xu Chunyan, Zhao Shancen, Fang Xiaodong, Jia Caihong, Wang Jingyi, Zhang Jianbin, Li Jing, Xu Yi, Wang Jiashui, Ma Weihong, Wu Zhixiang, Yu Lili, Yang Yulan, Liu Chun, Guo Yu, Sun Silong, Baurens Franc-Christophe, Martin Guillaume, Salmon Frédéric, Garsmeur Olivier, Yahiaoui Nabila, Hervouet Catherine, Rouard Mathieu, Laboureau Nathalie, Habas Rémy, Ricci Sebastien, Peng Ming, Guo Anping, Xie Jianghui, Li Yin, Ding Zehong, Yan Yan, Tie Weiwei, D'Hont Angélique, Hu Wei, Jin Zhiqiang. 2019. Nature Plants, 5 : 810-821.

Mélanges variétaux et mélanges plurispécifiques – atouts et contraintes. Enjalbert Jérôme, Litrico Isabelle, Fournier Elisabeth, Médiène Safia, Gauffreteau Arnaud, Borg J., Corre Hellou Guenaëlle, Goldringer Isabelle, Hanachi M., Journet Etienne-Pascal, Justes Eric, Morel Jean-Benoit, Naudin Christophe, Sanguin Hervé, Valentin-Morison M., Verret V., Bedoussac Laurent. 2019. Innovations Agronomiques, 75 : 49-71.

Novel circular DNA viruses associated with Apiaceae and Poaceae from South Africa and New Zealand. Richet Cécile, Kraberger Simona, Filloux Denis, Bernardo Pauline, Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe, Varsani Arvind. 2019. Archives of Virology, 164 (1) : 237-242.

Pyricularia graminis-tritici is not the correct species name for the wheat blast fungus: Response to Ceresini et al (MPP 20 :2). Valent Barbara, Farman Mark, Tosa Yukio, Begerow Dominik, Fournier Elisabeth, Gladieux Pierre, Islam M. Totazzal, Kamoun Sophien, Kemler Martin, Kohn Linda M., Lebrun Marc-Henri, Stajich Jason E., Talbot Nicholas J., Terauchi Ryohei, Tharreau Didier, Zhang And Ning. 2019. Molecular Plant Pathology, 20 (2) : 173-179.

Pyricularia oryzae : quelques précisions taxonomiques. Tharreau Didier, Fournier Elisabeth, Gladieux Pierre, Lebrun Marc-Henri. 2019. Phytoma (723) : 44-45.

Rapid plant DNA and RNA extraction protocol using a bench drill. Ferreira Claudia Fortes, Gutierrez Dina, Kreuze Jan, Iskra Caruana Marie-Line, Chabannes Matthieu, Barbosa A.C.O., Santos T.A., Silva A.G.S., Santos R.M.F., Amorim Edson Perito, de Oliveira S.A.S., Jesus O.N.. 2019. Genetics and Molecular Research, 18 (3):gmr18394, 8 p.

Recombination and large structural variations shape interspecific edible bananas genomes. Baurens Franc-Christophe, Martin Guillaume, Hervouet Catherine, Salmon Frédéric, Yohomé David, Ricci Sebastien, Rouard Mathieu, Habas Rémy, Lemainque Arnaud, Yahiaoui Nabila, D'Hont Angélique. 2019. Molecular Biology and Evolution, 36 (1) : 97-111.

Seed degeneration of banana planting materials: Strategies for improved farmer access to healthy seed. Jacobsen Kim Sarah, Omondi A.B., Almekinders Conny, Alvarez Eduardo, Blomme Guy, Dita Miguel A., Iskra Caruana Marie-Line, Ocimati Walter, Tinzaara W., Kumar Lava, Staver Charles. 2019. Plant Pathology, 68 (2) : 207-228.

Variation in yield over time in a cacao factorial mating design: changes in heritability and longitudinal data analyses over 13 consecutive years. Tahi G.Mathias, Trebissou Caudou Inago, Ribeyre Fabienne, Guiraud Boguinard Sahin Hono, N' da Pokou Désiré, Cilas Christian. 2019. Euphytica, 215 (6):106, 12 p.

The modification of the flavonoid naringenin by Bradyrhizobium sp. strain ORS285 changes the nod genes inducer function to a growth stimulator. Nouwen Nico, Gargani Daniel, Giraud Eric. 2019. Molecular Plant-Microbe Interactions, 32 (11) : 1517-1525.

A multicellular way of life for a multipartite virus. Sicard Anne, Pirolles Elodie, Gallet Romain, Vernerey Marie-Stéphanie, Yvon Michel, Urbino Cica, Peterschmitt Michel, Gutierrez Serafin, Michalakis Yannis, Blanc Stéphane. 2019. eLife, 8:e43599, 14 p.

A new multi locus variable number of tandem repeat analysis scheme for epidemiological surveillance of Xanthomonas vasicola pv. musacearum, the plant pathogen causing bacterial wilt on banana and enset. Nakato Gloria Valentine, Fuentes Rojas Juan Luis, Vernière Christian, Blondin Laurence, Coutinho Teresa A., Mahuku George, Wicker Emmanuel. 2019. PloS One, 14 (4):e0215090, 22 p.

A new prevalent densovirus discovered in Acari. Insight from metagenomics in viral communities associated with two-spotted mite (Tetranychus urticae) populations. François Sarah, Mutuel Doriane, Duncan Alison B., Rodrigues Leonor R., Danzelle Celya, Lefevre Sophie, Santos Inês, Frayssinet Marie, Fernandez Emmanuel, Filloux Denis, Roumagnac Philippe, Froissart Rémy, Ogliastro Mylène. 2019. Viruses, 11 (3):233, 24 p.

An optimized microsatellite scheme for assessing populations of Xanthomonas phaseoli pv. manihotis. Rache Leidy, Blondin Laurence, Flores Carolina, Trujillo Cesar, Szurek Boris, Restrepo Silvia, Koebnik Ralf, Bernal Adriana Jimena, Vernière Christian. 2019. Phytopathology, 109 (5) : 859-869.

Accumulation and transmission of alphasatellite, betasatellite and tomato yellow leaf curl virus in susceptible and Ty-1-resistant tomato plants. Conflon Déborah, Granier Martine, Tiendrebeogo Fidèle, Gentit Pascal, Peterschmitt Michel, Urbino Cica. 2018. Virus Research, 253 : 124-134.

Alphasatellitidae: A new family with two subfamilies for the classication of geminivirus- and nanovirus-associated alphasatellites. Briddon Rob W., Martin Darren Patrick, Roumagnac Philippe, Navas-Castillo Jesús, Fiallo-Olivé Elvira, Moriones Enrique, Lett Jean-Michel, Zerbini F. Murilo, Varsani Arvind. 2018. Archives of Virology, 163 (9) : 2587-2600.

Assessment of genetic diversity and structure in cocoa trees (Theobroma cacao L.) in Côte d'Ivoire with reference to their susceptibility to Cocoa swollen shoot virus disease (CSSVD). Guiraud Boguinard Sahin Hono, Tahi G.Mathias, Fouet Olivier, Trebissou Caudou Inago, Pokou N. Desiré, Rivallan Ronan, Argout Xavier, Koffi Kouame Christophe, Koné Boaké, Zoro Bi Arsène Irié, Lanaud Claire. 2018. Tree Genetics and Genomes, 14 (52), 21 p.

Characterization of alfalfa virus F, a new member of the genus Marafivirus. Nemchinov Lev G., François Sarah, Roumagnac Philippe, Ogliastro Mylène, Hammond Rosemarie W., Mollov Dimitre S., Filloux Denis. 2018. PloS One, 13 (9):e0203477, 11 p.

Characterization of begomoviruses sampled during severe epidemics in tomato cultivars carrying the Ty-1 gene. Torre Covadonga, Donaire Livia, Gómez-Aix Cristina, Juárez Miguel, Peterschmitt Michel, Urbino Cica, Hernando Yolanda, Agüero Jesús, Aranda Miguel A.. 2018. International Journal of Molecular Sciences, 19 (9):2614, 22 p.

Coexistence of multiple endemic and pandemic lineages of the rice blast pathogen. Gladieux Pierre, Ravel Sébastien, Rieux Adrien, Cros-Arteil Sandrine, Adreit Henri, Milazzo Joëlle, Thierry Maud, Fournier Elisabeth, Terauchi Ryohei, Tharreau Didier. 2018. Mbio, 9 (2):e01806, 17 p.

Comparison of loop-mediated isothermal amplification, polymerase chain reaction, and selective isolation assays for detection of Xanthomonas albilineans from sugarcane. Duarte Dias Vanessa, Fernandez Emmanuel, Cunha Marcos G., Pieretti Isabelle, Hincapie Martha, Roumagnac Philippe, Comstock Jack C., Rott Philippe. 2018. Tropical Plant Pathology, 43 (4) : 351-359.

First report and genomic sequence of a new alfalfa marafivirus from France. Nemchinov Lev G., François Sarah, Roumagnac Philippe, Mollov Dimitre S., Filloux Denis. 2018. Phytopathology, 108 (10S), p. S1.188 International Congress of Plant Pathology (ICPP2018). 11, Boston, États-Unis, 29 Juillet 2018/3 Août 2018.

First report of alfalfa leaf curl Virus affecting alfalfa (Medicago sativa) in Jordan, Lebanon, Syria, and Tunisia. Kumari Safaa G., Moukahel A.R., Richet Cécile, Galzi Serge, Filloux Denis, Roumagnac Philippe, Asaad Nader, Hijazi Jomana, Mghandef Samia. 2018. Plant Disease, 102 (10), 2052, 2 p.

First report of alfalfa leaf curl Virus from alfalfa in Iran. Davoodi Zohreh, Heydarnejad Jahangir, Massumi Hossein, Richet Cécile, Galzi Serge, Filloux Denis, Roumagnac Philippe. 2018. Plant Disease, 102 (11) : p. 2385.

Gene flow between divergent cereal- and grass-specific lineages of the rice blast fungus Magnaporthe oryzae. Gladieux Pierre, Condon Bradford, Ravel Sébastien, Soanes Darren M., Maciel João Leodato Nunes, NhaniJúnior Antonio, Chen Li, Terauchi Ryohei, Lebrun Marc-Henri, Tharreau Didier, Mitchell Thomas K., Pedley Kerry F., Valent Barbara, Talbot Nicholas J., Farman Mark, Fournier Elisabeth. 2018. Mbio, 9 (1):e01219, 17 p.

Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale. Bernardo Pauline, Charles-Dominique Tristan, Barakat Mohamed, Ortet Philippe, Fernandez Emmanuel, Filloux Denis, Hartnady Penelope, Rebelo Tony A., Cousins Stephen, Mesleard François, Cohez Damien, Yaverkovski Nicole, Varsani Arvind, Harkins Gordon William, Peterschmitt Michel, Malmstrom Carolyn, Martin Darren Patrick, Roumagnac Philippe. 2018. ISME Journal, 12 : 174-184.

Increase in taxonomic assignment efficiency of viral reads in metagenomic studies. François Sarah, Filloux Denis, Frayssinet Marie, Roumagnac Philippe, Martin Darren Patrick, Ogliastro Mylène, Froissart Rémy. 2018. Virus Research, 244 : 230-234.

Inhibition of Phytophthora species, agents of cocoa black pod disease, by secondary metabolites of Trichoderma species. Pakora Gilles-Alex, Mpika Joseph, Koné Daouda, Ducamp Michel, Kébé Ismael S., Nay Bastien, Buisson Didier. 2018. Environmental Science and Pollution Research, 25 (30) : 29901-29909.

Long-term survival of blast pathogen in infected rice residues as major source of primary inoculum in high altitude upland ecology. Raveloson Harinjaka, Ratsimiala Ramonta Isabelle, Tharreau Didier, Sester Mathilde. 2018. Plant Pathology, 67 : 610-618.

Molecular epidemiology of bacterial wilt in the Madagascar highlands caused by Andean (Phylotype IIB-1) and African (Phylotype III) brown rot strains of the Ralstonia solanacearum species complex. Ravelomanantsoa Santatra, Vernière Christian, Rieux Adrien, Costet Laurent, Chiroleu Frédéric, Arribat Sandrine, Cellier Gilles, Pruvost Olivier, Poussier Stéphane, Robène Isabelle, Guérin Fabien, Prior Philippe. 2018. Frontiers in Plant Science, 8:2258, 17 p.

Nanopore-based detection and characterization of yam viruses. Filloux Denis, Fernandez Emmanuel, Loire Etienne, Claude Lisa, Galzi Serge, Candresse Thierry, Winter Stephan, Jeeva M.L., Makeshkumar T., Martin Darren Patrick, Roumagnac Philippe. 2018. Scientific Reports, 8:17879, 11 p.

Nanovirus‐alphasatellite complex identi ed in Vicia cracca in the Rhône delta region of France. Gallet Romain, Kraberger Simona, Filloux Denis, Galzi Serge, Fontes Hugo, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2018. Archives of Virology, 163 (3) : 695-700.

Narrow-sense heritability estimates of resistance of sugarcane to Sugarcane yellow leaf virus. Hoarau Jean-Yves, Roques Danièle, Efile Jean-Claude, Adjanoh-Lubin Nadia, Débibakas Sarah, Daugrois Jean-Heinrich. 2018. International Sugar Journal, 120:1435 : 548-553.

Next generation sequencing elucidates cacao badnavirus diversity and reveals the existence of more than ten viral species. Muller Emmanuelle, Ravel Sébastien, Agret Clément, Abrokwah Francis, Dzahini-Obiatey Henry, Galyuon I., Kouakou K., Jeyaseelan E.C., Allainguillaume Joel, Wetten Andrew. 2018. Virus Research, 244 : 235-251.

Notes on recombination and reassortment in multipartite/segmented viruses. Varsani Arvind, Lefeuvre Pierre, Roumagnac Philippe, Martin Darren Patrick. 2018. Current Opinion in Virology, 33 : 156-166.

Ortervirales: New virus order unifying five families of reverse-transcribing viruses. Krupovic Mart, Blomberg Jonas, Coffin John M., Dasgupta Indranil, Fan Hung, Geering Andrew D., Gifford Robert, Harrach Balázs, Hull Roger, Johnson Welkin, Kreuze Jan, Lindemann Dirk, Llorens Carlos, Lockhart Benham E.L., Mayer Jens, Muller Emmanuelle, Olszewski Neil E., Pappu Hanu R., Pooggin Mikhail, Richert-Pöggeler Katja R., Sabanadzovic Sead, Sanfaçon Hélène, Schoelz James E., Seal Susan, Stavolone Livia, Stoye Jonathan P., Teycheney Pierre-Yves, Tristem Michael, Koonin Eugene V., Kuhn Jens H.. 2018. Journal of Virology, 92 (12):e00515-18, 5 p.

Pyricularia oryzae causing blast on foxtail millet in Iran. Pordel Adel, Tharreau Didier, Cros-Arteil Sandrine, Shams Esmaeil, Moumeni Ali, Mirzadi Gohari Amir, Javan-Nikkhah Mohammad. 2018. Plant Disease, 102 (9), 1853

Rubber plantation ageing controls soil biodiversity after land conversion from cassava. Peerawat Monrawee, Blaud Aimeric, Trap Jean, Chevallier Tiphaine, Alonso Pascal, Gay Frédéric, Thaler Philippe, Spor Ayme, Sebag David, Choosai Chutinan, Suvannang Nopmanee, Sajjaphan Kannika, Brauman Alain. 2018. Agriculture, Ecosystems and Environment, 257 : 92-102.

Specific recognition of two MAX effectors by integrated HMA domains in plant immune receptors involves distinct binding surfaces. Guo Liwei, Cesari Stella, de Guillen Karine, Chalvon Véronique, Mammri Léa, Ma Mengqi, Meusnier Isabelle, Bonnot François, Padilla André, Peng You-Liang, Liu Junfeng, Kroj Thomas. 2018. Proceedings of the National Academy of Sciences of the United States of America, 115 (45) : 11637-11642.

Validação de protocolo de extração de dna sem uso de nitrogênio líquido. Araújo Santos Taís, Oliveira Barbosa Ana Cláudia, Kreuze Jan, Iskra Caruana Marie-Line, Alves Santos de Oliveira Saulo, Fortes Ferreira Claudia. 2018. Revista Recursos Genéticos News, 4 (3), « n.spéc. » Anais do V Congresso Brasileiro de Recursos Genéticos - Fortaleza 06 a 09 de novembro de 2018., Résumé : 590. Congresso Brasileiro de Recursos Genéticos. 5, Fortaleza, Brésil, 6 Novembre 2018/9 Novembre 2018.

Viral metagenomic-based screening of sugarcane from florida reveals occurrence of six sugarcane-infecting viruses and high prevalence of Sugarcane yellow leaf virus. Filloux Denis, Fernandez Emmanuel, Comstock Jack C., Mollov Dimitre S., Roumagnac Philippe, Rott Philippe. 2018. Plant Disease, 102 (11) : 2317-2323.

World management of Geminiviruses. Rojas Maria R., Macedo Monica A., Maliano Minor R., Soto-Aguilar Maria, Souza Juliana O., Briddon Rob W., Kenyon Lawrence, Rivera-Bustamante Rafael, Zerbini F. Murilo, Adkins Scott, Legg James, Kvarnheden Anders, Wintermantel William M., Sudarshana Mysore R., Peterschmitt Michel, Lapidot Moshe, Martin Darren Patrick, Moriones Enrique, Inoue-Nagata Alice K., Gilbertson Robert L.. 2018. Annual Review of Phytopathology, 56 : 637-677.

The impact of soil treatments on black pod rot (caused by Phytophthora megakarya) of cacao in Cameroon. Ndoungue Mireille Minette, Petchayo Sandrine, Techou Zaccharie, Nana Wilfrid, Nembot Fomba Christian Gaele, Fontem Ajong Dominic, Ten Hoopen Gerben Martijn. 2018. Biological Control, 123 : 9-17.

The structure and function of the global citrus rhizosphere microbiome. Xu Jin, Zhang Yunzeng, Zhang Pengfan, Trivedi Pankaj, Riera Nadia, Wang Yayu, Liu Xin, Fan Guangyi, Tang Jiliang, Coletta-Filho Helvécio D, Cubero Jaime, Deng Xiaoling, Ancona Veronica, Lu Zhanjun, Zhong Balian, Roper Caroline, Capote Nieves, Catara Vittoria, Pietersen Gerhard, Vernière Christian, Al-Sadi Abdullah M., Li Lei, Yang Fan, Xu Xun, Wang Jian, Yang Huanming, Jin Tao, Wang Nian. 2018. Nature Communications, 9:4894, 10 p.

The typical RB76 recombination breakpoint of the invasive recombinant tomato yellow leaf curl virus of Morocco can be generated experimentally but is not positively selected in tomato. Belabess Zineb, Urbino Cica, Granier Martine, Tahiri Abdessalem, Blenzar Abdelali, Peterschmitt Michel. 2018. Virus Research, 243 : 44-51.

The westward journey of alfalfa leaf curl virus. Davoodi Zohreh, Bejerman Nicolás, Richet Cécile, Filloux Denis, Kumari Safaa G., Chatzivassiliou Elisavet K., Galzi Serge, Julian Charlotte, Samarfard Samira, Trucco Verónica, Giolitti Fabián, Fiallo-Olivé Elvira, Navas-Castillo Jesús, Asaad Nader, Rahman Moukahel Abdul, Hijazi Jomana, Mghandef Samia, Heydarnejad Jahangir, Massumi Hossein, Varsani Arvind, Dietzgen Ralf G., Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe. 2018. Viruses, 10 (10):542, 16 p.

Adaptation of genetically monomorphic bacteria: evolution of copper resistance through multiple horizontal gene transfers of complex and versatile mobile genetic elements. Richard Damien, Ravigné Virginie, Rieux Adrien, Facon Benoît, Boyer Claudine, Boyer Karine, Grygiel Pierre, Javegny Stéphanie, Terville Marie Annabelle, Canteros B.I., Robene Isabelle, Vernière Christian, Chabirand Aude, Pruvost Olivier, Lefeuvre Pierre. 2017. Molecular Ecology, 26 (7), n.spéc. Microbial Local Adaptation : 2131-2149.

Bioassay to Study the Attachment of Xanthomonas albilineans Attachment on sugarcane leaves. Mensi Imène, Daugrois Jean-Heinrich, Rott Philippe. 2017. Bio-Protocol, 7 (2):e2111, 15 p.

Capulavirus and Grablovirus: Two new genera in the family Geminiviridae. Varsani Arvind, Roumagnac Philippe, Fuchs Marc, Navas-Castillo Jesús, Moriones Enrique, Idris Ali, Briddon Rob W., Rivera-Bustamante Rafael, Zerbini F. Murilo, Martin Darren Patrick. 2017. Archives of Virology, 162 (6) : 1819-1831.

Complete genome sequences of cowpea polerovirus 1 and cowpea polerovirus 2 infecting cowpea plants in Burkina Faso. Palanga Essowé, Martin Darren Patrick, Galzi Serge, Zabré Jean, Bouda Zakaria, Bouma Neya James, Sawadogo Mahamadou, Traoré Oumar, Peterschmitt Michel, Roumagnac Philippe, Filloux Denis. 2017. Archives of Virology, 162 (7) : 2149-2152.

Complete genome sequences of six copper-resistant Xanthomonas citri pv. citri strains causing Asiatic citrus canker, obtained using long-read technology. Richard Damien, Boyer Claudine, Vernière Christian, Canteros B.I., Lefeuvre Pierre, Pruvost Olivier. 2017. Genome Announcements, 5 (12):e00010-17, 2 p.

Conservation agriculture cropping systems reduce blast disease in upland rice by affecting plant nitrogen nutrition. Dusserre Julie, Raveloson Harinjaka, Michellon Roger, Gozé Eric, Auzoux Sandrine, Sester Mathilde. 2017. Field Crops Research, 204 : 208-221.

Controlled irrigation and nitrogen, phosphorous and potassium fertilization affect the biochemical composition and quality of Arabica coffee beans. Vinecky Felipe, Davrieux Fabrice, Mera Ana Carolina, Alves Gabriel Sergio Costa, Lavagnini Gabriel Vinicius, Leroy Thierry, Bonnot François, Rocha Omar C., Bartholo Gabriel Ferreira, Guerra Antonio Fernando, Rodrigues Gustavo Costa, Marraccini Pierre, Andrade Alan Carvalho. 2017. Journal of Agricultural Science, 155 (6) : 902-918.

Epigenetic regulation of antagonistic receptors confers rice blast resistance with yield balance. Deng Yi-Wen, Zhai Keran, Xie Zhen, Yang Dongyong, Zhu Xu-Dong, Liu Junzhong, Wang Xin, Qin Peng, Yang Yuanzhu, Zhang Guomin, Li Qun, Zhang Jianfu, Wu Shuangqing, Milazzo Joëlle, Mao Bizeng, Wang Ertao, Xie Huaan, Tharreau Didier, He Zuhua. 2017. Science, 355 (6328) : 962-965.

Exploiting genetic information to trace plant virus dispersal in landscapes. Picard Coralie, Dallot Sylvie, Brunker Kirstyn, Berthier Karine, Roumagnac Philippe, Soubeyrand Samuel, Jacquot Emmanuel, Thébaud Gaël. 2017. Annual Review of Phytopathology, 55 : 139-160.

Fine mapping of Pi57 conferring broad spectrum resistance against Magnaporthe oryzae in introgression line IL-E1454 derived from Oryza longistaminata. Dong Liying, Liu Shuguang, Xu Peng, Deng Wei, Li Xundong, Tharreau Didier, Li Jing, Zhou Jiawu, Wang Qun, Tao Dayun, Yang Qinzhong. 2017. PloS One, 12 (10):e0186201, 11 p.

First report of Xanthomonas citri pv. mangiferaeindicae causing mango bacterial canker on Mangifera indica in Togo. Zombré C., Wonni Issa, Ouedraogo S., Kpemoua Kossi, Assignon K., Sankara Philippe, Vernière Christian, Boyer Claudine, Boyer Karine, Javegny Stéphanie, Pruvost Olivier. 2017. Plant Disease, 101 (3) : p. 503.

First report of copper-resistant Xanthomonas citri pv. citri pathotype A causing Asiatic citrus canker in Réunion, France. Richard Damien, Tribot N., Boyer Claudine, Terville Marie Annabelle, Boyer Karine, Javegny Stéphanie, Roux-Cuvelier Michel, Pruvost Olivier, Moreau Aurélie, Chabirand Aude, Vernière Christian. 2017. Plant Disease, 101 (3) : p. 503.

First report of maize yellow mosaic virus infecting maize in Burkina Faso. Palanga Essowé, Longué R.D.S., Koala Moustapha, Néya J.B., Traoré Oumar, Martin Darren Patrick, Peterschmitt Michel, Filloux Denis, Roumagnac Philippe. 2017. New Disease Reports, 35 : p. 26.

Genome sequences of a capulavirus infecting Plantago lanceolata in the Aland archipelago of Finland. Susi Hanna, Laine Anna-Liisa, Filloux Denis, Kraberger Simona, Farkas Kata, Bernardo Pauline, Frilander Mikko J., Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2017. Archives of Virology, 162 (7) : 2041-2045.

ICTV virus taxonomy profile: Geminiviridae. Zerbini F. Murilo, Briddon Rob W., Idris Ali, Martin Darren Patrick, Moriones Enrique, Navas-Castillo Jesús, Rivera-Bustamante Rafael, Roumagnac Philippe, Varsani Arvind. 2017. Journal of General Virology, 98 : 131-133.

Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and Réunion. Boukari Wardatou, Alcala-Briseño Ricardo I., Kraberger Simona, Fernandez Emmanuel, Filloux Denis, Daugrois Jean-Heinrich, Comstock Jack C., Lett Jean-Michel, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe, Polston Jane E., Rott Philippe. 2017. Virology Journal, 14:146, 8 p.

SituResp®: A time- and cost-effective method to assess basal soil respiration in the field. Thoumazeau Alexis, Gay Frédéric, Alonso Pascal, Suvannang Nopmanee, Phongjinda Audjima, Panklang Phantip, Chevallier Tiphaine, Bessou Cécile, Brauman Alain. 2017. Applied Soil Ecology, 121 : 223-230.

Testing differences between pathogen compositions with small samples and sparse data. Soubeyrand Samuel, Garreta Vincent, Monteil Caroline, Suffert Frédéric, Goyeau Henriette, Berder Julie, Moinard Jacques, Fournier Elisabeth, Tharreau Didier, Morris Cindy E., Sache Ivan. 2017. Phytopathology, 107 (10) : 1199-1208.

Total synthesis and biological assessment of novel albicidins discovered by mass spectrometric networking. Von Eckardstein Leonard, Petras Daniel, Dang Tam, Cociancich Stéphane, Sabri Souhir, Grätz Stefan, Kerwat Dennis, Seidel Maria, Pesic Alexander, Dorrestein Pieter C., Royer Monique, Weston John B., Süssmuth Roderich. 2017. Chemistry - A European Journal, 23 (61) : 15316-15321.

Two novel Alphaflexiviridae members revealed by deep sequencing of the Vanilla (Orchidaceae) virome. Grisoni Michel, Marais Armelle, Filloux Denis, Saison Anne, Faure Chantal, Julian Charlotte, Theil Sébastien, Contreras Sandy, Teycheney Pierre-Yves, Roumagnac Philippe, Candresse Thierry. 2017. Archives of Virology, 162 (12) : 3855-3861.

Un antibiotique découvert dans la canne à sucre. Cociancich Stéphane, Royer Monique, Rott Philippe. 2017. La Recherche (524) : 62-65.

A foliar disease simulation model to assist the design of new control methods against black leaf streak disease of banana. Landry Clara, Bonnot François, Ravigné Virginie, Carlier Jean, Rengifo Domingo, Vaillant Jean, Abadie Catherine. 2017. Ecological Modelling, 359 : 383-397.

Analyse de la diversité génétique des isolats de Magnaporthe oryzae du Burkina Faso et du Togo par les marqueurs microsatellites (SSRs). Kassankogno Abalo Itolou, Ouedraogo Ibrahima, Adreit Henri, Milazzo Joëlle, Ouédraogo Léonard, Sankara Philippe, Tharreau Didier. 2016. International Journal of Biological and Chemical Sciences, 10 (5) : 2259-2267.

Association mapping of resistance to rice blast in upland field conditions. Raboin Louis-Marie, Ballini Elsa, Tharreau Didier, Ramanantsoanirina Alain, Frouin Julien, Courtois Brigitte, Ahmadi Nourollah. 2016. Rice, 9 (59), 12 p.

Bioactivity-guided mass spectral net working reveals a new set of allbicidin derivatives from Xanthomonas albilineans. Dang Tam, Petras Daniel, Pesic Alexander, Cociancich Stéphane, Royer Monique, Dorrestein Pieter C., Süssmuth Roderich. 2016. Journal of Peptide Science, 22, n.spéc. S2 : S159-S160. European Peptide Symposium, Leipzig, Allemagne, 4 Septembre 2016/9 Septembre 2016.

Chromosome segregation in an allotetraploid banana hybrid (AAAB) suggests a translocation between the A and B genomes and results in eBSV-free offsprings. Noumbissie Touko Guy Blaise, Chabannes Matthieu, Bakry Frédéric, Ricci Sébastien, Cardi Céline, Njembele J. Célestin, Yohoume D., Tomekpé Kodjo, Iskra Caruana Marie-Line, D'Hont Angélique, Baurens Franc-Christophe. 2016. Molecular Breeding, 36 (4):38, 14 p.

Combating a global threat to a clonal crop: Banana black sigatoka pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) genomes reveal clues for disease control. Arango Isaza Rafael E., Diaz-Trujillo Caucasella, Dhillon Braham, Aerts Andrea, Carlier Jean, Crane Charles F., de Jong Tristan V., De Vries Ineke, Dietrich Robert, Farmer Andrew, Fortes Fereira Claudia, Garcia Suzana, Guzman Mauricio, Hamelin Richard C., Lindquist Erika, Mehrabi Rahim, Quiros Madrigal Olman, Schmutz Jeremy, Shapiro Harris, Reynolds Elizabeth, Scalliet Gabriel, Souza Manoel, Stergiopoulos Ioannis, Van der Lee Theo A.J., De Wit Pierre J. G. M., Zapater Marie-Françoise, Zwiers Lute-Harm, Grigoriev Igor, Goodwin Stephen B., Kema Gert H.J.. 2016. PLoS Genetics, 12 (8):e1005876, 36 p.

Discovery of parvovirus-related sequences in an unexpected broad range of animals. François Sarah, Filloux Denis, Roumagnac Philippe, Bigot D., Gayral Philippe, Martin Darren Patrick, Froissart Rémi, Ogliastro Mylène. 2016. Scientific Reports, 6 (30880), 13 p.

Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae. Islam M. Totazzal, Croll Daniel, Gladieux Pierre, Soanes Darren M., Persoons Antoine, Bhattacharjee Pallab, Hossain Md. Shaid, Gupta Dipali Rani, Rahman Md Mahbubur, Mahboob M. Golam, Cook Nicola, Salam Moin U., Surovy Musrat Zahan, Sancho Vanessa Bueno, Maciel João Leodato Nunes, NhaniJúnior Antonio, Castroagudín Vanina Lilián, de Assis Reges Juliana T., Ceresini Paulo Cezar, Ravel Sébastien, Kellner Ronny, Fournier Elisabeth, Tharreau Didier, Lebrun Marc-Henri, McDonald Bruce A., Stitt Timothy, Swan Daniel, Talbot Nicholas J., Saunders Diane G.O., Win Joe, Kamoun Sophien. 2016. BMC Biology, 14 (84), 11 p.

Evolution of compatibility range in the rice-Magnaporthe oryzae system: An uneven distribution of R genes between rice subspecies. Gallet Romain, Fontaine Colin, Bonnot François, Milazzo Joëlle, Tertois Christophe, Adreit Henri, Ravigné Virginie, Fournier Elisabeth, Tharreau Didier. 2016. Phytopathology, 106 (4) : 348-354.

First report of Xanthomonas citri pv. citri pathotype A causing Asiatic citrus canker in Martinique, France. Richard Damien, Boyer Claudine, Javegny Stéphanie, Boyer Karine, Grygiel Pierre, Pruvost Olivier, Rioualec Anne-Laure, Rakotobe Veromanitra, Iotti Jean, Picard R., Vernière Christian, Audusseau Corinne, François C., Olivier Valérie, Moreau A., Chabirand Aude. 2016. Plant Disease, 100 (9) : p. 1946.

Generic names in Magnaporthales. Zhang Ning, Luo Jing, Rossman Amy Y., Aoki Takayuki, Chuma Izumi, Crous P.W., Dean Ralph, De Vries Ronald P., Donofrio Nicole, Hyde Kevin D., Lebrun Marc-Henri, Talbot Nicholas J., Tharreau Didier, Tosa Yukio, Valent Barbara, Wang Zonghua, Xu Jin-Rong. 2016. IMA Fungus, 7 (1) : 155-159.

Genetic transformation and evaluation of two sweet sorghum genotypes for resistance to spotted stemborer, Chilo partellus (Swinhoe). Visarada K.B.R.S., Prasad G. Shyam, Royer Monique. 2016. Plant Biotechnology Reports, 10 (5) : 277-289.

Geographical distribution of Cacao swollen shoot virus molecular variability in Ghana. Abrokwah Francis, Dzahini-Obiatey Henry, Galyuon Isaac, Osae-Awuku Francis, Muller Emmanuelle. 2016. Plant Disease, 100 (10) : 2011-2017.

How endogenous plant pararetroviruses shed light on Musa evolution. Duroy Pierre-Olivier, Perrier Xavier, Laboureau Nathalie, Jacquemoud-Collet Jean-Pierre, Iskra Caruana Marie-Line. 2016. Annals of Botany, 117 (4) : 625-641.

Low genetic diversity of Banana bunchy top virus, with a sub-regional pattern of variation, in Democratic Republic of Congo. Mukwa Lyna Fama Tongo, Gillis A., Vanhese V., Romay Gustavo, Galzi Serge, Laboureau Nathalie, Kalonji Mbuyi A., Iskra Caruana Marie-Line, Bragard Claude. 2016. Virus Genes, 52 (6) : 900-905.

Marker-assisted breeding of Musa balbisiana genitors devoid of infectious endogenous Banana streak virus sequences. Umber Marie, Pichaut Jean-Philippe, Farinas Benoît, Laboureau Nathalie, Janzac Bérenger, Plaisir Kaïssa, Pressat Gersende, Baurens Franc-Christophe, Chabannes Matthieu, Duroy Pierre-Olivier, Guiougou Chantal, Delos Jean-Marie Eric, Jenny Christophe, Iskra Caruana Marie-Line, Salmon Frédéric, Teycheney Pierre-Yves. 2016. Molecular Breeding, 36 (6):e74, 11 p.

Metagenomic-based screening and molecular characterization of cowpea-infecting viruses in Burkina Faso. Palanga Essowé, Filloux Denis, Martin Darren Patrick, Fernandez Emmanuel, Gargani Daniel, Ferdinand Romain, Zabré Jean, Bouda Zakaria, Neya Bouma, Sawadogo Mahamadou, Traoré Oumar, Peterschmitt Michel, Roumagnac Philippe. 2016. PloS One, 11 (10):e0165188, 21 p.

Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa. Bernardo Pauline, Muhire Brejnev, François Sarah, Deshoux Maëlle, Hartnady Penelope, Farkas Kata, Kraberger Simona, Filloux Denis, Fernandez Emmanuel, Galzi Serge, Ferdinand Romain, Granier Martine, Marais Armelle, Monge Blasco Pablo, Candresse Thierry, Escriu Fernando, Varsani Arvind, Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe. 2016. Virology, 493 : 142-153.

Multilocus variable number of tandem repeat analysis reveals multiple introductions in Spain of Xanthomonas arboricola pv. pruni, the causal agent of bacterial spot disease of stone fruits and almond. López-Soriano Pablo, Boyer Karine, Morente María Clara, Peñalver Javier, Palacio-Bielsa Ana, Vernière Christian, López María M., Pruvost Olivier. 2016. PloS One, 11 (9):e0163729, 18 p.

The O-carbamoyl-transferase Alb15 is responsible for the modification of albicidin. Petras Daniel, Kerwat Dennis, Pesic Alexander, Hempel Benjamin, Von Eckardstein Leonard, Semsary Siamak, Arasté Julie, Marguerettaz Mélanie, Royer Monique, Cociancich Stéphane, Süssmuth Roderich. 2016. ACS Chemical Biology, 11 (5) : 1198-1204.

The O-carbamoyl-transferase albis is responsible for the modification of albicidin. Hempel Benjamin, Petras Daniel, Kerwat Dennis, Pesic Alexander, Semsary Siamak, Von Eckardstein Leonard, Arasté Julie, Marguerettaz Mélanie, Royer Monique, Cociancich Stéphane, Süssmuth Roderich. 2016. Journal of Peptide Science, 22, n.spéc. S2 : S125-S126. European Peptide Symposium, Leipzig, Allemagne, 4 Septembre 2016/9 Septembre 2016.

Pathogen effectors and plant immunity determine specialization of the blast fungus to rice subspecies. Liao Jingjing, Huang Huichuan, Meusnier Isabelle, Adreit Henri, Ducasse Aurélie, Bonnot François, Pan Lei, He Xiahong, Kroj Thomas, Fournier Elisabeth, Tharreau Didier, Gladieux Pierre, Morel Jean-Benoit. 2016. eLife, 5:e19377, 18 p.

Prevalence of Sugarcane yellow leaf virus in sugarcane producing regions in Kenya revealed by reverse transcription loop-mediated isothermal amplification method. Amata Ruth Lodenyi, Fernandez Emmanuel, Filloux Denis, Martin Darren Patrick, Rott Philippe, Roumagnac Philippe. 2016. Plant Disease, 100 (2) : 260-268.

The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Guignon Valentin, Hueber Yann, Rouard Mathieu, Bocs Stéphanie, Couvin David, De Lamotte Frédéric, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Gkanogiannis Anestis, Hamelin Chantal, Larivière Delphine, Martin Guillaume, Ortega Enrique, Pitollat Bertrand, Pointet Stéphanie, Ruiz Manuel, Gautier Sarah, Summo Marilyne, This Dominique, Ravel Sébastien, Larmande Pierre, Monat Cécile, Sabot François, Tando Ndomassi, Tranchant-Dubreuil Christine, Sempere Guilhem, Dereeper Alexis. 2016. Current Plant Biology, 7-8 : 6-9.

Surface polysaccharides and quorum sensing are involved in the attachment and survival of Xanthomonas albilineans on sugarcane leaves. Mensi Imène, Daugrois Jean-Heinrich, Pieretti Isabelle, Gargani Daniel, Fleites Laura, Noëll Julie, Bonnot François, Gabriel Dean W., Rott Philippe. 2016. Molecular Plant Pathology, 17 (2) : 236-246.

Using ecology, physiology, and genomics to understand host specificity in Xanthomonas. Jacques Marie Agnès, Arlat Mathieu, Boulanger Alice, Boureau Tristan, Carrère Sébastien, Cesbron Sophie, Chen Nicolas W.G., Cociancich Stéphane, Darrasse Armelle, Denancé Nicolas, Fischer-Le-Caux Marion, Gagnevin Lionel, Koebnik Ralf, Lauber Emmanuelle, Noel Laurent D., Pieretti Isabelle, Portier Perrine, Pruvost Olivier, Rieux Adrien, Robène Isabelle, Royer Monique, Szurek Boris, Verdier Valérie, Vernière Christian. 2016. Annual Review of Phytopathology, 54 : 163-187.

The non-canonical tomato yellow leaf curl virus recombinant that displaced its parental viruses in Southern Morocco exhibits a high selective advantage in experimental conditions. Belabess Zineb, Peterschmitt Michel, Granier Martine, Tahiri Abdessalem, Blenzar Abdelali, Urbino Cica. 2016. Journal of General Virology, 97 (12) : 3433-3445.

A peptidoglycan-remodeling enzyme is critical for bacteroid differentiation in Bradyrhizobium spp. during legume symbiosis. Gully Djamel, Gargani Daniel, Bonaldi Katia, Grangeteau Cédric, Chaintreuil Clémence, Fardoux Joël, Nguyen Phuong, Marchetti Roberta, Nouwen Nico, Molinaro Antonio, Mergaet Peter, Giraud Eric. 2016. Molecular Plant-Microbe Interactions, 29 (6) : 447-457.

Alfalfa leaf curl virus: an aphid-transmitted geminivirus. Roumagnac Philippe, Granier Martine, Bernardo Pauline, Deshoux Maëlle, Ferdinand Romain, Galzi Serge, Fernandez Emmanuel, Julian Charlotte, Abt Isabelle, Filloux Denis, Mesleard François, Varsani Arvind, Blanc Stéphane, Martin Darren Patrick, Peterschmitt Michel. 2015. Journal of Virology, 89 (18) : 9683-9688.

Announcement of the international citrus microbiome (phytobiome) consortium. Wang Nian, Jin T., Trivedi P., Setubal J.C., Tang J., Machado Marcos Antonio, Triplett E., Coletta-Filho Helvécio D, Cubero Jaime, Deng Xiaoling, Wang X., Zhou Changyong, Ancona Veronica, Lu Zhanjun, Dutt M., Borneman J., Rolshausen P.E., Roper Caroline, Vidalakis G., Capote Nieves, Catara Vittoria, Pietersen Gerhard, Al-Sadi Abdullah M., Srivastava Amit Kumar, Graham J.H., Leveau J., Ghimire Sita R., Vernière Christian, Zhang Y.. 2015. Journal of Citrus Pathology, 2 (1) : 1-2.

Bridgehead invasion of a monomorphic plant pathogenic bacterium: Xanthomonas citri pv. citri, an emerging citrus pathogen in Mali and Burkina Faso. Leduc Alice, Traoré Yaya Nadia, Boyer Karine, Magne Maxime, Grygiel Pierre, Juhasz C.C., Boyer Claudine, Guérin Fabien, Wonni Issa, Ouédraogo Léonard, Vernière Christian, Ravigné Virginie, Pruvost Olivier. 2015. Environmental Microbiology, 17 (11) : 4429-4442.

Cry1Ac insecticidal protein levels in genetically modified Coffea canephora Pierre coffee plants were negatively correlated with the growth speed in a field experiment. Perthuis Bernard, Vassal Jean-Michel, Fenouillet Catherine, Leroy Thierry. 2015. Euphytica, 202 (3) : 373-383.

Deciphering genome content and evolutionary relationships of isolates from the fungus Magnaporthe oryzae attacking different host plants. Chiapello Hélène, Mallet Ludovic, Guerin Cyprien, Aguileta Gabriela, Amselem Joelle, Kroj Thomas, Ortega-Abboud Enrique, Lebrun Marc-Henri, Henrissat Bernard, Gendrault Annie, Rodolphe François, Tharreau Didier, Fournier Elisabeth. 2015. Genome Biology and Evolution, 7 (10) : 2896-2912.

Diversity of ACE1 genotypes of the rice blast fungus (Magnaporthe oryzae B.C. Couch) in the Philippines. Lopez Ana Liza C., Cumagun Christian Joseph R., Tharreau Didier. 2015. IAMURE International Journal of Ecology and Conservation, 16 (1) : 80-92.

Draft genome sequence of Xanthomonas sacchari strain LMG 476. Pieretti Isabelle, Bolot Stéphanie, Carrère Sébastien, Barbe Valérie, Cociancich Stéphane, Rott Philippe, Royer Monique. 2015. Genome Announcements, 3 (2):e00146, 2 p.

Ethylene response factors are controlled by multiple harvesting stresses in Hevea brasiliensis. Putranto Riza Arief, Duan Cuifang, Kuswanhadi, Chaidamsari Tetty, Rio Maryannick, Piyatrakul Piyanuch, Herlinawati Eva, Pirrello Julien, Dessailly Florence, Leclercq Julie, Bonnot François, Tang Chaorong, Hu Songnian, Montoro Pascal. 2015. PloS One, 10 (4):e0123618, 26 p.

First report of Xanthomonas citripv. mangiferaeindicae causing mango bacterial canker on Mangifera indica L. in Benin. Zombré C., Sankara Philippe, Ouédraogo Souleymane, Wonni Issa, Pruvost Olivier, Boyer Claudine, Vernière Christian, Adandonon Appolinaire, Vayssières Jean-François, Ahohuendo B.C.. 2015. Plant Disease, 99 (12) : p. 1854.

Full genome sequence analysis of two isolates reveals a novel Xanthomonas species close to the sugarcane pathogen Xanthomonas albilineans. Pieretti Isabelle, Cociancich Stéphane, Bolot Stéphanie, Carrère Sébastien, Morisset Alexandre, Rott Philippe, Royer Monique. 2015. Genes, 6 (3) : 714-733.

Genetic structure analysis of strains causing citrus canker in Iran reveals the presence of two different lineages of Xanthomonas citri pv. citri pathotype A*. Pruvost Olivier, Goodarzi T., Boyer Karine, Soltaninejad H., Escalon Aline, Alavi S.M., Javegny Stéphanie, Boyer Claudine, Cottyn B., Gagnevin Lionel, Vernière Christian. 2015. Plant Pathology, 64 (4) : 776-784.

Heterologous expression of the avirulence gene ACE1 from the fungal rice pathogen Magnaporthe oryzae. Song Zhongshu, Bakeer Walid, Marshall James W., Yakasai Ahmed A., Mohd Khalid Rozida, Collemare Jérôme, Skellam Elizabeth, Tharreau Didier, Lebrun Marc-Henri, Lazarus Colin M., Bailey Andrew M., Simpson Thomas J., Cox Russel J.. 2015. Chemical Science, 6 (8) : 4837-4845.

Identification and mapping of a novel blast resistance gene Pi57 (t) in Oryza longistaminata. Xu Jianlong, Dong Liying, Zhou Jiawu, Li Jing, Zhang Y., Hu F.Y., Liu S.F., Wang Qun, Deng Wei, Deng X.N., Tharreau Didier, Yang Qinzhong, Tao Dayun. 2015. Euphytica, 205 (1) : 95-102.

Identification of Theobroma cacao genes differentially expressed during Phytophthora megakarya infection. Legavre Thierry, Ducamp Michel, Sabau Xavier, Argout Xavier, Fouet Olivier, Dedieu Frédéric, Surujdeo-Maharaj Surendra, Garcia Dominique, Paulin Didier, Lanaud Claire. 2015. Physiological and Molecular Plant Pathology, 92 : 1-13.

Identification of novel Bromus- and Trifolium-associated circular DNA viruses. Kraberger Simona, Farkas Kata, Bernardo Pauline, Booker Cameron, Argüello-Astorga Gerardo, Mesleard François, Martin Darren Patrick, Roumagnac Philippe, Varsani Arvind. 2015. Archives of Virology, 160 (5) : 1303-1311.

Mapping genetic determinants of viral traits with FST and quantitative trait locus (QTL) approaches. Doumayrou Juliette, Thébaud Gaël, Vuillaume Florence, Peterschmitt Michel, Urbino Cica. 2015. Virology, 484 : 346-353.

Metagenomic analysis of the sugarcane virome in Florida reveals prevalent and potential novel viruses. Fernandez Emmanuel, Filloux Denis, Comstock Jack C., Roumagnac Philippe, Rott Philippe. 2015. Phytopathology, 105 (11S), Résumé : S4.43. 2015 APS Annual Meeting, Pasadena, États-Unis, 1 Août 2015/5 Août 2015.

Monitoring the dynamics of emergence of a non-canonical recombinant of Tomato yellow leaf curl virus and displacement of its parental viruses in tomato. Belabess Zineb, Dallot Sylvie, El Montaser S., Granier Martine, Majde M., Tahiri Abdessalem, Blenzar Abdelali, Urbino Cica, Peterschmitt Michel. 2015. Virology, 486 : 291-306.

Multiple introductions and admixture at the origin of the continental spread of the fungal banana pathogen Mycosphaerella fijiensis in Central America: a statistical test using approximate bayesian computation. Robert Stéphanie, Zapater Marie-Françoise, Carlier Jean, Abadie Catherine, Ravigné Virginie. 2015. Revue d'Ecologie, 70, suppl. n°12 "Invasions biologiques" : 127-138.

Occurrence and distribution of Banana bunchy top virus related agro-ecosystem in South Western, Democratic Republic of Congo. Mukwa Lyna Fama Tongo, Muengula M., Zinga Innocent, Kalonji A., Iskra Caruana Marie-Line, Bragard Claude. 2015. American Journal of Plant Sciences, 5 (5) : 647-658.

Specific hopanoid classes differentially affect free-living and symbiotic states of Bradyrhizobium diazoefficiens. Kulkarni Gargi, Busset Nicolas, Molinaro Antonio, Gargani Daniel, Chaintreuil Clémence, Silipo Alba, Giraud Eric, Newman Dianne K.. 2015. Mbio, 6 (5):e01251-15, 9 p.

TOGGLE: toolbox for generic NGS analyses. Monat Cécile, Tranchant-Dubreuil Christine, Kougbeadjo Ayite, Farcy Cédric, Ortega-Abboud Enrique, Amanzougarene Souhila, Ravel Sébastien, Agbessi Mawussé, Orjuela-Bouniol Julie, Summo Marilyne, Sabot François. 2015. BMC Bioinformatics, 16 (374) : 1-8.

Total synthesis of albicidin: A lead structure from Xanthomonas albilineans for potent antibacterial gyrase inhibitors. Kretz Julian, Kerwat Dennis, Schubert Vivien, Grätz Stefan, Pesic Alexander, Semsary Siamak, Cociancich Stéphane, Royer Monique, Süssmuth Roderich. 2015. Angewandte Chemie (International ed.), 54 (6) : 1969-1973.

Utilization of differential line and vegetative compatibility group methods for the characterization of isolates of Magnaporthe oryzae from Africa. Rotich F., Mutiga S., Feng C., Harvey J., Silué Drissa, Tharreau Didier, Mitchell Thomas K., Wang Guo-Liang, Talbot Nicholas J., Correll J.. 2015. Phytopathology, 105 (11S), Résumé : S4.120-S4.121. 2015 APS Annual Meeting, Pasadena, États-Unis, 1 Août 2015/5 Août 2015.

Visacane: An innovative quarantine tool for the exchange of pest and disease-free sugarcane germplasm. Guinet-Brial Isabelle, Girard Jean-Claude, Roumagnac Philippe, Daugrois Jean-Heinrich, Fernandez Emmanuel, Rott Philippe. 2015. International Sugar Journal : 890-896.

What makes Xanthomonas albilineans unique amongst xanthomonads? Pieretti Isabelle, Pesic Alexander, Petras Daniel, Royer Monique, Süssmuth Roderich, Cociancich Stéphane. 2015. Frontiers in Plant Science, 6 (289), 7 p.

The albicidin resistance factor AlbD is a serine endopeptidase that hydrolyzes unusual oligoaromatic-type peptides. Vieweg Laura, Kretz Julian, Pesic Alexander, Kerwat Dennis, Grätz Stefan, Royer Monique, Cociancich Stéphane, Mainz Andi, Süssmuth Roderich. 2015. Journal of the American Chemical Society, 137 (4) : 7608-7611.

The decoy substrate of a pathogen effector and a pseudokinase specify pathogen-induced modified-self recognition and immunity in plants. Wang Guoxun, Roux Brice, Feng Feng, Guy Endrick, Li Lin, Li Nannan, Zhang Xiaojuan, Lautier Martine, Jardinaud Marie-Françoise, Chabannes Matthieu, Arlat Mathieu, Chen She, He Chaozu, Noel Laurent D., Zhou Jian-Min. 2015. Cell Host and Microbe, 18 (3) : 285-295.

The genomes of many yam species contain transcriptionally active endogenous geminiviral sequences that may be functionally expressed. Filloux Denis, Murrell Sasha, Koohapitagtam M., Golden Michael, Julian Charlotte, Galzi Serge, Uzest Marilyne, Rodier-Goud Marguerite, D'Hont Angélique, Vernerey Marie-Stéphanie, Wilkin P., Peterschmitt Michel, Winter Stephan, Murrell Ben, Martin Darren Patrick, Roumagnac Philippe. 2015. Virus Evolution, 1 (1), 17 p.

The gyrase inhibitor albicidin consists of p-aminobenzoic acids and cyanoalanine. Cociancich Stéphane, Pesic Alexander, Petras Daniel, Uhlmann Stefanie, Kretz Julian, Schubert Vivien, Vieweg Laura, Duplan Sandrine, Marguerettaz Mélanie, Noëll Julie, Pieretti Isabelle, Hügelland Manuela, Kemper Sebastien, Mainz Andi, Rott Philippe, Royer Monique, Süssmuth Roderich. 2015. Nature Chemical Biology, 11 : 195-197.

A novel bioassay to monitor fungicide sensitivity in Mycosphaerella fijiensis. Ngando Essoh Otto Josué, Rieux Adrien, Nguidjo Oscar, Pignolet Luc, Dubois Cécile, Mehl Andréas, Zapater Marie-Françoise, Carlier Jean, De Lapeyre de Bellaire Luc. 2015. Pest Management Science, 71 (3) : 441-451.

Appearances can be deceptive: Revealing a hidden viral infection with deep sequencing in a plant quarantine Context. Candresse Thierry, Filloux Denis, Muhire Brejnev, Julian Charlotte, Galzi Serge, Fort Guillaume, Bernardo Pauline, Daugrois Jean-Heinrich, Fernandez Emmanuel, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2014. PloS One, 9 (7):e102945, 13 p.

Breaking dogmas: the plant vascular pathogen Xanthomonas albilineans is able to invade non-vascular tissues despite its reduced genome. Mensi Imène, Vernerey Marie-Stéphanie, Gargani Daniel, Nicole Michel, Rott Philippe. 2014. Open Biology, 4 (130116), 13 p.

Conservation agriculture cropping system to limit blast disease in upland rainfed rice. Sester Mathilde, Raveloson Harinjaka, Tharreau Didier, Dusserre Julie. 2014. Plant Pathology, 63 (2) : 373-381.

Covalently linked hopanoid-lipid A improves outer-membrane resistance of a Bradyrhizobium symbiont of legumes. Silipo Alba, Vitiello Giuseppe, Gully Djamel, Sturiale Luisa, Chaintreuil Clémence, Fardoux Joël, Gargani Daniel, Lee Hae-In, Kulkarni Gargi, Busset Nicolas, Marchetti Roberta, Palmigiano Angelo, Moll Herman, Engel Regina, Lanzetta Rosa, Paduano Luigi, Parrilli Michelangelo, Chang Woo-Suk, Holst Otto, Newman Dianne K., Garozzo Domenico, D'Errico Gerardino, Giraud Eric, Molinaro Antonio. 2014. Nature Communications, 5 (5106), 11 p.

Diversity of the cassiicolin gene in Corynespora cassiicola and relation with the pathogenicity in Hevea brasiliensis. Déon Marine, Fumanal Boris, Gimenez Stéphanie, Bieysse Daniel, Oliveira Ricardo R., Shuib Siti Shuhada, Breton Frédéric, Elumalai Sunderasan, Vida João B., Seguin Marc, Leroy Thierry, Roeckel-Drevet Patricia, Pujade-Renaud Valérie. 2014. Fungal Biology, 118 (1) : 32-47.

Evasion of short Interfering RNA-directed antiviral silencing in Musa acuminata persistently infected with six distinct banana streak pararetroviruses. Rajeswaran Rajendran, Seguin Jonathan, Chabannes Matthieu, Duroy Pierre-Olivier, Laboureau Nathalie, Farinelli Laurent, Iskra Caruana Marie-Line, Pooggin Mikhail. 2014. Journal of Virology, 88 (19) : 11516-11528.

First report of Acidovorax avenae subsp. avenae causing sugarcane red stripe in Gabon. Girard Jean-Claude, Noëll Julie, Larbre François, Roumagnac Philippe, Rott Philippe. 2014. Plant Disease, 98 (5) : 684.

Genetic structure of Bemisia tabaci Med populations fromhome-range countries, inferred by nuclear and cytoplasmic markers: impact on the distribution of the insecticide resistance genes. Gauthier Nathalie, Clouet Cécile, Perrakis Andreas, Kapantaidaki Despoina, Peterschmitt Michel, Tsagkarakou A.. 2014. Pest Management Science, 70 (10) : 1477-1491.

Leaf surface colonization of sugarcane by Xanthomonas albilineans and subsequent disease progress vary according to the host cultivar. Daugrois Jean-Heinrich, Boisne-Noc Rosiane, Rott Philippe. 2014. Plant Disease, 98 (2) : 191-196.

Long-distance wind-dispersal of spores in a fungal plant pathogen: Estimation of anisotropic dispersal kernels from an extensive field experiment. Rieux Adrien, Soubeyrand Samuel, Bonnot François, Klein Etienne, Ngando Essoh Otto Josué, Mehl Andréas, Ravigné Virginie, Carlier Jean, De Lapeyre de Bellaire Luc. 2014. PloS One, 9 (8):e103225, 13 p.

Molecular characterization of yam virus X, a new potexvirus infecting yams (Dioscorea spp) and evidence for the existence of at least three distinct potexviruses infecting yams. Acina Manbole Isabelle Nina, Bonheur Lydiane, Svanella-Dumas Laurence, Filloux Denis, Gomez Rose-Marie, Faure Chantal, Lange David, Anzala Fabiola, Pavis Claudie, Marais Armelle, Roumagnac Philippe, Candresse Thierry, Teycheney Pierre-Yves. 2014. Archives of Virology, 159 (12) : 3421-3426.

Multiples fonctions des usines virales : l'exemple du virus de la mosaïque du chou-fleur (Cauliflower mosaic virus). Bak Aurélie, Blanc Stéphane, Gargani Daniel, Martinière Alexandre, Drucker Martin. 2014. Virologie, 18 (4) : 201-210.

Occurrence, prevalence and molecular diversity of banana streak viruses in Cuba. Javer-Higginson Elisa, Acina Manbole Isabelle Nina, González José Efrain, Font Caridad, Gonzalez Gloria, Echemendia Ana Lidia, Muller Emmanuelle, Teycheney Pierre-Yves. 2014. European Journal of Plant Pathology, 138 (1) : 157-166.

Positional cloning of the rice male sterility gene ms-IR36, widely used in the inter-crossing phase of recurrent selection schemes. Frouin Julien, Filloux Denis, Taillebois James E., Grenier Cécile, Montes Fabienne, De Lamotte Frédéric, Verdeil Jean-Luc, Courtois Brigitte, Ahmadi Nourollah. 2014. Molecular Breeding, 33 (3) : 555-567.

Production and evaluation of transgenic sorghum for resistance to stem borer. Visarada K.B.R.S., Padmaja P.G., Saikishore N., Pashupatinah E., Royer Monique, Seetharama N., Patil J.V.. 2014. In Vitro Cellular and Developmental Biology. Plant, 50 (2) : 176-189.

Prospecting sugarcane resistance to Sugarcane yellow leaf virus by genome-wide association. Débibakas Sarah, Rocher Solen, Garsmeur Olivier, Toubi Lyonel, Roques Danièle, D'Hont Angélique, Hoarau Jean-Yves, Daugrois Jean-Heinrich. 2014. Theoretical and Applied Genetics, 127 (8) : 1719-1732.

Resolving the polyphyletic nature of Pyricularia (Pyriculariaceae). Klaubauf S., Tharreau Didier, Fournier Elisabeth, Crous Pedro W., De Vries Ronald P., Lebrun Marc-Henri. 2014. Studies in Mycology, 79 : 85-120.

Sequence variation and recognition specificity of the avirulence gene AvrPiz-T in Magnaporthe Oryzae field populations. Chen Chenx, Chen Meilian, Hu Jinnan, Zhang Wenjing, Zhong Zhenhui, Jia Yulin, Allaux Ludovic, Fournier Elisabeth, Tharreau Didier, Wang Guo-Liang, Wang Zonghua, Shen Wei-Chiang, Lu Guodong, Wang Baohua, Mitchell Thomas K.. 2014. Fungal Genomics and Biology, 4 (1), 8 p.

Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics. Vayssier-Taussat Muriel, Albina Emmanuel, Citti Christine, Cosson Jean François, Jacques Marie Agnès, Lebrun Marc-Henri, Le Loir Yves, Ogliastro Mylène, Petit Marie-Agnès, Roumagnac Philippe, Candresse Thierry. 2014. Frontiers in Cellular and Infection Microbiology, 4 (29), 7 p.

South-East Asia is the center of origin, diversity and dispersion of the rice blast fungus, Magnaporthe oryzae. Saleh Dounia, Milazzo Joëlle, Adreit Henri, Fournier Elisabeth, Tharreau Didier. 2014. New Phytologist, 201 (4) : 1440-1456.

The common evolutionary history of badnaviruses and banana. Iskra Caruana Marie-Line, Duroy Pierre-Olivier, Chabannes Matthieu, Muller Emmanuelle. 2014. Infection, Genetics and Evolution, 21 : 83-89.

The effect of mating system on invasiveness: some genetic load may be advantageous when invading new environments. Bazin Eric, Mathé-Hubert Hugo, Facon Benoît, Carlier Jean, Ravigné Virginie. 2014. Biological Invasions, 16 (4) : 875-886.

The genome of African yam (Dioscorea cayenensis-rotundata complex) hosts endogenous sequences from four distinct badnavirus species. Umber Marie, Filloux Denis, Muller Emmanuelle, Laboureau Nathalie, Galzi Serge, Roumagnac Philippe, Iskra Caruana Marie-Line, Pavis Claudie, Teycheney Pierre-Yves, Seal Susan. 2014. Molecular Plant Pathology, 15 (8) : 790-801.

A novel itera-like densovirus isolated by viral metagenomics from the sea barley Hordeum marinum. François Sarah, Bernardo Pauline, Filloux Denis, Roumagnac Philippe, Yaverkovski Nicole, Froissart Rémi, Ogliastro Mylène. 2014. Genome Announcements, 2 (6):e01196, 2 p.

A possible scenario for the evolution of Banana streak virus in banana. Iskra Caruana Marie-Line, Chabannes Matthieu, Duroy Pierre-Olivier, Muller Emmanuelle. 2014. Virus Research, 186 : 155-162. International Plant Virus Epidemiology Symposium. 12, Arusha, Tanzanie, 28 Janvier 2013/1 Février 2013.

The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Seal Susan, Turaki Aliyu, Muller Emmanuelle, Lava Kumar P., Kenyon Lawrence, Filloux Denis, Galzi Serge, Lopez-Montes Antonio, Iskra Caruana Marie-Line. 2014. Virus Research, 186 : 144-145. International Plant Virus Epidemiology Symposium. 12, Arusha, Tanzanie, 28 Janvier 2013/1 Février 2013.

The variety mixture strategy assessed in a G × G experiment with rice and the blast fungus Magnaporthe oryzae. Gallet Romain, Bonnot François, Milazzo Joëlle, Tertois Christophe, Adreit Henri, Ravigné Virginie, Tharreau Didier, Fournier Elisabeth. 2014. Frontiers in Genetics, 4 (312), 11 p.

Création variétale pour la riziculture pluviale d'altitude à Madagascar : bilan de 25 années de sélection. Raboin Louis-Marie, Ramanantsoanirina Alain, Dzido Jean-Luc, Frouin Julien, Radanielina Tendro, Tharreau Didier, Dusserre Julie, Ahmadi Nourollah. 2013. Cahiers Agricultures, 22 (5) : 450-458.

Endogenous pararetroviruses - a reservoir of virus infection in plants. Chabannes Matthieu, Iskra Caruana Marie-Line. 2013. Current Opinion in Virology, 3 (6) : 615-620.

Evidence of gene flow between sympatric populations of the Middle East-Asia Minor 1 and Mediterranean putative species of Bemisia tabaci. Tahiri Abdessalem, Halkett Fabien, Granier Martine, Gueguen Gwénaelle, Peterschmitt Michel. 2013. Ecology and Evolution, 3 (8) : 2619-2633.

First report of sugarcane leaf scald in Gabon caused by a highly virulent and aggressive strain of Xanthomonas albilineans. Mensi Imène, Girard Jean-Claude, Pieretti Isabelle, Larbre François, Roumagnac Philippe, Royer Monique, Rott Philippe. 2013. Plant Disease, 97 (7) : 988.

Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides. Royer Monique, Koebnik Ralf, Marguerettaz Mélanie, Barbe Valérie, Robin Guillaume P., Brin Christelle, Carrère Sébastien, Gomez Camila, Hügelland Manuela, Völler Ginka H., Noëll Julie, Pieretti Isabelle, Rausch Saskia, Verdier Valérie, Poussier Stéphane, Rott Philippe, Süssmuth Roderich, Cociancich Stéphane. 2013. BMC Genomics, 14 (658), 19 p.

Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads. Darrasse Armelle, Carrère Sébastien, Barbe Valérie, Boureau Tristan, Arrieta-Ortiz Mario L., Bonneau Sophie, Briand Martial, Brin Christelle, Cociancich Stéphane, Durand Karine, Fouteau Stéphanie, Gagnevin Lionel, Guérin Fabien, Guy Endrick, Indiana Arnaud, Koebnik Ralf, Lauber Emmanuelle, Munoz Alejandra, Noel Laurent D., Pieretti Isabelle, Poussier Stéphane, Pruvost Olivier, Robène-Soustrade Isabelle, Rott Philippe, Royer Monique, Serres-Giardi Laurana, Szurek Boris, Van Sluys Marie-Anne, Verdier Valérie, Vernière Christian, Arlat Mathieu, Manceau Charles, Jacques Marie Agnès. 2013. BMC Genomics, 14 (761), 30 p.

Identification and characterisation of a highly divergent geminivirus: Evolutionary and taxonomic implications. Bernardo Pauline, Golden Michael, Akram Mohammad, Naimuddin, Nadarajan Nagaswamy, Fernandez Emmanuel, Granier Martine, Rebelo Anthony, Peterschmitt Michel, Martin Darren Patrick, Roumagnac Philippe. 2013. Virus Research, 177 (1) : 35-45.

Inheritance of resistance to coffee wilt disease (Fusarium xylarioides Steyaert) in Robusta coffee (Coffea canephora Pierre) and breeding perspectives. Musoli Chungason Pascal, Cilas Christian, Pot David, Nabaggala Agnès, Nakendo Saleh, Pande James, Charrier André, Leroy Thierry, Bieysse Daniel. 2013. Tree Genetics and Genomes, 9 (2) : 351-360.

Investigating the genetic load of an emblematic invasive species: the case of the invasive harlequin ladybird Harmonia axyridis. Tayeh Ashraf, Estoup Arnaud, Hufbauer Ruth A., Ravigné Virginie, Goryacheva I., Zakharov I.A., Lombaert E., Facon Benoît. 2013. Ecology and Evolution, 3 (4) : 864-871.

Métagénomique virale et pathologie Une histoire récente. Bernardo Pauline, Albina Emmanuel, Eloit Marc, Roumagnac Philippe. 2013. MS - Médecine Sciences, 29 (5) : 501-508.

Natural genetic variation of Xanthomonas campestris pv. campestris pathogenicity on Arabidopsis revealed by association and reverse genetics. Guy Endrick, Genissel Anne, Hajri Ahmed, Chabannes Matthieu, David Perrine, Carrère Sébastien, Lautier Martine, Roux Brice, Boureau Tristan, Arlat Mathieu, Poussier Stéphane, Noel Laurent D.. 2013. Mbio, 4 (3) : 00538-12.

Photosynthetic Bradyrhizobium sp. strain ORS285 is capable of forming nitrogen-fixing root nodules on soybeans (Glycine max). Giraud Eric, Xu Lei, Chaintreuil Clémence, Gargani Daniel, Gully Djamel, Sadowsky Michael. 2013. Applied and Environmental Microbiology, 79 (7) : 2459-2462.

Quantitative trait loci for partial resistance to Pseudomonas syringae pv. maculicola in Arabidopsis thaliana. Rant Jenni C., Arraiano Lia S., Chabannes Matthieu, Brown James K.M.. 2013. Molecular Plant Pathology, 14 (8) : 828-837.

Recent range expansion and agricultural landscape heterogeneity have only minimal effect on the spatial genetic structure of the plant pathogenic fungus Mycosphaerella fijiensis. Rieux Adrien, De Lapeyre de Bellaire Luc, Zapater Marie-Françoise, Ravigné Virginie, Carlier Jean. 2013. Heredity, 110 (1) : 29-38.

The RpfCG two-component system negatively regulates the colonization of sugar cane stalks by Xanthomonas albilineans. Rott Philippe, Fleites Laura, Mensi Imène, Sheppard L.J., Daugrois Jean-Heinrich, Dow J. Maxwell, Gabriel Dean W.. 2013. Microbiology, 159 (6) : 1149-1159.

Thermotolerance adaptation to human-modified habitats occurs in the native range of the invasive ant Wasmannia auropunctata before long-distance dispersal. Foucaud Julien, Rey Olivier, Robert Stéphanie, Crespin Laurent, Orivel Jérôme, Facon Benoît, Loiseau Anne, Jourdan Hervé, Kenne Martin, Mbenoun Masse Paul Serge, Tindo Maurice, Vonshak Merav, Estoup Arnaud. 2013. Evolutionary Applications, 6 (4) : 721-734.

Three infectious viral species lying in wait in the banana genome. Chabannes Matthieu, Baurens Franc-Christophe, Duroy Pierre-Olivier, Bocs Stéphanie, Vernerey Marie-Stéphanie, Rodier-Goud Marguerite, Barbe Valérie, Gayral Philippe, Iskra Caruana Marie-Line. 2013. Journal of Virology, 87 (15) : 8624-8637.

Transmission of rice blast from seeds to adult plants in a non-systemic way. Faivre-Rampant Odile, Geniès Laure, Piffanelli Pietro, Tharreau Didier. 2013. Plant Pathology, 62 (4) : 879-887.

Using neutral cline decay to estimate contemporary dispersal: a generic tool and its application to a major crop pathogen. Rieux Adrien, Lenormand Thomas, Carlier Jean, De Lapeyre de Bellaire Luc, Ravigné Virginie. 2013. Ecology Letters, 16 (6) : 721-730.

Virus factories of Cauliflower Mosaic Virus are virion reservoirs that engage actively in vector transmission. Bak Aurélie, Gargani Daniel, Macia Jean Luc, Malouvet Enrick, Vernerey Marie-Stéphanie, Blanc Stéphane, Drucker Martin. 2013. Journal of Virology, 87 (22) : 12207-12215.

Within-host dynamics of the emergence of tomato yellow leaf curl virus recombinants. Urbino Cica, Gutiérrez Serafin, Antolik Anna, Bouazza Nabila, Doumayrou Juliette, Granier Martine, Martin Darren Patrick, Peterschmitt Michel. 2013. PloS One, 8 (3):e58375, 14 p.

Xanthomonas albilineans OmpA1 appears to be functionally modular and both the OMC and C-like domains are necessary for leaf scald disease of sugarcane. Fleites Laura, Mensi Imène, Gargani Daniel, Zhang Shujian, Rott Philippe, Gabriel Dean W.. 2013. Molecular Plant-Microbe Interactions, 26 (10) : 1200-1210.

XopAC-triggered Immunity against Xanthomonas depends on Arabidopsis receptor-like cytoplasmic kinase genes PBL2 and RIPK. Guy Endrick, Lautier Martine, Chabannes Matthieu, Roux Brice, Lauber Emmanuelle, Arlat Mathieu, Noel Laurent D.. 2013. PloS One, 8 (8):e73469, 13 p.

The rice resistance protein pair RGA4/RGA5 recognizes the Magnaporthe oryzae effectors AVR-Pia and AVR1-CO39 by direct binding. Cesari Stella, Thilliez Gaëtan, Ribot Cécile, Chalvon Véronique, Michel Corinne, Jauneau Alain, Rivas Susana, Alaux Ludovic, Kanzaki Hiroyuki, Okuyama Yudai, Morel Jean-Benoit, Fournier Elisabeth, Tharreau Didier, Terauchi Ryohei, Kroj Thomas. 2013. Plant Cell, 25 (4) : 1463-1481.

A virus responds instantly to the presence of the vector on the host and forms transmission morphs. Martinière Alexandre, Bak Aurélie, Macia Jean Luc, Lautredou Nicole, Gargani Daniel, Doumayrou Juliette, Garzo Elisa, Moreno Aranzazu, Fereres Alberto, Blanc Stéphane, Drucker Martin. 2013. eLife (2), 26 p.

Anthropogenically induced adaptation to invade (AIAI) : Contemporary adaptation to human-altered habitats within the native range can promote invasions. Hufbauer Ruth A., Facon Benoît, Ravigné Virginie, Turgeon Julie, Foucaud Julien, Lee Carol E., Rey Olivier, Estoup Arnaud. 2012. Evolutionary Applications, 5 (1) : 89-101.

Arms race co-evolution of Magnaporthe oryzae AVR-Pik and rice Pik genes driven by their physical interactions. Kanzaki Hiroyuki, Yoshida Kentaro, Saitoh Hiromasa, Fujisaki Koki, Hirabuchi Akiko, Alaux Ludovic, Fournier Elisabeth, Tharreau Didier, Terauchi Ryohei, Sundaresan Venkatesan. 2012. Plant Journal, 72 (6) : 894-907.

Asexual reproduction induces a rapid and permanent loss of sexual reproduction capacity in the rice fungal pathogen Magnaporthe oryzae : Results of in vitro experimental evolution assays. Saleh Dounia, Milazzo Joëlle, Adreit Henri, Tharreau Didier, Fournier Elisabeth. 2012. BMC Evolutionary Biology, 12 (42), 16 p.

Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence. Delteil Amandine, Blein Mélisande, Faivre-Rampant Odile, Guellim Amira, Estevan Joan, Hirsch Judith, Bevitori Rosangela, Michel Corinne, Morel Jean-Benoit. 2012. Molecular Plant Pathology, 13 (1) : 72-82.

Characterization of a cassiicolin-encoding gene from Corynespora cassiicola, pathogen of rubber tree (Hevea brasiliensis). Déon Marine, Bourre Yanice, Gimenez Stéphanie, Berger Angélique, Bieysse Daniel, De Lamotte Frédéric, Poncet Joël, Roussel Véronique, Bonnot François, Oliver Gérald, Franchel Jérôme, Seguin Marc, Leroy Thierry, Roeckel-Drevet Patricia, Pujade-Renaud Valérie. 2012. Plant Science, 185-186 : 227-237.

Contrasting introduction scenarios among continents in the worldwide invasion of the banana fungal pathogen Mycosphaerella fijiensis. Robert Stéphanie, Ravigné Virginie, Zapater Marie-Françoise, Abadie Catherine, Carlier Jean. 2012. Molecular Ecology, 21 (5) : 1089-1114.

Development of expressed sequence tag and expressed sequence tag-simple sequence repeat marker resources for Musa acuminata. Passos Marco A.N., De Oliveira Cruz Viviane, Emediato Flavia L., De Camargo Teixeira Cristiane, Souza Jr Manoel T., Matsumoto Takashi, Rennó Azevedo Vânia C., Ferreira Claudia Fortes, Amorim Edson Perito, De Alencar Figueiredo Lucio Flavio, Martins Natalia, Barbosa Cavalcante Maria De Jesus, Baurens Franc-Christophe, Da Silva Jr Orzenil Bonfim, Pappas Junior Georgios, Pignolet Luc, Abadie Catherine, Ciampi Ana, Piffanelli Pietro, Miller Roberto Neil Gerard. 2012. AoB Plants, 2012 (pls030), 20 p.

Effect of temperatures and rainfall variations on the development of coffee berry disease caused by Colletotrichum kahawae. Mouen Bedimo Joseph Aubert, Cilas Christian, Nottéghem Jean-Loup, Bieysse Daniel. 2012. Crop Protection, 31 (1) : 125-131.

Genetic diversity of sugarcane yellow leaf virus in a sugarcane selection plot in Guadeloupe (FWI). Girard Jean-Claude, Fernandez Emmanuel, Daugrois Jean-Heinrich, Roques Danièle, Roumagnac Philippe, Rott Philippe. 2012. International Sugar Journal, 114 (1358) : 104-108. ISSCT Congress. 27, Veracruz, Mexique, 7 Mars 2010/11 Mars 2010.

Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels. Pieretti Isabelle, Royer Monique, Barbe Valérie, Carrère Sébastien, Koebnik Ralf, Couloux Arnaud, Darrasse Armelle, Gouzy Jérôme, Jacques Marie Agnès, Lauber Emmanuelle, Manceau Charles, Mangenot Sophie, Poussier Stéphane, Segurens Béatrice, Szurek Boris, Verdier Valérie, Arlat Mathieu, Gabriel Dean W., Rott Philippe, Cociancich Stéphane. 2012. BMC Genomics, 13 (658), 23 p.

Geographical differentiation of the molecular diversity of cacao swollen shoot virus in Togo. Oro Zokou Franck, Mississo Essivi, Okassa Mireille, Guilhaumon Claire, Fenouillet Catherine, Cilas Christian, Muller Emmanuelle. 2012. Archives of Virology, 157 (3) : 509-514.

Geographical distribution of Cacao swollen shoot virus Molecular Variability in Côte d'Ivoire. Kouakou Koffie, Kébé Boubacar Ismaël, Kouassi N., Ake Séverin, Cilas Christian, Muller Emmanuelle. 2012. Plant Disease, 96 (10) : 1445-1450.

In-depth molecular and phenotypic characterization in a rice insertion line library facilitates gene identification through reverse and forward genetics approaches. Lorieux Mathias, Blein Mélisande, Lozano Jaime, Bouniol Matthieu, Droc Gaëtan, Diévart Anne, Perin Christophe, Mieulet Delphine, Lanau Nadège, Bes Martine, Rouvière Claire, Gay Céline, Piffanelli Pietro, Larmande Pierre, Michel Corinne, Barnola Isabelle, Biderre-Petit Corinne, Sallaud Christophe, Perez Pascual, Bourgis Fabienne, Ghesquière Alain, Gantet Pascal, Tohmé Joe, Morel Jean-Benoit, Guiderdoni Emmanuel. 2012. Plant Biotechnology Journal, 10 (5) : 555-568.

Microsatellite markers for population studies of Phytophthora megakarya (Pythiaceae), a cacao pathogen in Africa. Mfegue Crescence Virginie, Herail Claude, Adreit Henri, Mbenoum Michael, Techou Zaccharie, Ten Hoopen Gerben Martijn, Tharreau Didier, Ducamp Michel. 2012. American Journal of Botany, 99 (9), e353-e356

Numerous clones resistant to Phytophthora palmivora in the "Guiana" genetic group of Theobroma cacao L. Thévenin Jean-Marc, Rossi Vivien, Ducamp Michel, Doare Fabien, Condina Virgile, Lachenaud Philippe. 2012. PloS One, 7 (7):e40915, 6 p.

Outer membrane protein OmpA is required for disease symptom development and colonization of sugarcane by Xanthomonas albilineans. Fleites Laura, Rott Philippe, Zhang Shujian, Gabriel Dean W.. 2012. Phytopathology, 102 (7), suppl.4, Résumé, S4.39 2012 APS Annual Meeting, Providence, États-Unis, 4 Août 2012/8 Août 2012.

Reversible oxygen-tolerant hydrogenase carried by free-living N2-fixing bacteria isolated from the rhizospheres of rice, maize, and wheat. Roumagnac Philippe, Richaud Pierre, Barakat Mohamed, Ortet Philippe, Roncato Marie-Anne, Heulin Thierry, Peltier Gilles, Achouak Wafa, Cournac Laurent. 2012. MicrobiologyOpen, 1 (4) : 349-361.

Sex at the origin: an Asian population of the rice blast fungus Magnaporthe oryzae reproduces sexually. Saleh Dounia, Xu Peng, Shen Ying, Li Chengyun, Adreit Henri, Milazzo Joëlle, Ravigné Virginie, Bazin Eric, Nottéghem Jean-Loup, Fournier Elisabeth, Tharreau Didier. 2012. Molecular Ecology, 21 (6) : 1330-1344.

Spatiotemporal pattern analysis of Cacao swollen shoot virus in experimental plots in Togo. Oro Zokou Franck, Bonnot François, Ngo Bieng Marie-Ange, Delaitre Eric, Dufour Bernard Pierre, Ametefe Komivi Exonam, Mississo Essivi, Wegbe Komlan, Muller Emmanuelle, Cilas Christian. 2012. Plant Pathology, 61 (6) : 1043-1051.

Two-component cultivar mixtures reduce rice blast epidemics in an upland agrosystem. Raboin Louis-Marie, Ramanantsoanirina Alain, Dusserre Julie, Razasolofonanahary F., Tharreau Didier, Lannou Christian, Sester Mathilde. 2012. Plant Pathology, 61 (6) : 1103-1111.

Understanding the recent colonization history of a plant pathogenic fungus using population genetic tools and Approximate Bayesian Computation. Barrès Benoit, Carlier Jean, Seguin Marc, Fenouillet Catherine, Cilas Christian, Ravigné Virginie. 2012. Heredity, 109 : 269-279.

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. D'Hont Angélique, Denoeud France, Aury Jean-Marc, Baurens Franc-Christophe, Carreel Françoise, Garsmeur Olivier, Noël Benjamin, Bocs Stéphanie, Droc Gaëtan, Rouard Mathieu, Da Silva Corinne, Jabbari Kamel, Cardi Céline, Poulain Julie, Souquet Marlène, Labadie Karine, Jourda Cyril, Lengellé Juliette, Rodier-Goud Marguerite, Alberti Adriana, Bernard Maria, Correa Margot, Ayyampalayam Saravanaraj, Mckain Michael R, Leebens-Mack Jim, Burgess Diane, Freeling Mike, Mbéguié-A-Mbéguié Didier, Chabannes Matthieu, Wicker Thomas, Panaud Olivier, Barbosa Jose, Hribova Eva, Heslop Harrison Pat, Habas Rémy, Rivallan Ronan, François Philippe, Poiron Claire, Kilian Andrzej, Burthia Dheema, Jenny Christophe, Bakry Frédéric, Brown Spencer, Guignon Valentin, Kema Gert H.J., Dita Miguel A., Waalwijk Cees, Joseph Steeve, Diévart Anne, Jaillon Olivier, Leclercq Julie, Argout Xavier, Lyons Eric, Almeida Ana, Jeridi Mouna, Dolezel Jaroslav, Roux Nicolas, Risterucci Ange-Marie, Weissenbach Jean, Ruiz Manuel, Glaszmann Jean-Christophe, Quetier Francis, Yahiaoui Nabila, Wincker Patrick. 2012. Nature, 488 (7410) : 213-217.

The chestnut blight fungus world tour: successive introduction events from diverse origins in an invasive plant fungal pathogen. Dutech Cyril, Barrès Benoit, Bridier Julie, Robin Cécile, Milgroom Michael, Ravigné Virginie. 2012. Molecular Ecology, 21 (16) : 3931-3946.

The revisited infection cycle of Xanthomonas albilineans, the causal agent of leaf scald of sugarcane. Daugrois Jean-Heinrich, Boisne-Noc Rosiane, Champoiseau Patrice, Rott Philippe. 2012. Functional Plant Science and Biotechnology, 6 (2), spec. : 91-97.

Distribution of the phenotypic effects of random homologous recombination between two virus species. Vuillaume Florence, Thébaud Gaël, Urbino Cica, Forfert Nadège, Granier Martine, Blanc Stéphane, Peterschmitt Michel. 2011. PLoS Pathogens, 7 (5):e1002028, 10 p.

Divergent expression patterns of miR164 and CUP-SHAPED COTYLEDON genes in palms and other monocots : Implication for the evolution of meristem function in angiosperms. Adam Hélène, Marguerettaz Mélanie, Qadri Rashad, Adroher Bernard, Richaud Frédérique, Collin Myriam, Thuillet Anne-Céline, Vigouroux Yves, Laufs Patrick, Tregear James, Jouannic Stefan. 2011. Molecular Biology and Evolution, 28 (4) : 1439-1454.

Extensive settlement of the invasive MEAM1 population of Bemisia tabaci (Hemiptera: Aleyrodidae) in the Caribbean and rare detection of indigenous populations. Muñiz Yudilai, Granier Martine, Caruth C., Umaharan Pathmanathan, Marchal Céline, Pavis Claudie, Wicker Emmanuel, Martínez Yamila, Peterschmitt Michel. 2011. Environmental Entomology, 40 (5) : 989-998.

First report of orange rust of sugarcane caused by Puccinia kuehnii in Ivory Coast and Cameroon. Saumtally A. Salem, Viremouneix T.R., Ahondokpê B., Girard Jean-Claude, Castlebury L.A., Dixon L., Glynn Neil C., Comstock Jack C.. 2011. Plant Disease, 95 (3) : 357.

Genomic and evolutionary features of the SPI-1 type III secretion system that is present in Xanthomonas albilineans but is not essential for Xylem colonization and symptom development of sugarcane leaf scald. Marguerettaz Mélanie, Pieretti Isabelle, Gayral Philippe, Puig Jérôme, Brin Christelle, Cociancich Stéphane, Poussier Stéphane, Rott Philippe, Royer Monique. 2011. Molecular Plant-Microbe Interactions, 24 (2) : 246-259.

High molecular variability of sugarcane bacilliform viruses in Guadeloupe implying the existence of at least three new species. Muller Emmanuelle, Dupuy Virginie, Blondin Laurence, Bauffe Frédérique, Daugrois Jean-Heinrich, Laboureau Nathalie, Iskra Caruana Marie-Line. 2011. Virus Research, 160 (1-2) : 414-419.

Homoeologous chromosome pairing between the A and B genomes of Musa spp. revealed by genomic in situ hybridization. Jeridi Mouna, Bakry Frédéric, Escoute Jacques, Fondi Emmanuel, Carreel Françoise, Ferchichi Ali, D'Hont Angélique, Rodier-Goud Marguerite. 2011. Annals of Botany, 108 (5) : 975-981.

Identification of new candidate pathogenicity factors in the xylem-invading pathogen Xanthomonas albilineans by transposon mutagenesis. Rott Philippe, Fleites Laura, Marlow Gary C., Royer Monique, Gabriel Dean W.. 2011. Molecular Plant-Microbe Interactions, 24 (5) : 594-605.

Impact de la maladie virale du swollen shoot du cacaoyer sur la production de cacao en milieu paysan à Bazré (Côte d'Ivoire). Kouakou Koffie, Kébé Boubacar Ismaël, Kouassi N., Anno A.P., Aké S., Muller Emmanuelle. 2011. Journal of Applied Biosciences, 43 : 2947-2957.

Impact of past climatic and recent anthropogenic factors on wild yam genetic diversity. Chaïr Hâna, Duroy Pierre-Olivier, Cubry Philippe, Sinsin Brice Augustin, Pham Jean Louis. 2011. Molecular Ecology, 20 (8) : 1612-1623.

Inferences on pathogenic fungus population structures from microsatellite data: new insights from spatial genetics approaches. Rieux Adrien, Halkett Fabien, De Lapeyre de Bellaire Luc, Zapater Marie-Françoise, Rousset F., Ravigné Virginie, Carlier Jean. 2011. Molecular Ecology, 20 (8) : 1661-1674.

Multidisciplinary perspectives on banana (Musa spp.) domestication. Perrier Xavier, De Langhe Edmond, Donohue Marc, Lentfer Carol, Vrydaghs Luc, Bakry Frédéric, Carreel Françoise, Hippolyte Isabelle, Horry Jean-Pierre, Jenny Christophe, Lebot Vincent, Risterucci Ange-Marie, Tomekpé Kodjo, Doutrelepont Hugues, Ball Terry, Manwaring Jason, De Maret Pierre, Denham Tim. 2011. Proceedings of the National Academy of Sciences of the United States of America, 108 (28) : 11311-11318.

Nodulation of Aeschynomene afraspera and A. indica by photosynthetic Bradyrhizobium Sp. Strain ORS285 : The nod-dependent versus the nod-independent symbiotic interaction. Bonaldi Katia, Gargani Daniel, Prin Yves, Fardoux Joël, Gully Djamel, Nouwen Nico, Goormachtig Sofie, Giraud Eric. 2011. Molecular Plant-Microbe Interactions, 24 (11) : 1359-1371.

Phylogeography and molecular epidemiology of yersinia pestis in Madagascar. Vogler Amy. J., Chan Fabien, Wagner David.M., Roumagnac Philippe, Lee Judy, Nera Roxanne, Eppinger Mark, Ravel Jacques, Rahalison Lila, Rasoamanana Bruno W., Beckstrom-Sternberg Stephen M., Achtman Mark, Chanteau Suzanne, Keim Paul. 2011. PLoS Neglected Tropical Diseases, 5 (9):e1319, 11 p.

Recombination in Eukaryotic single stranded DNA viruses. Martin Darren Patrick, Biagini Philippe, Lefeuvre Pierre, Golden Michael, Roumagnac Philippe, Varsani Arvind. 2011. Viruses, 3 (9) : 1699-1738.

Salmonella enterica serotype typhi with nonclassical quinolone resistance phenotype. Accou-Demartin Marie, Gaborieau Valérie, Song Yajun, Roumagnac Philippe, Marchou Bruno, Achtman Mark, Weill François-Xavier. 2011. Emerging Infectious Diseases, 17 (6) : 1091-1094.

Selection for resistance to Phytophthora pod rot of cocoa (Theobroma cacao L.) in Cameroon: Repeatability and reliability of screening tests and field observations. Efombagn Mousseni Ives Bruno, Bieysse Daniel, Nyassé Salomon, Eskes Albertus. 2011. Crop Protection, 30 (2) : 105-110.

Spread of Sugarcane yellow leaf virus in initially disease-free sugarcane is linked to rainfall and host resistance in the humid tropical environment of Guadeloupe. Daugrois Jean-Heinrich, Edon-Jock Carine, Bonotto Sandrine, Vaillant Jean, Rott Philippe. 2011. European Journal of Plant Pathology, 129 (1) : 71-80.

Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae). Hamon Perla, Duroy Pierre-Olivier, Dubreuil-Tranchant Christine, Mafra d'Almeida Costa Paulo, Duret Caroline, Razafinarivo Norosa J., Couturon Emmanuel, Hamon Serge, De Kochko Alexandre, Poncet Valérie, Guyot Romain. 2011. Molecular Genetics and Genomics, 287 (1) : 447-460.

Unravelling pathogenicity of Xanthomonas albilineans, the causal agent of sugarcane leaf scald. Rott Philippe, Marguerettaz Mélanie, Cociancich Stéphane, Girard Jean-Claude, Pieretti Isabelle, Gabriel Dean W., Royer Monique. 2011. International Sugar Journal, 113 (1351) : 490-496. ISSCT Congress. 27, Veracruz, Mexique, 7 Mars 2010/11 Mars 2010.

Black leaf streak disease is challenging the banana industry. De Lapeyre de Bellaire Luc, Fouré Eric, Abadie Catherine, Carlier Jean. 2010. Fruits, 65 (6) : 327-342.

Development of elite indica rice lines with wide spectrum of resistance to Thai blast isolates by pyramiding multiple resistance QTLs. Sreewongchai Tanee, Toojinda Theerayut, Thanintorn N., Kosawang C., Vanavichit Apichart, Tharreau Didier, Sirithunya Pattama. 2010. Plant Breeding, 129 (2) : 176-180.

Endosymbiont metacommunities, mtDNA diversity and the evolution of the Bemisia tabaci (Hemiptera: Aleyrodidae) species complex. Gueguen Gwénaelle, Vavre Fabrice, Gnankine Olivier, Peterschmitt Michel, Charif Delphine, Chiel Elad, Gottlieb Yuval, Ghanim Murad, Zchori Fein Einat, Fleury Frédéric. 2010. Molecular Ecology, 19 (19) : 4365-4378.

Evidence for rapid changes in the population genetic structure of Magnaporthe oryzae in Southern Spain. Lara-Alvarez Isaac, Tharreau Didier, Aguilar Portero Manuel, Castejon-Munoz Mercedes. 2010. Journal of Phytopathology, 158 (11-12) : 785-791.

Evolution and population structure of Salmonella enterica serovar Newport. Sangal Vartul, Harbottle Heather, Mazzoni Camila J., Helmuth Reiner, Guerra Beatriz, Didelot Xavier, Paglietti Bianca, Rabsch Wolfgang, Brisse Sylvain, Weill François-Xavier, Roumagnac Philippe, Achtman Mark. 2010. Journal of Bacteriology, 192 (24) : 6465-6476.

Evolution of endogenous sequences of Banana Streak Virus: what can we learn from banana (Musa sp.) evolution? Gayral Philippe, Blondin Laurence, Guidolin Olivier, Carreel Françoise, Hippolyte Isabelle, Perrier Xavier, Iskra Caruana Marie-Line. 2010. Journal of Virology, 84 (14) : 7346-7359.

Exocytosis and protein secretion in Trypanosoma. Geiger Anne, Hirtz Christophe, Bécue Thierry, Bellard Eric, Centeno Delphine, Gargani Daniel, Rossignol Michel, Cuny Gérard, Peltier Jean-Benoît. 2010. BMC Microbiology, 10 (20), 17 p.

Genetic discontinuities and disequilibria in recently established populations of the plant pathogenic fungus Mycosphaerella fijiensis. Halkett Fabien, Coste David, Rivas Gonzalo Galilaeo, Zapater Marie-Françoise, Abadie Catherine, Carlier Jean. 2010. Molecular Ecology, 19 (18) : 3909-3923.

Identification des plantes hôtes de Bemisia tabaci (Gennadius 1889) au Maroc et évaluation du risque d'infection de la tomate par le TYLCV à partir de quelques espèces adventices. Tahiri Abdessalem, Blenzar Abdelali, Urbino Cica, Peterschmitt Michel. 2010. Revue Marocaine de Protection des Plantes (1) : 33-39.

Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0). Cornuet Jean-Marie, Ravigné Virginie, Estoup Arnaud. 2010. BMC Bioinformatics, 11 (401), 11 p.

Micropropagation by tissue culture triggers differential expression of infectious endogenous Banana streak virus sequences (eBSV) present in the B genome of natural and synthetic interspecific banana plantains. Côte François-Xavier, Galzi Serge, Folliot Michel, Lamagnère Yannick, Teycheney Pierre-Yves, Iskra Caruana Marie-Line. 2010. Molecular Plant Pathology, 11 (1) : 137-144.

Optimized genotyping with microsatellite markers in the fungal banana pathogen Mycosphaerella fijiensis (Mycosphaerellaceae). Robert Stéphanie, Rieux Adrien, Argout Xavier, Carlier Jean, Zapater Marie-Françoise. 2010. American Journal of Botany, 97 (12), e130-e132

Preformed expression of defense is a hallmark of partial resistance to rice blast fungal pathogen Magnaporthe oryzae. Vergne Emilie, Grand Xavier, Ballini Elsa, Chalvon Véronique, Saindrenan P., Tharreau Didier, Nottéghem Jean-Loup, Morel Jean-Benoit. 2010. BMC Plant Biology, 10 (206), 17 p.

Role of rainfall in the development of coffee berry disease in Coffea arabica caused by Colletotrichum kahawae, in Cameroon. Mouen Bedimo Joseph Aubert, Bieysse Daniel, Nyassé Salomon, Nottéghem Jean-Loup, Cilas Christian. 2010. Plant Pathology, 59 (2) : 324-329.

Variable number of tandem repeat markers in the genome sequence of Mycosphaerella fijiensis, the causal agent of black leaf streak disease of banana (Musa spp). Garcia S.A.L., Van der Lee Theo A.J., Ferreira Claudia Fortes, Te Lintel Hekkert B., Zapater Marie-Françoise, Goodwin Stephen B., Kema Gert H.J., Souza M.T.. 2010. Genetics and Molecular Research, 9 (4) : 2207-2212.

Xanthomonas albilineans needs an OmpA family outer protein for disease symptom development and multiplication in the sugarcane stalk : [Abstracts]. Rott Philippe, Fleites Laura, Marlow Gary C., Royer Monique, Gabriel Dean W.. 2010. Phytopathology, 100 (6S), suppl., Résumé, S111 2010 APS Annual Meeting, Charlotte, États-Unis, 7 Août 2010/11 Août 2010.

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Morelli Giovanna, Song Yajun, Mazzoni Camila J., Eppinger Mark, Roumagnac Philippe, Wagner David.M., Feldkamp Mirjam, Kusecek Barica, Vogler Amy. J., Li Yanjun, Cui Yujun, Thomson Nicholas R, Jombart Thibaut, Leblois Raphaël, Lichtner Peter, Rahalison Lila, Petersen Jeannine M, Balloux François, Keim Paul, Wirth Thierry, Ravel Jacques, Yang Ruifu, Carniel Elisabeth, Achtman Mark. 2010. Nature Genetics, 42 (12) : 1140-1143.

The "acrostyle": A newly described anatomical structure in aphid stylets. Uzest Marilyne, Gargani Daniel, Dombrovsky Aviv, Cazevieille Chantal, Cot Didier, Blanc Stéphane. 2010. Arthropod Structure and Development, 39 (4) : 221-229.

A four-partner plant-virus interaction: enemies can also come from within. Iskra Caruana Marie-Line, Baurens Franc-Christophe, Gayral Philippe, Chabannes Matthieu. 2010. Molecular Plant-Microbe Interactions, 23 (11) : 1394-1402.

A multiplex single nucleotide polymorphism typing assay for detecting mutations that result in decreased fluoroquinolone susceptibility in Salmonella enterica serovars Typhi and Paratyphi A. Song Yajun, Roumagnac Philippe, Weill François-Xavier, Wain John, Dolecek Christiane, Mazzoni Camila J., Holt Kathryn E., Achtman Mark. 2010. Journal of Antimicrobial Chemotherapy, 65 (8) : 1631-1641.

A saturated SSR/DArT linkage map of Musa acuminata addressing genome rearrangements among bananas. Hippolyte Isabelle, Bakry Frédéric, Seguin Marc, Gardes Laëtitia, Rivallan Ronan, Risterucci Ange-Marie, Jenny Christophe, Perrier Xavier, Carreel Françoise, Argout Xavier, Piffanelli Pietro, Khan Imtiaz A., Miller Roberto Neil Gerard, Pappas Junior Georgios, Mbéguié-A-Mbéguié Didier, Matsumoto Takashi, De Bernardinis Véronique, Huttner Eric, Kilian Andrzej, Baurens Franc-Christophe, D'Hont Angélique, Côte François-Xavier, Courtois Brigitte, Glaszmann Jean-Christophe. 2010. BMC Plant Biology, 10 (65), 18 p.

Acquisition of callogenic capacity in date palm leaf tissues in response to 2,4-D treatment. Gueye Badara, Morcillo Fabienne, Collin Myriam, Gargani Daniel, Overvoorde Paul, Aberlenc-Bertossi Frédérique, Tranbarger Timothy John, Sané Djibril, Tregear James, Borgel Alain, Verdeil Jean-Luc. 2009. Plant Cell, Tissue and Organ Culture, 99 (1) : 35-45.

Aggressiveness and its role in the adaptation of plant pathogens. Pariaud Bénédicte, Ravigné Virginie, Halkett Fabien, Goyeau Henriette, Carlier Jean, Lannou Christian. 2009. Plant Pathology, 58 (3) : 409-424.

Constitutive expression of OsGH3.1 reduces auxin content and enhances defense response and resistance to a fungal pathogen in rice. Domingo Concha, Andres Fernando, Tharreau Didier, Iglesias Domingo, Talon Manuel. 2009. Molecular Plant-Microbe Interactions, 22 (2) : 201-210.

Dating the origins of the maize-adapted strain of maize streak virus, MSV-A. Harkins Gordon William, Martin Darren Patrick, Duffy Siobain, Monjane Adérito Luis, Shepherd Dionne Natalie, Windram Oliver P., Owor Betty E., Donaldson Lara, Van Antwerpen Tania, Sayed Rizwan A., Flett Bradley, Ramusi Moses, Rybicki Edward P., Peterschmitt Michel, Varsani Arvind. 2009. Journal of General Virology, 90 (12) : 3066-3074.

Effects of temperature increase on the epidemiology of three major vector-borne viruses. Reynaud Bernard, Delatte Hélène, Peterschmitt Michel, Fargette Denis. 2009. European Journal of Plant Pathology, 123 (3) : 269-280.

Establishment of an in vitro sciarid fly larvae assay to study plant resistance. Chabannes Matthieu, Hatt G., Thébaud Gaël, Bedford I.D., Lamb C.. 2009. Annals of Applied Biology, 155 (2) : 293-296.

Genetic differentiation of wild and cultivated populations : Diversity of Coffea canephora Pierre in Uganda. Musoli Chungason Pascal, Cubry Philippe, Aluka P., Billot Claire, Dufour Magali, De Bellis Fabien, Pot David, Bieysse Daniel, Charrier André, Leroy Thierry. 2009. Genome (Ottawa), 52 : 634-646.

Genetic mapping of Magnaporthe grisea avirulence gene corresponding to leaf and panicle blast resistant QTLs in Jao Hom Nin Rice cultivar. Sreewongchai Tanee, Sriprakhon Siangchai, Vanavichit Apichart, Toojinda Theerayut, Tharreau Didier, Sirithunya Pattama. 2009. Journal of Phytopathology, 157 (6) : 338-343.

Improvement of cropping systems by integration of rice breeding: A novel genetic improvement strategy. Vales Michel, Séguy Lucien, Bouzinac Serge, Taillebois James E.. 2009. Euphytica, 167 (2) : 161-164.

Large accumulations of maize streak virus in the filter chamber and midgut cells of the leafhopper vector Cicadulina mbila. Ammar El-Desouky, Gargani Daniel, Lett Jean-Michel, Peterschmitt Michel. 2009. Archives of Virology, 154 (2) : 255-262.

Live where you thrive : joint evolution of habitat choice and local adaptation facilitates specialization and promotes diversity. Ravigné Virginie, Dieckmann U., Olivieri Isabelle. 2009. American Naturalist, 174 (4), e141-e169

Molecular evidence for the association of a strain of Uganda variant of East African cassava mosaic virus to symptom severity in cassava (Manihot esculenta Crantz) fields in Togo. Adjata K.D., Muller Emmanuelle, Peterschmitt Michel, Traoré Oumar, Gumedzoe M.Y.D.. 2009. American Journal of Biochemistry and Biotechnology, 5 (4) : 196-201.

An OmpA family outer membrane protein is required for both disease symptom development and sugarcane stalk colonization by Xanthomonas albilineans. Rott Philippe, Fleites Laura, Marlow Gary C., Royer Monique, Gabriel Dean W.. 2009. Phytopathology, 99 (6S), Résumé, S110-S111 2009 APS Annual Meeting, Portland, États-Unis, 1 Août 2009/5 Août 2009.

Parallel and interlaced recurrent selection (PAIRS): Demonstration of the feasibility of implementing PAIRS to improve complete and partial resistance to blast (Magnaporthe grisea) and some other main traits in rice. Vales Michel, Dossmann Johanna, Delgado Diana, Duque Myriam Cristina. 2009. Field Crops Research, 111 (1-2) : 173-178.

Phylogeny of Banana Streak Virus reveals recent and repetitive endogenization in the genome of its banana host (Musa sp.). Gayral Philippe, Iskra Caruana Marie-Line. 2009. Journal of Molecular Evolution, 69 (1) : 65-80.

Suggestions for a nomenclature of endogenous pararetroviral sequences in plants. Staginnus Christina, Iskra Caruana Marie-Line, Lockhart Benham E.L., Hohn Thomas, Richert-Poeggeler Katja R.. 2009. Archives of Virology, 154 (7) : 1189-1193.

The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae. Pieretti Isabelle, Royer Monique, Barbe Valérie, Carrère Sébastien, Koebnik Ralf, Cociancich Stéphane, Couloux Arnaud, Darrasse Armelle, Gouzy Jérôme, Jacques Marie Agnès, Lauber Emmanuelle, Manceau Charles, Mangenot Sophie, Poussier Stéphane, Segurens Béatrice, Szurek Boris, Verdier Véronique, Arlat Mathieu, Rott Philippe. 2009. BMC Genomics, 10 (616), 15 p.

A role for plant microtubules in the formation of transmission-specific inclusion bodies of Cauliflower mosaic virus. Martinière Alexandre, Gargani Daniel, Uzest Marilyne, Lautredou Nicole, Blanc Stéphane, Drucker Martin. 2009. Plant Journal, 58 (1) : 135-146.

A single linkage group confers dominant resistance to Bacillus thuringiensis d-endotoxin Cry1Ac in Helicoverpa armigera. Wu Y., Vassal Jean-Michel, Royer Monique, Pieretti Isabelle. 2009. Journal of Applied Entomology, 133 : 375-380.

ARCHIPELAGO: A dedicated resource for exploiting past, present, and future genomic data on disease resistance regulation in rice. Vergne Emilie, Ballini Elsa, Droc Gaëtan, Tharreau Didier, Nottéghem Jean-Loup, Morel Jean-Benoit. 2008. Molecular Plant-Microbe Interactions, 21 (7) : 869-878.

Artificial inoculation on plants and banana leaf pieces with Mycosphaerella spp., responsible for Sigatoka leaf spot diseases. Abadie Catherine, Zapater Marie-Françoise, Pignolet Luc, Carlier Jean, Mourichon Xavier. 2008. Fruits, 63 (5) : 319-323.

Characterization of the model system rice Magnaporthe for the study of nonhost resistance in cereals. Faivre-Rampant Odile, Thomas Justine, Allègre Mathilde, Morel Jean-Benoit, Tharreau Didier, Nottéghem Jean-Loup, Lebrun Marc-Henri, Schaffrath Ulrich, Piffanelli Pietro. 2008. New Phytologist, 180 (4) : 899-910.

Construction of a genetic linkage map of the fungal pathogen of banana Mycosphaerella fijiensis, causal agent of black leaf streak disease. Manzo-Sanchez Gilberto, Zapater Marie-Françoise, Luna-Martinez Francisco, Conde-Ferraez Laura, Carlier Jean, James-Kay Andrew, Simpson June. 2008. Current Genetics, 53 (5) : 299-311.

Diagnosis of Mycosphaerella spp., responsible for Mycosphaerella leaf spot diseases of bananas and plantains, through morphotaxonomic observations. Zapater Marie-Françoise, Abadie Catherine, Pignolet Luc, Carlier Jean, Mourichon Xavier. 2008. Fruits, 63 (6) : 389-393.

Effect of shade on Arabica Coffee Berry Disease development toward an agroforestry system to reduce disease impact. Mouen Bedimo Joseph Aubert, Njiayouom Ibrahim, Bieysse Daniel, Ndoumbé Nkeng Michel, Cilas Christian, Nottéghem Jean-Loup. 2008. Phytopathology, 98 (12) : 1320-1325.

Fine mapping of rice blast QTLl from Oryza rufipogon and IR644 by SNP markers. Utami Dwinita, Moeljopawiro S., Hanarida I., Tharreau Didier. 2008. SABRAO Journal of Breeding and Genetics, 40 (2) : 105-115.

First report of simultaneous presence of tomato yellow leaf curl Sardinia virus and tomato yellow leaf curl Isarel virus infecting crops and weeds in Tunisia. Pellegrin Frédéric, Mnari Hattab Monia, Tahiri Abdessalem, Dalleau-Clouet C., Peterschmitt Michel, Bonato Olivier. 2008. Journal of Plant Pathology, 90 (1), Résumé : 145.

Fungi have three tetraspanin families with distinct functions. Lambou Karine, Tharreau Didier, Kohler Annegret, Sirven Catherine, Marguerettaz Mélanie, Barbisan Crystel, Sexton Adrienne C., Kellner Ellen M., Martin Francis, Howlett Barbara J., Orbach M., Lebrun Marc-Henri. 2008. BMC Genomics, 9 (63), 14 p.

Gender-role alternation in the simultaneously hermaphroditic freshwater snail Physa acuta : not with the same partner. Facon Benoît, Ravigné Virginie, Goudet Jérôme. 2008. Behavioral Ecology and Sociobiology, 62 (5) : 713-720.

Genetic structure of the invasive pest Bemisia tabaci : Evidence of limited but persistent genetic differentiation in glasshouse populations. Dalmon Anne, Halkett Fabien, Granier Martine, Delatte Hélène, Peterschmitt Michel. 2008. Heredity, 100 (1) : 316-325.

A Genome-wide meta-analysis of rice blast resistance genes and quantitative trait loci provides new insights into partial and complete resistance. Ballini Elsa, Morel Jean-Benoit, Droc Gaëtan, Price Adam H., Courtois Brigitte, Nottéghem Jean-Loup, Tharreau Didier. 2008. Molecular Plant-Microbe Interactions, 21 (7) : 859-868.

Impact of environmental factors, chemical fungicide and biological control on cacao pod production dynamics and black pod disease (Phytophthora megakarya) in Cameroon. Deberdt Peninna, Mfegue Crescence Virginie, Tondje Pierre R., Bon M.C., Ducamp Michel, Hurard Corinne, Begoude Dider, Ndoumbé Nkeng Michel, Hebbar Prakash K., Cilas Christian. 2008. Biological Control, 44 (2) : 149-159.

Incidence of cassava viral diseases and first identification of East African cassava mosaic virus and Indian cassava mosaic virus by PCR in cassava (Manihot esculenta Crantz) fields in Togo. Adjata K.D., Muller Emmanuelle, Peterschmitt Michel, Aziadekey M., Gumedzoe M.Y.D.. 2008. American Journal of Plant Physiology, 3 (2) : 73-80.

Linking dendritic network structures to population demogenetics : The downside of connectivity. Labonne Jacques, Ravigné Virginie, Parisi Bruno, Gaucherel Cédric. 2008. Oikos, 117 (10) : 1479-1490.

Mapping the Peste des Petits Ruminants virus nucleoprotein: Identification of two domains involved in protein self-association. Bodjo Sanne Charles, Lelenta Mamadou, Couacy-Hymann Emmanuel, Kwiatek Olivier, Albina Emmanuel, Gargani Daniel, Libeau Geneviève, Diallo Adama. 2008. Virus Research, 131 (1) : 23-32.

Microsatellite markers for the fungal banana pathogens, Mycosphaerella fijiensis, Mycosphaerella musicola and Mycosphaerella eumusae. Zapater Marie-Françoise, Duchemin Myriam, Dussart Jean-François, Brottier Philippe, Carlier Jean. 2008. Molecular Ecology Resources, 8 (5) : 1121-1125.

Multiple gene genealogies and phenotypic characters differentiate several novel species of Mycosphaerella and related anamorphs on banana. Arzanlou Mahdi, Groenewald Johannes Z., Fullerton R.A., Abeln Edwin C.A., Carlier Jean, Zapater M.C., Buddenhagen I.W., Viljoen A., Crous Pedro W.. 2008. Persoonia (20) : 19-37.

New sources of resistance to Phytophthora megakarya identified in wild cocoa tree populations of French Guiana. Paulin Didier, Ducamp Michel, Lachenaud Philippe. 2008. Crop Protection, 27 (7) : 1143-1147.

Population viscosity can promote the evolution of altruistic sterile helpers and eusociality. Lehmann Laurent, Ravigné Virginie, Keller Laurent. 2008. Proceedings - Royal Society. Biological Sciences, 275 (1645) : 1887-1895.

Recent advances in research on sugarcane yellow leaf virus, the causal agent of sugarcane yellow leaf. Rott Philippe, Mirkov T.Erik, Schenck S., Girard Jean-Claude. 2008. Sugar Cane International, 26 (3) : 18-22.

Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen. Varsani Arvind, Shepherd Dionne Natalie, Monjane Adérito Luis, Owor Betty E., Erdmann Julia B., Rybicki Edward P., Peterschmitt Michel, Briddon Rob W., Markham Peter G., Oluwafemi Sunday, Windram Oliver P., Lefeuvre Pierre, Lett Jean-Michel, Martin Darren Patrick. 2008. Journal of General Virology, 89 (9) : 2063-2074.

Spatial and temporal analysis of coffee wilt disease caused by Fusarium xylarioides in Coffea canephora. Musoli Chungason Pascal, Pinard Fabrice, Charrier André, Kangire Africano, Ten Hoopen Gerben Martijn, Kabole C., Ogwang J., Bieysse Daniel, Cilas Christian. 2008. European Journal of Plant Pathology, 122 (4) : 451-460.

Susceptibility of rice to the blast fungus, Magnaporthe grisea. Ribot Cécile, Hirsch Judith, Balzergue Sandrine, Tharreau Didier, Nottéghem Jean-Loup, Lebrun Marc-Henri, Morel Jean-Benoit. 2008. Journal of Plant Physiology, 165 (1) : 114-124.

Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions. Argout Xavier, Fouet Olivier, Wincker Patrick, Gramacho Karina Peres, Legavre Thierry, Sabau Xavier, Risterucci Ange-Marie, Da Silva Corinne, Cascardo Julio Cezar M., Allègre Mathilde, Kuhn David N., Verica Joseph, Courtois Brigitte, Loor Rey Gaston, Babin Régis, Sounigo Olivier, Ducamp Michel, Guiltinan Mark J., Ruiz Manuel, Alemanno Laurence, Machado Regina, Phillips Wilbert, Schnell Raymond J., Gilmour Martin, Rosenquist Eric, Butler David R., Maximova Siela N., Lanaud Claire. 2008. BMC Genomics, 9 (512), 19 p.

Une protéine clé pour la transmission d'un virus de plante à la pointe des stylets de l'insecte vecteur. Blanc Michel, Uzest Marilyne, Candresse Thierry, Drucker Martin, Fereres Alberto, Gargani Daniel, Garzo Elisa, Hebrard Eugénie. 2008. Virologie, 12 (1) : 70-72.

The crucial role of the Pls1 tetraspanin during ascospore germination in Podospora anserina provides an example of the convergent evolution of morphogenetic processes in fungal plant pathogens and saprobes. Lambou Karine, Malagnac Fabienne, Barbisan Crystel, Tharreau Didier, Lebrun Marc-Henri, Silar Philippe. 2008. Eukaryotic Cell, 7 (10) : 1809-1818.

A diffusible signal factor modulates albicidin biosynthesis by Xanthomonas albilineans. Rott Philippe, Reddy S.L., Marlow Gary C., Royer Monique, Gabriel Dean W.. 2008. Phytopathology, 98 (6S), suppl. 136, Résumé, 1 p. 2008 APS Centennial Meeting, Minneapolis, États-Unis, 26 Juillet 2008/30 Juillet 2008.

A novel cloning strategy for isolating, genotyping and phenotyping genetic variants of geminiviruses. Urbino Cica, Thébaud Gaël, Granier Martine, Blanc Stéphane, Peterschmitt Michel. 2008. Virology Journal, 5 (135), 10 p.

A reliable IC One-step RT-PCR method for the detection of BBrMV to ensure safe exchange of Musa germplasm. Iskra Caruana Marie-Line, Galzi Serge, Laboureau Nathalie. 2008. Journal of Virological Methods, 153 (2) : 223-231.

A simple model for selection and rapid advancement of transgenic progeny in sorghum. Visarada K.B.R.S., Saikishore N., Kuriakose S.V., Shobha Rani V., Royer Monique, Rao S.V., Seetharama N.. 2008. Plant Biotechnology Reports, 2 (1) : 47-58.

A single Banana Streak Virus integration event in the banana genome as the origin of infectious endogenous pararetrovirus. Gayral Philippe, Noa-Carrazana Juan Carlos, Lescot Magali, Lheureux Fabrice, Lockhart Benham E.L., Matsumoto Takashi, Piffanelli Pietro, Iskra Caruana Marie-Line. 2008. Journal of Virology, 82 (13) : 6697-6710.

Clonality and host selection in the wheat pathogenic fungus Puccinia triticina. Goyeau Henriette, Halkett Fabien, Zapater Marie-Françoise, Carlier Jean, Lannou Christian. 2007. Fungal Genetics and Biology, 44 (6) : 474-483.

Cryopreservation of yam germplasm in Guadeloupe (FWI). Gallet Séverine, Gamiette Franciane, Filloux Denis, Engelmann Florent. 2007. Advances in Horticultural Science, 21 (4) : 244-246.

Effect of cultural practices on the development of arabica coffee berry disease, caused by Colletotrichum kahawae. Mouen Bedimo Joseph Aubert, Bieysse Daniel, Njiayouom Ibrahim, Deumeni Jean Pierre, Cilas Christian, Nottéghem Jean-Loup. 2007. European Journal of Plant Pathology, 119 (4) : 391-400.

Effect of mating history on gender preference in the hermaphroditic snail Physa acuta. Facon Benoît, Ravigné Virginie, Sauteur Laure, Goudet Jérôme. 2007. Animal Behaviour, 74 : 1455-1461.

Electron-lucent inclusion bodies are structures specialized for aphid transmission of cauliflower mosaic virus. Khelifa Mounia, Journou Sandra, krishnan Kalpana, Gargani Daniel, Espérandiau Pascal, Blanc Stéphane, Drucker Martin. 2007. Journal of General Virology, 88 (10) : 2872-2880.

Evidence for a founder effect after introduction of Tomato yellow leaf curl virus mild in an insular environment. Delatte Hélène, Holota Hélène, Moury Benoit, Reynaud Bernard, Lett Jean-Michel, Peterschmitt Michel. 2007. Journal of Molecular Evolution, 65 (1) : 112-118.

Modern elite rice varieties of the 'Green Revolution' have retained a large introgression from wild rice around the Pi33 rice blast resistance locus. Ballini Elsa, Berruyer Romain, Morel Jean-Benoit, Lebrun Marc-Henri, Nottéghem Jean-Loup, Tharreau Didier. 2007. New Phytologist, 175 (1) : 340-350.

Molecular diagnostics for the sigatoka disease complex of banana. Arzanlou Mahdi, Abeln Edwin C.A., Kema Gert H.J., Waalwijk Cees, Carlier Jean, De Vries Ineke, Guzman Mauricio, Crous Pedro W.. 2007. Phytopathology, 97 (9) : 1112-1118.

Spatio-temporal dynamics of arabica coffee berry disease Caused by Colletotrichum kahawae on a plot scale. Mouen Bedimo Joseph Aubert, Bieysse Daniel, Cilas Christian, Nottéghem Jean-Loup. 2007. Plant Disease, 91 (10) : 1229-1236.

Substrate specificity-conferring regions of the nonribosomal peptide synthetase adenylation domains involved in albicidin pathotoxin biosynthesis are highly conserved within the species Xanthomonas albilineans. Renier Adeline, Vivien Eric, Cociancich Stéphane, Letourmy Philippe, Perrier Xavier, Rott Philippe, Royer Monique. 2007. Applied and Environmental Microbiology, 73 (17) : 5523-5530.

Twenty years of agronomic evaluation of wild cocoa trees (Theobroma cacao L.) from French Guiana. Lachenaud Philippe, Paulin Didier, Ducamp Michel, Thévenin Jean-Marc. 2007. Scientia Horticulturae, 113 : 313-321.

Variation in virus populations and growth characteristics of two sugarcane cultivars naturally infected by Sugarcane yellow leaf virus in different geographical locations. Abu Ahmad Youssef, Girard Jean-Claude, Fernandez Emmanuel, Pauquet Jérôme, Lockhart Benham E.L., Letourmy Philippe, Rott Philippe. 2007. Plant Pathology, 56 (5) : 743-754.

A protein key to plant virus transmission at the tip of the insect vector stylet. Uzest Marilyne, Gargani Daniel, Drucker Martin, Hebrard Eugénie, Garzo Elisa, Candresse Thierry, Fereres Alberto, Blanc Stéphane. 2007. Proceedings of the National Academy of Sciences of the United States of America, 104 (46) : 17959-17964.

Achieving sustainable cultivation of sugarcane. Volume 2: Breeding, pests and diseases. Rott Philippe (ed.). 2018. Cambridge : Burleigh Dodds Science Publishing, 468 p. (Burleigh Dodds Series in Agricultural Science, 38) ISBN 978-1-78676-148-4

Technical guidelines for the safe movement of Musa germplasm. Thomas J.E. (ed.), Sharman M. (collab.), Lassois Ludivine (collab.), Massart Sébastien (collab.), De Clerck Caroline (collab.), Caruana Marie-Line (collab.), Chabannes Matthieu (collab.), Teycheney Pierre-Yves (collab.), Lava Kumar P. (collab.), Van Den Houwe Ines (collab.), Roux Nicolas (collab.). 2015. Milan : Bioversity International, 60 p. ISBN 978-92-9255-034-9

Cacao swollen shoot virus (Caulimoviridae). Muller Emmanuelle. 2021. In : Encyclopedia of virology. Volume 3. Bamford Dennis (ed.), Zuckerman Mark (ed.). Oxford : Academic Press, 274-284. ISBN 978-0-12-814515-9

Coupling ecological network analysis with high-throughput sequencing-based surveys: Lessons from the next-generation biomonitoring project. Dubart Maxime, Alonso Pascal, Barroso-Bergada Didac, Becker Nathalie, Bethune Kevin, Bohan David A., Boury Christophe, Cambon Marine, Canard Elsa, Chancerel Emilie, Chiquet Julien, David Patrice, De Manincor Natasha, Donnet Sophie, Duputié Anne, Facon Benoît, Guichoux Erwan, Le Minh Tâm, Ortiz-Martínez Sebastián, Piouceau Lucie, Sacco-Martret de Préville Ambre, Plantegenest Manuel, Poux Céline, Ravigné Virginie, Robin Stéphane, Trillat Marine, Vacher Corinne, Vernière Christian, Massol François. 2021. In : The future of agricultural landscape, Part III. Bohan David A. (ed.), Dumbrell Alex J. (ed.), Vanbergen Adam J. (ed.). Cambridge : Academic Press, 367-430. (Advances in Ecological Research, 65) ISBN 978-0-323-91503-8

The repetitive content in lupin genomes. Ainouche Abdelkader, Paris Aurore, Giraud Delphine, Keller Jean, Raimondeau Pauline, Mahé Frédéric, Neuman Pavel, Novak Petr, Macas Jiri, Ainouche Malika Lily, Salmon Armel, Martin Guillaume. 2020. In : The lupin genome. Singh Karam B. (ed.), Kamphuis Lars G. (ed.), Nelson Matthew N. (ed.). Cham : Springer, 161-186. (Compendium of Plant Genomes) ISBN 978-3-030-21269-8

Banana streak. Iskra Caruana Marie-Line, Thomas J.E., Chabannes Matthieu. 2019. In : Handbook of diseases of banana, Abacá and Enset. Jones David R. (ed.). Wallingford : CABI, 393-408. ISBN 978-1-78064-719-7

Lutte contre les maladies des feuilles et des fruits. Mouliom Péfoura Alassa, Abadie-Fournier Catherine, Kwa Moïse. 2019. In : Le bananier plantain. Enjeux socio-économiques et techniques, expériences en Afrique intertropicale. Kwa Moise (ed.), Temple Ludovic (ed.). Versailles : Ed. Quae-CTA, 139-149. (Agricultures tropicales en poche) ISBN 978-2-7592-2679-5

Bract mosaic. Thomas J.E., Selvarajan Ramasamy, Iskra Caruana Marie-Line, Magnay John, Jones David R.. 2018. In : Handbook of diseases of banana, abacá and enset. Jones David R. (ed.). Wallingford : CABI, 378-384. ISBN 978-1-78064-719-7

From spatial metagenomics to molecular characterization of plant viruses: A geminivirus case study. Claverie Sohini, Bernardo Pauline, Kraberger Simona, Hartnady Penelope, Lefeuvre Pierre, Lett Jean-Michel, Galzi Serge, Filloux Denis, Harkins Gordon William, Varsani Arvind, Martin Darren Patrick, Roumagnac Philippe. 2018. In : Environmental virology and virus ecology. Malmstrom Carolyn M. (ed.). Burlington : Academic Press, 55-83. (Advances in Virus Research, 101) ISBN 978-0-12-814415-2

L'agro-écologie à Madagascar : de la plante au paysage. Naudin Krishna, Autfray Patrice, Dusserre Julie, Penot Eric, Raboin Louis-Marie, Raharison Tahina, Rakotoarisoa Jacqueline, Ramanantsoanirina Alain, Randrianjafizanaka Meva Tahiry, Rasolofo Laingo Irintso, Raveloson Harinjaka, Razafimahatratra Hanitriniaina Mamy, Salgado Paulo, Sester Mathilde, Vom Brocke Kirsten, Scopel Eric. 2018. In : La transition agro-écologique des agricultures du Sud. Côte François-Xavier (ed.), Poirier-Magona Emmanuelle (ed.), Perret Sylvain (ed.), Roudier Philippe (ed.), Bruno Rapidel (ed.), Thirion Marie-Cécile (ed.). Versailles : Ed. Quae, 43-80. (Agricultures et défis du monde) ISBN 978-2-7592-2824-9

Recent progress in understanding three major bacterial diseases of sugarcane: gumming, leaf scald and ratoon stunting. Royer Monique, Pieretti Isabelle, Cociancich Stéphane, Rott Philippe. 2018. In : Achieving sustainable cultivation of sugarcane. Volume 2: Breeding, pests and diseases. Rott Philippe (ed.). Cambridge : Burleigh Dodds Science Publishing, 311-336. ISBN 978-1-78676-148-4

Viral metagenomics and sugarcane pathogens. Roumagnac Philippe, Mollov Dimitre S., Daugrois Jean-Heinrich, Filloux Denis. 2018. In : Achieving sustainable cultivation of sugarcane. Volume 2: Breeding, pests and diseases. Rott Philippe (ed.). Cambridge : Burleigh Dodds Science Publishing, 183-200. (Burleigh Dodds Series in Agricultural Science) ISBN 978-1-78676-148-4

Viral metagenomics approaches for high-resolution screening of multiplexed arthropod and plant viral communities. François Sarah, Filloux Denis, Fernandez Emmanuel, Ogliastro Mylène, Roumagnac Philippe. 2018. In : Viral metagenomics: methods and protocols. Pantaleo Vitantonio (ed.), Chiumenti Michela (ed.). New York : Humana Press, 77-95. (Methods in Molecular Biology, 1746, 1746) ISBN 978-1-4939-7682-9

Cacao Swollen Shoot Virus (CSSV): History, Biology, and Genome. Muller Emmanuelle. 2016. In : Cacao diseases. A history of old enemies and new encounters. Bryan A. Bailey (ed.), Lyndel W. Meinhardt (ed.). Cham : Springer International Publishing, 337-358. ISBN 978-3-319-24787-8

Mastreviruses: Tropical and temperate leafhopper-borne geminiviruses. Kvarnheden Anders, Lett Jean-Michel, Peterschmitt Michel. 2016. In : Vector-mediated transmission of plant pathogens. Brown Judith K. (ed.). Saint Paul : APS Press, 231-241. ISBN 978-0-89054-535-5

Biology, etiology, and control of virus diseases of banana and plantain. Lava Kumar P., Selvarajan Ramasamy, Iskra Caruana Marie-Line, Chabannes Matthieu, Hanna Rachid. 2015. In : Control of Plant Virus Diseases Vegetatively-Propagated Crops. by Gad Loebenstein and Nikolaos I. Katis. New-York : Academic Press, 229-269. (Advances in Virus Research) ISBN 978-0-12-802762-2

Metagenomics approaches based on virion-associated nucleic acids (VANA): an innovative tool for assessing without A priori viral diversity of plants. Filloux Denis, Dallot Sylvie, Delaunay Agnès, Galzi Serge, Jacquot Emmanuel, Roumagnac Philippe. 2015. In : Plant pathology: techniques and protocols. Lacomme Christophe (ed.). New York : Springer [Etats-Unis], 249-257. (Methods in Molecular Biology, 1302) ISBN 978-1-4939-2619-0

SNaPshot and CE-SSCP: two simple and cost-effective methods to reveal genetic variability within a virus species. Delaunay Agnès, Dallot Sylvie, Filloux Denis, Dupuy Virginie, Roumagnac Philippe, Jacquot Emmanuel. 2015. In : Plant pathology: techniques and protocols. Lacomme Christophe (ed.). New York : Springer [Etats-Unis], 187-206. (Methods in Molecular Biology, 1302) ISBN 978-1-4939-2619-0

The dynamic world of the genus Xanthomonas. Pruvost Olivier, Robene Isabelle, Escalon Aline, Leduc Alice, Gagnevin Lionel, Vernière Christian, Wang Nian, Schwartz Howard F., Gent David H., Rott Philippe, Royer Monique, Alvarez Anne M., Vowell Tomie S., Toves Peter J., White Frank F., Potnis Neha, Jones Jeffrey B.. 2015. In : Virulence mechanisms of plant pathogenic bacteria. Wang Nian (ed.), Jones Jeffrey B. (ed.), Sundin George W. (ed.), White Frank F. (ed.), Hogenhout Saskia A. (ed.), Roper Caroline (ed.), De La Fuente Leonardo (ed.), Ham Jong Hyun (ed.). Saint Paul : The American Phytopathological Society, 381-385. ISBN 978-0-89054-444-0

Introduction [La modélisation d'accompagnement : une démarche participative en appui au développement durable]. Bousquet François, Etienne Michel, D'Aquino Patrick. 2010. In : La modélisation d'accompagnement : une démarche participative en appui au développement durable. Versailles : Ed. Quae, 9-20. (Update sciences et technologies) ISBN 978-2-7592-0620-9

La spéciation. Ravigné Virginie (ed.), Barberousse A. (collab.), Bierne Nicolas (collab.), Britton Davidian J. (collab.), Capy M.P. (collab.), Giraud Tatiana (collab.), Jousselin Emmanuelle (collab.), Moulia Catherine (collab.), Smadja Carole (collab.), Samadi Sarah (collab.). 2010. In : Biologie évolutive. Paris : De Boeck, 79-122. ISBN 978-2-8041-0161-9

Le dépérissement bactérien des Alliacées : émergence d'une phytobactériose. Roumagnac Philippe, Robène-Soustrade Isabelle, Humeau Laurence, Gagnevin Lionel, Chiroleu Frédéric, Jeuffrault Eric, Pruvost Olivier. 2010. In : Les maladies émergentes : épidémiologie chez le végétal, l'animal et l'homme. Barnouin Jacques (ed.), Sache Ivan (ed.). Versailles : Ed. Quae, 211-220. (Synthèses) ISBN 978-2-7592-0510-3

ARCHIPELAGO: Towards bridging the gap between molecular and genetic information in rice blast disease resistance. Ballini Elsa, Vergne Emilie, Tharreau Didier, Nottéghem Jean-Loup, Morel Jean-Benoit. 2009. In : Advances in genetics, genomics and control of rice blast disease. Wang Guo-Liang (ed.), Valent Barbara (ed.). New York : Springer [Etats-Unis], 417-425. ISBN 978-1-4020-9499-6

Biology, taxonomy and epidemiology of the coffee wilt pathogen Gibberella xylarioides sensu lato. Rutherford Mike, Bieysse Daniel, Lepoint Pascale, Maraite Henri. 2009. In : Coffee wilt disease. Flood Julie (ed.). Wallingford : CABI, 99-119. ISBN 978-1-84593-641-9

Breeding for resistance against coffee wilt disease. Musoli Chungason Pascal, Girma A., Hakiza Georgina J., Kangire Africano, Pinard Fabrice, Agwanda Charles O., Bieysse Daniel. 2009. In : Coffee wilt disease. Flood Julie (ed.). Wallingford : CABI, 155-175. ISBN 978-1-84593-641-9

Coffee diseases. Muller Raoul Amédée, Berry Dominique, Avelino Jacques, Bieysse Daniel. 2009. In : Coffee: growing, processing, sustainable production : A guidebook for growers, processors, traders, and researchers. Wintgens Jean Nicolas (ed.). Weinheim : Wiley-VCH, 495-549. ISBN 978-3-527-32286-2

Host-Pathogen interactions in Coffea-Gibberella xylarioides pathosystem. Girma A., Bieysse Daniel, Musoli Chungason Pascal. 2009. In : Coffee wilt disease. Flood Julie (ed.). Wallingford : CABI, 120-136. ISBN 978-1-84593-641-9

Quarantine for coffee. Bieysse Daniel. 2009. In : Coffee: growing, processing, sustainable production : A guidebook for growers, processors, traders, and researchers. Wintgens Jean Nicolas (ed.). Weinheim : Wiley-VCH, 597-598. ISBN 978-3-527-32286-2

Système qualité de l'unité mixte de recherche Biologie et génétique des interactions plantes-parasites. Birot Stéphane. 2009. In : La démarche qualité dans la recherche publique et l'enseignement supérieur. Granier Claude (ed.), Mas Léandre (ed.), Finot Luc (ed.), Arnoux Bernard (ed.), Pasqualini Nathalie (ed.), Dollé Vincent (ed.). Versailles : Ed. Quae, 151-161. (Update sciences et technologies) ISBN 978-2-7592-0334-5

World population structure and migration of the rice blast fungus, Magnaporthe oryzae. Tharreau Didier, Fudal Isabelle, Andriantsimialona Dodelys, Santoso, Utami Dwinita, Fournier Elisabeth, Lebrun Marc-Henri, Nottéghem Jean-Loup. 2009. In : Advances in genetics, genomics and control of rice blast disease. Wang Guo-Liang (ed.), Valent Barbara (ed.). New York : Springer [Etats-Unis], 209-215. ISBN 978-1-4020-9499-6

Cacao swollen shoot virus. Muller Emmanuelle. 2008. In : Characterization, diagnosis and management of plant viruses. Industrial crops. Rao Govind P. (ed.), Paul Khurana S.M. (ed.), Lenardon Sergio L. (ed.). Houston : Studium Press LLC, 423-444. (Plant pathogens series, 1) ISBN 1-933699-31-0

Cacao swollen shoot virus. Muller Emmanuelle. 2008. In : Encyclopedia of virology. Mahy B.W.J. (ed.), Van Regenmortel M.H.V. (ed.). Londres : Academic Press, 403-409. ISBN 978-0-12-373935-3

Evolution of integrated plant viruses. Hohn Thomas, Richert-Poeggeler Katja R., Staginnus Christina, Harper Glyn, Schwarzacher Trude, Chee How Teo, Teycheney Pierre-Yves, Iskra Caruana Marie-Line, Hull Roger. 2008. In : Plant virus evolution. Roossinck Marilyn J. (ed.). Berlin : Springer [Allemagne], 53-81. ISBN 978-3-540-75762-7

Mosaic diseases in sugarcane. Rott Philippe, Fernandez Emmanuel, Girard Jean-Claude. 2008. In : Characterization, diagnosis and management of plant viruses. Industrial crops. Rao Govind P. (ed.), Paul Khurana S.M. (ed.), Lenardon Sergio L. (ed.). Houston : Studium Press LLC, 99-110. (Plant pathogens series, 1) ISBN 1-933699-31-0

Transferring varieties in complete safety : Sugarcane quarantaine. Girard Jean-Claude, Domaingue Robert. 2008. In : Sugarcane = Canne à sucre. CIRAD-PERSYST-UPR Systèmes canniers. Montpellier : CIRAD, 2 p.

Transférer des variétés en toute sécurité : la quarantaine de canne à sucre. Girard Jean-Claude, Domaingue Robert. 2008. In : Canne à sucre = Sugarcane. CIRAD-PERSYST-UPR Systèmes canniers. Montpellier : CIRAD, 2 p.

An insular environment before and after TYLCV introduction. Delatte Hélène, Lett Jean-Michel, Lefeuvre Pierre, Reynaud Bernard, Peterschmitt Michel. 2007. In : Tomato yellow leaf curl virus disease : Management, molecular biology, breeding for resistance. Czosnek Henryk (ed.). Dordrecht : Springer [Pays-Bas], 13-23. ISBN 978-1-4020-4768-8

4th Xanthomonas genomics conference, Angers, France, july 9-12, 2012 : Book of abstracts. Manceau Charles (ed.), Jacques Marie Agnès (ed.), Arlat Mathieu (ed.), Lauber Emmanuelle (ed.), Noel Laurent D. (ed.), Gagnevin Lionel (ed.), Pruvost Olivier (ed.), Rott Philippe (ed.), Royer Monique (ed.), Koebnik Ralf (ed.), Verdier Valérie (ed.). 2012. Paris : INRA, 85 p. Xanthomonas genomics conference 2012. 4, Angers, France, 9 Juillet 2012/12 Juillet 2012.

Journées Jean Chevaugeon, VIIe rencontres de phytopathologie - mycologie de la Societé française de phytopathologie, du 20 au 24 janvier 2008 [Résumés]. Fernandez Diana (ed.), Carlier Jean (ed.), Tharreau Didier (collab.). 2008. Montpellier : CIRAD, 145 p. Journées Jean Chevaugeon, Rencontres de phytopathologie-mycologie. 7, Aussois, France, 20 Janvier 2008/24 Janvier 2008.

Edition of endogenous banana streak virus sequences (eBSV) in banana to lift the constraint linked to the presence of these sequences. Chabannes Matthieu. 2021. . Réseau EFOR. s.l. : Réseau EFOR, Résumé, 1 p. Annual Meeting of the EFOR Network. 10, 10 Mai 2021/11 Mai 2021.

Emergence of wheat blast in India and Bangladesh: an increasing risk for Europe? Thierry Maud, Pordel Adel, Cros-Arteil Sandrine, Adreit Henri, Milazzo Joëlle, Kroj Thomas, Morel Jean-Benoit, Fournier Elisabeth, Gladieux Pierre, Loos Renaud, Tharreau Didier. 2018. . EFSA, ANSES, OEPP. Paris : EFSA, 5-6. International Conference on the Impact of Global Change on the Emergence of Plant Diseases and Pests in Europe, Paris, France, 23 Avril 2018/24 Avril 2018.

Geometagenomics: A second metagenomics generation to better understand plant virus ecology and evolution. Filloux Denis, Martin Darren Patrick, Roumagnac Philippe. 2018. . Liège : s.n., 1 p. Final Meeting of COST-DIVAS Action: HTS Technologies for the study and diagnostic of plant viruses, Liège, Belgique, 26 Novembre 2018/30 Novembre 2018.

Integrated sequences of Banana streak virus (BSV) in banana plantain: how does gene silencing-based plant defense system work? Ricciuti Emeline, Massé Delphine, Hoestachy Bruno, Iskra Caruana Marie-Line. 2018. . Bordeaux : s.n., Résumé, 1 p. COST iPLANTA CA15223, WG1 Meeting "Comparing siRNA and miRNA technology and role for improving perennial plants", Bordeaux, France, 17 Juillet 2018/18 Juillet 2018.